Contig-U10314-1
Contig ID Contig-U10314-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10314-1 (Contig-U10314-1Q) /CSM_Contig/Contig-U10314-1Q.Seq.d
ATTTTATTCACAATGAAATNATTAGCATTATTGTTATCGTTATTAATCAA
TTTTTCTATTGGTAGTTATATAAATTTCATCCCATATGATAATTCAGATT
GCACTGGAGCAATCAACGGGGGAGGTTGGTCTATTTTGGAGTATGCTTGT
TTTTCAATCGATGTCAGATACAATTACCAATTTACAACCCATACTTTAAA
TGGTGAAGGATTTGTTCAATGGACTCAATTCCCAAGAGTTGTAGGAAAAA
CACAATGTTTTTATCAAGACTTACCAATAAGTAATGCATCAATTGGATCA
TGTTATAAGAATAACCCTCTATCAACATTTGATATCTTTCGTTCATTACC
ATCAAATCAATATTATTTAATTTCAGTTACAAGTGAACCATTTTACCCAA
CTAATCAAGCAGGTATGATTGTTTTACAATATATGGGTAATGGTGAATGT
TCAAATGATAATGTAGAAATAATGCAATATTTTACAAATAACACTCAAAG
TGAAGATGGTATAACTGGTATTCAAATGAAATGGTATTGTAATGATGAAA
ATGAACCATATGAAACTCAATGTTTTAATGGAAAGAACTGTTTTGATATG
CCACAACAATACAAATGTTCACCAACTCATCCATTCTTCAATACATCCGA
TGAAATTTCAGGTGGTACTGGTGCTGGTGATTATTCAGGTACTGGTTCAG
GAAGTAGTAGTGGTAATAGTGGTACTAGCGATGGAGGTAGCAGTGGTTCT
GGTTCTGGTTCTGGAAGTGGTGCATTTATCTCTATCATTGATCAAAATNA
TAAAAATAATAACAAAAATAATAACAAAAACAAAAACAATAATAATAATA
ATAATATTACAACCAATATAAAAATCAA

Gap no gap
Contig length 878
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3975635
End point 3976516
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U10314
List of clone(s)

est1=VFJ553E,1,879
est2=SSF726F,18,761
Translated Amino Acid sequence
ILFTMKXLALLLSLLINFSIGSYINFIPYDNSDCTGAINGGGWSILEYACFSIDVRYNYQ
FTTHTLNGEGFVQWTQFPRVVGKTQCFYQDLPISNASIGSCYKNNPLSTFDIFRSLPSNQ
YYLISVTSEPFYPTNQAGMIVLQYMGNGECSNDNVEIMQYFTNNTQSEDGITGIQMKWYC
NDENEPYETQCFNGKNCFDMPQQYKCSPTHPFFNTSDEISGGTGAGDYSGTGSGSSSGNS
GTSDGGSSGSGSGSGSGAFISIIDQNXKNNNKNNNKNKNNNNNNNITTNIKI


Translated Amino Acid sequence (All Frames)
Frame A:
ILFTMKXLALLLSLLINFSIGSYINFIPYDNSDCTGAINGGGWSILEYACFSIDVRYNYQ
FTTHTLNGEGFVQWTQFPRVVGKTQCFYQDLPISNASIGSCYKNNPLSTFDIFRSLPSNQ
YYLISVTSEPFYPTNQAGMIVLQYMGNGECSNDNVEIMQYFTNNTQSEDGITGIQMKWYC
NDENEPYETQCFNGKNCFDMPQQYKCSPTHPFFNTSDEISGGTGAGDYSGTGSGSSSGNS
GTSDGGSSGSGSGSGSGAFISIIDQNXKNNNKNNNKNKNNNNNNNITTNIKI


Frame B:
fysq*nx*hycyry*sifllvvi*isshmiiqialeqstgevglfwsmlvfqsmsdtitn
lqpil*mvkdlfnglnsqel*ekhnvfiktyq*vmhqldhviritlyqhlisfvhyhqin
ii*fqlqvnhftqlikqv*lfyniwvmvnvqmim*k*cnilqitlkvkmv*lvfk*ngiv
mmkmnhmklnvlmertvlichnntnvhqlihssihpmkfqvvlvlviiqvlvqevvvviv
vlamevavvlvlvlevvhlslslikxikiitkiitktktiiiiiilqpi*ks


Frame C:
fihnexisiivivinqffyw*lykfhpi**frlhwsnqrgrlvyfgvclffnrcqiqlpi
ynpyfkw*ricsmdsipkscrkntmflsrltnk*cinwiml*e*psini*ylsfitiksi
lfnfsyk*tilpn*ssrydcftiyg*w*mfk**crnnaifyk*hsk*rwynwysnemvl*
**k*ti*nsmf*wkelf*yattiqmftnssilqyir*nfrwywcw*lfrywfrk**w**w
y*rwr*qwfwfwfwkwciylyh*skx*k**qk**qkqkq*****yynqyknq


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10314-1 (Contig-U10314-1Q)
/CSM_Contig/Contig-U10314-1Q.Seq.d
(878 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10314-1 (Contig-U10314-1Q) /CSM_Contig/Conti... 1564 0.0
Contig-U10378-1 (Contig-U10378-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U11404-1 (Contig-U11404-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U09658-1 (Contig-U09658-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U05943-1 (Contig-U05943-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U05309-1 (Contig-U05309-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U13017-1 (Contig-U13017-1Q) /CSM_Contig/Conti... 36 0.062
Contig-U12770-1 (Contig-U12770-1Q) /CSM_Contig/Conti... 36 0.062
Contig-U11949-1 (Contig-U11949-1Q) /CSM_Contig/Conti... 36 0.062
Contig-U05105-1 (Contig-U05105-1Q) /CSM_Contig/Conti... 36 0.062

>Contig-U10314-1 (Contig-U10314-1Q) /CSM_Contig/Contig-U10314-1Q.Seq.d
Length = 878

Score = 1564 bits (789), Expect = 0.0
Identities = 792/792 (100%)
Strand = Plus / Plus


Query: 1 attttattcacaatgaaatnattagcattattgttatcgttattaatcaatttttctatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttattcacaatgaaatnattagcattattgttatcgttattaatcaatttttctatt 60


Query: 61 ggtagttatataaatttcatcccatatgataattcagattgcactggagcaatcaacggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagttatataaatttcatcccatatgataattcagattgcactggagcaatcaacggg 120


Query: 121 ggaggttggtctattttggagtatgcttgtttttcaatcgatgtcagatacaattaccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggaggttggtctattttggagtatgcttgtttttcaatcgatgtcagatacaattaccaa 180


Query: 181 tttacaacccatactttaaatggtgaaggatttgttcaatggactcaattcccaagagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttacaacccatactttaaatggtgaaggatttgttcaatggactcaattcccaagagtt 240


Query: 241 gtaggaaaaacacaatgtttttatcaagacttaccaataagtaatgcatcaattggatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtaggaaaaacacaatgtttttatcaagacttaccaataagtaatgcatcaattggatca 300


Query: 301 tgttataagaataaccctctatcaacatttgatatctttcgttcattaccatcaaatcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgttataagaataaccctctatcaacatttgatatctttcgttcattaccatcaaatcaa 360


Query: 361 tattatttaatttcagttacaagtgaaccattttacccaactaatcaagcaggtatgatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tattatttaatttcagttacaagtgaaccattttacccaactaatcaagcaggtatgatt 420


Query: 421 gttttacaatatatgggtaatggtgaatgttcaaatgataatgtagaaataatgcaatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttttacaatatatgggtaatggtgaatgttcaaatgataatgtagaaataatgcaatat 480


Query: 481 tttacaaataacactcaaagtgaagatggtataactggtattcaaatgaaatggtattgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttacaaataacactcaaagtgaagatggtataactggtattcaaatgaaatggtattgt 540


Query: 541 aatgatgaaaatgaaccatatgaaactcaatgttttaatggaaagaactgttttgatatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatgatgaaaatgaaccatatgaaactcaatgttttaatggaaagaactgttttgatatg 600


Query: 601 ccacaacaatacaaatgttcaccaactcatccattcttcaatacatccgatgaaatttca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccacaacaatacaaatgttcaccaactcatccattcttcaatacatccgatgaaatttca 660


Query: 661 ggtggtactggtgctggtgattattcaggtactggttcaggaagtagtagtggtaatagt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggtggtactggtgctggtgattattcaggtactggttcaggaagtagtagtggtaatagt 720


Query: 721 ggtactagcgatggaggtagcagtggttctggttctggttctggaagtggtgcatttatc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggtactagcgatggaggtagcagtggttctggttctggttctggaagtggtgcatttatc 780


Query: 781 tctatcattgat 792
||||||||||||
Sbjct: 781 tctatcattgat 792


Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 857 ttacaaccaatataaaaatcaa 878
||||||||||||||||||||||
Sbjct: 857 ttacaaccaatataaaaatcaa 878


>Contig-U10378-1 (Contig-U10378-1Q) /CSM_Contig/Contig-U10378-1Q.Seq.d
Length = 1156

Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 744 tggttctggttctggttctggaagtggt 771
||||||||| ||||||||||||||||||
Sbjct: 440 tggttctggatctggttctggaagtggt 467


>Contig-U11404-1 (Contig-U11404-1Q) /CSM_Contig/Contig-U11404-1Q.Seq.d
Length = 1628

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 744 tggttctggttctggttctgg 764
|||||||||||||||||||||
Sbjct: 1339 tggttctggttctggttctgg 1319


Score = 32.2 bits (16), Expect = 0.97
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 749 ctggttctggttctgg 764
||||||||||||||||
Sbjct: 1340 ctggttctggttctgg 1325


Score = 32.2 bits (16), Expect = 0.97
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 744 tggttctggttctggt 759
||||||||||||||||
Sbjct: 1333 tggttctggttctggt 1318


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,532
Number of Sequences: 6905
Number of extensions: 11532
Number of successful extensions: 1336
Number of sequences better than 10.0: 171
length of query: 878
length of database: 5,674,871
effective HSP length: 16
effective length of query: 862
effective length of database: 5,564,391
effective search space: 4796505042
effective search space used: 4796505042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.19
Homology vs DNA
Query= Contig-U10314-1 (Contig-U10314-1Q) /CSM_Contig/Contig-U10314-1Q.Seq.d
(878 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ414847) Dictyostelium discoideum cDNA clone:ddv20i13, 5' ... 910 0.0 2
(BJ433042) Dictyostelium discoideum cDNA clone:ddv20i13, 3' ... 938 0.0 1
(AU073022) Dictyostelium discoideum slug cDNA, clone SSF726. 470 e-128 1
(EK015333) 1092955228261 Global-Ocean-Sampling_GS-31-01-01-1... 36 6e-04 3
(EK374123) 1095469431258 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.13 2
(CP000497) Pichia stipitis CBS 6054 chromosome 3, complete s... 50 0.14 1
(DE985111) Macropus eugenii DNA, BAC clone: MEB1-195F10_F, 5... 50 0.14 1
(FD392718) 1106162222154 Cryptosporidium muris (strain RN66)... 38 0.41 2
(DR168633) RTPHOS1_26_G06.g1_A029 Roots minus phosphorous Pi... 34 0.41 2
(DR168560) RTPHOS1_26_G06.b1_A029 Roots minus phosphorous Pi... 34 0.42 2
(CU151888) Zebrafish DNA sequence from clone CH211-208J14. 48 0.56 1
(BX927334) Zebrafish DNA sequence from clone CH211-112H5 in ... 48 0.56 1
(BX548007) Zebrafish DNA sequence from clone CH211-93A2 in l... 48 0.56 1
(AC147382) Pan troglodytes BAC clone RP43-171M24 from chromo... 48 0.56 1
(EK357118) 1095468632874 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.56 1
(AL228753) Tetraodon nigroviridis genome survey sequence PUC... 48 0.56 1
(DE886288) Macropus eugenii DNA, BAC clone: MEB1-061D11_F, 5... 48 0.56 1
(CC069871) CSU-K33r.30O19.T7 CSU-K33r Aedes aegypti genomic ... 48 0.56 1
(BJ414895) Dictyostelium discoideum cDNA clone:ddv20c23, 5' ... 48 0.56 1
(BJ412255) Dictyostelium discoideum cDNA clone:ddv7e17, 5' e... 48 0.56 1
(BJ412087) Dictyostelium discoideum cDNA clone:ddv6m23, 5' e... 48 0.56 1
(FK034213) XMC_Ea0012E08r XMC_Ea Xiphophorus maculatus x Xip... 48 0.56 1
(AC134792) Mus musculus chromosome 3, clone RP24-458L6, comp... 36 0.57 5
(AC168679) Strongylocentrotus purpuratus clone R3-3014P23, W... 44 0.67 4
(AC102385) Mus musculus chromosome 1, clone RP24-338N17, com... 42 0.83 2
(AC128468) Rattus norvegicus clone CH230-55B6, *** SEQUENCIN... 42 1.4 2
(AC151282) Mus musculus BAC clone RP23-461H1 from chromosome... 42 1.4 3
(EJ180422) 1092344119418 Global-Ocean-Sampling_GS-27-01-01-1... 36 1.5 2
(DB663769) Saccharomyces cerevisiae mRNA, clone: Y088_A01_F.... 34 1.7 3
(AL808147) Mouse DNA sequence from clone RP23-80N9 on chromo... 44 2.1 3
(BX629345) Zebrafish DNA sequence from clone DKEY-148A13 in ... 46 2.2 1
(AC170734) Sorex araneus clone SA_Ba-257D3, complete sequence. 46 2.2 1
(AC091730) Homo sapiens BAC clone RP11-84F15 from 7, complet... 46 2.2 1
(CU928576) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.2 1
(CU856480) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.2 1
(AC202586) Medicago truncatula clone mth2-33i12, WORKING DRA... 46 2.2 1
(ER556125) 1093016324215 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.2 1
(ER444013) 1092963823791 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.2 1
(EJ258736) 1095349027039 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.2 1
(ED030454) SBA028_N18.r Sugar beet BAC library USH20 (Code S... 46 2.2 1
(AL344744) Tetraodon nigroviridis genome survey sequence SP6... 46 2.2 1
(DH323366) Oryzias latipes Fosmid clone:GOLWFno684_h20, forw... 46 2.2 1
(DW016324) EST1225285 MTY Medicago truncatula cDNA clone MTY... 46 2.2 1
(DC875095) Samia cynthia ricini cDNA, clone: S06A01NCLL0010_... 46 2.2 1
(CV838737) ID0ACC8DC10RM1 ID0ACC Acyrthosiphon pisum cDNA cl... 46 2.2 1
(CV836740) ID0ACC3AG03RM1 ID0ACC Acyrthosiphon pisum cDNA cl... 46 2.2 1
(CV834781) ID0ACC26CE05RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1
(CV834740) ID0ACC26CA10RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1
(CV833705) ID0ACC23CD04RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1
(CV833479) ID0ACC22DH05RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1
(CV833239) ID0ACC22BC08RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1
(CV830343) ID0ACC15BA10RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1
(CV568476) kd17f01.y3 Xiphinema index CSEQDL01 Xiphinema ind... 46 2.2 1
(CV095339) FAMU_USDA_FP_3362 Vitis shuttleworthii L., grape ... 46 2.2 1
(CR537725) Pongo abelii mRNA; EST DKFZp459B1511_r1 (from clo... 46 2.2 1
(CI999508) Drosophila ananassae cDNA, clone: SAM02.CL.0.cl.0... 46 2.2 1
(EY092001) CAZI2051.fwd CAZI Artemisia annua normalized leaf... 46 2.2 1
(EY075929) CAZI12042.rev CAZI Artemisia annua normalized lea... 46 2.2 1
(EY045120) CAIY760.fwd CAIY Artemisia annua leaf Artemisia a... 46 2.2 1
(EY045119) CAIY760.rev CAIY Artemisia annua leaf Artemisia a... 46 2.2 1
(CP001102) Candidatus Amoebophilus asiaticus 5a2, complete g... 46 2.2 1
(CP000687) Actinobacillus pleuropneumoniae serovar 3 str. JL... 46 2.2 1
(CP000058) Pseudomonas syringae pv. phaseolicola 1448A, comp... 46 2.2 1
(DQ331346) Synthetic construct Saccharomyces cerevisiae clon... 34 2.4 3
(DJ130006) Method for identification of useful proteins deri... 34 2.4 3
(AC177731) Strongylocentrotus purpuratus clone R3-1008K3, WO... 40 2.4 3
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 42 2.6 11
(EA265187) Sequence 201 from patent US 7241613. 40 3.0 2
(AC157655) Mus musculus BAC clone RP23-462E18 from chromosom... 36 3.9 6
(AL663108) Mouse DNA sequence from clone RP23-19H23 on chrom... 40 4.0 5
(AC117358) Rattus norvegicus clone CH230-307G20, WORKING DRA... 40 4.0 6
(AC126649) Rattus norvegicus clone CH230-134G15, WORKING DRA... 40 4.1 5
(AL731871) Mouse DNA sequence from clone RP23-111J19 on chro... 36 4.3 8
(AC202221) Acyrthosiphon pisum BAC VMRC38-20-A1 (Benaroya R... 32 4.4 2
(AC211590) Pongo abelii BAC clone CH276-490M9 from chromosom... 42 4.5 2
(BX548157) Zebrafish DNA sequence from clone CH211-201B11 in... 42 4.6 2
(AY878726) Plasmodium falciparum isolate D6 plasmepsin 2 gen... 38 4.7 3
(AY878729) Plasmodium falciparum isolate W2 plasmepsin 2 gen... 38 4.7 3
(AY878728) Plasmodium falciparum isolate MUZ12 plasmepsin 2 ... 38 4.7 3
(AY878727) Plasmodium falciparum isolate HB3 plasmepsin 2 ge... 38 4.7 3
(AY878725) Plasmodium falciparum isolate 7G8 plasmepsin 2 ge... 38 4.7 3
(AM676293) Entamoeba terrapinae GSS, clone terra117g03.p1k. 42 4.9 2
(DH552092) Rattus norvegicus DNA, BAC clone: RNB1-060N19, 5'... 40 5.2 2
(AC183221) Bos taurus clone CH240-102C22, WORKING DRAFT SEQU... 44 5.4 2
(CO075046) GR__Ea35I03.r GR__Ea Gossypium raimondii cDNA clo... 34 5.7 2
(CF664757) RTCNT1_11_F11.g1_A029 Root control Pinus taeda cD... 34 5.8 2
(ET538568) fcg3x.226950i13.f C. graminicola genomic sequence... 42 6.0 2
(AC180388) Strongylocentrotus purpuratus clone R3-3114B7, WO... 38 6.0 2
(AC121836) Mus musculus BAC clone RP24-73L11 from 8, complet... 36 6.5 6
(AC127693) Mus musculus BAC clone RP23-135G19 from 17, compl... 42 6.6 3
(CU137661) Medicago truncatula chromosome 5 clone mth4-96g16... 42 6.7 5
(AL169083) Tetraodon nigroviridis genome survey sequence T7 ... 42 6.9 2
(AL272773) Tetraodon nigroviridis genome survey sequence T7 ... 40 7.2 2
(EY743583) CS00-C3-705-098-C06-CT.F Sweet orange fruit, deve... 42 7.4 2
(AL238512) Tetraodon nigroviridis genome survey sequence T7 ... 40 7.4 2
(AC153788) Mus musculus chromosome 1, clone RP24-282H12, com... 36 7.5 6
(AL326884) Tetraodon nigroviridis genome survey sequence T7 ... 42 7.5 2
(AC201229) Strongylocentrotus purpuratus clone R3-15J1, WORK... 38 8.3 4
(AY258766) Xiphophorus maculatus microsatellite Msa327 seque... 44 8.8 1
(AY258655) Xiphophorus maculatus microsatellite Msa029 seque... 44 8.8 1

>(BJ414847) Dictyostelium discoideum cDNA clone:ddv20i13, 5' end,
single read.
Length = 512

Score = 910 bits (459), Expect(2) = 0.0
Identities = 463/465 (99%)
Strand = Plus / Plus


Query: 49 aatttttctattggtagttatataaatttcatcccatatgataattcagattgcactgga 108
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 48 aatttttctattggtagttatataaatttcatcccatatgataattnngattgcactgga 107


Query: 109 gcaatcaacgggggaggttggtctattttggagtatgcttgtttttcaatcgatgtcaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gcaatcaacgggggaggttggtctattttggagtatgcttgtttttcaatcgatgtcaga 167


Query: 169 tacaattaccaatttacaacccatactttaaatggtgaaggatttgttcaatggactcaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tacaattaccaatttacaacccatactttaaatggtgaaggatttgttcaatggactcaa 227


Query: 229 ttcccaagagttgtaggaaaaacacaatgtttttatcaagacttaccaataagtaatgca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ttcccaagagttgtaggaaaaacacaatgtttttatcaagacttaccaataagtaatgca 287


Query: 289 tcaattggatcatgttataagaataaccctctatcaacatttgatatctttcgttcatta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcaattggatcatgttataagaataaccctctatcaacatttgatatctttcgttcatta 347


Query: 349 ccatcaaatcaatattatttaatttcagttacaagtgaaccattttacccaactaatcaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ccatcaaatcaatattatttaatttcagttacaagtgaaccattttacccaactaatcaa 407


Query: 409 gcaggtatgattgttttacaatatatgggtaatggtgaatgttcaaatgataatgtagaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gcaggtatgattgttttacaatatatgggtaatggtgaatgttcaaatgataatgtagaa 467


Query: 469 ataatgcaatattttacaaataacactcaaagtgaagatggtata 513
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ataatgcaatattttacaaataacactcaaagtgaagatggtata 512

Score = 87.7 bits (44), Expect(2) = 0.0
Identities = 47/47 (100%)
Strand = Plus / Plus


Query: 1 attttattcacaatgaaatnattagcattattgttatcgttattaat 47
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttattcacaatgaaatnattagcattattgttatcgttattaat 47

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 913,733,180
Number of extensions: 53200460
Number of successful extensions: 4301894
Number of sequences better than 10.0: 322
Length of query: 878
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 854
Effective length of database: 97,308,875,965
Effective search space: 83101780074110
Effective search space used: 83101780074110
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10314-1 (Contig-U10314-1Q) /CSM_Contig/Contig-U10314-1Q.Seq.d
(878 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115680_23(AC115680|pid:none) Dictyostelium discoideum chromoso... 78 4e-13
AC116984_110(AC116984|pid:none) Dictyostelium discoideum chromos... 77 6e-13
AC117075_69(AC117075|pid:none) Dictyostelium discoideum chromoso... 48 4e-04
AC116977_114(AC116977|pid:none) Dictyostelium discoideum chromos... 42 0.021
AC116984_4(AC116984|pid:none) Dictyostelium discoideum chromosom... 42 0.035
CP000139_4029(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 34 5.6
M33753_1(M33753|pid:none) D.melanogaster crumbs protein mRNA, co... 34 7.3
EU239415_1(EU239415|pid:none) Equine infectious anemia virus str... 34 7.3
(P10040) RecName: Full=Protein crumbs; AltName: Full=95F; Flags:... 34 7.3
AM920436_516(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 34 7.3
BC080070_1(BC080070|pid:none) Xenopus laevis delta/notch-like EG... 34 7.3
AY118509_1(AY118509|pid:none) Drosophila melanogaster LD13435 fu... 34 7.3

>AC115680_23(AC115680|pid:none) Dictyostelium discoideum chromosome
2 map 4915084-5005461 strain AX4, complete sequence.
Length = 222

Score = 77.8 bits (190), Expect = 4e-13
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 3/172 (1%)
Frame = +1

Query: 67 YINFIPYDNSDCTGAINGGGWSILEYACFSIDVRYNYQFTTHTLNGEGFVQWTQFP-RVV 243
Y+NF P+ N C+G G G+SI C + D Y FT + V+W ++ V
Sbjct: 24 YVNFQPFSNGKCSGNSQGIGYSIQLDTCTTYDRNNTYMFT----SSSNQVKWAKYSVENV 79

Query: 244 GKTQCFYQDLPISNASIGSCYKNNPLSTFDIFRSLPSNQY-YLISVTSEPFYPTNQAGMI 420
+ C IG+C KN ++ FD SLP+ QY Y +S++++P +N
Sbjct: 80 IEPVCSGSATTTQTVKIGNCIKNTNIA-FD-ESSLPAVQYFYKVSISNQPLINSNS---Y 134

Query: 421 VLQYMGNGECSNDN-VEIMQYFTNNTQSEDGITGIQMKWYCNDENEPYETQC 573
+ +M N + N+N V +QYF+N T++ + T +YC+ N+PY C
Sbjct: 135 IKSFMYNVDSCNENEVTNIQYFSNATKAIEKSTSRPSSYYCSASNQPYTYYC 186

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,246,682,436
Number of extensions: 25616200
Number of successful extensions: 54578
Number of sequences better than 10.0: 12
Number of HSP's gapped: 54545
Number of HSP's successfully gapped: 12
Length of query: 292
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 165
Effective length of database: 634,022,584
Effective search space: 104613726360
Effective search space used: 104613726360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.95 gvh: 0.80 alm: 0.47 top: 0.27 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
16.0 %: vacuolar
8.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for Contig-U10314-1 is exc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0