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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U10366-1
Contig ID Contig-U10366-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10366-1 (Contig-U10366-1Q) /CSM_Contig/Contig-U10366-1Q.Seq.d
GTTAAAAAATACATTTATTACTTTAATCTTTACAATTATTTCAATTTCAA
TTTGTTTTGGTAGTCAATTACCAACAAACTATTATTTCAAAGTTACCCAT
GTTCCAATTTATTGTATTACCACACCGTGCAGTCAATACCGTGTCTATAA
GGTAAATACTCAAGATCCAGAGATTGTTATTGAAAATTTCGTTTTCCCAA
ATGGAGTTGAACAAAACTATTTCTCACTTCAAGAAGCCAATACTGCTATC
CTTTATGGTACTATCATTGCAAACAGAAATGGTTACAATGTAAATGATTT
TAAAGTAAAAAGAGTTTATAAACAACTTCCACAAGGTAATGCTTTAACAT
CAACTGATAAATATTATATGTTTGCTTCATCAGGTATTGTTTGCAATTAC
AACACCATGCCCATCAGTTTCAGCAATTTTATTAAATATTGATAATGCTG
CAACCAATGTTAATGATGTTAAGCAACCATATGAAAGGTAATGTACCACT
TTTCGATAGCAATTGGTTATTCCAAAAGCAATTTGAGTCAGAATCTAACA
GATTGATTGGTGTTGGTACAATTAATAGTCAAGGTGAAGTGATTGTTTCT
TCTTCTTTTGTAAGATTACCAGATCCAATTTCAAATTGTCCAGCATTACC
ATTATTAAAATGTCAAGGTGGTCATGTTACAGTTTACGAAAGAGATTCAA
ATCGTTGTTTAACAAATCCACAATGTTCAGAATGATAATGACACTCGTGC
TTGTATCCTTTCAATTCCAACCTGATCAACTGGTTATGATTTAGTATCTT
ATACTTCTATTTCAACTTGTCCAGCATACAACTGTGATGCTTATTTCTTA
ACAAAAACTTATTGAATTTAATTTAAATACATATATTTATAAATAAATAA
AAAAAAATAGTAATATATTTTTTTTTTATCACGTACTGGTACTCTTTTAT
ATTGACAATATCTTTTTTGTGTAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATA
Gap no gap
Contig length 1033
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5009194
End point 5010228
Strand (PLUS/MINUS) PLUS
Number of clones 11
Number of EST 13
Link to clone list U10366
List of clone(s) 

est1=VSF679E,1,926
est2=VSJ580F,7,482
est3=VFB209Z,246,873
est4=VSI514Z,284,847
est5=VSK263Z,331,925
est6=VFN148Z,332,1034
est7=VFG311Z,380,951
est8=VFB427Z,408,543
est9=VSI658F,417,930
est10=VSI658Z,417,926
est11=VFH204Z,482,811
est12=VSE458Z,496,987
est13=VSJ580Z,506,910
Translated Amino Acid sequence 
LKNTFITLIFTIISISICFGSQLPTNYYFKVTHVPIYCITTPCSQYRVYKVNTQDPEIVI
ENFVFPNGVEQNYFSLQEANTAILYGTIIANRNGYNVNDFKVKRVYKQLPQGNALTSTDK
YYMFASSGIVCNYNTMPISFSNFIKY**ccnqc**c*ati*kvmyhfsiaigysksnlsq
nltd*lvlvqlivkvk*lfllll*dyqiqfqivqhyhy*nvkvvmlqftkeiqivv*qih
nvqndndtracilsipt*stgydlvsytsistcpayncdayfltkty*i*fkyiyl*ink
kk**yifflsrtgtlly*qylfcvnk*ink*ink*ink*ink*i
Translated Amino Acid sequence (All Frames) 
Frame A:
vkkyiyyfnlynyfnfnlfw*sitnkllfqsypcsnllyyhtvqsipcl*gkysrsrdcy
*kfrfpkws*tklfltsrsqycyplwyyhckqkwlqck*f*skksl*ttstr*cfnin**
ilyvcfiryclqlqhhahqfqqfy*ilimlqpmlmmlsnhmkgnvplfdsnwlfqkqfes
esnrligvgtinsqgevivsssfvrlpdpisncpalpllkcqgghvtvyerdsnrcltnp
qcse***hsclypfnsnlinwl*fsilyfyfnlssiql*clflnknllnli*ihifink*
kkiviyfffitywysfiltisflck*ink*ink*ink*ink*in


Frame B:
LKNTFITLIFTIISISICFGSQLPTNYYFKVTHVPIYCITTPCSQYRVYKVNTQDPEIVI
ENFVFPNGVEQNYFSLQEANTAILYGTIIANRNGYNVNDFKVKRVYKQLPQGNALTSTDK
YYMFASSGIVCNYNTMPISFSNFIKY**ccnqc**c*ati*kvmyhfsiaigysksnlsq
nltd*lvlvqlivkvk*lfllll*dyqiqfqivqhyhy*nvkvvmlqftkeiqivv*qih
nvqndndtracilsipt*stgydlvsytsistcpayncdayfltkty*i*fkyiyl*ink
kk**yifflsrtgtlly*qylfcvnk*ink*ink*ink*ink*i


Frame C:
*kihlll*slqlfqfqfvlvvnyqqtiisklpmfqfivlphravntvsir*ilkiqrlll
kisfsqmelnktishfkkpillsfmvlslqtemvtm*milk*kefinnfhkvml*hqlin
iicllhqvlfaittpcpsvsaillnidnaatnvndvkqpyer*cttfr*qlvipkai*vr
i*qidwcwyn**sr*sdcffffckitrsnfklssitiikmsrwscyslrkrfkslfnkst
mfrmimtlvlvsfqfqpdqlvmi*ylillfqlvqhttvmlis*qkliefnlntyiyk*ik
knsnifffyhvlvlfyidniffv*ink*ink*ink*ink*ink
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10366-1 (Contig-U10366-1Q)
/CSM_Contig/Contig-U10366-1Q.Seq.d
         (1033 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10366-1 (Contig-U10366-1Q) /CSM_Contig/Conti...  1865  0.0
Contig-U06353-1 (Contig-U06353-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U06592-1 (Contig-U06592-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U14540-1 (Contig-U14540-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13981-1 (Contig-U13981-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13424-1 (Contig-U13424-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11737-1 (Contig-U11737-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09718-1 (Contig-U09718-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U04709-1 (Contig-U04709-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U04010-1 (Contig-U04010-1Q) /CSM_Contig/Conti...    42  0.001

>Contig-U10366-1 (Contig-U10366-1Q) /CSM_Contig/Contig-U10366-1Q.Seq.d
          Length = 1033

 Score = 1865 bits (941), Expect = 0.0
 Identities = 961/971 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaaaaaatacatttattactttaatctttacaattatttcaatttcaatttgttttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttaaaaaatacatttattactttaatctttacaattatttcaatttcaatttgttttgg 60

                                                                       
Query: 61  tagtcaattaccaacaaactattatttcaaagttacccatgttccaatttattgtattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tagtcaattaccaacaaactattatttcaaagttacccatgttccaatttattgtattac 120

                                                                       
Query: 121 cacaccgtgcagtcaataccgtgtctataaggtaaatactcaagatccagagattgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacaccgtgcagtcaataccgtgtctataaggtaaatactcaagatccagagattgttat 180

                                                                       
Query: 181 tgaaaatttcgttttcccaaatggagttgaacaaaactatttctcacttcaagaagccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaaaatttcgttttcccaaatggagttgaacaaaactatttctcacttcaagaagccaa 240

                                                                       
Query: 241 tactgctatcctttatggtactatcattgcaaacagaaatggttacaatgtaaatgattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tactgctatcctttatggtactatcattgcaaacagaaatggttacaatgtaaatgattt 300

                                                                       
Query: 301 taaagtaaaaagagtttataaacaacttccacaaggtaatgctttaacatcaactgataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaagtaaaaagagtttataaacaacttccacaaggtaatgctttaacatcaactgataa 360

                                                                       
Query: 361 atattatatgtttgcttcatcaggtattgtttgcaattacaacaccatgcccatcagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atattatatgtttgcttcatcaggtattgtttgcaattacaacaccatgcccatcagttt 420

                                                                       
Query: 421 cagcaattttattaaatattgataatgctgcaaccaatgttaatgatgttaagcaaccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagcaattttattaaatattgataatgctgcaaccaatgttaatgatgttaagcaaccat 480

                                                                       
Query: 481 atgaaaggtaatgtaccacttttcgatagcaattggttattccaaaagcaatttgagtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgaaaggtaatgtaccacttttcgatagcaattggttattccaaaagcaatttgagtca 540

                                                                       
Query: 541 gaatctaacagattgattggtgttggtacaattaatagtcaaggtgaagtgattgtttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatctaacagattgattggtgttggtacaattaatagtcaaggtgaagtgattgtttct 600

                                                                       
Query: 601 tcttcttttgtaagattaccagatccaatttcaaattgtccagcattaccattattaaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcttcttttgtaagattaccagatccaatttcaaattgtccagcattaccattattaaaa 660

                                                                       
Query: 661 tgtcaaggtggtcatgttacagtttacgaaagagattcaaatcgttgtttaacaaatcca 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgtcaaggtggtcatgttacagtttacgaaagagattcaaatcgttgtttaacaaatcca 720

                                                                       
Query: 721 caatgttcagaatgataatgacactcgtgcttgtatcctttcaattccaacctgatcaac 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caatgttcagaatgataatgacactcgtgcttgtatcctttcaattccaacctgatcaac 780

                                                                       
Query: 781 tggttatgatttagtatcttatacttctatttcaacttgtccagcatacaactgtgatgc 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggttatgatttagtatcttatacttctatttcaacttgtccagcatacaactgtgatgc 840

                                                                       
Query: 841 ttatttcttaacaaaaacttattgaatttaatttaaatacatatatttataaataaataa 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttatttcttaacaaaaacttattgaatttaatttaaatacatatatttataaataaataa 900

                                                                       
Query: 901 aaaaaaatagtaatatannnnnnnnnnatcacgtactggtactcttttatattgacaata 960
           |||||||||||||||||          |||||||||||||||||||||||||||||||||
Sbjct: 901 aaaaaaatagtaatatattttttttttatcacgtactggtactcttttatattgacaata 960

                      
Query: 961 tcttttttgtg 971
           |||||||||||
Sbjct: 961 tcttttttgtg 971


>Contig-U06353-1 (Contig-U06353-1Q) /CSM_Contig/Contig-U06353-1Q.Seq.d
          Length = 817

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 889 ataaataaataaaaaaaaatagtaata 915
           |||||||||||||| ||||||||||||
Sbjct: 785 ataaataaataaaataaaatagtaata 811


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 891 aaataaataaaaaaaaa 907
           |||||||||||||||||
Sbjct: 709 aaataaataaaaaaaaa 725


 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 895 aaataaaaaaaaata 909
           |||||||||||||||
Sbjct: 730 aaataaaaaaaaata 744


>Contig-U06592-1 (Contig-U06592-1Q) /CSM_Contig/Contig-U06592-1Q.Seq.d
          Length = 328

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 886 tttataaataaataaaaaaaaa 907
           ||||||||||||||||||||||
Sbjct: 174 tttataaataaataaaaaaaaa 195


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,085
Number of Sequences: 6905
Number of extensions: 27085
Number of successful extensions: 6580
Number of sequences better than 10.0: 1054
length of query: 1033
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1017
effective length of database: 5,564,391
effective search space: 5658985647
effective search space used: 5658985647
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.19
Homology vs DNA 
Query= Contig-U10366-1 (Contig-U10366-1Q) /CSM_Contig/Contig-U10366-1Q.Seq.d
         (1033 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   765   0.0    6
(BJ429296) Dictyostelium discoideum cDNA clone:ddv3a04, 3' e...   474   0.0    4
(AU268811) Dictyostelium discoideum vegetative cDNA clone:VS...   480   0.0    4
(AU265608) Dictyostelium discoideum vegetative cDNA clone:VS...   783   0.0    2
(BJ435541) Dictyostelium discoideum cDNA clone:ddv27o11, 3' ...   462   0.0    5
(AU270147) Dictyostelium discoideum vegetative cDNA clone:VS...   771   0.0    2
(AU270904) Dictyostelium discoideum vegetative cDNA clone:VS...   462   0.0    4
(AU265609) Dictyostelium discoideum vegetative cDNA clone:VS...   474   0.0    4
(BJ431161) Dictyostelium discoideum cDNA clone:ddv13f03, 3' ...   450   0.0    4
(AU269040) Dictyostelium discoideum vegetative cDNA clone:VS...   480   0.0    3
(AU269041) Dictyostelium discoideum vegetative cDNA clone:VS...   468   0.0    3
(AU263121) Dictyostelium discoideum vegetative cDNA clone:VS...   670   0.0    1
(AU270148) Dictyostelium discoideum vegetative cDNA clone:VS...   426   e-162  2
(BJ431675) Dictyostelium discoideum cDNA clone:ddv15g02, 3' ...   436   e-141  2
(BJ429386) Dictyostelium discoideum cDNA clone:ddv3f08, 3' e...   135   4e-52  2
(C24676) Dictyostelium discoideum slug cDNA, clone SL-X081.        42   3e-10  5
(C93026) Dictyostelium discoideum slug cDNA, clone SSF491.         42   3e-10  5
(AU037633) Dictyostelium discoideum slug cDNA, clone SSE110.       42   3e-10  5
(C90279) Dictyostelium discoideum slug cDNA, clone SSI612.         42   3e-10  5
(AU039022) Dictyostelium discoideum slug cDNA, clone SSM285.       42   4e-10  5
(AU038984) Dictyostelium discoideum slug cDNA, clone SSM240.       42   4e-10  5
(C90045) Dictyostelium discoideum slug cDNA, clone SSG136.         42   4e-10  5
(AU267909) Dictyostelium discoideum vegetative cDNA clone:VS...    42   4e-10  5
(C92441) Dictyostelium discoideum slug cDNA, clone SSE548.         42   4e-10  5
(AU034814) Dictyostelium discoideum slug cDNA, clone SLE537.       42   4e-10  5
(C89617) Dictyostelium discoideum slug cDNA, clone SSA321.         42   4e-10  5
(C89699) Dictyostelium discoideum slug cDNA, clone SSG158.         42   5e-10  5
(C92385) Dictyostelium discoideum slug cDNA, clone SSE726.         42   5e-10  5
(C90356) Dictyostelium discoideum slug cDNA, clone SSI294.         42   5e-10  5
(C90847) Dictyostelium discoideum slug cDNA, clone SSJ224.         42   5e-10  5
(C91564) Dictyostelium discoideum slug cDNA, clone SSK447.         42   6e-10  5
(C91939) Dictyostelium discoideum slug cDNA, clone SSC502.         42   6e-10  5
(C90263) Dictyostelium discoideum slug cDNA, clone SSI514.         42   9e-10  5
(C90602) Dictyostelium discoideum slug cDNA, clone SSI834.         42   3e-08  4
(C91335) Dictyostelium discoideum slug cDNA, clone SSK489.         42   3e-08  4
(C93285) Dictyostelium discoideum slug cDNA, clone SSM524.         42   3e-08  4
(C90741) Dictyostelium discoideum slug cDNA, clone SSJ893.         42   3e-08  4
(C92614) Dictyostelium discoideum slug cDNA, clone SSF318.         42   3e-08  4
(AU037935) Dictyostelium discoideum slug cDNA, clone SSE470.       42   3e-08  4
(AU039119) Dictyostelium discoideum slug cDNA, clone SSM411.       42   3e-08  4
(AU051979) Dictyostelium discoideum slug cDNA, clone SSC839.       42   4e-08  4
(AU052824) Dictyostelium discoideum slug cDNA, clone SLF169.       42   8e-08  4
(C94199) Dictyostelium discoideum slug cDNA, clone SSK528.         42   9e-08  5
(AU037575) Dictyostelium discoideum slug cDNA, clone SSD807.       42   4e-06  4
(C93710) Dictyostelium discoideum slug cDNA, clone SSL633.         42   5e-06  4
(AU060164) Dictyostelium discoideum slug cDNA, clone SLA503.       40   9e-06  4
(C89720) Dictyostelium discoideum slug cDNA, clone SSG244.         42   0.005  3
(AU052893) Dictyostelium discoideum slug cDNA, clone SLF283.       42   0.007  3
(C89945) Dictyostelium discoideum slug cDNA, clone SSG675.         42   0.008  3
(BJ356547) Dictyostelium discoideum cDNA clone:dda60m13, 3' ...    42   0.009  3
(AU061602) Dictyostelium discoideum slug cDNA, clone SLE778.       42   0.009  3
(AU052809) Dictyostelium discoideum slug cDNA, clone SLF137.       42   0.009  3
(AU033801) Dictyostelium discoideum slug cDNA, clone SLB454.       42   0.009  3
(AU034347) Dictyostelium discoideum slug cDNA, clone SLC727.       42   0.009  2
(C90775) Dictyostelium discoideum slug cDNA, clone SSJ133.         42   0.009  2
(AU051975) Dictyostelium discoideum slug cDNA, clone SSC835.       42   0.009  2
(C92229) Dictyostelium discoideum slug cDNA, clone SSD264.         42   0.009  2
(AU037778) Dictyostelium discoideum slug cDNA, clone SSE282.       42   0.009  2
(C92650) Dictyostelium discoideum slug cDNA, clone SSF685.         42   0.009  2
(C93379) Dictyostelium discoideum slug cDNA, clone SSM721.         42   0.009  2
(C89857) Dictyostelium discoideum slug cDNA, clone SSG266.         42   0.009  2
(C93181) Dictyostelium discoideum slug cDNA, clone SSM747.         42   0.009  2
(C93187) Dictyostelium discoideum slug cDNA, clone SSM753.         42   0.009  2
(C92509) Dictyostelium discoideum slug cDNA, clone SSE871.         42   0.009  2
(AU052000) Dictyostelium discoideum slug cDNA, clone SSB176.       42   0.009  2
(C92109) Dictyostelium discoideum slug cDNA, clone SSD104.         42   0.009  2
(AU051843) Dictyostelium discoideum slug cDNA, clone SSB151.       42   0.16   3
(AC140660) Pan troglodytes clone CH251-145M14, WORKING DRAFT...    42   0.17   6
(CU424490) Medicago truncatula chromosome 5 clone mth2-95h16...    38   0.28   6
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   0.32   2
(AC164369) Bos taurus clone CH240-133C10, *** SEQUENCING IN ...    48   0.66   1
(DX811208) SBA004_N15.f Sugar beet BAC library USH20 (Code S...    48   0.66   1
(CT858678) Oryza sativa Indica Group EST sequence:OSIGCRA120...    48   0.66   1
(AL086049) Arabidopsis thaliana genome survey sequence T7 en...    40   1.4    2
(AC183665) Pan troglodytes BAC clone CH251-655J2 from chromo...    44   1.6    6
(AC091047) Homo sapiens chromosome 8, clone RP11-102F4, comp...    42   1.8    3
(AJ517168) Arabidopsis thaliana GSS, clone 22B/240.                40   2.3    2
(AC021546) Homo sapiens chromosome 8, clone RP11-574O7, comp...    34   2.3    5
(CT572988) Mouse DNA sequence from clone RP23-87I2 on chromo...    46   2.6    1
(EJ672386) 1092955064298 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.6    1
(EJ663647) 1092955033674 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.6    1
(DE008381) Branchiostoma floridae DNA, clone: CH302-015F12.F...    46   2.6    1
(DE004130) Branchiostoma floridae DNA, clone: CH302-008E04.F...    46   2.6    1
(CE588605) tigr-gss-dog-17000366369090 Dog Library Canis lup...    46   2.6    1
(FE705629) Pv042B_M13R_G03.ab1 Phaseolus vulgaris cv Early g...    46   2.6    1
(AM484467) Vitis vinifera contig VV78X025992.4, whole genome...    44   2.8    2
(CU633245) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   3.2    6
(AC176247) Strongylocentrotus purpuratus clone R3-3062C9, WO...    40   3.3    4
(AU052388) Dictyostelium discoideum slug cDNA, clone SLD237.       42   3.5    2
(AJ010770) Homo sapiens hyperion gene, exons 1-50.                 44   3.5    4
(AC004013) Homo sapiens BAC clone GS1-541B18 from 7, complet...    44   3.8    3
(AU039592) Dictyostelium discoideum slug cDNA, clone SLE808.       42   4.1    2
(AC093189) Pan troglodytes clone RP43-17P3, WORKING DRAFT SE...    44   4.1    4
(AC187625) Pan troglodytes BAC clone CH251-423K24 from chrom...    44   4.1    4
(AU052114) Dictyostelium discoideum slug cDNA, clone SLA503.       42   4.3    2
(AC069127) Homo sapiens chromosome 8 clone RP11-200A13, WORK...    36   5.1    6
(AU051821) Dictyostelium discoideum slug cDNA, clone SSA840.       42   5.5    2
(CF801889) rj53h05.y1 Meloidogyne chitwoodi female SL1 pGEM ...    32   5.7    3
(AC184615) Strongylocentrotus purpuratus clone R3-3093E19, W...    40   7.1    5
(EI729049) CHORI51410K02TR BAC library from the primary brea...    36   7.4    2

>(AC116305) Dictyostelium discoideum chromosome 2 map 1005175-1418323
              strain AX4, complete sequence.
          Length = 413138

 Score =  765 bits (386), Expect(6) = 0.0
 Identities = 386/386 (100%)
 Strand = Plus / Minus


Query: 1      gttaaaaaatacatttattactttaatctttacaattatttcaatttcaatttgttttgg 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311888 gttaaaaaatacatttattactttaatctttacaattatttcaatttcaatttgttttgg 311829


Query: 61     tagtcaattaccaacaaactattatttcaaagttacccatgttccaatttattgtattac 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311828 tagtcaattaccaacaaactattatttcaaagttacccatgttccaatttattgtattac 311769


Query: 121    cacaccgtgcagtcaataccgtgtctataaggtaaatactcaagatccagagattgttat 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311768 cacaccgtgcagtcaataccgtgtctataaggtaaatactcaagatccagagattgttat 311709


Query: 181    tgaaaatttcgttttcccaaatggagttgaacaaaactatttctcacttcaagaagccaa 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311708 tgaaaatttcgttttcccaaatggagttgaacaaaactatttctcacttcaagaagccaa 311649


Query: 241    tactgctatcctttatggtactatcattgcaaacagaaatggttacaatgtaaatgattt 300
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311648 tactgctatcctttatggtactatcattgcaaacagaaatggttacaatgtaaatgattt 311589


Query: 301    taaagtaaaaagagtttataaacaacttccacaaggtaatgctttaacatcaactgataa 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311588 taaagtaaaaagagtttataaacaacttccacaaggtaatgctttaacatcaactgataa 311529


Query: 361    atattatatgtttgcttcatcaggta 386
              ||||||||||||||||||||||||||
Sbjct: 311528 atattatatgtttgcttcatcaggta 311503

 Score =  480 bits (242), Expect(6) = 0.0
 Identities = 242/242 (100%)
 Strand = Plus / Minus


Query: 488    gtaatgtaccacttttcgatagcaattggttattccaaaagcaatttgagtcagaatcta 547
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311315 gtaatgtaccacttttcgatagcaattggttattccaaaagcaatttgagtcagaatcta 311256


Query: 548    acagattgattggtgttggtacaattaatagtcaaggtgaagtgattgtttcttcttctt 607
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311255 acagattgattggtgttggtacaattaatagtcaaggtgaagtgattgtttcttcttctt 311196


Query: 608    ttgtaagattaccagatccaatttcaaattgtccagcattaccattattaaaatgtcaag 667
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311195 ttgtaagattaccagatccaatttcaaattgtccagcattaccattattaaaatgtcaag 311136


Query: 668    gtggtcatgttacagtttacgaaagagattcaaatcgttgtttaacaaatccacaatgtt 727
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311135 gtggtcatgttacagtttacgaaagagattcaaatcgttgtttaacaaatccacaatgtt 311076


Query: 728    ca 729
              ||
Sbjct: 311075 ca 311074

 Score =  210 bits (106), Expect(6) = 0.0
 Identities = 109/110 (99%)
 Strand = Plus / Minus


Query: 731    aatgataatgacactcgtgcttgtatcctttcaattccaacctgatcaactggttatgat 790
              |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 311073 aatgataatgacactcgtgcttgtatcctttcaattccaacctgctcaactggttatgat 311014


Query: 791    ttagtatcttatacttctatttcaacttgtccagcatacaactgtgatgc 840
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311013 ttagtatcttatacttctatttcaacttgtccagcatacaactgtgatgc 310964

 Score =  182 bits (92), Expect(6) = 0.0
 Identities = 92/92 (100%)
 Strand = Plus / Minus


Query: 396    attacaacaccatgcccatcagtttcagcaattttattaaatattgataatgctgcaacc 455
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311406 attacaacaccatgcccatcagtttcagcaattttattaaatattgataatgctgcaacc 311347


Query: 456    aatgttaatgatgttaagcaaccatatgaaag 487
              ||||||||||||||||||||||||||||||||
Sbjct: 311346 aatgttaatgatgttaagcaaccatatgaaag 311315

 Score = 87.7 bits (44), Expect(6) = 0.0
 Identities = 44/44 (100%)
 Strand = Plus / Minus


Query: 928    atcacgtactggtactcttttatattgacaatatcttttttgtg 971
              ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310876 atcacgtactggtactcttttatattgacaatatcttttttgtg 310833

 Score = 30.2 bits (15), Expect(6) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 381    caggtattgtttgca 395
              |||||||||||||||
Sbjct: 311420 caggtattgtttgca 311406

 Score = 42.1 bits (21), Expect(2) = 0.007
 Identities = 27/29 (93%)
 Strand = Plus / Minus


Query: 644    cattaccattattaaaatgtcaaggtggt 672
              |||| |||||||||||||||| |||||||
Sbjct: 317074 cattgccattattaaaatgtccaggtggt 317046

 Score = 30.2 bits (15), Expect(2) = 0.007
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 616    ttaccagatccaatt 630
              |||||||||||||||
Sbjct: 317102 ttaccagatccaatt 317088

 Score = 50.1 bits (25), Expect = 0.17
 Identities = 25/25 (100%)
 Strand = Plus / Minus


Query: 350    tcaactgataaatattatatgtttg 374
              |||||||||||||||||||||||||
Sbjct: 315889 tcaactgataaatattatatgtttg 315865

 Score = 32.2 bits (16), Expect(2) = 4.7
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 353    actgataaatattata 368
              ||||||||||||||||
Sbjct: 319484 actgataaatattata 319469

 Score = 30.2 bits (15), Expect(2) = 4.7
 Identities = 33/39 (84%)
 Strand = Plus / Minus


Query: 286    caatgtaaatgattttaaagtaaaaagagtttataaaca 324
              ||||| ||||||||| || || |  ||||||||||||||
Sbjct: 319551 caatggaaatgatttaaatgttattagagtttataaaca 319513

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,085,546,031
Number of extensions: 68967685
Number of successful extensions: 5776968
Number of sequences better than 10.0: 109
Length of query: 1033
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1009
Effective length of database: 97,308,875,965
Effective search space: 98184655848685
Effective search space used: 98184655848685
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.27
Homology vs Protein 
Query= Contig-U10366-1 (Contig-U10366-1Q) /CSM_Contig/Contig-U10366-1Q.Seq.d
         (1033 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   231   e-135
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...    94   4e-45
AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...    96   8e-45
EF990709_1(EF990709|pid:none) Rotavirus A strain B3458 NSP1 gene...    39   0.38
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    36   1.9
EF560708_1(EF560708|pid:none) Rotavirus A Hu/Dhaka6/BGD/2001/G11...    35   3.3
EU200799_1(EU200799|pid:none) Human rotavirus A isolate N155 NSP...    35   3.3
FJ478176_11(FJ478176|pid:none) Venturia canescens mitochondrion,...    35   4.2
EF672585_1(EF672585|pid:none) Human rotavirus A strain IAL28 non...    34   9.5
AL844506_181(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.5

>AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromosome
           2 map 1005175-1418323 strain AX4, complete sequence.
          Length = 287

 Score =  231 bits (590), Expect(4) = e-135
 Identities = 110/110 (100%), Positives = 110/110 (100%)
 Frame = +2

Query: 65  QLPTNYYFKVTHVPIYCITTPCSQYRVYKVNTQDPEIVIENFVFPNGVEQNYFSLQEANT 244
           QLPTNYYFKVTHVPIYCITTPCSQYRVYKVNTQDPEIVIENFVFPNGVEQNYFSLQEANT
Sbjct: 23  QLPTNYYFKVTHVPIYCITTPCSQYRVYKVNTQDPEIVIENFVFPNGVEQNYFSLQEANT 82

Query: 245 AILYGTIIANRNGYNVNDFKVKRVYKQLPQGNALTSTDKYYMFASSGIVC 394
           AILYGTIIANRNGYNVNDFKVKRVYKQLPQGNALTSTDKYYMFASSGIVC
Sbjct: 83  AILYGTIIANRNGYNVNDFKVKRVYKQLPQGNALTSTDKYYMFASSGIVC 132

 Score =  169 bits (429), Expect(4) = e-135
 Identities = 80/82 (97%), Positives = 81/82 (98%)
 Frame = +1

Query: 484 KGNVPLFDSNWLFQKQFESESNRLIGVGTINSQGEVIVSSSFVRLPDPISNCPALPLLKC 663
           + NVPLFDSNWLFQKQFESESNRLIGVGTINSQGEVIVSSSFVRLPDPISNCPALPLLKC
Sbjct: 162 ESNVPLFDSNWLFQKQFESESNRLIGVGTINSQGEVIVSSSFVRLPDPISNCPALPLLKC 221

Query: 664 QGGHVTVYERDSNRCLTNPQCS 729
           QGGHVTVYERDSNRCLTNPQCS
Sbjct: 222 QGGHVTVYERDSNRCLTNPQCS 243

 Score = 84.3 bits (207), Expect(4) = e-135
 Identities = 39/40 (97%), Positives = 39/40 (97%)
 Frame = +2

Query: 743 TRACILSIPT*STGYDLVSYTSISTCPAYNCDAYFLTKTY 862
           TRACILSIPT STGYDLVSYTSISTCPAYNCDAYFLTKTY
Sbjct: 248 TRACILSIPTCSTGYDLVSYTSISTCPAYNCDAYFLTKTY 287

 Score = 64.7 bits (156), Expect(4) = e-135
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +3

Query: 387 LFAITTPCPSVSAILLNIDNAATNVNDVKQPYE 485
           +  ITTPCPSVSAILLNIDNAATNVNDVKQPYE
Sbjct: 130 IVCITTPCPSVSAILLNIDNAATNVNDVKQPYE 162

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,398,594,654
Number of extensions: 25501139
Number of successful extensions: 64807
Number of sequences better than 10.0: 10
Number of HSP's gapped: 64765
Number of HSP's successfully gapped: 19
Length of query: 344
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 215
Effective length of database: 627,614,014
Effective search space: 134937013010
Effective search space used: 134937013010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.98  gvh: 0.65  alm: 0.47  top: 0.50  tms: 0.00  mit: 0.46  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 24.0 %: extracellular, including cell wall
	 16.0 %: nuclear
	 12.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi

>> prediction for Contig-U10366-1 is mit
VS (DIR, S) 6
VH (FL, L) 0
VF (FL, S) 5
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0