Contig-U10351-1
Contig ID Contig-U10351-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10351-1 (Contig-U10351-1Q) /CSM_Contig/Contig-U10351-1Q.Seq.d
ATTTTCATTAAAAGTATAAATTAAGTTTAACAACTTTAAAAAAAAAATGA
CTAGCAGAACAAAGAAATTAAAAATGGATGAAGAAGAAATTTTAAAAAAA
GAAGATGGTAGTGAAACAACATCTGAAGAGGAAAAAGAAGAAGTAGAGGA
GGAAGAAGAAGAAGATAAAAAGAGAAAACTAGTTAAAAAAACACCTGCAA
AGAAAGCACCTGCAAAAAAAGCTGCTGCAAAGAAAAAGAGTAAAGATGAA
GATGAAGATGAAGAAGAAAAAGAAGAAGAAGAAGAAACAAACAAAACAAC
AGCATCAGTATCAATTGCAATAGATAATTTAGATGAACCAAAAGTTGAAG
AAAACCAAATGAAAATTATTTCATGGAATGTTGCAGGATTTAAATCAGTA
TTGAGTAAAGGATTTACAGAGTATGTTGAAAAGGAGAATCCAGATGTATT
ATGTTTACAAGAGACAAAGATTAATCCATCCAATATAAAGAAGGATCAAA
TGCCAAAAGGATATGAATATCATTTCATTGAAGCCGATCAGAAAGGTCAT
CATGGCACTGGGGTTTTGACAAAGAAGAAACCAAATGCCATCACATTTGG
CATTGGTATTGCTAAACATGATAACGAAGGACGTGTAATTACATTAGAGT
ATGACCAATTCTATATTGTCAATACCTACATCCCAAACGCAGGCACAAGG
GGATTACAACGTTTAGATTACCGTATTAAGGAATGGGATGTTGATTTCCA
AGCTTACTTAGAGAAATTAAATGCTACCAAACCAATCATTTGGTGTGGTG
ATTTAAATGTTGCTCATACTGAAATCGATTTAAAGAATCCAAAAACTAAT
AAAAAATCAGCTGGTTTCACAATCGAAGAGAGAACAAGTTTTTCAAATTT
CTTAGAGAAAGGTTATGTTGATAGCTATAGACATTTCAATCCTGGTAAAG
AAGGTTCTTACACTTTTTGGTCTTATTTAGGTGGTGGTAGATCAAAGAAT
GTAGGTTGGAGATTAGATTATTTCGTTGTATCAAAAAGATTAATGGATTC
TATTAAAATTTCACCTTTCCATAGAACAAGTGTTATGGGTTCTGATCATT
GTCCAATTGGTGTTGTAGTTGATTTAAATTAAAAAAAAAAAAAACAAAAT
AAAAAAAAAACTATTTATAATAATAATAAAAAAAAAAAATAAATAAATAA
AAAAAAGTGTATTATTCATTATAATAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 1242
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 8349351
End point 8350593
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 8
Link to clone list U10351
List of clone(s)

est1=VFA516F,1,475
est2=VFH494F,1,514
est3=VFK370E,7,1081
est4=SSM235F,235,460
est5=VFA516Z,437,1083
est6=VFH494Z,576,1083
est7=SSM235Z,586,1243
est8=VFA616Z,687,915
Translated Amino Acid sequence
fslkv*IKFNNFKKKMTSRTKKLKMDEEEILKKEDGSETTSEEEKEEVEEEEEEDKKRKL
VKKTPAKKAPAKKAAAKKKSKDEDEDEEEKEEEEETNKTTASVSIAIDNLDEPKVEENQM
KIISWNVAGFKSVLSKGFTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYEYHFIEADQ
KGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDY
RIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNF
LEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTS
VMGSDHCPIGVVVDLN*kkkkqnkkktiynnnkkkk*inkkkciihynkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ifiksin*v*ql*kknd*qnkeikng*rrnfkkrrw**nni*rgkrrsrggrrrr*kekt
s*kntckestckkscckeke*r*r*r*rrkrrrrrnkqnnsisincnr*fr*tks*rkpn
enyfmeccri*isie*riyrvc*kgesrcimftrdkd*siqykegsnakri*isfh*srs
ersswhwgfdkeetkchhiwhwyc*t**rrtcnyirv*pilycqylhpkrrhkgittfrl
py*gmgc*fpsllreikcyqtnhlvw*fkccsy*nrfkeskn**kiswfhnrrenkffkf
lrerlc**l*tfqsw*rrflhflvlfrww*ikecrleirlfrcikkingfy*nftfp*nk
cygf*slsnwccs*fklkkkktk*kknyl****kkkink*kkvyysl**kkkkk


Frame B:
fslkv*IKFNNFKKKMTSRTKKLKMDEEEILKKEDGSETTSEEEKEEVEEEEEEDKKRKL
VKKTPAKKAPAKKAAAKKKSKDEDEDEEEKEEEEETNKTTASVSIAIDNLDEPKVEENQM
KIISWNVAGFKSVLSKGFTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYEYHFIEADQ
KGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDY
RIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNF
LEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTS
VMGSDHCPIGVVVDLN*kkkkqnkkktiynnnkkkk*inkkkciihynkkkkk


Frame C:
fh*kyklslttlkkk*laeqrn*kwmkkkf*kkkmvvkqhlkrkkkk*rrkkkkikren*
lkkhlqrkhlqkkllqrkrvkmkmkmkkkkkkkkkqtkqqhqyqlq*ii*mnqklkktk*
klfhgmlqdlnqy*vkdlqsmlkrriqmyyvykrqrlihpi*rrikcqkdmniislkpir
kvimalgf*qrrnqmpshlalvllnmitkdv*lh*smtnsilsiptsqtqaqgdynv*it
vlrngmlisklt*rn*mlpnqsfgvvi*mllilksi*riqkliknqlvsqskreqvfqis
*rkvmliaidisilvkkvltlfgli*vvvdqrm*vgd*iislyqkd*willkfhlsieqv
lwvliivqlvl*li*ikkkknkikkklfiiiikkknk*ikksvlfiiikkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10351-1 (Contig-U10351-1Q)
/CSM_Contig/Contig-U10351-1Q.Seq.d
(1242 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10351-1 (Contig-U10351-1Q) /CSM_Contig/Conti... 1673 0.0
Contig-U09686-1 (Contig-U09686-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U12503-1 (Contig-U12503-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U10383-1 (Contig-U10383-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U10207-1 (Contig-U10207-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U06860-1 (Contig-U06860-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U05896-1 (Contig-U05896-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U05146-1 (Contig-U05146-1Q) /CSM_Contig/Conti... 36 0.088
Contig-U14568-1 (Contig-U14568-1Q) /CSM_Contig/Conti... 34 0.35
Contig-U14547-1 (Contig-U14547-1Q) /CSM_Contig/Conti... 34 0.35

>Contig-U10351-1 (Contig-U10351-1Q) /CSM_Contig/Contig-U10351-1Q.Seq.d
Length = 1242

Score = 1673 bits (844), Expect = 0.0
Identities = 844/844 (100%)
Strand = Plus / Plus


Query: 287 acaaacaaaacaacagcatcagtatcaattgcaatagataatttagatgaaccaaaagtt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 acaaacaaaacaacagcatcagtatcaattgcaatagataatttagatgaaccaaaagtt 346


Query: 347 gaagaaaaccaaatgaaaattatttcatggaatgttgcaggatttaaatcagtattgagt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaagaaaaccaaatgaaaattatttcatggaatgttgcaggatttaaatcagtattgagt 406


Query: 407 aaaggatttacagagtatgttgaaaaggagaatccagatgtattatgtttacaagagaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aaaggatttacagagtatgttgaaaaggagaatccagatgtattatgtttacaagagaca 466


Query: 467 aagattaatccatccaatataaagaaggatcaaatgccaaaaggatatgaatatcatttc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aagattaatccatccaatataaagaaggatcaaatgccaaaaggatatgaatatcatttc 526


Query: 527 attgaagccgatcagaaaggtcatcatggcactggggttttgacaaagaagaaaccaaat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 attgaagccgatcagaaaggtcatcatggcactggggttttgacaaagaagaaaccaaat 586


Query: 587 gccatcacatttggcattggtattgctaaacatgataacgaaggacgtgtaattacatta 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gccatcacatttggcattggtattgctaaacatgataacgaaggacgtgtaattacatta 646


Query: 647 gagtatgaccaattctatattgtcaatacctacatcccaaacgcaggcacaaggggatta 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gagtatgaccaattctatattgtcaatacctacatcccaaacgcaggcacaaggggatta 706


Query: 707 caacgtttagattaccgtattaaggaatgggatgttgatttccaagcttacttagagaaa 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 caacgtttagattaccgtattaaggaatgggatgttgatttccaagcttacttagagaaa 766


Query: 767 ttaaatgctaccaaaccaatcatttggtgtggtgatttaaatgttgctcatactgaaatc 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ttaaatgctaccaaaccaatcatttggtgtggtgatttaaatgttgctcatactgaaatc 826


Query: 827 gatttaaagaatccaaaaactaataaaaaatcagctggtttcacaatcgaagagagaaca 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gatttaaagaatccaaaaactaataaaaaatcagctggtttcacaatcgaagagagaaca 886


Query: 887 agtttttcaaatttcttagagaaaggttatgttgatagctatagacatttcaatcctggt 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 agtttttcaaatttcttagagaaaggttatgttgatagctatagacatttcaatcctggt 946


Query: 947 aaagaaggttcttacactttttggtcttatttaggtggtggtagatcaaagaatgtaggt 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 aaagaaggttcttacactttttggtcttatttaggtggtggtagatcaaagaatgtaggt 1006


Query: 1007 tggagattagattatttcgttgtatcaaaaagattaatggattctattaaaatttcacct 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 tggagattagattatttcgttgtatcaaaaagattaatggattctattaaaatttcacct 1066


Query: 1067 ttccatagaacaagtgttatgggttctgatcattgtccaattggtgttgtagttgattta 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 ttccatagaacaagtgttatgggttctgatcattgtccaattggtgttgtagttgattta 1126


Query: 1127 aatt 1130
||||
Sbjct: 1127 aatt 1130


Score = 143 bits (72), Expect = 5e-34
Identities = 106/123 (86%)
Strand = Plus / Plus


Query: 1 attttcattaaaagtataaattaagtttaacaactttnnnnnnnnnntgactagcagaac 60
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 attttcattaaaagtataaattaagtttaacaactttaaaaaaaaaatgactagcagaac 60


Query: 61 aaagaaattaaaaatggatgaagaagaaattttnnnnnnngaagatggtagtgaaacaac 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 aaagaaattaaaaatggatgaagaagaaattttaaaaaaagaagatggtagtgaaacaac 120


Query: 121 atc 123
|||
Sbjct: 121 atc 123


>Contig-U09686-1 (Contig-U09686-1Q) /CSM_Contig/Contig-U09686-1Q.Seq.d
Length = 3255

Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 336 aaccaaaagttgaagaaaa 354
|||||||||||||||||||
Sbjct: 2718 aaccaaaagttgaagaaaa 2736


>Contig-U12503-1 (Contig-U12503-1Q) /CSM_Contig/Contig-U12503-1Q.Seq.d
Length = 1343

Score = 36.2 bits (18), Expect = 0.088
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 327 atttagatgaaccaaaag 344
||||||||||||||||||
Sbjct: 943 atttagatgaaccaaaag 960


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,583
Number of Sequences: 6905
Number of extensions: 12583
Number of successful extensions: 1307
Number of sequences better than 10.0: 149
length of query: 1242
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1226
effective length of database: 5,564,391
effective search space: 6821943366
effective search space used: 6821943366
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.19
Homology vs DNA
Query= Contig-U10351-1 (Contig-U10351-1Q) /CSM_Contig/Contig-U10351-1Q.Seq.d
(1242 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC115608) Dictyostelium discoideum chromosome 2 map 6199819... 1671 0.0 1
(U31631) Dictyostelium discoideum class II apurinic/apyrimid... 1647 0.0 1
(BJ429052) Dictyostelium discoideum cDNA clone:ddv2o03, 3' e... 1283 0.0 1
(BJ433380) Dictyostelium discoideum cDNA clone:ddv21l17, 3' ... 1251 0.0 2
(AU038980) Dictyostelium discoideum slug cDNA, clone SSM235. 1080 0.0 1
(BJ431881) Dictyostelium discoideum cDNA clone:ddv15l24, 3' ... 1007 0.0 1
(BJ415166) Dictyostelium discoideum cDNA clone:ddv21l17, 5' ... 505 e-149 2
(BJ417879) Dictyostelium discoideum cDNA clone:ddv15l24, 5' ... 502 e-137 1
(BJ429053) Dictyostelium discoideum cDNA clone:ddv2o04, 3' e... 410 e-110 1
(BJ410883) Dictyostelium discoideum cDNA clone:ddv2o03, 5' e... 373 1e-98 1
(AU074844) Dictyostelium discoideum slug cDNA, clone SSM235. 337 6e-88 1
(EC826026) SME00001420 esmbsro2 Sawyeria marylandensis cDNA,... 58 6e-13 5
(AM818978) Nicotiana tabacum EST, clone nt005145001. 42 1e-07 3
(FC793957) CBGC22610.fwd CBGC Lottia gigantea 15h 18h embryo... 56 3e-07 3
(EC762320) PSE00007964 rw_mgpallid Polysphondylium pallidum ... 44 2e-06 3
(EX858423) CBNF4482.fwd CBNF Phycomyces blakesleeanus NRRL15... 46 4e-06 2
(EX858422) CBNF4482.rev CBNF Phycomyces blakesleeanus NRRL15... 46 4e-06 2
(EX839433) CBNB7956.fwd CBNB Phycomyces blakesleeanus NRRL15... 46 4e-06 2
(EX839432) CBNB7956.rev CBNB Phycomyces blakesleeanus NRRL15... 46 4e-06 2
(FC776684) CBGB646.fwd CBGB Lottia gigantea 3,6,9,12h embryo... 56 6e-06 2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 64 1e-05 1
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 62 5e-05 1
(EH012682) USDA-FP_185558 Lysiphlebus testaceipes adult whol... 60 7e-05 2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 56 0.003 1
(CP000853) Alkaliphilus oremlandii OhILAs, complete genome. 56 0.003 1
(FC705896) CAXY3454.fwd CAXY Lottia gigantea from male gonad... 46 0.004 2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 46 0.006 2
(CU640408) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 54 0.013 1
(CU467514) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 54 0.013 1
(EX602586) 255330363 Pea aphid whole body normalized full le... 50 0.015 2
(FF298455) 279322148 Pea aphid whole body normalized full le... 50 0.015 2
(EX625615) 255434422 Pea aphid whole body normalized full le... 50 0.015 2
(EX611003) 255372806 Pea aphid whole body normalized full le... 50 0.015 2
(EX621539) 255417276 Pea aphid whole body normalized full le... 50 0.015 2
(FC728318) CBBG4699.fwd CBBG Lottia gigantea 12,15,18h embry... 44 0.015 2
(FF334116) 280456348 Pea aphid whole body normalized full le... 50 0.016 2
(CN754493) ID0AAA13AG02RM1 ApMS Acyrthosiphon pisum cDNA clo... 50 0.017 2
(CN587297) USDA-FP_130370 Acyrthosiphon pisum, Pea Aphid Acy... 50 0.018 2
(EJ010440) 1095403670323 Global-Ocean-Sampling_GS-26-01-01-1... 42 0.063 2
(ER419134) 1092963691419 Global-Ocean-Sampling_GS-35-01-01-1... 44 0.063 2
(BW046999) Ciona intestinalis cDNA, clone:cibd004e13, 5' end... 42 0.17 2
(BW286421) Ciona intestinalis cDNA, clone:cigd002p16, 5' end... 42 0.18 2
(BW056420) Ciona intestinalis cDNA, clone:cibd008f11, 5' end... 42 0.18 2
(AV878710) Ciona intestinalis cDNA, clone:rcicl54n06, 3' end... 42 0.19 2
(FF867234) CBWU12557.g1 Yutaka Satou unpublished cDNA librar... 42 0.19 2
(BW156884) Ciona intestinalis cDNA, clone:rcigd002p16, 3' en... 42 0.19 2
(X58188) D.melanogaster tn1 gene. 50 0.20 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 50 0.20 1
(AC011614) Drosophila melanogaster, chromosome X, region 16F... 50 0.20 1
(AC014369) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 50 0.20 1
(ER339895) 1092344337186 Global-Ocean-Sampling_GS-34-01-01-1... 50 0.20 1
(EJ299893) 1095390005166 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.20 1
(EJ238936) 1095328005173 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.20 1
(CN751170) ApHL3SD-III-C1 ApHL3SD Acyrthosiphon pisum cDNA c... 50 0.20 1
(EX603296) 255339538 Pea aphid whole body normalized full le... 50 0.20 1
(CP000609) Methanococcus maripaludis C5, complete genome. 50 0.20 1
(BX950229) Methanococcus maripaludis strain S2, complete seq... 50 0.20 1
(AE016877) Bacillus cereus ATCC 14579, complete genome. 50 0.20 1
(BW038337) Ciona intestinalis cDNA, clone:cibd036g18, 5' end... 42 0.21 2
(FK924961) EST_lsal_evj_947783 lsalevj mixed_tissue_mixed_st... 46 0.24 2
(EJ908339) 1093018524282 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.24 2
(EU093472) Synthetic construct Bacillus anthracis clone FLH2... 40 0.47 3
(CG841648) Ynhw2262 HW-YUBAC Bos taurus genomic clone HW-YUB... 42 0.77 2
(EJ268770) 1095351037798 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.80 1
(DU597237) OO__Ba0093B08.r OO__Ba Oryza officinalis genomic ... 48 0.80 1
(CZ653474) OM__Ba0203B23.f OM__Ba Oryza minuta genomic clone... 48 0.80 1
(BW859795) Branchiostoma floridae cDNA, neurula clone:bfne05... 48 0.80 1
(BZ773384) mcv68e06.b1 HFOSMID007 Homo sapiens genomic, geno... 44 1.1 2
(EX624654) 255428792 Pea aphid whole body normalized full le... 36 1.6 3
(EX603386) 255340845 Pea aphid whole body normalized full le... 36 1.7 3
(CR812792) Zebrafish DNA sequence from clone DKEY-33J18 in l... 46 3.2 1
(CR792415) Zebrafish DNA sequence from clone DKEY-19D22. 46 3.2 1
(BX936350) Zebrafish DNA sequence from clone CH211-237C9 in ... 46 3.2 1
(BX936303) Zebrafish DNA sequence from clone DKEY-105F21 in ... 46 3.2 1
(BX927290) Zebrafish DNA sequence from clone CH211-212K5 in ... 46 3.2 1
(BX927164) Zebrafish DNA sequence from clone DKEY-27P2 in li... 46 3.2 1
(BX897739) Zebrafish DNA sequence from clone CH211-160J20 in... 46 3.2 1
(BX663505) Zebrafish DNA sequence from clone CH211-246N15 in... 46 3.2 1
(BX649506) Zebrafish DNA sequence from clone DKEY-43L23 in l... 46 3.2 1
(BX649283) Zebrafish DNA sequence from clone DKEYP-86C4 in l... 46 3.2 1
(BX571878) Zebrafish DNA sequence from clone DKEY-265E7 in l... 46 3.2 1
(BX548067) Zebrafish DNA sequence from clone DKEY-261O4 in l... 46 3.2 1
(BX510316) Zebrafish DNA sequence from clone CH211-194J3 in ... 46 3.2 1
(BX465836) Zebrafish DNA sequence from clone CH211-59M15 in ... 46 3.2 1
(BX321870) Zebrafish DNA sequence from clone RP71-42A14 in l... 46 3.2 1
(BX296567) Zebrafish DNA sequence from clone DKEY-261P22 in ... 46 3.2 1
(BX276184) Zebrafish DNA sequence from clone CH211-236E20 in... 46 3.2 1
(BX005245) Zebrafish DNA sequence from clone DKEY-56M15 in l... 46 3.2 1
(AL935274) Zebrafish DNA sequence from clone CH211-249C2 in ... 46 3.2 1
(EF442995) Karlodinium micrum clone i cytochrome b-like and ... 46 3.2 1
(AC122720) Homo sapiens chromosome 5 clone RP11-67M9, comple... 46 3.2 1
(AC026345) Homo sapiens chromosome 3 clone RP11-467M9, WORKI... 46 3.2 1
(CT997811) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.2 1
(CT737157) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.2 1
(CR376734) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.2 1
(BX005337) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 3.2 1
(EJ605993) 1092962009372 Global-Ocean-Sampling_GS-29-01-01-1... 46 3.2 1
(ED743255) GM_WBb0106C23.r GM_WBb Glycine max genomic clone ... 46 3.2 1
(BQ050193) AGENCOURT_7048919 NIH_MGC_85 Homo sapiens cDNA cl... 46 3.2 1
(BF938831) fm82e06.y1 zebrafish gridded kidney Danio rerio c... 46 3.2 1

>(AC115608) Dictyostelium discoideum chromosome 2 map 6199819-6206243
strain AX4, complete sequence.
Length = 6424

Score = 1671 bits (843), Expect = 0.0
Identities = 843/843 (100%)
Strand = Plus / Plus


Query: 288 caaacaaaacaacagcatcagtatcaattgcaatagataatttagatgaaccaaaagttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3702 caaacaaaacaacagcatcagtatcaattgcaatagataatttagatgaaccaaaagttg 3761


Query: 348 aagaaaaccaaatgaaaattatttcatggaatgttgcaggatttaaatcagtattgagta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3762 aagaaaaccaaatgaaaattatttcatggaatgttgcaggatttaaatcagtattgagta 3821


Query: 408 aaggatttacagagtatgttgaaaaggagaatccagatgtattatgtttacaagagacaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3822 aaggatttacagagtatgttgaaaaggagaatccagatgtattatgtttacaagagacaa 3881


Query: 468 agattaatccatccaatataaagaaggatcaaatgccaaaaggatatgaatatcatttca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3882 agattaatccatccaatataaagaaggatcaaatgccaaaaggatatgaatatcatttca 3941


Query: 528 ttgaagccgatcagaaaggtcatcatggcactggggttttgacaaagaagaaaccaaatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3942 ttgaagccgatcagaaaggtcatcatggcactggggttttgacaaagaagaaaccaaatg 4001


Query: 588 ccatcacatttggcattggtattgctaaacatgataacgaaggacgtgtaattacattag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4002 ccatcacatttggcattggtattgctaaacatgataacgaaggacgtgtaattacattag 4061


Query: 648 agtatgaccaattctatattgtcaatacctacatcccaaacgcaggcacaaggggattac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4062 agtatgaccaattctatattgtcaatacctacatcccaaacgcaggcacaaggggattac 4121


Query: 708 aacgtttagattaccgtattaaggaatgggatgttgatttccaagcttacttagagaaat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4122 aacgtttagattaccgtattaaggaatgggatgttgatttccaagcttacttagagaaat 4181


Query: 768 taaatgctaccaaaccaatcatttggtgtggtgatttaaatgttgctcatactgaaatcg 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4182 taaatgctaccaaaccaatcatttggtgtggtgatttaaatgttgctcatactgaaatcg 4241


Query: 828 atttaaagaatccaaaaactaataaaaaatcagctggtttcacaatcgaagagagaacaa 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4242 atttaaagaatccaaaaactaataaaaaatcagctggtttcacaatcgaagagagaacaa 4301


Query: 888 gtttttcaaatttcttagagaaaggttatgttgatagctatagacatttcaatcctggta 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4302 gtttttcaaatttcttagagaaaggttatgttgatagctatagacatttcaatcctggta 4361


Query: 948 aagaaggttcttacactttttggtcttatttaggtggtggtagatcaaagaatgtaggtt 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4362 aagaaggttcttacactttttggtcttatttaggtggtggtagatcaaagaatgtaggtt 4421


Query: 1008 ggagattagattatttcgttgtatcaaaaagattaatggattctattaaaatttcacctt 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4422 ggagattagattatttcgttgtatcaaaaagattaatggattctattaaaatttcacctt 4481


Query: 1068 tccatagaacaagtgttatgggttctgatcattgtccaattggtgttgtagttgatttaa 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4482 tccatagaacaagtgttatgggttctgatcattgtccaattggtgttgtagttgatttaa 4541


Query: 1128 att 1130
|||
Sbjct: 4542 att 4544

Score = 73.8 bits (37), Expect = 1e-08
Identities = 37/37 (100%)
Strand = Plus / Plus


Query: 1 attttcattaaaagtataaattaagtttaacaacttt 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 3415 attttcattaaaagtataaattaagtttaacaacttt 3451

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,069,995,965
Number of extensions: 64313102
Number of successful extensions: 4975921
Number of sequences better than 10.0: 114
Length of query: 1242
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1218
Effective length of database: 97,308,875,965
Effective search space: 118522210925370
Effective search space used: 118522210925370
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10351-1 (Contig-U10351-1Q) /CSM_Contig/Contig-U10351-1Q.Seq.d
(1242 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P51173) RecName: Full=DNA-(apurinic or apyrimidinic site) lyase... 570 e-161
CP000903_3411(CP000903|pid:none) Bacillus weihenstephanensis KBA... 288 3e-76
CP000001_3459(CP000001|pid:none) Bacillus cereus E33L, complete ... 283 1e-74
AE016879_3545(AE016879|pid:none) Bacillus anthracis str. Ames, c... 280 6e-74
CP001176_3688(CP001176|pid:none) Bacillus cereus B4264, complete... 280 1e-73
AE017355_3444(AE017355|pid:none) Bacillus thuringiensis serovar ... 279 1e-73
CP000724_569(CP000724|pid:none) Alkaliphilus metalliredigens QYM... 278 4e-73
CP001186_3699(CP001186|pid:none) Bacillus cereus G9842, complete... 277 5e-73
AE016877_3555(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 277 6e-73
AE001437_216(AE001437|pid:none) Clostridium acetobutylicum ATCC ... 273 7e-72
CP000568_454(CP000568|pid:none) Clostridium thermocellum ATCC 27... 271 3e-71
BX950229_1012(BX950229|pid:none) Methanococcus maripaludis strai... 270 8e-71
CP000853_2281(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 270 8e-71
CP001032_1489(CP001032|pid:none) Opitutus terrae PB90-1, complet... 268 3e-70
CP000560_3672(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 268 4e-70
CP000609_579(CP000609|pid:none) Methanococcus maripaludis C5, co... 266 9e-70
BA000016_1174(BA000016|pid:none) Clostridium perfringens str. 13... 266 9e-70
CP001107_481(CP001107|pid:none) Eubacterium rectale ATCC 33656, ... 266 1e-69
CP000422_1523(CP000422|pid:none) Pediococcus pentosaceus ATCC 25... 265 2e-69
CP000139_2538(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 265 2e-69
FN313952_1(FN313952|pid:none) Schistosoma japonicum isolate Anhu... 265 3e-69
AM263198_1800(AM263198|pid:none) Listeria welshimeri serovar 6b ... 264 6e-69
CP000246_1348(CP000246|pid:none) Clostridium perfringens ATCC 13... 263 1e-68
BC055545_1(BC055545|pid:none) Danio rerio APEX nuclease (multifu... 263 1e-68
EF041101_1(EF041101|pid:none) Danio rerio clone 1 apurinic/apyri... 263 1e-68
AF1297(AF1297) 3'-exo-deoxyribonuclease exoA homolog lmo1782 [im... 260 6e-68
CP000885_971(CP000885|pid:none) Clostridium phytofermentans ISDg... 260 6e-68
BT082341_1(BT082341|pid:none) Anoplopoma fimbria clone afim-evh-... 259 1e-67
AP008971_258(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 258 2e-67
CP001078_1780(CP001078|pid:none) Clostridium botulinum E3 str. A... 258 3e-67
CP000742_333(CP000742|pid:none) Methanococcus vannielii SB, comp... 257 7e-67
AB450280_1(AB450280|pid:none) Gallus gallus chApex1 mRNA for APE... 251 4e-65
AP006627_1947(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 249 1e-64
AE016830_2551(AE016830|pid:none) Enterococcus faecalis V583, com... 249 2e-64
CP001072_1484(CP001072|pid:none) Helicobacter pylori Shi470, com... 249 2e-64
BA000028_511(BA000028|pid:none) Oceanobacillus iheyensis HTE831 ... 248 2e-64
AM260522_3(AM260522|pid:none) Helicobacter acinonychis str. Shee... 248 3e-64
CP001217_1490(CP001217|pid:none) Helicobacter pylori P12, comple... 248 3e-64
AE017125_928(AE017125|pid:none) Helicobacter hepaticus ATCC 5144... 247 5e-64
CP000423_932(CP000423|pid:none) Lactobacillus casei ATCC 334, co... 244 5e-63
X76912_1(X76912|pid:none) A.thaliana ref mRNA for ARP protein (p... 243 1e-62
AB171726_1(AB171726|pid:none) Macaca fascicularis brain cDNA clo... 242 2e-62
AP008955_309(AP008955|pid:none) Brevibacillus brevis NBRC 100599... 242 2e-62
(A2T7I6) RecName: Full=DNA-(apurinic or apyrimidinic site) lyase... 241 4e-62
PDBN(1BIX) MOL_ID: 1;MOL_ID: 1; MOLECULE: AP ENDONUCLEASE 1; MOL... 241 4e-62
(P23196) RecName: Full=DNA-(apurinic or apyrimidinic site) lyase... 241 4e-62
(A1YFZ3) RecName: Full=DNA-(apurinic or apyrimidinic site) lyase... 241 4e-62
(P27695) RecName: Full=DNA-(apurinic or apyrimidinic site) lyase... 241 4e-62
AY892060_1(AY892060|pid:none) Synthetic construct Homo sapiens c... 241 4e-62
AF056934_1(AF056934|pid:none) Cricetulus griseus apurinic/apyrim... 241 5e-62
(A1YES6) RecName: Full=DNA-(apurinic or apyrimidinic site) lyase... 239 1e-61
FJ358603_1(FJ358603|pid:none) Sus scrofa APEX nuclease 1 (APEX1)... 239 1e-61
AL935254_71(AL935254|pid:none) Lactobacillus plantarum strain WC... 239 1e-61
X59764_1(X59764|pid:none) Human HAP1 mRNA. 239 2e-61
(P43138) RecName: Full=DNA-(apurinic or apyrimidinic site) lyase... 238 4e-61
L27076_1(L27076|pid:none) Rattus norvegicus apurinic/apyrimidini... 236 1e-60
AF073994_2(AF073994|pid:none) Drosophila melanogaster gamma-tubu... 233 1e-59
AE014134_542(AE014134|pid:none) Drosophila melanogaster chromoso... 233 1e-59
EU952202_1(EU952202|pid:none) Zea mays clone 1222684 apurinic en... 229 2e-58
AE017261_627(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 227 6e-58
AE015927_1439(AE015927|pid:none) Clostridium tetani E88, complet... 227 6e-58
EU960024_1(EU960024|pid:none) Zea mays clone 221228 hypothetical... 222 2e-56
BT033281_1(BT033281|pid:none) Zea mays full-length cDNA clone ZM... 222 2e-56
AP003221_13(AP003221|pid:none) Oryza sativa Japonica Group genom... 219 2e-55
AP008207_2806(AP008207|pid:none) Oryza sativa (japonica cultivar... 219 2e-55
AE000666_209(AE000666|pid:none) Methanothermobacter thermautotro... 212 2e-53
AP007281_1243(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 211 6e-53
BX842656_86(BX842656|pid:none) Bdellovibrio bacteriovorus comple... 210 7e-53
BA000011_45(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA, ... 209 2e-52
CP000395_537(CP000395|pid:none) Borrelia afzelii PKo, complete g... 208 3e-52
AE017198_1632(AE017198|pid:none) Lactobacillus johnsonii NCC 533... 207 6e-52
CP000728_1458(CP000728|pid:none) Clostridium botulinum F str. La... 207 8e-52
CP000962_1568(CP000962|pid:none) Clostridium botulinum A3 str. L... 206 1e-51
CP000033_1601(CP000033|pid:none) Lactobacillus acidophilus NCFM,... 206 1e-51
CP001083_1498(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 206 2e-51
CP000049_511(CP000049|pid:none) Borrelia turicatae 91E135, compl... 206 2e-51
CP001357_1559(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 205 2e-51
AM412317_1468(AM412317|pid:none) Clostridium botulinum A str. AT... 204 4e-51
AB427152_1(AB427152|pid:none) Thermoplasma acidophilum ExoIII ge... 204 5e-51
CP000013_522(CP000013|pid:none) Borrelia garinii PBi, complete g... 203 9e-51
AF311054_1(AF311054|pid:none) Rattus norvegicus APEX (Apex) mRNA... 201 4e-50
AE000783_533(AE000783|pid:none) Borrelia burgdorferi B31, comple... 201 4e-50
CP001205_506(CP001205|pid:none) Borrelia burgdorferi ZS7, comple... 200 1e-49
AF034258_1(AF034258|pid:none) Caenorhabditis elegans exonuclease... 199 1e-49
CP000976_512(CP000976|pid:none) Borrelia duttonii Ly, complete g... 199 2e-49
CP001087_4033(CP001087|pid:none) Desulfobacterium autotrophicum ... 196 2e-48
CP000777_1736(CP000777|pid:none) Leptospira biflexa serovar Pato... 195 2e-48
CP000112_551(CP000112|pid:none) Desulfovibrio desulfuricans G20,... 195 3e-48
AP009380_367(AP009380|pid:none) Porphyromonas gingivalis ATCC 33... 195 3e-48
AM398681_62(AM398681|pid:none) Flavobacterium psychrophilum JIP0... 194 5e-48
AE017226_1721(AE017226|pid:none) Treponema denticola ATCC 35405,... 192 2e-47
CP000348_1684(CP000348|pid:none) Leptospira borgpetersenii serov... 192 2e-47
CU207366_3483(CU207366|pid:none) Gramella forsetii KT0803 comple... 192 3e-47
AL445067_271(AL445067|pid:none) Thermoplasma acidophilum complet... 191 4e-47
CP000383_3439(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 190 8e-47
FN357421_19(FN357421|pid:none) Schistosoma mansoni genome sequen... 190 8e-47
AE016823_1413(AE016823|pid:none) Leptospira interrogans serovar ... 189 1e-46
CP001404_100(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51,... 189 2e-46
AE006641_2102(AE006641|pid:none) Sulfolobus solfataricus P2, com... 188 3e-46
CP000487_1630(CP000487|pid:none) Campylobacter fetus subsp. fetu... 188 4e-46
CP001399_101(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 187 9e-46
CP000527_130(CP000527|pid:none) Desulfovibrio vulgaris subsp. vu... 182 2e-44
CP001358_868(CP001358|pid:none) Desulfovibrio desulfuricans subs... 181 5e-44
CP000517_51(CP000517|pid:none) Lactobacillus helveticus DPC 4571... 179 1e-43
CR954203_260(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 179 2e-43
CP000859_2552(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 176 1e-42
BX842655_293(BX842655|pid:none) Bdellovibrio bacteriovorus compl... 176 1e-42
CP000260_338(CP000260|pid:none) Streptococcus pyogenes MGAS10270... 176 2e-42
DQ489736_499(DQ489736|pid:none) Leuconostoc citreum KM20, comple... 175 3e-42
CP000413_32(CP000413|pid:none) Lactobacillus gasseri ATCC 33323,... 175 3e-42
CP000017_339(CP000017|pid:none) Streptococcus pyogenes MGAS5005,... 175 3e-42
CP000056_326(CP000056|pid:none) Streptococcus pyogenes MGAS6180,... 174 4e-42
CP000412_65(CP000412|pid:none) Lactobacillus delbrueckii subsp. ... 174 6e-42
CP000792_52(CP000792|pid:none) Campylobacter concisus 13826, com... 174 6e-42
CP001219_168(CP001219|pid:none) Acidithiobacillus ferrooxidans A... 174 8e-42
CP001132_345(CP001132|pid:none) Acidithiobacillus ferrooxidans A... 174 8e-42
CP000932_45(CP000932|pid:none) Campylobacter lari RM2100, comple... 173 1e-41
CP000259_342(CP000259|pid:none) Streptococcus pyogenes MGAS9429,... 172 2e-41
CP000597_91(CP000597|pid:none) Ostreococcus lucimarinus CCE9901 ... 172 2e-41
CP000414_1448(CP000414|pid:none) Leuconostoc mesenteroides subsp... 172 2e-41
CP000448_1160(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 172 2e-41
AM946015_445(AM946015|pid:none) Streptococcus uberis 0140J compl... 172 3e-41
AE009949_357(AE009949|pid:none) Streptococcus pyogenes MGAS8232,... 172 3e-41
BA000034_1561(BA000034|pid:none) Streptococcus pyogenes SSI-1 DN... 171 4e-41
CP000776_1530(CP000776|pid:none) Campylobacter hominis ATCC BAA-... 171 4e-41
CP000583_264(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 171 4e-41
CP000262_337(CP000262|pid:none) Streptococcus pyogenes MGAS10750... 171 6e-41
AP007281_1037(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 171 6e-41
CP000918_1798(CP000918|pid:none) Streptococcus pneumoniae 70585,... 170 8e-41
AE004092_297(AE004092|pid:none) Streptococcus pyogenes M1 GAS, c... 170 8e-41
AE014074_296(AE014074|pid:none) Streptococcus pyogenes MGAS315, ... 169 1e-40
CP000003_365(CP000003|pid:none) Streptococcus pyogenes MGAS10394... 169 1e-40
CP000919_1669(CP000919|pid:none) Streptococcus pneumoniae JJA, c... 169 1e-40
CP000387_1619(CP000387|pid:none) Streptococcus sanguinis SK36, c... 169 2e-40
(P0A2X3) RecName: Full=Exodeoxyribonuclease; EC=3.1.11.... 168 4e-40
AM260479_223(AM260479|pid:none) Ralstonia eutropha H16 chromosom... 167 5e-40
CP000352_149(CP000352|pid:none) Ralstonia metallidurans CH34, co... 167 7e-40
AE014133_1495(AE014133|pid:none) Streptococcus mutans UA159, com... 167 7e-40
EF137743_1(EF137743|pid:none) Treponema paraluiscuniculi ExoA (e... 167 9e-40
AM747720_493(AM747720|pid:none) Burkholderia cenocepacia J2315 c... 166 2e-39
CP000284_2478(CP000284|pid:none) Methylobacillus flagellatus KT,... 166 2e-39
DQ976593_1(DQ976593|pid:none) Ateles geoffroyi APEX1 (APEX1) gen... 166 2e-39
CP001197_2435(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 166 2e-39
CP000768_207(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 165 3e-39
BX571965_195(BX571965|pid:none) Burkholderia pseudomallei strain... 165 3e-39
AE017198_38(AE017198|pid:none) Lactobacillus johnsonii NCC 533, ... 165 3e-39
CP000090_194(CP000090|pid:none) Ralstonia eutropha JMP134 chromo... 165 4e-39
CP000408_669(CP000408|pid:none) Streptococcus suis 98HAH33, comp... 164 6e-39
CP000254_422(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 164 8e-39
CP000086_149(CP000086|pid:none) Burkholderia thailandensis E264 ... 164 8e-39
CP000767_107(CP000767|pid:none) Campylobacter curvus 525.92, com... 163 1e-38
AE017282_312(AE017282|pid:none) Methylococcus capsulatus str. Ba... 163 1e-38
CP000103_223(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 163 1e-38
AL766852_59(AL766852|pid:none) Streptococcus agalactiae NEM316 c... 163 1e-38
CP000378_2474(CP000378|pid:none) Burkholderia cenocepacia AU 105... 162 2e-38
CP000655_1997(CP000655|pid:none) Polynucleobacter necessarius su... 161 4e-38
CP000814_230(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 161 4e-38
AP009179_644(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic D... 161 5e-38
CP000025_296(CP000025|pid:none) Campylobacter jejuni RM1221, com... 161 5e-38
CP001052_303(CP001052|pid:none) Burkholderia phytofirmans PsJN c... 160 7e-38
AL111168_228(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 160 9e-38
CP000361_801(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 160 1e-37
AM421808_1890(AM421808|pid:none) Neisseria meningitidis serogrou... 160 1e-37
CP000116_254(CP000116|pid:none) Thiobacillus denitrificans ATCC ... 159 1e-37
CP000269_190(CP000269|pid:none) Janthinobacterium sp. Marseille,... 159 1e-37
CP000233_1471(CP000233|pid:none) Lactobacillus salivarius UCC118... 158 3e-37
CP001010_1453(CP001010|pid:none) Polynucleobacter necessarius su... 158 3e-37
AJ749949_959(AJ749949|pid:none) Francisella tularensis subsp. tu... 157 6e-37
CP000439_815(CP000439|pid:none) Francisella tularensis subsp. no... 157 1e-36
CP000425_756(CP000425|pid:none) Lactococcus lactis subsp. cremor... 156 1e-36
CP001020_444(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com... 156 1e-36
CP000890_346(CP000890|pid:none) Coxiella burnetii RSA 331, compl... 156 1e-36
AB427151_1(AB427151|pid:none) Sulfolobus sp. Tu B-1 ExoIII gene ... 156 2e-36
AE016828_256(AE016828|pid:none) Coxiella burnetii RSA 493, compl... 156 2e-36
CP000077_122(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63... 155 2e-36
AC159423_5(AC159423|pid:none) Trypanosoma brucei chromosome 8 cl... 155 2e-36
AJ621753_1(AJ621753|pid:none) Trypanosoma brucei brucei APE1 gen... 155 2e-36
AM406671_1728(AM406671|pid:none) Lactococcus lactis subsp. cremo... 155 3e-36
CP001019_1526(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co... 155 3e-36
AM167904_3178(AM167904|pid:none) Bordetella avium 197N complete ... 155 4e-36
EU414977_1(EU414977|pid:none) Flammeovirga yaeyamensis strain MY... 155 4e-36
U92486_1(U92486|pid:none) Trypanosoma cruzi AP-endonuclease (TcA... 154 6e-36
CP000733_1621(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 153 1e-35
CP000780_346(CP000780|pid:none) Candidatus Methanoregula boonei ... 153 1e-35
CP000450_670(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 153 1e-35
CP000089_123(CP000089|pid:none) Dechloromonas aromatica RCB, com... 152 2e-35
AL646052_140(AL646052|pid:none) Ralstonia solanacearum GMI1000 c... 152 2e-35
CP000267_3866(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 152 2e-35
CP001013_4026(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 150 9e-35
CP000555_89(CP000555|pid:none) Methylibium petroleiphilum PM1, c... 149 2e-34
CP000513_869(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 149 2e-34
BX640435_210(BX640435|pid:none) Bordetella parapertussis strain ... 148 3e-34
BX640412_25(BX640412|pid:none) Bordetella pertussis strain Toham... 148 3e-34
AM743169_392(AM743169|pid:none) Stenotrophomonas maltophilia K27... 148 3e-34
AM039952_4015(AM039952|pid:none) Xanthomonas campestris pv. vesi... 148 3e-34
CU861906_168(CU861906|pid:none) Ralstonia solanacearum strain Mo... 148 4e-34
AE008923_3847(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 148 4e-34
CP001111_295(CP001111|pid:none) Stenotrophomonas maltophilia R55... 147 8e-34
AY458646_52(AY458646|pid:none) Uncultured marine bacterium 578 c... 147 1e-33
AP006618_938(AP006618|pid:none) Nocardia farcinica IFM 10152 DNA... 146 2e-33
CP000542_1584(CP000542|pid:none) Verminephrobacter eiseniae EF01... 145 3e-33
AE013598_498(AE013598|pid:none) Xanthomonas oryzae pv. oryzae KA... 144 5e-33
AM494953_67(AM494953|pid:none) Leishmania braziliensis chromosom... 144 8e-33
CT005255_70(CT005255|pid:none) Leishmania major strain Friedlin,... 141 5e-32
AP011115_6299(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 140 9e-32
CR543861_3169(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 139 3e-31
CP000431_6181(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 138 4e-31
AP008957_2007(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 138 5e-31
BT084540_1(BT084540|pid:none) Zea mays full-length cDNA clone ZM... 137 1e-30
CP000088_1537(CP000088|pid:none) Thermobifida fusca YX, complete... 135 4e-30
CU459141_137(CU459141|pid:none) Acinetobacter baumannii str. AYE... 133 1e-29
AP009493_4310(AP009493|pid:none) Streptomyces griseus subsp. gri... 131 4e-29
CP000941_121(CP000941|pid:none) Xylella fastidiosa M12, complete... 131 6e-29
AL049659_19(AL049659|pid:none) Arabidopsis thaliana DNA chromoso... 130 1e-28
CP000529_165(CP000529|pid:none) Polaromonas naphthalenivorans CJ... 129 3e-28
CP001114_350(CP001114|pid:none) Deinococcus deserti VCD115, comp... 128 4e-28
S44297(S44297) hypothetical protein 208 - Coxiella burnetii &X7... 126 1e-27
CP000252_694(CP000252|pid:none) Syntrophus aciditrophicus SB, co... 125 3e-27
CP001229_890(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 124 7e-27
CP000381_94(CP000381|pid:none) Neisseria meningitidis 053442, co... 122 3e-26
CP000478_2308(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 120 1e-25
CP000155_6066(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 119 2e-25
BX897700_804(BX897700|pid:none) Bartonella quintana str. Toulous... 119 2e-25
CP000282_3661(CP000282|pid:none) Saccharophagus degradans 2-40, ... 119 3e-25
CP001080_1555(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 118 5e-25
AP009552_733(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 118 5e-25
CP000825_563(CP000825|pid:none) Prochlorococcus marinus str. MIT... 117 6e-25
CP000111_511(CP000111|pid:none) Prochlorococcus marinus str. MIT... 117 8e-25
CP000239_448(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, comp... 117 8e-25
AE017126_482(AE017126|pid:none) Prochlorococcus marinus subsp. m... 117 1e-24
CP001101_147(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 116 2e-24
CP001287_957(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 116 2e-24
AM778954_75(AM778954|pid:none) Microcystis aeruginosa PCC 7806 g... 116 2e-24
CP001037_2441(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 115 3e-24
CU458896_3655(CU458896|pid:none) Mycobacterium abscessus chromos... 115 4e-24
CP001108_150(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 114 5e-24
CP000806_3988(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 114 7e-24
AE000782_569(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,... 114 9e-24
CP000480_1610(CP000480|pid:none) Mycobacterium smegmatis str. MC... 114 9e-24
CP000671_545(CP000671|pid:none) Haemophilus influenzae PittEE, c... 113 1e-23
CP000113_5045(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 113 2e-23
AE016853_76(AE016853|pid:none) Pseudomonas syringae pv. tomato s... 113 2e-23
CP000672_440(CP000672|pid:none) Haemophilus influenzae PittGG, c... 112 2e-23
CP000251_429(CP000251|pid:none) Anaeromyxobacter dehalogenans 2C... 112 4e-23
CP000057_41(CP000057|pid:none) Haemophilus influenzae 86-028NP, ... 112 4e-23
CP001157_279(CP001157|pid:none) Azotobacter vinelandii DJ, compl... 110 8e-23
CP001359_456(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C... 110 1e-22
AP009152_1796(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 110 1e-22
CP001091_1033(CP001091|pid:none) Actinobacillus pleuropneumoniae... 110 1e-22
CP000750_3950(CP000750|pid:none) Kineococcus radiotolerans SRS30... 110 1e-22
CP000390_1676(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 110 1e-22
CP000687_949(CP000687|pid:none) Actinobacillus pleuropneumoniae ... 110 1e-22
CP001131_458(CP001131|pid:none) Anaeromyxobacter sp. K, complete... 109 2e-22
CP000744_6028(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 109 2e-22
CP000569_963(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 109 2e-22
CP000316_214(CP000316|pid:none) Polaromonas sp. JS666, complete ... 109 2e-22
AE004091_5328(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 109 2e-22
AE014291_847(AE014291|pid:none) Brucella suis 1330 chromosome I,... 108 3e-22
CP000708_798(CP000708|pid:none) Brucella ovis ATCC 25840 chromos... 108 3e-22
CP000712_2996(CP000712|pid:none) Pseudomonas putida F1, complete... 108 3e-22
CP000680_4356(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 108 3e-22
CP000552_549(CP000552|pid:none) Prochlorococcus marinus str. MIT... 108 4e-22
BA000040_4761(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 108 4e-22
CP000910_288(CP000910|pid:none) Renibacterium salmoninarum ATCC ... 108 5e-22
AM746676_8130(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 107 9e-22
CP000949_180(CP000949|pid:none) Pseudomonas putida W619, complet... 107 1e-21
CP000316_3366(CP000316|pid:none) Polaromonas sp. JS666, complete... 107 1e-21
CP000514_540(CP000514|pid:none) Marinobacter aquaeolei VT8, comp... 107 1e-21
BX950851_2314(BX950851|pid:none) Erwinia carotovora subsp. atros... 107 1e-21
CP001100_1284(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 107 1e-21
AB002668_22(AB002668|pid:none) Actinobacillus actinomycetemcomit... 106 1e-21
CP000887_791(CP000887|pid:none) Brucella abortus S19 chromosome ... 106 1e-21
AP008231_1503(AP008231|pid:none) Synechococcus elongatus PCC 630... 106 1e-21
CP001097_137(CP001097|pid:none) Chlorobium limicola DSM 245, com... 106 1e-21
AE008692_1401(AE008692|pid:none) Zymomonas mobilis subsp. mobili... 106 1e-21
CP000911_867(CP000911|pid:none) Brucella suis ATCC 23445 chromos... 106 2e-21
AE017340_1447(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 105 3e-21
AB010415_18(AB010415|pid:none) Actinobacillus actinomycetemcomit... 105 3e-21
CP001321_289(CP001321|pid:none) Haemophilus parasuis SH0165, com... 105 3e-21
CP000360_1989(CP000360|pid:none) Acidobacteria bacterium Ellin34... 105 3e-21
CT573326_5052(CT573326|pid:none) Pseudomonas entomophila str. L4... 105 3e-21
BA000022_2018(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 105 3e-21
CP000826_2706(CP000826|pid:none) Serratia proteamaculans 568, co... 105 4e-21
AE005674_1477(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 105 4e-21
CP000590_39(CP000590|pid:none) Ostreococcus lucimarinus CCE9901 ... 105 4e-21
CP000097_1683(CP000097|pid:none) Synechococcus sp. CC9902, compl... 105 4e-21
CP000266_1371(CP000266|pid:none) Shigella flexneri 5 str. 8401, ... 104 6e-21
AE007872_47(AE007872|pid:none) Agrobacterium tumefaciens str. C5... 104 6e-21
CP000656_4843(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 104 6e-21
CP000946_1843(CP000946|pid:none) Escherichia coli ATCC 8739, com... 104 7e-21
CP000774_3002(CP000774|pid:none) Parvibaculum lavamentivorans DS... 104 7e-21
AE014073_1416(AE014073|pid:none) Shigella flexneri 2a str. 2457T... 104 7e-21
CP000758_2337(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 104 7e-21
CP000605_258(CP000605|pid:none) Bifidobacterium longum DJO10A, c... 103 1e-20
CP001191_1377(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 103 1e-20
BX571867_176(BX571867|pid:none) Photorhabdus luminescens subsp. ... 103 1e-20
CP000356_2163(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 103 1e-20
CU928145_1879(CU928145|pid:none) Escherichia coli 55989 chromoso... 103 1e-20
AM286415_2139(AM286415|pid:none) Yersinia enterocolitica subsp. ... 103 2e-20
CP000964_3164(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 103 2e-20
CP001053_1945(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 102 3e-20
M22592_1(M22592|pid:none) E.coli xth gene encoding exonuclease I... 102 3e-20
CP000769_4097(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 102 3e-20
CP001096_3142(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 102 3e-20
AE016827_1048(AE016827|pid:none) Mannheimia succiniciproducens M... 102 4e-20
AE004091_4171(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 102 4e-20
CP000095_523(CP000095|pid:none) Prochlorococcus marinus str. NAT... 102 4e-20
AE017143_1454(AE017143|pid:none) Haemophilus ducreyi strain 3500... 102 4e-20
CP001099_107(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 101 5e-20
AE005174_2501(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 101 5e-20
AY658530_1(AY658530|pid:none) Synthetic construct Peudomonas aer... 101 5e-20
CP000647_1192(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 101 6e-20
AP006725_2019(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 101 6e-20
CP001052_2553(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 101 6e-20
CP000383_2032(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 101 6e-20
CP000243_1911(CP000243|pid:none) Escherichia coli UTI89, complet... 100 8e-20
AE014075_2087(AE014075|pid:none) Escherichia coli CFT073, comple... 100 8e-20
CP000438_787(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA1... 100 8e-20
CP000970_1382(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 100 8e-20
AP008232_1363(AP008232|pid:none) Sodalis glossinidius str. 'mors... 100 8e-20
AD2787(AD2787) exonuclease III [imported] - Agrobacterium tumefa... 100 1e-19
CP000284_172(CP000284|pid:none) Methylobacillus flagellatus KT, ... 100 1e-19
CP000857_2344(CP000857|pid:none) Salmonella enterica subsp. ente... 100 1e-19
CP000738_1145(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 100 1e-19
CP000514_1467(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 100 1e-19
AD0264(AD0264) exodeoxyribonuclease III (EC 3.1.11.2) [imported]... 100 2e-19
CP000270_2890(CP000270|pid:none) Burkholderia xenovorans LB400 c... 100 2e-19
CP000613_995(CP000613|pid:none) Rhodospirillum centenum SW, comp... 100 2e-19
CP000248_156(CP000248|pid:none) Novosphingobium aromaticivorans ... 100 2e-19
AM933172_1732(AM933172|pid:none) Salmonella enterica subsp. ente... 99 2e-19
AL591688_1524(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 99 2e-19
AL591688_1654(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 99 3e-19
CP000250_2748(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 99 3e-19
CP000271_797(CP000271|pid:none) Burkholderia xenovorans LB400 ch... 98 5e-19
CP000822_1727(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 98 5e-19
CP001600_1575(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 98 5e-19
CP001103_2406(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 98 7e-19
CP001349_3137(CP001349|pid:none) Methylobacterium nodulans ORS 2... 98 7e-19
CP000450_204(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 97 9e-19
CP000116_2435(CP000116|pid:none) Thiobacillus denitrificans ATCC... 97 1e-18
CU633750_2020(CU633750|pid:none) Cupriavidus taiwanensis str. LM... 97 1e-18
AP007255_2533(AP007255|pid:none) Magnetospirillum magneticum AMB... 97 2e-18
CP000700_168(CP000700|pid:none) Sphingomonas wittichii RW1 plasm... 97 2e-18
CP000144_437(CP000144|pid:none) Rhodobacter sphaeroides 2.4.1 ch... 97 2e-18
AE006470_2107(AE006470|pid:none) Chlorobium tepidum TLS, complet... 97 2e-18
CP000089_3618(CP000089|pid:none) Dechloromonas aromatica RCB, co... 96 2e-18
CP000237_398(CP000237|pid:none) Neorickettsia sennetsu strain Mi... 96 2e-18
CT971583_1819(CT971583|pid:none) Synechococcus WH7803 complete g... 96 2e-18
AM849034_2817(AM849034|pid:none) Clavibacter michiganensis subsp... 96 2e-18
AM910990_347(AM910990|pid:none) Plasmodium knowlesi strain H chr... 96 2e-18
FM954972_967(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 96 3e-18
CT978603_1646(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 96 3e-18
CP000463_2599(CP000463|pid:none) Rhodopseudomonas palustris BisA... 96 3e-18
(Q5E9N9) RecName: Full=DNA-(apurinic or apyrimidinic site) lyase... 96 3e-18
CP000884_4979(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 95 6e-18
EF677575_1(EF677575|pid:none) Picea sitchensis clone WS02771_C01... 95 6e-18
CP000847_961(CP000847|pid:none) Rickettsia akari str. Hartford, ... 94 8e-18
CP000544_2252(CP000544|pid:none) Halorhodospira halophila SL1, c... 94 8e-18
CP000633_1963(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 94 8e-18
AE017282_2917(AE017282|pid:none) Methylococcus capsulatus str. B... 94 1e-17
CP000675_744(CP000675|pid:none) Legionella pneumophila str. Corb... 94 1e-17
CR555306_595(CR555306|pid:none) Azoarcus sp. EbN1 complete genome. 94 1e-17
CP000115_1803(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 94 1e-17
CP000529_2751(CP000529|pid:none) Polaromonas naphthalenivorans C... 94 1e-17
CP000087_205(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 94 1e-17
AM711867_983(AM711867|pid:none) Clavibacter michiganensis subsp.... 94 1e-17
CR628336_703(CR628336|pid:none) Legionella pneumophila str. Pari... 94 1e-17
AE017354_630(AE017354|pid:none) Legionella pneumophila subsp. pn... 94 1e-17
AE017180_1529(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 94 1e-17
CP001503_2361(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 93 2e-17
CP001151_488(CP001151|pid:none) Rhodobacter sphaeroides KD131 ch... 93 2e-17
CP000578_75(CP000578|pid:none) Rhodobacter sphaeroides ATCC 1702... 93 2e-17
CP001074_1870(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 93 2e-17
CP000577_1305(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 92 3e-17
CP000868_1121(CP000868|pid:none) Burkholderia multivorans ATCC 1... 92 3e-17
CP000489_923(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 92 4e-17
CP000319_1667(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 92 4e-17
BX548175_1680(BX548175|pid:none) Prochlorococcus marinus MIT9313... 92 5e-17
AE004969_1421(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, ... 92 5e-17
AP009044_802(AP009044|pid:none) Corynebacterium glutamicum R DNA... 92 5e-17
CP001213_705(CP001213|pid:none) Bifidobacterium animalis subsp. ... 92 5e-17
CU468135_1569(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 91 6e-17
CP000447_1409(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 91 6e-17
BC044527_1(BC044527|pid:none) Danio rerio zgc:55889, mRNA (cDNA ... 91 6e-17
CT573326_1908(CT573326|pid:none) Pseudomonas entomophila str. L4... 91 6e-17
CP001150_970(CP001150|pid:none) Rhodobacter sphaeroides KD131 ch... 91 8e-17
CP001111_3964(CP001111|pid:none) Stenotrophomonas maltophilia R5... 91 8e-17
CP001096_3665(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 91 8e-17
CP000539_1170(CP000539|pid:none) Acidovorax sp. JS42, complete g... 91 1e-16
BX927149_331(BX927149|pid:none) Corynebacterium glutamicum ATCC ... 91 1e-16
CP001392_1102(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 91 1e-16
CP000283_2792(CP000283|pid:none) Rhodopseudomonas palustris BisB... 90 1e-16
CP001277_602(CP001277|pid:none) Candidatus Hamiltonella defensa ... 90 1e-16
BA000021_371(BA000021|pid:none) Wigglesworthia glossinidia endos... 90 1e-16
CP000699_3883(CP000699|pid:none) Sphingomonas wittichii RW1, com... 90 2e-16
AM421808_1613(AM421808|pid:none) Neisseria meningitidis serogrou... 90 2e-16
AE002098_379(AE002098|pid:none) Neisseria meningitidis MC58, com... 90 2e-16
AE006914_1028(AE006914|pid:none) Rickettsia conorii str. Malish ... 89 2e-16
CP001227_785(CP001227|pid:none) Rickettsia peacockii str. Rustic... 89 2e-16
CP001068_1920(CP001068|pid:none) Ralstonia pickettii 12J chromos... 89 2e-16
CP001013_1239(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 89 3e-16
CP001612_801(CP001612|pid:none) Rickettsia africae ESF-5, comple... 89 3e-16
AB072498_1(AB072498|pid:none) Mus musculus Apex2 mRNA for apurin... 89 3e-16
CP001154_2433(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 89 3e-16
AE003852_1830(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 89 4e-16
BC127530_1(BC127530|pid:none) Rattus norvegicus similar to apuri... 89 4e-16
CP000282_1991(CP000282|pid:none) Saccharophagus degradans 2-40, ... 89 4e-16
BC077433_1(BC077433|pid:none) Xenopus laevis APEX nuclease (apur... 89 4e-16
AK021248_1(AK021248|pid:none) Mus musculus 7 days embryo whole b... 89 4e-16
CP000934_1689(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 89 4e-16
CP000949_2387(CP000949|pid:none) Pseudomonas putida W619, comple... 89 4e-16
CP000473_6635(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 88 5e-16
AF119046_1(AF119046|pid:none) Homo sapiens APE2 protein (APE2) m... 88 5e-16
CP000264_2815(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 88 5e-16
CP000390_1077(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 88 5e-16
CP000010_1496(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 88 7e-16
CP000683_753(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 88 7e-16
AE017196_893(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 88 7e-16
CP000512_2085(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 88 7e-16
CP000124_2727(CP000124|pid:none) Burkholderia pseudomallei 1710b... 88 7e-16
CP000494_3571(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 88 7e-16
CP001391_793(CP001391|pid:none) Wolbachia sp. wRi, complete geno... 88 7e-16
CP000926_2870(CP000926|pid:none) Pseudomonas putida GB-1, comple... 88 7e-16
CP000931_2604(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 87 9e-16
AE008922_1968(AE008922|pid:none) Xanthomonas campestris pv. camp... 87 9e-16
AM920689_2325(AM920689|pid:none) Xanthomonas campestris pv. camp... 87 9e-16
CP000381_1663(CP000381|pid:none) Neisseria meningitidis 053442, ... 87 9e-16
CP000851_1634(CP000851|pid:none) Shewanella pealeana ATCC 700345... 87 9e-16
CP001132_349(CP001132|pid:none) Acidithiobacillus ferrooxidans A... 87 9e-16
CP000304_3038(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 87 1e-15
CP000472_1811(CP000472|pid:none) Shewanella piezotolerans WP3, c... 87 1e-15
CP001116_166(CP001116|pid:none) Deinococcus deserti VCD115 plasm... 87 1e-15
CP001016_1383(CP001016|pid:none) Beijerinckia indica subsp. indi... 87 2e-15
CP000086_1818(CP000086|pid:none) Burkholderia thailandensis E264... 87 2e-15
CU459003_2816(CU459003|pid:none) Magnetospirillum gryphiswaldens... 86 2e-15
CP000830_1879(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 86 2e-15
CP000697_936(CP000697|pid:none) Acidiphilium cryptum JF-5, compl... 86 2e-15
CP001025_2033(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 86 2e-15
AL034558_24(AL034558|pid:none) Plasmodium falciparum MAL3P2, com... 86 2e-15
AP009384_2812(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 86 2e-15
BX571965_2335(BX571965|pid:none) Burkholderia pseudomallei strai... 86 2e-15
CP000409_291(CP000409|pid:none) Rickettsia canadensis str. McKie... 86 2e-15
CP000440_2174(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 86 3e-15
AE008692_1699(AE008692|pid:none) Zymomonas mobilis subsp. mobili... 86 3e-15
CP000766_1059(CP000766|pid:none) Rickettsia rickettsii str. Iowa... 86 3e-15
CP000712_2755(CP000712|pid:none) Pseudomonas putida F1, complete... 86 3e-15
AE008923_2000(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 86 3e-15
CP000053_1021(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 86 3e-15
AM167904_1627(AM167904|pid:none) Bordetella avium 197N complete ... 86 3e-15
AB171333_1(AB171333|pid:none) Macaca fascicularis brain cDNA clo... 86 3e-15
AM902716_2900(AM902716|pid:none) Bordetella petrii strain DSM 12... 86 4e-15
CP000509_1046(CP000509|pid:none) Nocardioides sp. JS614, complet... 86 4e-15
CP000961_2899(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 86 4e-15
AE014184_744(AE014184|pid:none) Tropheryma whipplei str. Twist, ... 86 4e-15
BX572603_223(BX572603|pid:none) Rhodopseudomonas palustris CGA00... 85 5e-15
CP000083_3087(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 85 5e-15
CP000874_2022(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN... 85 5e-15
CP000644_2757(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 85 6e-15
AM260479_1352(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 85 6e-15
EU123928_1(EU123928|pid:none) Streptomyces pristinaespiralis exo... 85 6e-15
CP000090_1285(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 85 6e-15
CU633749_1256(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 85 6e-15
AE014184_685(AE014184|pid:none) Tropheryma whipplei str. Twist, ... 84 8e-15
CP000409_868(CP000409|pid:none) Rickettsia canadensis str. McKie... 84 8e-15
CP000362_2946(CP000362|pid:none) Roseobacter denitrificans OCh 1... 84 1e-14
AP008981_179(AP008981|pid:none) Orientia tsutsugamushi str. Iked... 84 1e-14
CP000555_2065(CP000555|pid:none) Methylibium petroleiphilum PM1,... 84 1e-14
BA000040_4069(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 84 1e-14
CP000009_1690(CP000009|pid:none) Gluconobacter oxydans 621H, com... 84 1e-14
CT573213_1825(CT573213|pid:none) Frankia alni str. ACN14A chromo... 84 1e-14
AM889285_2228(AM889285|pid:none) Gluconacetobacter diazotrophicu... 83 2e-14
CP000781_4202(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 83 2e-14
CP000471_2438(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 83 2e-14
CP001281_1416(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 83 2e-14
CP001001_2878(CP001001|pid:none) Methylobacterium radiotolerans ... 83 2e-14
AK088918_1(AK088918|pid:none) Mus musculus 2 days neonate thymus... 83 2e-14
CP001157_2791(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 83 2e-14
AE003849_1922(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 83 2e-14
CP000503_1574(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 83 2e-14
CP000301_1191(CP000301|pid:none) Rhodopseudomonas palustris BisB... 83 2e-14
BA000037_2334(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 82 3e-14
AE016795_1949(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos... 82 4e-14
CP000075_2475(CP000075|pid:none) Pseudomonas syringae pv. syring... 82 4e-14
CP000463_3616(CP000463|pid:none) Rhodopseudomonas palustris BisA... 82 4e-14
CP001029_1878(CP001029|pid:none) Methylobacterium populi BJ001, ... 82 4e-14
AY658547_1(AY658547|pid:none) Synthetic construct Peudomonas aer... 82 4e-14
CP001189_440(CP001189|pid:none) Gluconacetobacter diazotrophicus... 82 4e-14
AP008981_1223(AP008981|pid:none) Orientia tsutsugamushi str. Ike... 82 4e-14
CP000087_258(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 82 4e-14
CP000394_2002(CP000394|pid:none) Granulibacter bethesdensis CGDN... 82 5e-14
CU062460_2(CU062460|pid:none) Onchocerca Wolbachia Sequence Frag... 82 5e-14
CP000580_556(CP000580|pid:none) Mycobacterium sp. JLS, complete ... 82 5e-14
AP011115_1894(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 82 5e-14
CP000283_577(CP000283|pid:none) Rhodopseudomonas palustris BisB5... 81 7e-14
CP000444_1505(CP000444|pid:none) Shewanella sp. MR-7, complete g... 81 7e-14
CP000941_947(CP000941|pid:none) Xylella fastidiosa M12, complete... 81 7e-14
AE009442_824(AE009442|pid:none) Xylella fastidiosa Temecula1, co... 81 7e-14
CP000680_2417(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 81 7e-14
Z81108_2(Z81108|pid:none) Caenorhabditis elegans Cosmid R09B3, c... 81 7e-14
CP001298_2109(CP001298|pid:none) Methylobacterium chloromethanic... 81 7e-14

>(P51173) RecName: Full=DNA-(apurinic or apyrimidinic site) lyase;
EC=4.2.99.18; AltName: Full=Class II
apurinic/apyrimidinic(AP)-endonuclease;
&AC115608_2(AC115608|pid:none)
Length = 361

Score = 570 bits (1468), Expect = e-161
Identities = 274/274 (100%), Positives = 274/274 (100%)
Frame = +2

Query: 305 SVSIAIDNLDEPKVEENQMKIISWNVAGFKSVLSKGFTEYVEKENPDVLCLQETKINPSN 484
SVSIAIDNLDEPKVEENQMKIISWNVAGFKSVLSKGFTEYVEKENPDVLCLQETKINPSN
Sbjct: 87 SVSIAIDNLDEPKVEENQMKIISWNVAGFKSVLSKGFTEYVEKENPDVLCLQETKINPSN 146

Query: 485 IKKDQMPKGYEYHFIEADQKGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYDQFY 664
IKKDQMPKGYEYHFIEADQKGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYDQFY
Sbjct: 147 IKKDQMPKGYEYHFIEADQKGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYDQFY 206

Query: 665 IVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPK 844
IVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPK
Sbjct: 207 IVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPK 266

Query: 845 TNKKSAGFTIEERTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYF 1024
TNKKSAGFTIEERTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYF
Sbjct: 267 TNKKSAGFTIEERTSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYF 326

Query: 1025 VVSKRLMDSIKISPFHRTSVMGSDHCPIGVVVDL 1126
VVSKRLMDSIKISPFHRTSVMGSDHCPIGVVVDL
Sbjct: 327 VVSKRLMDSIKISPFHRTSVMGSDHCPIGVVVDL 360

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,476,198,423
Number of extensions: 30035234
Number of successful extensions: 66447
Number of sequences better than 10.0: 761
Number of HSP's gapped: 64726
Number of HSP's successfully gapped: 809
Length of query: 414
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 283
Effective length of database: 621,205,444
Effective search space: 175801140652
Effective search space used: 175801140652
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.54 gvh: 0.12 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.03
nuc: 0.07 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U10351-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 4
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0