Contig-U10314-1 |
Contig ID |
Contig-U10314-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
878 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
3975635 |
End point |
3976516 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U10314 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.19 |
Homology vs DNA |
Query= Contig-U10314-1 (Contig-U10314-1Q) /CSM_Contig/Contig-U10314-1Q.Seq.d (878 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ414847) Dictyostelium discoideum cDNA clone:ddv20i13, 5' ... 910 0.0 2 (BJ433042) Dictyostelium discoideum cDNA clone:ddv20i13, 3' ... 938 0.0 1 (AU073022) Dictyostelium discoideum slug cDNA, clone SSF726. 470 e-128 1 (EK015333) 1092955228261 Global-Ocean-Sampling_GS-31-01-01-1... 36 6e-04 3 (EK374123) 1095469431258 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.13 2 (CP000497) Pichia stipitis CBS 6054 chromosome 3, complete s... 50 0.14 1 (DE985111) Macropus eugenii DNA, BAC clone: MEB1-195F10_F, 5... 50 0.14 1 (FD392718) 1106162222154 Cryptosporidium muris (strain RN66)... 38 0.41 2 (DR168633) RTPHOS1_26_G06.g1_A029 Roots minus phosphorous Pi... 34 0.41 2 (DR168560) RTPHOS1_26_G06.b1_A029 Roots minus phosphorous Pi... 34 0.42 2 (CU151888) Zebrafish DNA sequence from clone CH211-208J14. 48 0.56 1 (BX927334) Zebrafish DNA sequence from clone CH211-112H5 in ... 48 0.56 1 (BX548007) Zebrafish DNA sequence from clone CH211-93A2 in l... 48 0.56 1 (AC147382) Pan troglodytes BAC clone RP43-171M24 from chromo... 48 0.56 1 (EK357118) 1095468632874 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.56 1 (AL228753) Tetraodon nigroviridis genome survey sequence PUC... 48 0.56 1 (DE886288) Macropus eugenii DNA, BAC clone: MEB1-061D11_F, 5... 48 0.56 1 (CC069871) CSU-K33r.30O19.T7 CSU-K33r Aedes aegypti genomic ... 48 0.56 1 (BJ414895) Dictyostelium discoideum cDNA clone:ddv20c23, 5' ... 48 0.56 1 (BJ412255) Dictyostelium discoideum cDNA clone:ddv7e17, 5' e... 48 0.56 1 (BJ412087) Dictyostelium discoideum cDNA clone:ddv6m23, 5' e... 48 0.56 1 (FK034213) XMC_Ea0012E08r XMC_Ea Xiphophorus maculatus x Xip... 48 0.56 1 (AC134792) Mus musculus chromosome 3, clone RP24-458L6, comp... 36 0.57 5 (AC168679) Strongylocentrotus purpuratus clone R3-3014P23, W... 44 0.67 4 (AC102385) Mus musculus chromosome 1, clone RP24-338N17, com... 42 0.83 2 (AC128468) Rattus norvegicus clone CH230-55B6, *** SEQUENCIN... 42 1.4 2 (AC151282) Mus musculus BAC clone RP23-461H1 from chromosome... 42 1.4 3 (EJ180422) 1092344119418 Global-Ocean-Sampling_GS-27-01-01-1... 36 1.5 2 (DB663769) Saccharomyces cerevisiae mRNA, clone: Y088_A01_F.... 34 1.7 3 (AL808147) Mouse DNA sequence from clone RP23-80N9 on chromo... 44 2.1 3 (BX629345) Zebrafish DNA sequence from clone DKEY-148A13 in ... 46 2.2 1 (AC170734) Sorex araneus clone SA_Ba-257D3, complete sequence. 46 2.2 1 (AC091730) Homo sapiens BAC clone RP11-84F15 from 7, complet... 46 2.2 1 (CU928576) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.2 1 (CU856480) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.2 1 (AC202586) Medicago truncatula clone mth2-33i12, WORKING DRA... 46 2.2 1 (ER556125) 1093016324215 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.2 1 (ER444013) 1092963823791 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.2 1 (EJ258736) 1095349027039 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.2 1 (ED030454) SBA028_N18.r Sugar beet BAC library USH20 (Code S... 46 2.2 1 (AL344744) Tetraodon nigroviridis genome survey sequence SP6... 46 2.2 1 (DH323366) Oryzias latipes Fosmid clone:GOLWFno684_h20, forw... 46 2.2 1 (DW016324) EST1225285 MTY Medicago truncatula cDNA clone MTY... 46 2.2 1 (DC875095) Samia cynthia ricini cDNA, clone: S06A01NCLL0010_... 46 2.2 1 (CV838737) ID0ACC8DC10RM1 ID0ACC Acyrthosiphon pisum cDNA cl... 46 2.2 1 (CV836740) ID0ACC3AG03RM1 ID0ACC Acyrthosiphon pisum cDNA cl... 46 2.2 1 (CV834781) ID0ACC26CE05RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1 (CV834740) ID0ACC26CA10RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1 (CV833705) ID0ACC23CD04RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1 (CV833479) ID0ACC22DH05RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1 (CV833239) ID0ACC22BC08RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1 (CV830343) ID0ACC15BA10RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 2.2 1 (CV568476) kd17f01.y3 Xiphinema index CSEQDL01 Xiphinema ind... 46 2.2 1 (CV095339) FAMU_USDA_FP_3362 Vitis shuttleworthii L., grape ... 46 2.2 1 (CR537725) Pongo abelii mRNA; EST DKFZp459B1511_r1 (from clo... 46 2.2 1 (CI999508) Drosophila ananassae cDNA, clone: SAM02.CL.0.cl.0... 46 2.2 1 (EY092001) CAZI2051.fwd CAZI Artemisia annua normalized leaf... 46 2.2 1 (EY075929) CAZI12042.rev CAZI Artemisia annua normalized lea... 46 2.2 1 (EY045120) CAIY760.fwd CAIY Artemisia annua leaf Artemisia a... 46 2.2 1 (EY045119) CAIY760.rev CAIY Artemisia annua leaf Artemisia a... 46 2.2 1 (CP001102) Candidatus Amoebophilus asiaticus 5a2, complete g... 46 2.2 1 (CP000687) Actinobacillus pleuropneumoniae serovar 3 str. JL... 46 2.2 1 (CP000058) Pseudomonas syringae pv. phaseolicola 1448A, comp... 46 2.2 1 (DQ331346) Synthetic construct Saccharomyces cerevisiae clon... 34 2.4 3 (DJ130006) Method for identification of useful proteins deri... 34 2.4 3 (AC177731) Strongylocentrotus purpuratus clone R3-1008K3, WO... 40 2.4 3 (AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 42 2.6 11 (EA265187) Sequence 201 from patent US 7241613. 40 3.0 2 (AC157655) Mus musculus BAC clone RP23-462E18 from chromosom... 36 3.9 6 (AL663108) Mouse DNA sequence from clone RP23-19H23 on chrom... 40 4.0 5 (AC117358) Rattus norvegicus clone CH230-307G20, WORKING DRA... 40 4.0 6 (AC126649) Rattus norvegicus clone CH230-134G15, WORKING DRA... 40 4.1 5 (AL731871) Mouse DNA sequence from clone RP23-111J19 on chro... 36 4.3 8 (AC202221) Acyrthosiphon pisum BAC VMRC38-20-A1 (Benaroya R... 32 4.4 2 (AC211590) Pongo abelii BAC clone CH276-490M9 from chromosom... 42 4.5 2 (BX548157) Zebrafish DNA sequence from clone CH211-201B11 in... 42 4.6 2 (AY878726) Plasmodium falciparum isolate D6 plasmepsin 2 gen... 38 4.7 3 (AY878729) Plasmodium falciparum isolate W2 plasmepsin 2 gen... 38 4.7 3 (AY878728) Plasmodium falciparum isolate MUZ12 plasmepsin 2 ... 38 4.7 3 (AY878727) Plasmodium falciparum isolate HB3 plasmepsin 2 ge... 38 4.7 3 (AY878725) Plasmodium falciparum isolate 7G8 plasmepsin 2 ge... 38 4.7 3 (AM676293) Entamoeba terrapinae GSS, clone terra117g03.p1k. 42 4.9 2 (DH552092) Rattus norvegicus DNA, BAC clone: RNB1-060N19, 5'... 40 5.2 2 (AC183221) Bos taurus clone CH240-102C22, WORKING DRAFT SEQU... 44 5.4 2 (CO075046) GR__Ea35I03.r GR__Ea Gossypium raimondii cDNA clo... 34 5.7 2 (CF664757) RTCNT1_11_F11.g1_A029 Root control Pinus taeda cD... 34 5.8 2 (ET538568) fcg3x.226950i13.f C. graminicola genomic sequence... 42 6.0 2 (AC180388) Strongylocentrotus purpuratus clone R3-3114B7, WO... 38 6.0 2 (AC121836) Mus musculus BAC clone RP24-73L11 from 8, complet... 36 6.5 6 (AC127693) Mus musculus BAC clone RP23-135G19 from 17, compl... 42 6.6 3 (CU137661) Medicago truncatula chromosome 5 clone mth4-96g16... 42 6.7 5 (AL169083) Tetraodon nigroviridis genome survey sequence T7 ... 42 6.9 2 (AL272773) Tetraodon nigroviridis genome survey sequence T7 ... 40 7.2 2 (EY743583) CS00-C3-705-098-C06-CT.F Sweet orange fruit, deve... 42 7.4 2 (AL238512) Tetraodon nigroviridis genome survey sequence T7 ... 40 7.4 2 (AC153788) Mus musculus chromosome 1, clone RP24-282H12, com... 36 7.5 6 (AL326884) Tetraodon nigroviridis genome survey sequence T7 ... 42 7.5 2 (AC201229) Strongylocentrotus purpuratus clone R3-15J1, WORK... 38 8.3 4 (AY258766) Xiphophorus maculatus microsatellite Msa327 seque... 44 8.8 1 (AY258655) Xiphophorus maculatus microsatellite Msa029 seque... 44 8.8 1
>(BJ414847) Dictyostelium discoideum cDNA clone:ddv20i13, 5' end, single read. Length = 512
Score = 910 bits (459), Expect(2) = 0.0 Identities = 463/465 (99%) Strand = Plus / Plus
Query: 49 aatttttctattggtagttatataaatttcatcccatatgataattcagattgcactgga 108 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 48 aatttttctattggtagttatataaatttcatcccatatgataattnngattgcactgga 107
Query: 109 gcaatcaacgggggaggttggtctattttggagtatgcttgtttttcaatcgatgtcaga 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108 gcaatcaacgggggaggttggtctattttggagtatgcttgtttttcaatcgatgtcaga 167
Query: 169 tacaattaccaatttacaacccatactttaaatggtgaaggatttgttcaatggactcaa 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 tacaattaccaatttacaacccatactttaaatggtgaaggatttgttcaatggactcaa 227
Query: 229 ttcccaagagttgtaggaaaaacacaatgtttttatcaagacttaccaataagtaatgca 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 ttcccaagagttgtaggaaaaacacaatgtttttatcaagacttaccaataagtaatgca 287
Query: 289 tcaattggatcatgttataagaataaccctctatcaacatttgatatctttcgttcatta 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 288 tcaattggatcatgttataagaataaccctctatcaacatttgatatctttcgttcatta 347
Query: 349 ccatcaaatcaatattatttaatttcagttacaagtgaaccattttacccaactaatcaa 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 348 ccatcaaatcaatattatttaatttcagttacaagtgaaccattttacccaactaatcaa 407
Query: 409 gcaggtatgattgttttacaatatatgggtaatggtgaatgttcaaatgataatgtagaa 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 408 gcaggtatgattgttttacaatatatgggtaatggtgaatgttcaaatgataatgtagaa 467
Query: 469 ataatgcaatattttacaaataacactcaaagtgaagatggtata 513 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 468 ataatgcaatattttacaaataacactcaaagtgaagatggtata 512
Score = 87.7 bits (44), Expect(2) = 0.0 Identities = 47/47 (100%) Strand = Plus / Plus
Query: 1 attttattcacaatgaaatnattagcattattgttatcgttattaat 47 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attttattcacaatgaaatnattagcattattgttatcgttattaat 47
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 913,733,180 Number of extensions: 53200460 Number of successful extensions: 4301894 Number of sequences better than 10.0: 322 Length of query: 878 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 854 Effective length of database: 97,308,875,965 Effective search space: 83101780074110 Effective search space used: 83101780074110 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.27 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |