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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U10291-1
Contig ID Contig-U10291-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10291-1 (Contig-U10291-1Q) /CSM_Contig/Contig-U10291-1Q.Seq.d
GTAAAGGTTTTATGTGTATATTTTTTAATGACCTTTTCGAATTAGTTTCA
TCATTATTTGTTGTTTTATTTTTCACATTTTTAGTATGTTTTGTAGATTA
TAGTAAATTATTTTCAGAGCAGATGCCTCCACCAGCATTAAGAGAGTCTG
TCAATTTTTCAGCACCAATACCAATTTGGTTAATGGTATTTTTAGTGATA
TTTTCATTATATTGGTTAAGTAAATTATTTTCATTCTTTTCTAGTATTAA
AACCAATTGGGAAATTAGTAGTTTTTATAAAAACACTTTAAAGATTAATG
AAGATGATATTCAAACAATAGAATGGAGAGAAGTTGTTTCAAAGATCGTT
TTAGTACCAAGACTATGCATTGTCAAGGAGAATATGAACGCTTTAGATAT
TGCAAATAGAATTATGAGAAAAGAAAACTATATAATTGGTTTAATCAATC
AAAGAATTTTAAATTTATCAATACCTTTCCCATTCCTTAGAAATTTAACT
TTTATAACTAAAACTTTAGAATGGAGTTTAATGTATTCTTTATTTAATTA
TATTTTTGATGAAAATGGTATTATTAAAAGTGAATTTCAAGATCCAACTC
AAAGAAAAAGATTATCAAGAGGATTATCACGTAGATTTATGACAATTGGT
ATATTAGGTTTATTTACAACACCATTTATATTCTTTTTCTTATTAATAAA
CTTTTTCTTTGAATATGCTGAAGAATTAAAGAATAGACCAGGTTCATTAT
TTAGTAGAGAATGGTCACCTTTGGCACGTTGGGAATTTAGAGAATTAAAT
GAGTTACCTCATTATTTTCAAAATAGATTAAATCTTAGTTACTCTCATGC
TAATCAATATGTTGAGAGTTTTCCATCACAAATGTTATCAACAATTGCAA
AATTCATTAGTTTCTTATTTGGTTCAGTTTTG
Gap no gap
Contig length 932
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3203354
End point 3204286
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U10291
List of clone(s) 

est1=VFL368Z,1,511
est2=SSC703F,234,933
Translated Amino Acid sequence 
KGFMCIFFNDLFELVSSLFVVLFFTFLVCFVDYSKLFSEQMPPPALRESVNFSAPIPIWL
MVFLVIFSLYWLSKLFSFFSSIKTNWEISSFYKNTLKINEDDIQTIEWREVVSKIVLVPR
LCIVKENMNALDIANRIMRKENYIIGLINQRILNLSIPFPFLRNLTFITKTLEWSLMYSL
FNYIFDENGIIKSEFQDPTQRKRLSRGLSRRFMTIGILGLFTTPFIFFFLLINFFFEYAE
ELKNRPGSLFSREWSPLARWEFRELNELPHYFQNRLNLSYSHANQYVESFPSQMLSTIAK
FISFLFGSVL
Translated Amino Acid sequence (All Frames) 
Frame A:
vkvlcvyflmtfsn*fhhyllfyfshf*yvl*iivnyfqsrclhqh*eslsifqhqyqfg
*wyf**yfhyig*vnyfhsflvlkpigklvvfiktl*rlmkmifkq*ngeklfqrsf*yq
dyalsrri*tl*ilqiel*ekkti*lv*sikef*iyqylshslei*ll*lkl*ngv*cil
yliiflmkmvllkvnfkiqlkekdyqedyhvdl*qlvy*vylqhhlysfsy**tfslnml
kn*ridqvhylvenghlwhvgnlen*msyliifkid*ilvtlmlinmlrvfhhkcyqqlq
nslvsylvqf


Frame B:
*rfyvyif**pfrisfiiiccfifhifsmfcrl**iifradastsikrvcqffstntnlv
ngifsdifiilvk*iifilf*y*nqlgn**fl*khfkd**r*ysnnrmerscfkdrfstk
tmhcqgeyerfryck*nyekrklynwfnqsknfkfintfpip*kfnfyn*nfrmefnvff
i*lyf**kwyy*k*isrsnskkkiikriit*iydnwyirfiyntiyilflinklfl*ic*
rike*trfii**rmvtfgtlgi*rik*vtslfsk*iks*llsc*sic*efsitnvinnck
ih*fliwfsf


Frame C:
KGFMCIFFNDLFELVSSLFVVLFFTFLVCFVDYSKLFSEQMPPPALRESVNFSAPIPIWL
MVFLVIFSLYWLSKLFSFFSSIKTNWEISSFYKNTLKINEDDIQTIEWREVVSKIVLVPR
LCIVKENMNALDIANRIMRKENYIIGLINQRILNLSIPFPFLRNLTFITKTLEWSLMYSL
FNYIFDENGIIKSEFQDPTQRKRLSRGLSRRFMTIGILGLFTTPFIFFFLLINFFFEYAE
ELKNRPGSLFSREWSPLARWEFRELNELPHYFQNRLNLSYSHANQYVESFPSQMLSTIAK
FISFLFGSVL
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10291-1 (Contig-U10291-1Q)
/CSM_Contig/Contig-U10291-1Q.Seq.d
         (932 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10291-1 (Contig-U10291-1Q) /CSM_Contig/Conti...  1661  0.0
Contig-U10847-1 (Contig-U10847-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12865-1 (Contig-U12865-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U12835-1 (Contig-U12835-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U12229-1 (Contig-U12229-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U11936-1 (Contig-U11936-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U11926-1 (Contig-U11926-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U11779-1 (Contig-U11779-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U10238-1 (Contig-U10238-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U09232-1 (Contig-U09232-1Q) /CSM_Contig/Conti...    36  0.066

>Contig-U10291-1 (Contig-U10291-1Q) /CSM_Contig/Contig-U10291-1Q.Seq.d
          Length = 932

 Score = 1661 bits (838), Expect = 0.0
 Identities = 838/838 (100%)
 Strand = Plus / Plus

                                                                       
Query: 95  agattatagtaaattattttcagagcagatgcctccaccagcattaagagagtctgtcaa 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  agattatagtaaattattttcagagcagatgcctccaccagcattaagagagtctgtcaa 154

                                                                       
Query: 155 tttttcagcaccaataccaatttggttaatggtatttttagtgatattttcattatattg 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tttttcagcaccaataccaatttggttaatggtatttttagtgatattttcattatattg 214

                                                                       
Query: 215 gttaagtaaattattttcattcttttctagtattaaaaccaattgggaaattagtagttt 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gttaagtaaattattttcattcttttctagtattaaaaccaattgggaaattagtagttt 274

                                                                       
Query: 275 ttataaaaacactttaaagattaatgaagatgatattcaaacaatagaatggagagaagt 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttataaaaacactttaaagattaatgaagatgatattcaaacaatagaatggagagaagt 334

                                                                       
Query: 335 tgtttcaaagatcgttttagtaccaagactatgcattgtcaaggagaatatgaacgcttt 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttcaaagatcgttttagtaccaagactatgcattgtcaaggagaatatgaacgcttt 394

                                                                       
Query: 395 agatattgcaaatagaattatgagaaaagaaaactatataattggtttaatcaatcaaag 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agatattgcaaatagaattatgagaaaagaaaactatataattggtttaatcaatcaaag 454

                                                                       
Query: 455 aattttaaatttatcaatacctttcccattccttagaaatttaacttttataactaaaac 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aattttaaatttatcaatacctttcccattccttagaaatttaacttttataactaaaac 514

                                                                       
Query: 515 tttagaatggagtttaatgtattctttatttaattatatttttgatgaaaatggtattat 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttagaatggagtttaatgtattctttatttaattatatttttgatgaaaatggtattat 574

                                                                       
Query: 575 taaaagtgaatttcaagatccaactcaaagaaaaagattatcaagaggattatcacgtag 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 taaaagtgaatttcaagatccaactcaaagaaaaagattatcaagaggattatcacgtag 634

                                                                       
Query: 635 atttatgacaattggtatattaggtttatttacaacaccatttatattctttttcttatt 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atttatgacaattggtatattaggtttatttacaacaccatttatattctttttcttatt 694

                                                                       
Query: 695 aataaactttttctttgaatatgctgaagaattaaagaatagaccaggttcattatttag 754
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aataaactttttctttgaatatgctgaagaattaaagaatagaccaggttcattatttag 754

                                                                       
Query: 755 tagagaatggtcacctttggcacgttgggaatttagagaattaaatgagttacctcatta 814
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tagagaatggtcacctttggcacgttgggaatttagagaattaaatgagttacctcatta 814

                                                                       
Query: 815 ttttcaaaatagattaaatcttagttactctcatgctaatcaatatgttgagagttttcc 874
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttttcaaaatagattaaatcttagttactctcatgctaatcaatatgttgagagttttcc 874

                                                                     
Query: 875 atcacaaatgttatcaacaattgcaaaattcattagtttcttatttggttcagttttg 932
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 atcacaaatgttatcaacaattgcaaaattcattagtttcttatttggttcagttttg 932


 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  gtaaaggttttatgtgtatattttttaatgac 32
          ||||||||||||||||||||||||||||||||
Sbjct: 1  gtaaaggttttatgtgtatattttttaatgac 32


>Contig-U10847-1 (Contig-U10847-1Q) /CSM_Contig/Contig-U10847-1Q.Seq.d
          Length = 1614

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 710  tgaatatgctgaagaattaaagaa 733
            ||||||| ||||||||||||||||
Sbjct: 1047 tgaatatcctgaagaattaaagaa 1070


 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 589  aagatccaactcaaa 603
            |||||||||||||||
Sbjct: 1523 aagatccaactcaaa 1537


>Contig-U12865-1 (Contig-U12865-1Q) /CSM_Contig/Contig-U12865-1Q.Seq.d
          Length = 1092

 Score = 36.2 bits (18), Expect = 0.066
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 540 ttatttaattatattttt 557
           ||||||||||||||||||
Sbjct: 148 ttatttaattatattttt 131


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,069
Number of Sequences: 6905
Number of extensions: 19069
Number of successful extensions: 2009
Number of sequences better than 10.0: 221
length of query: 932
length of database: 5,674,871
effective HSP length: 16
effective length of query: 916
effective length of database: 5,564,391
effective search space: 5096982156
effective search space used: 5096982156
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA 
Query= Contig-U10291-1 (Contig-U10291-1Q) /CSM_Contig/Contig-U10291-1Q.Seq.d
         (932 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY191016) Dictyostelium discoideum autophagy protein 9 (apg...  1007   0.0    2
(BJ434003) Dictyostelium discoideum cDNA clone:ddv23h17, 3' ...   595   e-180  2
(AU071893) Dictyostelium discoideum slug cDNA, clone SSC703.      476   e-130  1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   6e-04  19
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.002  13
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.003  21
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   0.005  18
(CU633579) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.016  7
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    38   0.022  18
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   0.027  8
(CT573235) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.037  7
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    32   0.043  16
(CU468009) H.melpomene DNA sequence from clone AEHM-27N4.          40   0.048  6
(ER458122) 1092963876829 Global-Ocean-Sampling_GS-35-01-01-1...    38   0.12   2
(EK350469) 1095467914601 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.12   2
(BX126047) Danio rerio genomic clone DKEY-77B13, genomic sur...    38   0.12   2
(EK223435) 1095460149139 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.12   2
(ER348423) 1092345417525 Global-Ocean-Sampling_GS-34-01-01-1...    38   0.12   2
(EK258925) 1095462067647 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.12   2
(BX137223) Danio rerio genomic clone DKEY-91J1, genomic surv...    38   0.13   2
(FK916768) EST_lsal_evj_946641 lsalevj mixed_tissue_mixed_st...    50   0.15   1
(FK916767) EST_lsal_evj_941265 lsalevj mixed_tissue_mixed_st...    50   0.15   1
(FK913485) EST_lsal_evj_934572 lsalevj mixed_tissue_mixed_st...    50   0.15   1
(FK902332) EST_lsal_evj_854440 lsalevj mixed_tissue_mixed_st...    50   0.15   1
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    32   0.16   19
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.16   16
(AP009905) Lotus japonicus genomic DNA, clone: LjT09C09, TM2...    38   0.17   7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   0.19   9
(AM635565) Entamoeba dispar GSS, clone dispar15e05.q1k.            36   0.23   4
(AC209510) Solanum lycopersicum chromosome 6 clone C06HBa010...    40   0.24   8
(CU179635) M.truncatula DNA sequence from clone MTH2-20H1 on...    32   0.31   8
(AC093929) Rattus norvegicus clone CH230-4B1, WORKING DRAFT ...    38   0.33   2
(AC146992) Lytechinus variegatus clone BLV-131N16, WORKING D...    38   0.36   4
(AE017263) Mesoplasma florum L1 complete genome.                   32   0.38   16
(AC230468) Bos taurus clone CH240-508G1, WORKING DRAFT SEQUE...    40   0.41   5
(AE017245) Mycoplasma synoviae 53, complete genome.                36   0.41   16
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    34   0.46   10
(CZ538072) SRAA-aad17d05.g1 Strongyloides ratti whole genome...    44   0.51   2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    32   0.52   10
(AC202545) Trichinella spiralis BAC clone TS195-8H12 from ch...    40   0.53   7
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.59   11
(BV226961) S233P6143RD9.T0 LabradorRetriever Canis familiari...    48   0.60   1
(CR382134) Debaryomyces hansenii chromosome B of strain CBS7...    48   0.60   1
(Z78416) Caenorhabditis elegans Cosmid C23H4.                      48   0.60   1
(AC110084) Homo sapiens BAC clone RP11-568P19 from 2, comple...    48   0.60   1
(BH158399) ENTTN31TR Entamoeba histolytica Sheared DNA Entam...    48   0.60   1
(EK369238) 1095469409949 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.60   1
(EK348451) 1095467610431 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.60   1
(AU212587) Caenorhabditis elegans cDNA clone:yk787b12 : 3' e...    48   0.60   1
(BJ816175) Caenorhabditis elegans cDNA clone:yk1563c09 : 3' ...    48   0.60   1
(BJ780937) Caenorhabditis elegans cDNA clone:yk1493d01 : 3' ...    48   0.60   1
(BJ779877) Caenorhabditis elegans cDNA clone:yk1417a02 : 3' ...    48   0.60   1
(BJ775705) Caenorhabditis elegans cDNA clone:yk1368c01 : 3' ...    48   0.60   1
(BI494386) df109g02.w1 Morton Fetal Cochlea Homo sapiens cDN...    48   0.60   1
(T48139) yb25c05.r1 Stratagene fetal spleen (#937205) Homo s...    48   0.60   1
(AC112811) Rattus norvegicus clone CH230-175H15, WORKING DRA...    42   0.64   6
(BD061520) Genome DNA of symbiotic bacteria of aphid.              34   0.68   17
(AR409405) Sequence 1 from patent US 6632935.                      34   0.68   17
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    34   0.68   17
(AC145960) Gallus gallus BAC clone CH261-18H1 from chromosom...    34   0.70   7
(AC092695) Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cance...    40   0.72   4
(CU407012) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.73   7
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    32   0.75   9
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.90   17
(AC156053) Bos taurus clone CH240-44N24, WORKING DRAFT SEQUE...    40   0.93   4
(AC087527) Homo sapiens chromosome 15 clone RP11-451I17 map ...    38   0.98   6
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    34   1.2    7
(CU326372) S.lycopersicum DNA sequence from clone SL_MboI-30...    40   1.2    9
(AC013613) Homo sapiens clone RP11-10M11, WORKING DRAFT SEQU...    36   1.2    2
(AL357074) Human DNA sequence *** SEQUENCING CANCELLED *** f...    36   1.2    2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    34   1.2    2
(AC079954) Homo sapiens 12 BAC RP11-179A1 (Roswell Park Canc...    46   1.3    3
(AL021451) Human DNA sequence from clone RP1-188H10 on chrom...    36   1.3    2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   1.5    10
(AC087432) Homo sapiens chromosome 3 clone RP11-96G4 map 3p,...    34   1.6    9
(AC205434) Equus caballus clone CH241-191P19, WORKING DRAFT ...    32   1.6    9
(EK045449) 1092959547706 Global-Ocean-Sampling_GS-31-01-01-1...    32   1.6    2
(ER381333) 1094338751495 Global-Ocean-Sampling_GS-34-01-01-1...    32   1.6    2
(EK006740) 1092955107531 Global-Ocean-Sampling_GS-31-01-01-1...    32   1.6    2
(EJ908143) 1093018523857 Global-Ocean-Sampling_GS-30-02-01-1...    32   1.6    2
(AC119909) Mus musculus chromosome 8, clone RP24-241I4, comp...    38   1.7    5
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   1.8    9
(AM454217) Vitis vinifera contig VV78X112471.5, whole genome...    32   1.9    5
(AC152196) Bos taurus clone CH240-4C15, WORKING DRAFT SEQUEN...    36   2.0    8
(AE017308) Mycoplasma mobile 163K complete genome.                 32   2.0    16
(EK447756) 1095467054901 Global-Ocean-Sampling_GS-32-01-01-1...    44   2.1    2
(DQ366720) Uncultured Prochlorococcus marinus clone HF10-110...    34   2.1    6
(CR550305) Zebrafish DNA sequence from clone DKEY-205E15 in ...    42   2.1    4
(EJ151140) 1092343762564 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.2    2
(AX926717) Sequence 7 from Patent WO03084989.                      34   2.3    6
(AC153007) Mus musculus BAC clone RP24-266E2 from chromosome...    46   2.4    1
(AC124485) Mus musculus BAC clone RP23-450J12 from chromosom...    46   2.4    1
(AL132982) Human DNA sequence from clone KB-152G3 on chromos...    46   2.4    1
(AC161584) Mus musculus chromosome 8 clone RP24-499H2, *** S...    46   2.4    1
(AC152519) Bos taurus clone CH240-11D15, WORKING DRAFT SEQUE...    46   2.4    1
(DQ280158) Muntiacus muntjak vaginalis chromosome 1 clone 09...    46   2.4    1
(AC189533) Brassica rapa subsp. pekinensis clone KBrH001D23,...    46   2.4    1
(AC180850) Strongylocentrotus purpuratus clone R3-3067P21, W...    46   2.4    1
(AC166355) Mus musculus chromosome 8 clone RP24-303D2, *** S...    46   2.4    1
(AC025058) Homo sapiens chromosome 9 clone RP11-315N20 map 9...    46   2.4    1

>(AY191016) Dictyostelium discoideum autophagy protein 9 (apg9)
           gene, partial cds.
          Length = 2203

 Score = 1007 bits (508), Expect(2) = 0.0
 Identities = 508/508 (100%)
 Strand = Plus / Plus


Query: 115 cagagcagatgcctccaccagcattaagagagtctgtcaatttttcagcaccaataccaa 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagcagatgcctccaccagcattaagagagtctgtcaatttttcagcaccaataccaa 500


Query: 175 tttggttaatggtatttttagtgatattttcattatattggttaagtaaattattttcat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttggttaatggtatttttagtgatattttcattatattggttaagtaaattattttcat 560


Query: 235 tcttttctagtattaaaaccaattgggaaattagtagtttttataaaaacactttaaaga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttttctagtattaaaaccaattgggaaattagtagtttttataaaaacactttaaaga 620


Query: 295 ttaatgaagatgatattcaaacaatagaatggagagaagttgtttcaaagatcgttttag 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatgaagatgatattcaaacaatagaatggagagaagttgtttcaaagatcgttttag 680


Query: 355 taccaagactatgcattgtcaaggagaatatgaacgctttagatattgcaaatagaatta 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taccaagactatgcattgtcaaggagaatatgaacgctttagatattgcaaatagaatta 740


Query: 415 tgagaaaagaaaactatataattggtttaatcaatcaaagaattttaaatttatcaatac 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagaaaagaaaactatataattggtttaatcaatcaaagaattttaaatttatcaatac 800


Query: 475 ctttcccattccttagaaatttaacttttataactaaaactttagaatggagtttaatgt 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctttcccattccttagaaatttaacttttataactaaaactttagaatggagtttaatgt 860


Query: 535 attctttatttaattatatttttgatgaaaatggtattattaaaagtgaatttcaagatc 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 attctttatttaattatatttttgatgaaaatggtattattaaaagtgaatttcaagatc 920


Query: 595 caactcaaagaaaaagattatcaagagg 622
           ||||||||||||||||||||||||||||
Sbjct: 921 caactcaaagaaaaagattatcaagagg 948

 Score =  617 bits (311), Expect(2) = 0.0
 Identities = 311/311 (100%)
 Strand = Plus / Plus


Query: 622  gattatcacgtagatttatgacaattggtatattaggtttatttacaacaccatttatat 681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 gattatcacgtagatttatgacaattggtatattaggtttatttacaacaccatttatat 1082


Query: 682  tctttttcttattaataaactttttctttgaatatgctgaagaattaaagaatagaccag 741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 tctttttcttattaataaactttttctttgaatatgctgaagaattaaagaatagaccag 1142


Query: 742  gttcattatttagtagagaatggtcacctttggcacgttgggaatttagagaattaaatg 801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 gttcattatttagtagagaatggtcacctttggcacgttgggaatttagagaattaaatg 1202


Query: 802  agttacctcattattttcaaaatagattaaatcttagttactctcatgctaatcaatatg 861
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 agttacctcattattttcaaaatagattaaatcttagttactctcatgctaatcaatatg 1262


Query: 862  ttgagagttttccatcacaaatgttatcaacaattgcaaaattcattagtttcttatttg 921
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 ttgagagttttccatcacaaatgttatcaacaattgcaaaattcattagtttcttatttg 1322


Query: 922  gttcagttttg 932
            |||||||||||
Sbjct: 1323 gttcagttttg 1333

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,214,509,212
Number of extensions: 85424252
Number of successful extensions: 7198462
Number of sequences better than 10.0: 303
Length of query: 932
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 908
Effective length of database: 97,308,875,965
Effective search space: 88356459376220
Effective search space used: 88356459376220
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.27
Homology vs Protein 
Query= Contig-U10291-1 (Contig-U10291-1Q) /CSM_Contig/Contig-U10291-1Q.Seq.d
         (932 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q4WLT9) RecName: Full=Autophagy-related protein 9;                   177   6e-43
(A7KAM0) RecName: Full=Autophagy-related protein 9;  &AM920437_4...   175   2e-42
(Q12142) RecName: Full=Autophagy-related protein 9; AltName: Ful...   172   1e-41
(Q875A7) RecName: Full=Autophagy-related protein 9;  &BX088700_2...   171   4e-41
(Q6CT08) RecName: Full=Autophagy-related protein 9;  &CR382123_7...   166   8e-40
(O74312) RecName: Full=Autophagy-related protein 9;  &AL031349_7...   166   8e-40
CU928178_478(CU928178|pid:none) Zygosaccharomyces rouxii strain ...   162   1e-38
(A7TR50) RecName: Full=Autophagy-related protein 9;                   159   1e-37
CP001326_271(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   157   5e-37
(Q6C2F5) RecName: Full=Autophagy-related protein 9;  &CR382132_3...   155   2e-36
(A7ERK1) RecName: Full=Autophagy-related protein 9;                   155   2e-36
FN392322_533(FN392322|pid:none) Pichia pastoris GS115 chromosome...   153   9e-36
AM085508_1(AM085508|pid:none) Glycine max partial mRNA for autop...   149   1e-34
AP008209_911(AP008209|pid:none) Oryza sativa (japonica cultivar-...   145   1e-33
(Q4P683) RecName: Full=Autophagy-related protein 9;                   145   2e-33
(Q6TGJ4) RecName: Full=Autophagy-related protein 9;  &AY421966_5...   144   3e-33
(Q0UYL2) RecName: Full=Autophagy-related protein 9;                   143   7e-33
CR954205_281(CR954205|pid:none) Ostreococcus tauri strain OTTH05...   140   5e-32
AC006593_10(AC006593|pid:none) Arabidopsis thaliana chromosome 2...   140   8e-32
(Q5ANC9) RecName: Full=Autophagy-related protein 9;                   138   2e-31
AM085516_1(AM085516|pid:none) Zea mays mRNA for autophagy protei...   138   3e-31
AM085514_1(AM085514|pid:none) Triticum aestivum mRNA for autopha...   137   5e-31
AM085509_1(AM085509|pid:none) Hordeum vulgare mRNA for autophagy...   136   9e-31
CP000502_34(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso...   136   9e-31
BC133145_1(BC133145|pid:none) Danio rerio cDNA clone MGC:158700 ...   132   1e-29
AM085507_1(AM085507|pid:none) Gallus gallus mRNA for autophagy p...   130   6e-29
AM085510_1(AM085510|pid:none) Mus musculus mRNA for autophagy pr...   129   1e-28
(Q5FWU3) RecName: Full=Autophagy-related protein 9A; AltName: Fu...   129   1e-28
(Q68FE2) RecName: Full=Autophagy-related protein 9A; AltName: Fu...   129   1e-28
(Q9HAG7) RecName: Full=Autophagy-related protein 9A; AltName: Fu...   129   2e-28
BX538198_1(BX538198|pid:none) Homo sapiens mRNA; cDNA DKFZp686O2...   129   2e-28
BX538192_1(BX538192|pid:none) Homo sapiens mRNA; cDNA DKFZp686J0...   129   2e-28
AM393801_1(AM393801|pid:none) Synthetic construct Homo sapiens c...   129   2e-28
AK056595_1(AK056595|pid:none) Homo sapiens cDNA FLJ32033 fis, cl...   129   2e-28
(Q5KHR3) RecName: Full=Autophagy-related protein 9;  &AE017344_5...   115   2e-24
AM085503_1(AM085503|pid:none) Drosophila pseudoobscura mRNA for ...   114   4e-24
AE013599_2371(AE013599|pid:none) Drosophila melanogaster chromos...   112   1e-23
DQ138829_1(DQ138829|pid:none) Drosophila erecta voucher stock #1...   112   2e-23
DQ138825_1(DQ138825|pid:none) Drosophila simulans strain Ky-a CG...   112   2e-23
DQ138826_1(DQ138826|pid:none) Drosophila simulans strain Ky-b CG...   112   2e-23
AL833865_1(AL833865|pid:none) Homo sapiens mRNA; cDNA DKFZp434P0...   109   1e-22
FN357422_29(FN357422|pid:none) Schistosoma mansoni genome sequen...   101   4e-20
AM085504_1(AM085504|pid:none) Drosophila sechellia mRNA for auto...    92   2e-17
BC156363_1(BC156363|pid:none) Synthetic construct Mus musculus c...    91   6e-17
AM085500_1(AM085500|pid:none) Caenorhabditis elegans mRNA for au...    79   3e-13
AY809856_1(AY809856|pid:none) Schistosoma japonicum SJCHGC04419 ...    62   4e-08
EU706898_1(EU706898|pid:none) Drosophila melanogaster isolate ZS...    60   8e-08
EU313704_1(EU313704|pid:none) Drosophila simulans strain 01FG At...    60   8e-08
DQ381245_1(DQ381245|pid:none) Ictalurus punctatus clone SNNH06 a...    38   0.56
FN392321_167(FN392321|pid:none) Pichia pastoris GS115 chromosome...    37   0.73
BC034139_1(BC034139|pid:none) Mus musculus autophagy-related 9A ...    36   2.1
AB090308_1(AB090308|pid:none) Bombyx mori Bmtitin1, Bmtitin2, Bm...    34   6.2
AB079866_1(AB079866|pid:none) Bombyx mori Bmtitin1 gene for Titi...    34   6.2
AM398681_2378(AM398681|pid:none) Flavobacterium psychrophilum JI...    34   8.1

>(Q4WLT9) RecName: Full=Autophagy-related protein 9;
          Length = 951

 Score =  177 bits (448), Expect = 6e-43
 Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 17/236 (7%)
 Frame = +3

Query: 273  FYKNTLKINEDDIQTIEWREVVSKIVLV----PRLCIV-------------KENMNALDI 401
            FY   L +++ DIQTI W+E+VS+++ +    P                  K+ M+A DI
Sbjct: 319  FYYYLLGVSDTDIQTISWQEIVSRLMTLRDANPATAGAVSARHRKFMGSQSKQRMDAHDI 378

Query: 402  ANRIMRKENYIIGLINQRILNLSIPFPFLRNLTFITKTLEWSLMYSLFNYIFDENGIIKS 581
            ANR+MRKENY+I LIN+ IL+L++P PFLRN    ++TLEW++   + +Y+F+E G +++
Sbjct: 379  ANRLMRKENYLIALINKDILDLTLPIPFLRNKQLFSRTLEWNINLCIMDYVFNEQGQVRT 438

Query: 582  EFQDPTQRKRLSRGLSRRFMTIGXXXXXXXXXXXXXXXXXXXXEYAEELKNRPGSLFSRE 761
             F   T RK LS GL RRF+  G                     Y  E K  P  + SR+
Sbjct: 439  LFLKDTHRKALSEGLRRRFIFAGIMNIFVAPFIVVYFMMHYFFRYFNEYKKNPSQIGSRQ 498

Query: 762  WSPLARWEFRELNELPHYFQNRLNLSYSHANQYVESFPSQMLSTIAKFISFLFGSV 929
            ++PLA W+FRE NEL H F+ R+N+SY  A++YV+ FP      +A F++F+ G++
Sbjct: 499  YTPLAEWKFREFNELWHLFERRINMSYPFASRYVDQFPKDKTVQVAGFVAFVSGAL 554

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,140,260,903
Number of extensions: 18904208
Number of successful extensions: 50113
Number of sequences better than 10.0: 54
Number of HSP's gapped: 49985
Number of HSP's successfully gapped: 59
Length of query: 310
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 182
Effective length of database: 630,818,299
Effective search space: 114808930418
Effective search space used: 114808930418
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.83  gvh: 0.65  alm: 0.17  top: 0.47  tms: 0.27  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 24.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U10291-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0