| Contig-U10265-1 |
| Contig ID |
Contig-U10265-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
625 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
1378534 |
| End point |
1379164 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
3 |
| Number of EST |
3 |
| Link to clone list |
U10265 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.18 |
| Homology vs DNA |
Query= Contig-U10265-1 (Contig-U10265-1Q) /CSM_Contig/Contig-U10265-1Q.Seq.d
(625 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU262927) Dictyostelium discoideum vegetative cDNA clone:VS... 1015 0.0 1
(AY392442) Dictyostelium discoideum dolichyl phosphate gluco... 529 0.0 3
(C25677) Dictyostelium discoideum slug cDNA, clone SSB163. 123 5e-60 3
(BJ435441) Dictyostelium discoideum cDNA clone:ddv27k01, 3' ... 206 7e-49 1
(EV849252) FTSAH81TF Tetrahymena thermophila SB210 cDNA libr... 46 1e-11 3
(EV842636) TT1DW81TV Tetrahymena thermophila SB210 cDNA libr... 46 2e-11 3
(DY678579) TT1AW27TH Tetrahymena thermophila EST library str... 46 2e-11 3
(EV840502) TT1EC48TV Tetrahymena thermophila SB210 cDNA libr... 46 2e-11 3
(EV827582) TT1EL71TV Tetrahymena thermophila SB210 cDNA libr... 46 2e-11 3
(EV842635) TT1DW81TH Tetrahymena thermophila SB210 cDNA libr... 44 2e-08 3
(CN760521) ID0AAA28CF12RM1 ApMS Acyrthosiphon pisum cDNA clo... 48 3e-08 2
(EX618359) 255402892 Pea aphid whole body normalized full le... 48 3e-08 2
(FF300765) 279342670 Pea aphid whole body normalized full le... 48 3e-08 2
(DV739903) ID0AFF14DE03CM1 ID0AFF Acyrthosiphon pisum cDNA c... 48 3e-08 2
(EX621927) 255418199 Pea aphid whole body normalized full le... 48 3e-08 2
(CN753005) ApHL3LD-X-H11 ApHL3LD Acyrthosiphon pisum cDNA cl... 48 3e-08 2
(EV827580) TT1EL71TH Tetrahymena thermophila SB210 cDNA libr... 44 6e-08 3
(FF502893) G709P5155RB3.T0 Acorn worm normalized neurula pEx... 40 7e-05 3
(CT779217) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 3e-04 2
(CT755521) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 3e-04 2
(CT789624) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 3e-04 2
(AL403073) T3 end of clone AT0AA006D09 of library AT0AA from... 58 4e-04 1
(FC734845) CBBG9255.rev CBBG Lottia gigantea 12,15,18h embry... 42 0.001 2
(FD462542) LARVS86TR Haematobia irritans 1st Instar Larvae H... 44 0.001 2
(FD462541) LARVS86TF Haematobia irritans 1st Instar Larvae H... 44 0.001 2
(DV018285) D6CA12.T7 Diploptera punctata corpora allata cDNA... 50 0.004 2
(AJ688101) Bos taurus EST, clone KN261-047_H23. 40 0.009 2
(FF663723) G826P5318FF5.T0 Acorn worm normalized juvenile pE... 40 0.012 2
(CT749300) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.099 3
(DJ131920) Method for identification of useful proteins deri... 34 0.28 2
(DN581517) 90116080 Sea Urchin primary mesenchyme cell cDNA ... 34 0.28 2
(EK045088) 1092959545588 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.38 1
(EJ506764) 1095403722423 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.38 1
(EJ034364) 1095454064891 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.38 1
(BH815540) AM__Ba0019P10f Apis mellifera Apis mellifera geno... 48 0.38 1
(FK916464) EST_lsal_evj_946486 lsalevj mixed_tissue_mixed_st... 48 0.38 1
(FK916463) EST_lsal_evj_941110 lsalevj mixed_tissue_mixed_st... 48 0.38 1
(EW769435) ST020023B20H08 Normalized and subtracted western ... 36 0.48 2
(EK355821) 1095468523442 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.79 2
(EV840501) TT1EC48TH Tetrahymena thermophila SB210 cDNA libr... 44 0.80 2
(AC114085) Rattus norvegicus clone CH230-32G7, WORKING DRAFT... 44 0.85 3
(ER498452) 1093015362776 Global-Ocean-Sampling_GS-35-01-01-1... 40 0.85 2
(EJ608204) 1092962024330 Global-Ocean-Sampling_GS-29-01-01-1... 36 0.87 2
(BW642061) Dugesia ryukyuensis mRNA, clone: Dr_sW_023_C20, 5... 42 0.90 2
(EJ603741) 1092961214990 Global-Ocean-Sampling_GS-29-01-01-1... 36 0.99 2
(AV020532) Mus musculus 18-day embryo cDNA, partial sequence... 34 1.1 2
(BF651283) 274093 MARC 3BOV Bos taurus cDNA 5', mRNA sequence. 40 1.4 2
(AC131428) Rattus norvegicus clone CH230-110A17, *** SEQUENC... 46 1.5 1
(AC212311) Solanum lycopersicum chromosome 05 clone C05SLm00... 46 1.5 1
(ER874893) MUGQ_CH252P262F14Sp6_CN538_059 CHORI-252 Vervet M... 46 1.5 1
(DY678581) TT1AW27TV Tetrahymena thermophila EST library str... 46 1.5 1
(CT796505) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 1.5 1
(AJ693014) Bos taurus EST, clone KN261-029_B12. 46 1.5 1
(FK158878) XABT185583.g1 Gateway compatible cien cDNA librar... 46 1.5 1
(FF690028) XABT102973.rev Gateway compatible cien cDNA libra... 46 1.5 1
(BF776990) 288776 MARC 3BOV Bos taurus cDNA 5', mRNA sequence. 40 1.7 2
(AM020012) Bos indicus 5' EST, clone C0007420o04. 40 2.0 2
(EV703587) LB02250.C21_H07 GC_BGC-22 Bos taurus cDNA clone I... 40 2.4 2
(DY464735) 1605025 MARC 11BOV Bos taurus cDNA 5', mRNA seque... 40 2.4 2
(AM026475) Bos taurus 5' EST, clone C0007398p13. 40 2.5 2
(AM026267) Bos taurus 5' EST, clone C0007394l23. 40 2.5 2
(EJ286065) 1095368021275 Global-Ocean-Sampling_GS-27-01-01-1... 40 2.5 2
(CK950102) 4075301 BARC 10BOV Bos taurus cDNA clone 10BOV2_K... 40 2.6 2
(EV711015) LB02432.C21_A09 GC_BGC-24 Bos taurus cDNA clone I... 40 2.6 2
(DY463510) 1602337 MARC 11BOV Bos taurus cDNA 3', mRNA seque... 40 2.6 2
(EE918814) C94401A FLM Bos taurus cDNA clone C9440 3', mRNA ... 40 2.6 2
(AM019170) Bos taurus 5' EST, clone C0007419g21. 40 2.7 2
(ES609225) M02e02 American mink brain Neovison vison cDNA cl... 40 2.8 2
(CO896697) BovGen_25022 normal cattle brain Bos taurus cDNA ... 40 2.8 2
(DT859820) LB00543.CR_D01 GC_BGC-05 Bos taurus cDNA clone IM... 40 2.9 2
(EV744002) LB03510.C21_E20 GC_BGC-35 Bos taurus cDNA clone I... 40 3.0 2
(EV699833) LB01449.C21_C24 GC_BGC-14 Bos taurus cDNA clone I... 40 3.0 2
(DT853124) LB0056.CR_L22 GC_BGC-05 Bos taurus cDNA clone IMA... 40 3.0 2
(BC112581) Bos taurus asparagine-linked glycosylation 5 homo... 40 3.6 2
(CP000013) Borrelia garinii PBi, complete genome. 36 3.7 10
(ER588542) 1093016185579 Global-Ocean-Sampling_GS-36-01-01-2... 42 3.7 2
(CU681855) Zebrafish DNA sequence from clone CH73-181B19 in ... 44 5.9 1
(CT583687) Zebrafish DNA sequence from clone CH211-256E16 in... 44 5.9 1
(AC162793) Mus musculus chromosome 3, clone RP24-347H11, com... 44 5.9 1
(AC138204) Mus musculus chromosome 3, clone RP23-381G8, comp... 44 5.9 1
(AC116599) Mus musculus BAC clone RP24-549N12 from 3, comple... 44 5.9 1
(AC113321) Mus musculus chromosome 3, clone RP23-445D13, com... 44 5.9 1
(AC110575) Mus musculus chromosome 3, clone RP23-326B21, com... 44 5.9 1
(AC100183) Mus musculus chromosome 3, clone RP23-54L16, comp... 44 5.9 1
(AJ133751) Spinacia oleracea mRNA for chloroplast ribosome r... 44 5.9 1
(DD278343) Ribosome recycling factor of plant. 44 5.9 1
(AC148963) Papio anubis clone RP41-266H21, WORKING DRAFT SEQ... 44 5.9 1
(AC144468) Canis familiaris clone RP81-263K15, WORKING DRAFT... 44 5.9 1
(CU928296) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.9 1
(AC207828) Chlorocebus aethiops clone CH252-192C9, WORKING D... 44 5.9 1
(AC193720) Colobus guereza clone CH272-451F1, WORKING DRAFT ... 44 5.9 1
(AC190015) Colobus guereza clone CH272-461A11, WORKING DRAFT... 44 5.9 1
(AC169989) Macaca mulatta clone CH250-2M7, WORKING DRAFT SEQ... 44 5.9 1
(AC169970) Bos taurus clone CH240-229E18, WORKING DRAFT SEQU... 44 5.9 1
(ER382643) 1094338825738 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.9 1
(EJ638048) 1093006414582 Global-Ocean-Sampling_GS-29-01-01-1... 44 5.9 1
(EJ632428) 1092964806106 Global-Ocean-Sampling_GS-29-01-01-1... 44 5.9 1
(EJ592793) 1092961060042 Global-Ocean-Sampling_GS-29-01-01-1... 44 5.9 1
(EJ528634) 1092955204759 Global-Ocean-Sampling_GS-29-01-01-1... 44 5.9 1
(EJ207427) 1092344367591 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.9 1
>(AU262927) Dictyostelium discoideum vegetative cDNA clone:VSE181,
3' end single read.
Length = 556
Score = 1015 bits (512), Expect = 0.0
Identities = 512/512 (100%)
Strand = Plus / Plus
Query: 1 gtggtgctgttaaaagaggtattttatgttcaagaggtaaatattgtttaatggtcgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggtgctgttaaaagaggtattttatgttcaagaggtaaatattgtttaatggtcgatg 60
Query: 61 cagatggtgcaacagagtttaaagatttcaatagagttgaagatattatgcacaagattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagatggtgcaacagagtttaaagatttcaatagagttgaagatattatgcacaagattg 120
Query: 121 aaaagaatgatttaggtattgtttgtggaagtagatcacacttggtcgatagtgatctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaagaatgatttaggtattgtttgtggaagtagatcacacttggtcgatagtgatctag 180
Query: 181 ttgcaaaaagatctttcttaagaaatatcttaatgtatggtttccacattttcgttcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgcaaaaagatctttcttaagaaatatcttaatgtatggtttccacattttcgttcaaa 240
Query: 241 ctttatgtgttaaaggtattaaagatactcaatgtggttttaaattattcacaagagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctttatgtgttaaaggtattaaagatactcaatgtggttttaaattattcacaagagaaa 300
Query: 301 ctgcaagaagaattttcccaacattacatattgagagatgggcatttgatgtagaaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgcaagaagaattttcccaacattacatattgagagatgggcatttgatgtagaaattt 360
Query: 361 tatatttagcacaaaaattaaatataccaattgcagaggtcgcagttaattggactgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatatttagcacaaaaattaaatataccaattgcagaggtcgcagttaattggactgaaa 420
Query: 421 tcgatggttcaaaattggacccattctcaagttcaattcaaatggcaaaagatattgttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcgatggttcaaaattggacccattctcaagttcaattcaaatggcaaaagatattgttc 480
Query: 481 gtattagatttagatatcttttaggtatttgg 512
||||||||||||||||||||||||||||||||
Sbjct: 481 gtattagatttagatatcttttaggtatttgg 512
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 636,789,713
Number of extensions: 37841176
Number of successful extensions: 3020379
Number of sequences better than 10.0: 110
Length of query: 625
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 602
Effective length of database: 93,106,754,628
Effective search space: 56050266286056
Effective search space used: 56050266286056
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.27 |
| Homology vs Protein |
Query= Contig-U10265-1 (Contig-U10265-1Q) /CSM_Contig/Contig-U10265-1Q.Seq.d
(625 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY392442_1(AY392442|pid:none) Dictyostelium discoideum dolichyl ... 353 2e-96
AF183413_1(AF183413|pid:none) Homo sapiens dolichyl-phosphate be... 213 3e-54
(Q9DB25) RecName: Full=Dolichyl-phosphate beta-glucosyltransfera... 211 1e-53
BC098039_1(BC098039|pid:none) Rattus norvegicus asparagine-linke... 210 2e-53
BC044127_1(BC044127|pid:none) Xenopus laevis asparagine-linked g... 206 3e-52
AE014134_1518(AE014134|pid:none) Drosophila melanogaster chromos... 203 4e-51
DQ440340_1(DQ440340|pid:none) Aedes aegypti clone AET-4362 dolic... 195 1e-48
FN319296_1(FN319296|pid:none) Schistosoma japonicum isolate Anhu... 190 2e-47
FN357364_23(FN357364|pid:none) Schistosoma mansoni genome sequen... 190 2e-47
CU928180_137(CU928180|pid:none) Kluyveromyces thermotolerans str... 184 2e-45
AF125965_1(AF125965|pid:none) Caenorhabditis elegans fosmid H43I... 183 4e-45
CP000497_100(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 182 9e-45
CU928181_301(CU928181|pid:none) Zygosaccharomyces rouxii strain ... 182 9e-45
CR382137_964(CR382137|pid:none) Debaryomyces hansenii strain CBS... 179 6e-44
BC112581_1(BC112581|pid:none) Bos taurus asparagine-linked glyco... 179 6e-44
CR382130_236(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 175 8e-43
T34006(T34006)hypothetical protein H43I07.2 - Caenorhabditis ele... 174 1e-42
(P40350) RecName: Full=Dolichyl-phosphate beta-glucosyltransfera... 173 3e-42
FM992695_244(FM992695|pid:none) Candida dubliniensis CD36 chromo... 169 8e-41
FN392321_567(FN392321|pid:none) Pichia pastoris GS115 chromosome... 165 1e-39
(O60061) RecName: Full=Dolichyl-phosphate beta-glucosyltransfera... 162 5e-39
BT039992_1(BT039992|pid:none) Zea mays full-length cDNA clone ZM... 156 5e-37
AK102290_1(AK102290|pid:none) Oryza sativa Japonica Group cDNA c... 150 4e-35
AC093018_25(AC093018|pid:none) Oryza sativa chromosome 3 BAC OSJ... 150 4e-35
AM270053_108(AM270053|pid:none) Aspergillus niger contig An03c01... 145 9e-34
AP007164_642(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 145 1e-33
AM475102_2(AM475102|pid:none) Vitis vinifera contig VV78X148227.... 144 3e-33
CU638744_220(CU638744|pid:none) Podospora anserina genomic DNA c... 134 2e-30
AY849631_1(AY849631|pid:none) Magnaporthe grisea dolichyl-phosph... 131 2e-29
AY321308_1(AY321308|pid:none) Ixodes ricinus dolichyl-phosphate ... 129 7e-29
CP000148_237(CP000148|pid:none) Geobacter metallireducens GS-15,... 113 5e-24
CP000142_1888(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 105 1e-21
CP000482_2654(CP000482|pid:none) Pelobacter propionicus DSM 2379... 100 4e-20
CP000448_1846(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 96 8e-19
CP000473_1017(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 92 1e-17
CP000875_757(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2... 90 4e-17
CP000875_2172(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 89 1e-16
CP001275_1480(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 84 2e-15
BX842652_78(BX842652|pid:none) Bdellovibrio bacteriovorus comple... 84 3e-15
CP000473_565(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 83 5e-15
CP000909_399(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 83 7e-15
BA000030_4556(BA000030|pid:none) Streptomyces avermitilis MA-468... 81 2e-14
CP000875_2581(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 79 8e-14
CT573213_1806(CT573213|pid:none) Frankia alni str. ACN14A chromo... 77 4e-13
CP001338_71(CP001338|pid:none) Candidatus Methanosphaerula palus... 73 6e-12
CP001472_1555(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 73 6e-12
CP000679_2537(CP000679|pid:none) Caldicellulosiruptor saccharoly... 72 2e-11
AY596297_1669(AY596297|pid:none) Haloarcula marismortui ATCC 430... 70 4e-11
CP000777_2720(CP000777|pid:none) Leptospira biflexa serovar Pato... 70 6e-11
AM698042_1(AM698042|pid:none) Haloferax volcanii aglD gene for a... 69 8e-11
CP000559_1479(CP000559|pid:none) Methanocorpusculum labreanum Z,... 68 2e-10
AY714823_43(AY714823|pid:none) Uncultured archaeon GZfos17F1 clo... 68 2e-10
AM180088_255(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 ... 67 3e-10
CP000099_493(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 67 5e-10
AY596297_3101(AY596297|pid:none) Haloarcula marismortui ATCC 430... 66 7e-10
AP009493_3565(AP009493|pid:none) Streptomyces griseus subsp. gri... 66 7e-10
CP000875_3969(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 66 7e-10
AM114193_2503(AM114193|pid:none) Uncultured methanogenic archaeo... 65 1e-09
AE016822_238(AE016822|pid:none) Leifsonia xyli subsp. xyli str. ... 64 3e-09
AE004437_252(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 64 3e-09
BA000011_902(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 64 3e-09
CP000562_722(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 63 6e-09
CP000780_2135(CP000780|pid:none) Candidatus Methanoregula boonei... 63 6e-09
CP000975_2261(CP000975|pid:none) Methylacidiphilum infernorum V4... 63 8e-09
CP000667_2099(CP000667|pid:none) Salinispora tropica CNB-440, co... 62 1e-08
CP001357_1525(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 62 1e-08
CR936257_716(CR936257|pid:none) Natronomonas pharaonis DSM 2160 ... 62 1e-08
AE010299_3765(AE010299|pid:none) Methanosarcina acetivorans str.... 62 2e-08
CP000682_1793(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 61 2e-08
CP000580_3900(CP000580|pid:none) Mycobacterium sp. JLS, complete... 61 3e-08
CP000850_2203(CP000850|pid:none) Salinispora arenicola CNS-205, ... 61 3e-08
CU458896_915(CU458896|pid:none) Mycobacterium abscessus chromoso... 61 3e-08
CP001620_359(CP001620|pid:none) Corynebacterium kroppenstedtii D... 60 5e-08
CP000431_4693(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 60 5e-08
CT573213_4752(CT573213|pid:none) Frankia alni str. ACN14A chromo... 60 6e-08
AF265258_1(AF265258|pid:none) Rhodococcus sp. S9 dolichyl-phosph... 60 6e-08
CP000511_4351(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 59 1e-07
CT573213_3898(CT573213|pid:none) Frankia alni str. ACN14A chromo... 58 2e-07
AY714866_14(AY714866|pid:none) Uncultured archaeon GZfos36D8 clo... 57 3e-07
AY714822_19(AY714822|pid:none) Uncultured archaeon GZfos17C7 clo... 57 3e-07
CP001341_2589(CP001341|pid:none) Arthrobacter chlorophenolicus A... 57 4e-07
BA000002_794(BA000002|pid:none) Aeropyrum pernix K1 DNA, complet... 57 4e-07
AE001437_2376(AE001437|pid:none) Clostridium acetobutylicum ATCC... 56 7e-07
AE010299_3971(AE010299|pid:none) Methanosarcina acetivorans str.... 56 7e-07
AY117439_13(AY117439|pid:none) Streptomyces carzinostaticus subs... 56 7e-07
CP000820_6368(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 55 2e-06
CP000480_4815(CP000480|pid:none) Mycobacterium smegmatis str. MC... 55 2e-06
CU459003_2684(CU459003|pid:none) Magnetospirillum gryphiswaldens... 54 3e-06
AE008384_840(AE008384|pid:none) Methanosarcina mazei strain Goe1... 54 3e-06
AL939118_180(AL939118|pid:none) Streptomyces coelicolor A3(2) co... 54 3e-06
BA000030_4203(BA000030|pid:none) Streptomyces avermitilis MA-468... 54 5e-06
AE000782_570(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,... 53 8e-06
CP001402_905(CP001402|pid:none) Sulfolobus islandicus M.16.4, co... 52 1e-05
CP001404_2253(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 52 2e-05
CP001401_879(CP001401|pid:none) Sulfolobus islandicus M.16.27, c... 51 2e-05
CP001324_592(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 49 1e-04
CP000867_1488(CP000867|pid:none) Methanococcus maripaludis C6, c... 49 1e-04
CP000609_415(CP000609|pid:none) Methanococcus maripaludis C5, co... 48 2e-04
CP000300_2076(CP000300|pid:none) Methanococcoides burtonii DSM 6... 48 2e-04
BX950229_1170(BX950229|pid:none) Methanococcus maripaludis strai... 47 3e-04
AP006878_1721(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 47 4e-04
AP011115_3971(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 47 4e-04
AM420293_5915(AM420293|pid:none) Saccharopolyspora erythraea NRR... 47 4e-04
CP000077_1782(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 46 7e-04
CP000155_5891(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 45 0.001
A75176(A75176) dolichyl-phosphate mannose synthase related prote... 45 0.001
CP000891_4442(CP000891|pid:none) Shewanella baltica OS195, compl... 45 0.002
CP000474_2553(CP000474|pid:none) Arthrobacter aurescens TC1, com... 45 0.002
CP000667_1737(CP000667|pid:none) Salinispora tropica CNB-440, co... 44 0.004
CP000568_3052(CP000568|pid:none) Clostridium thermocellum ATCC 2... 44 0.004
CP001390_2609(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 44 0.005
CP000850_1696(CP000850|pid:none) Salinispora arenicola CNS-205, ... 44 0.005
CP000446_3865(CP000446|pid:none) Shewanella sp. MR-4, complete g... 44 0.005
AC104433_34(AC104433|pid:none) Oryza sativa chromosome 3 BAC OJ1... 43 0.006
CP000563_71(CP000563|pid:none) Shewanella baltica OS155, complet... 42 0.011
CP000769_92(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, com... 42 0.011
CP000562_2290(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 42 0.011
CP000431_4069(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 42 0.014
AP006878_1733(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 42 0.014
AF007874_1(AF007874|pid:none) Caenorhabditis briggsae dolichol m... 42 0.014
AJ248287_222(AJ248287|pid:none) Pyrococcus abyssi complete genom... 42 0.018
AY596297_801(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 42 0.018
CP000507_112(CP000507|pid:none) Shewanella amazonensis SB2B, com... 42 0.018
CP001087_1812(CP001087|pid:none) Desulfobacterium autotrophicum ... 41 0.031
CP000111_1740(CP000111|pid:none) Prochlorococcus marinus str. MI... 40 0.053
CP000576_1689(CP000576|pid:none) Prochlorococcus marinus str. MI... 40 0.053
CP001131_2692(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 40 0.069
CP000102_53(CP000102|pid:none) Methanosphaera stadtmanae DSM 309... 39 0.091
CP000686_3986(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 39 0.091
CP000140_1267(CP000140|pid:none) Parabacteroides distasonis ATCC... 39 0.091
AE017340_131(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 39 0.091
CP001359_2781(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 39 0.12
CP001275_1550(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 39 0.15
AM743169_4305(AM743169|pid:none) Stenotrophomonas maltophilia K2... 39 0.15
BA000001_1643(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 39 0.15
BX548174_1739(BX548174|pid:none) Prochlorococcus marinus MED4 co... 39 0.15
AE005673_468(AE005673|pid:none) Caulobacter crescentus CB15, com... 38 0.26
CP000436_116(CP000436|pid:none) Haemophilus somnus 129PT, comple... 38 0.26
CP000431_828(CP000431|pid:none) Rhodococcus jostii RHA1, complet... 38 0.26
CP000778_116(CP000778|pid:none) Leptospira biflexa serovar Patoc... 38 0.26
AP010656_15(AP010656|pid:none) Candidatus Azobacteroides pseudot... 38 0.26
CP000552_1676(CP000552|pid:none) Prochlorococcus marinus str. MI... 37 0.34
AP011115_569(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl... 37 0.34
AM746676_7365(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 37 0.45
FM178380_330(FM178380|pid:none) Aliivibrio salmonicida LFI1238 c... 37 0.45
EF083644_1(EF083644|pid:none) Picea sitchensis clone WS0282_G09 ... 37 0.59
BT071474_1(BT071474|pid:none) Picea sitchensis clone WS02915_I13... 37 0.59
BX908798_1310(BX908798|pid:none) Parachlamydia-related symbiont ... 37 0.59
CP000482_2386(CP000482|pid:none) Pelobacter propionicus DSM 2379... 36 0.77
AY596297_899(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 36 0.77
CP000139_2188(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 36 0.77
AC069251_6(AC069251|pid:none) Genomic sequence for Arabidopsis t... 36 0.77
AY085986_1(AY085986|pid:none) Arabidopsis thaliana clone 20443 m... 36 0.77
CP000348_1807(CP000348|pid:none) Leptospira borgpetersenii serov... 36 1.0
AP009153_1612(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 36 1.0
AM270368_22(AM270368|pid:none) Aspergillus niger contig An16c016... 35 1.3
CP000855_1829(CP000855|pid:none) Thermococcus onnurineus NA1, co... 35 1.3
CP000383_1550(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 35 1.3
FM954972_695(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 35 1.3
CP000058_413(CP000058|pid:none) Pseudomonas syringae pv. phaseol... 35 1.7
CP000587_447(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 35 1.7
CP000825_1258(CP000825|pid:none) Prochlorococcus marinus str. MI... 35 1.7
CP000559_896(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 35 1.7
BA000040_4442(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 35 2.2
(P47117) RecName: Full=Actin-related protein 3; AltName: Full=Ac... 34 2.9
CP001100_356(CP001100|pid:none) Chloroherpeton thalassium ATCC 3... 34 2.9
CP000142_2828(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 34 2.9
AP008957_3703(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 34 3.8
CP000449_11(CP000449|pid:none) Maricaulis maris MCS10, complete ... 34 3.8
AE009439_880(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 34 3.8
AB294750_5(AB294750|pid:none) Uncultured bacterium genomic DNA, ... 34 3.8
AM711867_2100(AM711867|pid:none) Clavibacter michiganensis subsp... 34 3.8
CP000863_523(CP000863|pid:none) Acinetobacter baumannii ACICU, c... 34 3.8
CP001322_2201(CP001322|pid:none) Desulfatibacillum alkenivorans ... 34 3.8
AP009153_864(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DNA... 33 5.0
AE010299_1151(AE010299|pid:none) Methanosarcina acetivorans str.... 33 5.0
CP000478_144(CP000478|pid:none) Syntrophobacter fumaroxidans MPO... 33 5.0
AP006841_3437(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 33 6.5
CP000462_3298(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 33 6.5
(A9A9F2) RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subun... 33 6.5
AE016853_4972(AE016853|pid:none) Pseudomonas syringae pv. tomato... 33 6.5
CT978603_262(CT978603|pid:none) Synechococcus sp. RCC307 genomic... 33 6.5
CP000115_1525(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 33 6.5
CR931661_15(CR931661|pid:none) Streptococcus pneumoniae strain 3... 33 6.5
CP000521_492(CP000521|pid:none) Acinetobacter baumannii ATCC 179... 33 6.5
CP000875_3608(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 33 8.5
CR543861_511(CR543861|pid:none) Acinetobacter sp. ADP1 complete ... 33 8.5
CP000473_461(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 33 8.5
CP000937_1480(CP000937|pid:none) Francisella philomiragia subsp.... 33 8.5
CR937010_41(CR937010|pid:none) uncultured archaeon fos0114d2+13a9. 33 8.5
CU928179_72(CU928179|pid:none) Zygosaccharomyces rouxii strain C... 33 8.5
CU928163_3866(CU928163|pid:none) Escherichia coli UMN026 chromos... 33 8.5
AM398681_1228(AM398681|pid:none) Flavobacterium psychrophilum JI... 33 8.5
>AY392442_1(AY392442|pid:none) Dictyostelium discoideum dolichyl
phosphate glucosyltransferase gene, partial cds; and
alkaline dihydroceramidase (dcd3A) gene, complete cds.
Length = 289
Score = 353 bits (907), Expect = 2e-96
Identities = 174/174 (100%), Positives = 174/174 (100%)
Frame = +3
Query: 3 GAVKRGILCSRGKYCLMVDADGATEFKDFNRVEDIMHKIEKNDLGIVCGSRSHLVDSDLV 182
GAVKRGILCSRGKYCLMVDADGATEFKDFNRVEDIMHKIEKNDLGIVCGSRSHLVDSDLV
Sbjct: 116 GAVKRGILCSRGKYCLMVDADGATEFKDFNRVEDIMHKIEKNDLGIVCGSRSHLVDSDLV 175
Query: 183 AKRSFLRNILMYGFHIFVQTLCVKGIKDTQCGFKLFTRETARRIFPTLHIERWAFDVEIL 362
AKRSFLRNILMYGFHIFVQTLCVKGIKDTQCGFKLFTRETARRIFPTLHIERWAFDVEIL
Sbjct: 176 AKRSFLRNILMYGFHIFVQTLCVKGIKDTQCGFKLFTRETARRIFPTLHIERWAFDVEIL 235
Query: 363 YLAQKLNIPIAEVAVNWTEIDGSKLDPFSSSIQMAKDIVRIRFRYLLGIWKIKS 524
YLAQKLNIPIAEVAVNWTEIDGSKLDPFSSSIQMAKDIVRIRFRYLLGIWKIKS
Sbjct: 236 YLAQKLNIPIAEVAVNWTEIDGSKLDPFSSSIQMAKDIVRIRFRYLLGIWKIKS 289
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 882,576,931
Number of extensions: 16346709
Number of successful extensions: 40920
Number of sequences better than 10.0: 193
Number of HSP's gapped: 40820
Number of HSP's successfully gapped: 193
Length of query: 208
Length of database: 1,040,966,779
Length adjustment: 123
Effective length of query: 85
Effective length of database: 646,839,724
Effective search space: 54981376540
Effective search space used: 54981376540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |