Contig-U10237-1 |
Contig ID |
Contig-U10237-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1062 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
1796977 |
End point |
1798039 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
5 |
Number of EST |
8 |
Link to clone list |
U10237 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.18 |
Homology vs DNA |
Query= Contig-U10237-1 (Contig-U10237-1Q) /CSM_Contig/Contig-U10237-1Q.Seq.d (1062 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ435629) Dictyostelium discoideum cDNA clone:ddv27a21, 3' ... 1314 0.0 1 (AU062119) Dictyostelium discoideum slug cDNA, clone SLH679. 1074 0.0 2 (BJ416908) Dictyostelium discoideum cDNA clone:ddv27a21, 5' ... 650 0.0 2 (BJ346946) Dictyostelium discoideum cDNA clone:dda25k16, 3' ... 914 0.0 2 (BJ432336) Dictyostelium discoideum cDNA clone:ddv18l09, 3' ... 811 0.0 2 (AU267649) Dictyostelium discoideum vegetative cDNA clone:VS... 391 0.0 2 (AU267650) Dictyostelium discoideum vegetative cDNA clone:VS... 565 e-180 3 (BJ414206) Dictyostelium discoideum cDNA clone:ddv18l09, 5' ... 488 e-169 2 (AU270403) Dictyostelium discoideum vegetative cDNA clone:VS... 434 e-141 2 (AU270404) Dictyostelium discoideum vegetative cDNA clone:VS... 422 e-134 2 (AU039382) Dictyostelium discoideum slug cDNA, clone SLH679. 107 9e-19 1 (CS397890) Sequence 7165 from Patent WO2006025879. 54 3e-09 4 (CS217846) Sequence 7165 from Patent WO2005111246. 54 3e-09 4 (CS394248) Sequence 3523 from Patent WO2006025879. 54 3e-09 4 (CS214204) Sequence 3523 from Patent WO2005111246. 54 3e-09 4 (BE579233) kq24d04.y1 TBN95TM-SSR Strongyloides stercoralis ... 48 6e-09 3 (BG227773) kq13c03.y1 TBN95TM-SSR Strongyloides stercoralis ... 48 8e-09 3 (EY502913) CBBP6629.rev CBBP Hirudo medicinalis hermaphrodit... 42 2e-08 4 (EY483666) CBBP13113.rev CBBP Hirudo medicinalis hermaphrodi... 42 2e-08 4 (EY481295) CBBP11299.rev CBBP Hirudo medicinalis hermaphrodi... 42 2e-08 4 (DC439626) Gryllus bimaculatus mRNA, clone:GB00364-13_H11, 5... 44 2e-07 2 (EX200281) SGT20p3_H08 normalized library from a mix of tamm... 60 2e-07 2 (EX199077) SGT20l1_D03 normalized library from a mix of tamm... 60 2e-07 2 (DC447565) Gryllus bimaculatus mRNA, clone:GBpAP009_C18, uns... 44 2e-07 2 (EG326423) EST_27 Caste=Worker, Stage=Adult Vespula squamosa... 46 8e-07 3 (EG325909) EST_1773 Caste=Male, Stage=Pupa Vespula squamosa ... 46 9e-07 3 (EV260120) MTYE404TF JCVI-MT1 Medicago truncatula cDNA 5', m... 56 3e-06 2 (BG582476) EST484221 GVN Medicago truncatula cDNA clone pGVN... 56 3e-06 2 (DW017018) EST1225979 MTY Medicago truncatula cDNA clone MTY... 56 3e-06 2 (DW016562) EST1225523 MTY Medicago truncatula cDNA clone MTY... 56 3e-06 2 (BF641058) NF057F06IN1F1058 Insect herbivory Medicago trunca... 56 3e-06 2 (BE205386) EST398062 KV0 Medicago truncatula cDNA clone pKV0... 56 3e-06 2 (AW586746) EST318369 MHAM Medicago truncatula/Glomus versifo... 56 3e-06 2 (BI267368) NF103B12IN1F1101 Insect herbivory Medicago trunca... 56 3e-06 2 (BG447985) NF104G03EC1F1022 Elicited cell culture Medicago t... 56 3e-06 2 (AW587053) EST318676 MHAM Medicago truncatula/Glomus versifo... 56 3e-06 2 (CX523996) s13dNF12D08AT062_447336 Aphid-Infected Shoots Med... 56 3e-06 2 (AW693213) NF061E10ST1F1000 Developing stem Medicago truncat... 56 3e-06 2 (AL374043) Medicago truncatula EST MtBB04D02F1 : T3 end of c... 56 3e-06 2 (BQ147684) NF045F03FL1F1030 Developing flower Medicago trunc... 56 3e-06 2 (CX524409) s13dNF15E03AT019_448162 Aphid-Infected Shoots Med... 56 3e-06 2 (AJ502988) Medicago truncatula EST, clone mtgmadc120028b09. 56 3e-06 2 (AL376767) Medicago truncatula EST MtBB26A07F1 : T3 end of c... 56 3e-06 2 (AW691257) NF042G03ST1F1000 Developing stem Medicago truncat... 56 3e-06 2 (EC761982) PSE00002296 rw_mgpallid Polysphondylium pallidum ... 48 3e-06 2 (EV534473) 1323 Sminthopsis fibroblast Library Sminthopsis c... 42 4e-06 3 (EY505088) CBBP9613.fwd CBBP Hirudo medicinalis hermaphrodit... 42 9e-06 3 (EY483667) CBBP13113.fwd CBBP Hirudo medicinalis hermaphrodi... 42 9e-06 3 (CV285730) tak54f06.y1 Hydra EST Kiel 6 Hydra oligactis cDNA... 48 5e-05 2 (CV284456) tak54f06.x1 Hydra EST Kiel 6 Hydra oligactis cDNA... 48 5e-05 2 (CV285667) tak52e09.y1 Hydra EST Kiel 6 Hydra oligactis cDNA... 48 5e-05 2 (CV284373) tak52e09.x1 Hydra EST Kiel 6 Hydra oligactis cDNA... 48 5e-05 2 (FK017703) GLNCQ67TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 48 6e-05 2 (CV439251) EST893164 BEA Rhipicephalus microplus cDNA clone ... 52 2e-04 2 (CV439250) EST893163 BEA Rhipicephalus microplus cDNA clone ... 52 2e-04 2 (EC361078) IMMUNEF088883H6 POSSUM_01-C-POSSUM-IMMUNE-2KB Tri... 44 2e-04 2 (DT608056) ACAG-aab22f09.g1 Hydra_EST_UCI-9 Hydra magnipapil... 48 2e-04 3 (CV444615) EST898528 BEA Rhipicephalus microplus cDNA clone ... 52 2e-04 2 (CK186865) EST776180 BEA Rhipicephalus microplus cDNA clone ... 52 3e-04 2 (CV444616) EST898529 BEA Rhipicephalus microplus cDNA clone ... 52 3e-04 2 (CB890590) taa75b04.x1 Hydra EST -III Hydra magnipapillata c... 48 3e-04 3 (CD567554) tab79a12.x1 Hydra EST -III Hydra magnipapillata c... 48 4e-04 3 (CB889752) taa40g10.x3 Hydra EST -III Hydra magnipapillata c... 48 4e-04 3 (BP518016) Hydra magnipapillata cDNA, clone:hmp_14846. 48 4e-04 3 (DN815851) ACAC-aac16b02.g1 Hydra EST UCI 7 Hydra magnipapil... 48 4e-04 3 (CN552072) tae19b01.x1 Hydra EST Darmstadt I Hydra magnipapi... 48 4e-04 3 (DT612243) ACAG-aaa87e04.g1 Hydra_EST_UCI-9 Hydra magnipapil... 48 4e-04 3 (CN551664) tad76d12.x2 Hydra EST Darmstadt I Hydra magnipapi... 48 4e-04 3 (DB919698) Idiosepius paradoxus cDNA, clone:Ip_aB_035_O23, 5... 38 5e-04 3 (CV185548) taj14g03.x1 Hydra EST UCI 5 ALP Hydra magnipapill... 48 6e-04 3 (EX523384) ALF-R-11_2007-07-21_1/ALF(R)-11_C13_031_1 Alfalfa... 48 7e-04 2 (EV278120) GLNA314TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 48 7e-04 2 (FK018855) GLND403TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 48 7e-04 2 (CD784146) EST655507 RAA Rhipicephalus appendiculatus cDNA c... 50 7e-04 2 (EV270843) GLMB030TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 48 7e-04 2 (FK018746) GLND282TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 48 7e-04 2 (BM094782) saj21c06.y1 Gm-c1066 Glycine max cDNA clone GENOM... 48 7e-04 2 (FG991231) GLLDQ52TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 48 7e-04 2 (CD778527) EST649888 RAA Rhipicephalus appendiculatus cDNA c... 50 0.001 2 (CD795006) EST666367 RAB Rhipicephalus appendiculatus cDNA c... 50 0.001 2 (CD795005) EST666366 RAB Rhipicephalus appendiculatus cDNA c... 50 0.001 2 (AC185524) Medicago truncatula clone mth2-62g23, complete se... 56 0.003 1 (AC138464) Medicago truncatula chromosome 6 clone mth2-29i23... 56 0.003 1 (AC202502) Medicago truncatula clone mth2-37i1, WORKING DRAF... 56 0.003 1 (DT002282) Mdrta1017N05.g1 Apple_EST_Mdrta Malus x domestica... 56 0.003 1 (DR998314) Mdfb8006J20.g1 Apple_EST_Mdfb Malus x domestica c... 56 0.003 1 (CX022833) Mdlv4-4045i16.y1 Mdlv4 Malus x domestica cDNA clo... 56 0.003 1 (CO902653) Mdfrt3058j19.y1 Mdfrt Malus x domestica cDNA clon... 56 0.003 1 (CO068182) Mdfrt3029a04.y1 Mdfrt Malus x domestica cDNA clon... 56 0.003 1 (CN931682) 000427AFBC006183HT (AFBC) Royal Gala pre-opened f... 56 0.003 1 (CN929005) 000601AEPA006278HT (AEPA) Pinkie expanding leaf M... 56 0.003 1 (CN908379) 030121ABLC002082HT (ABLC) Braeburn cell culture t... 56 0.003 1 (CN897378) 010701AAZA002948HT (AAZA) M9 xylem Malus x domest... 56 0.003 1 (CN891101) 010513AAXA002299HT (AAXA) Royal Gala 126 DAFB fru... 56 0.003 1 (CN884023) 010814AASB005882HT (AASB) Royal Gala 10 DAFB frui... 56 0.003 1 (CN883036) 010813AASB003601HT (AASB) Royal Gala 10 DAFB frui... 56 0.003 1 (EY019915) CBAB2977.g1:P T. versicolor self root extracts re... 56 0.003 1 (EY019914) CBAB2977.b1:P T. versicolor self root extracts re... 56 0.003 1 (CX622424) GABR1_63_H03.g2_A002 GA- or brassinolide-treated ... 44 0.006 3 (AR548571) Sequence 3702 from patent US 6747137. 50 0.007 2
>(BJ435629) Dictyostelium discoideum cDNA clone:ddv27a21, 3' end, single read. Length = 778
Score = 1314 bits (663), Expect = 0.0 Identities = 663/663 (100%) Strand = Plus / Minus
Query: 212 cacgcagccaattcgtcgtggtcatcaagtttacactcaagtctgtagcacatgtcacag 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 778 cacgcagccaattcgtcgtggtcatcaagtttacactcaagtctgtagcacatgtcacag 719
Query: 272 tttaaatttaatttcttatcgtcatttagcaaatgttgcatataccccagaggaattgaa 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 718 tttaaatttaatttcttatcgtcatttagcaaatgttgcatataccccagaggaattgaa 659
Query: 332 agcaatggctgctgataccaccgttatggatggtccagattctgaaggtgatatgtttga 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 658 agcaatggctgctgataccaccgttatggatggtccagattctgaaggtgatatgtttga 599
Query: 392 acgtaaaggtcaagtcaccgatttccatccaaaaccatacccaaattcaaacgcagctcg 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 598 acgtaaaggtcaagtcaccgatttccatccaaaaccatacccaaattcaaacgcagctcg 539
Query: 452 tttcgcaaacaatggtgccctcccaccagatctttcattagttattaaagcccgtggtgc 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 tttcgcaaacaatggtgccctcccaccagatctttcattagttattaaagcccgtggtgc 479
Query: 512 ccatgaggattatgtattctcattattaactggttattgtgaaccaccagctggtgtacg 571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 ccatgaggattatgtattctcattattaactggttattgtgaaccaccagctggtgtacg 419
Query: 572 tgttgttggtggtcaatactttaatccatacttcccaggtactaaaattgctatggcccc 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 tgttgttggtggtcaatactttaatccatacttcccaggtactaaaattgctatggcccc 359
Query: 632 accacttgctgatggtatggtcgaatatgatgatggtactgataactcgatgtcacaaat 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 accacttgctgatggtatggtcgaatatgatgatggtactgataactcgatgtcacaaat 299
Query: 692 ggcaaaggatgtttccactttcctttgttgggcatctgaaccagaacatgacgatagaaa 751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 ggcaaaggatgtttccactttcctttgttgggcatctgaaccagaacatgacgatagaaa 239
Query: 752 gaaattaggtatgaaggttctccttggtgtttccatcattgctctcccacttttctactg 811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 gaaattaggtatgaaggttctccttggtgtttccatcattgctctcccacttttctactg 179
Query: 812 gaagagattaaaatggagtgttatcaaaacaagaaagatttcattcaaagattaaaattt 871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 gaagagattaaaatggagtgttatcaaaacaagaaagatttcattcaaagattaaaattt 119
Query: 872 ttc 874 ||| Sbjct: 118 ttc 116
Score = 89.7 bits (45), Expect = 2e-13 Identities = 45/45 (100%) Strand = Plus / Minus
Query: 945 catttttcacaaattaaaacgtgtatacaataacatcattttcat 989 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 45 catttttcacaaattaaaacgtgtatacaataacatcattttcat 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,050,561,842 Number of extensions: 60595624 Number of successful extensions: 4772654 Number of sequences better than 10.0: 323 Length of query: 1062 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1038 Effective length of database: 97,308,875,965 Effective search space: 101006613251670 Effective search space used: 101006613251670 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.27 |
Homology vs Protein |
Query= Contig-U10237-1 (Contig-U10237-1Q) /CSM_Contig/Contig-U10237-1Q.Seq.d (1062 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BC082790_1(BC082790|pid:none) Mus musculus cytochrome c-1, mRNA ... 284 3e-75 BC107503_1(BC107503|pid:none) Danio rerio cytochrome c-1, mRNA (... 284 4e-75 BC080245_1(BC080245|pid:none) Danio rerio cytochrome c-1, mRNA (... 284 4e-75 AK002815_1(AK002815|pid:none) Mus musculus adult male kidney cDN... 283 7e-75 S00680(A31481;S00680;A29720) ubiquinol-cytochrome-c reductase (E... 281 2e-74 AY890936_1(AY890936|pid:none) Synthetic construct Homo sapiens c... 281 2e-74 (P08574) RecName: Full=Cytochrome c1, heme protein, mitochondria... 281 2e-74 M16597_1(M16597|pid:none) Human cytochrome c1 mRNA, partial cds. 279 1e-73 BC063367_1(BC063367|pid:none) Xenopus tropicalis hypothetical pr... 277 5e-73 BC099350_1(BC099350|pid:none) Xenopus laevis hypothetical protei... 272 2e-71 BC045127_1(BC045127|pid:none) Xenopus laevis cytochrome c-1, mRN... 271 4e-71 AK070578_1(AK070578|pid:none) Oryza sativa Japonica Group cDNA c... 266 9e-70 AE017346_67(AE017346|pid:none) Cryptococcus neoformans var. neof... 265 3e-69 EU957184_1(EU957184|pid:none) Zea mays clone 1585268 cytochrome ... 263 1e-68 BT084394_1(BT084394|pid:none) Zea mays full-length cDNA clone ZM... 263 1e-68 BT036609_1(BT036609|pid:none) Zea mays full-length cDNA clone ZM... 263 1e-68 AC138464_21(AC138464|pid:none) Medicago truncatula clone mth2-29... 262 2e-68 AK069403_1(AK069403|pid:none) Oryza sativa Japonica Group cDNA c... 261 3e-68 EF146593_1(EF146593|pid:none) Populus trichocarpa clone WS01210_... 261 4e-68 S20015(S20015) ubiquinol-cytochrome-c reductase (EC 1.10.2.2) cy... 260 6e-68 AK229445_1(AK229445|pid:none) Arabidopsis thaliana mRNA for cyto... 258 2e-67 CR954217_179(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 258 3e-67 S66866_1(S66866|pid:none) Solanum tuberosum cytochrome c1 precur... 256 7e-67 (P25076) RecName: Full=Cytochrome c1-1, heme protein, mitochondr... 256 9e-67 AP000381_6(AP000381|pid:none) Arabidopsis thaliana genomic DNA, ... 254 3e-66 DQ443190_1(DQ443190|pid:none) Bombyx mori cytochrome c1 mRNA, co... 254 3e-66 AY088099_1(AY088099|pid:none) Arabidopsis thaliana clone 41320 m... 254 3e-66 AJ518951_1(AJ518951|pid:none) Bos taurus partial cyc1 gene for c... 253 6e-66 EF082643_1(EF082643|pid:none) Picea sitchensis clone WS02716_I16... 250 7e-65 DQ440286_1(DQ440286|pid:none) Aedes aegypti clone AET-364 mitoch... 245 2e-63 FN357298_44(FN357298|pid:none) Schistosoma mansoni genome sequen... 245 2e-63 CU633901_389(CU633901|pid:none) Podospora anserina genomic DNA c... 236 2e-62 CU928174_673(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 235 4e-62 (P07143) RecName: Full=Cytochrome c1, heme protein, mitochondria... 236 5e-62 CR382135_280(CR382135|pid:none) Debaryomyces hansenii strain CBS... 238 7e-62 FM992689_448(FM992689|pid:none) Candida dubliniensis CD36 chromo... 237 9e-62 FN318342_1(FN318342|pid:none) Schistosoma japonicum isolate Anhu... 239 1e-61 (P07142) RecName: Full=Cytochrome c1, heme protein, mitochondria... 237 2e-61 CR380958_444(CR380958|pid:none) Candida glabrata strain CBS138 c... 233 2e-61 AE014187_595(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 238 3e-61 CR940353_348(CR940353|pid:none) Theileria annulata strain Ankara... 238 3e-61 BT057115_1(BT057115|pid:none) Salmo salar clone ssal-eve-526-090... 235 2e-60 FN392321_1025(FN392321|pid:none) Pichia pastoris GS115 chromosom... 233 2e-60 AM910994_429(AM910994|pid:none) Plasmodium knowlesi strain H chr... 234 3e-60 AP007151_768(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 222 4e-59 AJ235271_46(AJ235271|pid:none) Rickettsia prowazekii strain Madr... 220 6e-56 AE014297_4523(AE014297|pid:none) Drosophila melanogaster chromos... 220 7e-56 CP000087_830(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 219 1e-55 CP001612_292(CP001612|pid:none) Rickettsia africae ESF-5, comple... 219 1e-55 CP000053_1007(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 218 2e-55 CP000848_377(CP000848|pid:none) Rickettsia rickettsii str. 'Shei... 217 6e-55 CP000766_393(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 217 6e-55 CP000613_3352(CP000613|pid:none) Rhodospirillum centenum SW, com... 215 2e-54 CP000847_365(CP000847|pid:none) Rickettsia akari str. Hartford, ... 215 2e-54 CP001227_286(CP001227|pid:none) Rickettsia peacockii str. Rustic... 215 2e-54 DQ228959_1(DQ228959|pid:none) Toxoplasma gondii mitochondrial cy... 214 4e-54 CP000409_305(CP000409|pid:none) Rickettsia canadensis str. McKie... 214 4e-54 CP000758_1609(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 211 3e-53 AE008917_474(AE008917|pid:none) Brucella melitensis 16M chromoso... 208 3e-52 CP000708_1368(CP000708|pid:none) Brucella ovis ATCC 25840 chromo... 208 3e-52 CP000107_495(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 203 9e-51 CP000738_1521(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 199 1e-49 (P20114) RecName: Full=Cytochrome c1, heme protein; AltName: Ful... 198 3e-49 CP000774_2235(CP000774|pid:none) Parvibaculum lavamentivorans DS... 196 9e-49 AL591688_1823(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 196 9e-49 CP000319_3073(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 195 2e-48 CP000133_2996(CP000133|pid:none) Rhizobium etli CFN 42, complete... 194 3e-48 CR925677_516(CR925677|pid:none) Ehrlichia ruminantium str. Garde... 193 1e-47 CR767821_523(CR767821|pid:none) Ehrlichia ruminantium strain Wel... 192 1e-47 BA000012_2089(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 192 2e-47 CP000390_2151(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 191 3e-47 AM236080_3485(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 191 4e-47 CP000494_2172(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 190 6e-47 B97628(B97628)cytochrome c1 (AF109172) [imported] - Agrobacteriu... 189 2e-46 AD2851(AD2851) cytochrome c1 fbcC [imported] - Agrobacterium tum... 189 2e-46 CP001191_2743(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 189 2e-46 AE007869_2183(AE007869|pid:none) Agrobacterium tumefaciens str. ... 189 2e-46 CP000628_2413(CP000628|pid:none) Agrobacterium radiobacter K84 c... 189 2e-46 CP000250_1199(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 188 2e-46 BX640510_9(BX640510|pid:none) Magnetospirillum gryphiswaldense, ... 188 3e-46 CU459003_2602(CU459003|pid:none) Magnetospirillum gryphiswaldens... 188 3e-46 AE017321_770(AE017321|pid:none) Wolbachia endosymbiont strain TR... 186 2e-45 CP001391_930(CP001391|pid:none) Wolbachia sp. wRi, complete geno... 184 3e-45 AE017196_956(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 184 3e-45 (P51131) RecName: Full=Cytochrome b/c1; Contains: RecName: Ful... 184 6e-45 CP000301_916(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 183 8e-45 AM999887_734(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 183 8e-45 AY810050_1(AY810050|pid:none) Schistosoma japonicum SJCHGC04186 ... 181 3e-44 AM494944_6(AM494944|pid:none) Leishmania braziliensis chromosome... 181 3e-44 (P23135) RecName: Full=Cytochrome c1; Flags: Precursor; &CCQF1R... 181 3e-44 CT005246_7(CT005246|pid:none) Leishmania major strain Friedlin, ... 180 9e-44 AM502225_43(AM502225|pid:none) Leishmania infantum chromosome 7. 179 1e-43 CP000356_1331(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 179 1e-43 AY805120_1(AY805120|pid:none) Ornithogalum virens clone 3OvF39 p... 176 9e-43 CP001280_3696(CP001280|pid:none) Methylocella silvestris BL2, co... 176 2e-42 CP000943_6453(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 173 8e-42 CP001001_449(CP001001|pid:none) Methylobacterium radiotolerans J... 173 1e-41 CP001349_7219(CP001349|pid:none) Methylobacterium nodulans ORS 2... 172 2e-41 CP000157_2729(CP000157|pid:none) Erythrobacter litoralis HTCC259... 169 2e-40 BT052414_1(BT052414|pid:none) Medicago truncatula clone MTYFD_FE... 167 4e-40 AK073125_1(AK073125|pid:none) Oryza sativa Japonica Group cDNA c... 167 4e-40 A59369(A59369) ubiquinol-cytochrome-c reductase (EC 1.10.2.2) cy... 167 6e-40 CP001016_155(CP001016|pid:none) Beijerinckia indica subsp. indic... 159 2e-37 CP001298_2636(CP001298|pid:none) Methylobacterium chloromethanic... 152 2e-35 CP000158_348(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 150 9e-35 (P81379) RecName: Full=Cytochrome c1; Flags: Precursor; &JQ0347... 147 6e-34 CP000009_546(CP000009|pid:none) Gluconobacter oxydans 621H, comp... 144 4e-33 BT084111_1(BT084111|pid:none) Zea mays full-length cDNA clone ZM... 138 4e-31 AY942535_1(AY942535|pid:none) Saccharomyces cerevisiae strain Y1... 129 7e-30 CP001029_2438(CP001029|pid:none) Methylobacterium populi BJ001, ... 127 7e-28 CP000031_264(CP000031|pid:none) Ruegeria pomeroyi DSS-3, complet... 121 4e-26 CP000471_353(CP000471|pid:none) Magnetococcus sp. MC-1, complete... 110 6e-23 CP000377_2811(CP000377|pid:none) Silicibacter sp. TM1040, comple... 110 8e-23 (Q02760) RecName: Full=Cytochrome c1; Flags: Precursor; &S13870... 108 4e-22 CP001150_2792(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 107 5e-22 CP000822_1222(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 107 5e-22 CP000362_529(CP000362|pid:none) Roseobacter denitrificans OCh 11... 107 9e-22 (P13627) RecName: Full=Cytochrome c1; Flags: Precursor; &C29413... 106 2e-21 CR925678_526(CR925678|pid:none) Ehrlichia ruminantium str. Welge... 98 4e-19 S65505_1(S65505|pid:none) cytochrome c1 {5' region} [Crithidia f... 90 2e-16 S65506_1(S65506|pid:none) cytochrome c1 {5' region} [Bodo caudat... 87 1e-15 CR925678_525(CR925678|pid:none) Ehrlichia ruminantium str. Welge... 86 2e-15 AY090551_1(AY090551|pid:none) Deschampsia antarctica clone Dacor... 75 3e-12 AE016825_4006(AE016825|pid:none) Chromobacterium violaceum ATCC ... 66 2e-09 AC138464_14(AC138464|pid:none) Medicago truncatula clone mth2-29... 65 3e-09 AM743169_1519(AM743169|pid:none) Stenotrophomonas maltophilia K2... 65 5e-09 AM286690_580(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 64 7e-09 CP000270_3979(CP000270|pid:none) Burkholderia xenovorans LB400 c... 63 2e-08 AE017282_1853(AE017282|pid:none) Methylococcus capsulatus str. B... 63 2e-08 CP001050_2205(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945... 62 3e-08 AM421808_1861(AM421808|pid:none) Neisseria meningitidis serogrou... 62 3e-08 AE004969_1866(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, ... 62 3e-08 CP000323_1578(CP000323|pid:none) Psychrobacter cryohalolentis K5... 62 3e-08 CP000469_597(CP000469|pid:none) Shewanella sp. ANA-3, complete g... 62 3e-08 CP000444_3401(CP000444|pid:none) Shewanella sp. MR-7, complete g... 62 3e-08 CP000503_665(CP000503|pid:none) Shewanella sp. W3-18-1, complete... 60 1e-07 CP000302_3178(CP000302|pid:none) Shewanella denitrificans OS217,... 60 1e-07 AE014299_601(AE014299|pid:none) Shewanella oneidensis MR-1, comp... 60 1e-07 CP001252_3639(CP001252|pid:none) Shewanella baltica OS223, compl... 60 2e-07 CP000563_556(CP000563|pid:none) Shewanella baltica OS155, comple... 60 2e-07 CP000606_571(CP000606|pid:none) Shewanella loihica PV-4, complet... 59 3e-07 CP000821_801(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 59 3e-07 CP000116_1831(CP000116|pid:none) Thiobacillus denitrificans ATCC... 59 3e-07 CP000713_786(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 58 5e-07 CP000961_4119(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 58 5e-07 CP000681_3250(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 58 6e-07 CP001154_2870(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 57 8e-07 AM747720_335(AM747720|pid:none) Burkholderia cenocepacia J2315 c... 57 1e-06 CP000931_3593(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 55 3e-06 CR555306_635(CR555306|pid:none) Azoarcus sp. EbN1 complete genome. 55 3e-06 CP000151_360(CP000151|pid:none) Burkholderia sp. 383 chromosome ... 55 3e-06 CP000090_3069(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 55 4e-06 CP000851_3518(CP000851|pid:none) Shewanella pealeana ATCC 700345... 54 7e-06 CP000352_3214(CP000352|pid:none) Ralstonia metallidurans CH34, c... 54 7e-06 CP000086_2919(CP000086|pid:none) Burkholderia thailandensis E264... 54 9e-06 CP001068_3159(CP001068|pid:none) Ralstonia pickettii 12J chromos... 54 1e-05 AP009385_2851(AP009385|pid:none) Burkholderia multivorans ATCC 1... 53 2e-05 CP000967_1859(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 53 2e-05 CP000447_3279(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 53 2e-05 AE008923_2414(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 53 2e-05 AM039952_2632(AM039952|pid:none) Xanthomonas campestris pv. vesi... 53 2e-05 AE008922_2281(AE008922|pid:none) Xanthomonas campestris pv. camp... 52 3e-05 AE016795_566(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 52 3e-05 CP001013_928(CP001013|pid:none) Leptothrix cholodnii SP-6, compl... 52 3e-05 CP000941_1762(CP000941|pid:none) Xylella fastidiosa M12, complet... 50 1e-04 CP000546_1777(CP000546|pid:none) Burkholderia mallei NCTC 10229 ... 49 2e-04 CP000010_2356(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 49 2e-04 AP009247_10(AP009247|pid:none) Candidatus Vesicomyosocius okutan... 49 2e-04 CR628337_2642(CR628337|pid:none) Legionella pneumophila str. Len... 49 4e-04 CP000644_303(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 48 5e-04 AE009442_1701(AE009442|pid:none) Xylella fastidiosa Temecula1, c... 48 5e-04 FM954972_384(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 48 7e-04 AL954747_811(AL954747|pid:none) Nitrosomonas europaea ATCC 19718... 47 9e-04 CT573326_4188(CT573326|pid:none) Pseudomonas entomophila str. L4... 47 0.001 AE003849_907(AE003849|pid:none) Xylella fastidiosa 9a5c, complet... 47 0.001 CP000510_2706(CP000510|pid:none) Psychromonas ingrahamii 37, com... 47 0.001 CP000884_5483(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 47 0.001 AM181176_823(AM181176|pid:none) Pseudomonas fluorescens SBW25 co... 47 0.001 CP000655_126(CP000655|pid:none) Polynucleobacter necessarius sub... 46 0.002 AE017354_2653(AE017354|pid:none) Legionella pneumophila subsp. p... 46 0.003 CP000675_2881(CP000675|pid:none) Legionella pneumophila str. Cor... 46 0.003 CR628336_2763(CR628336|pid:none) Legionella pneumophila str. Par... 46 0.003 CR954246_2462(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 46 0.003 AE015451_1309(AE015451|pid:none) Pseudomonas putida KT2440 compl... 44 0.007 CP000926_4500(CP000926|pid:none) Pseudomonas putida GB-1, comple... 44 0.010 CP000094_4685(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 43 0.016 CP000304_1054(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 43 0.021 CP000076_5006(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 42 0.047 CP000103_997(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 42 0.047 AE017340_417(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 41 0.062 AE004091_4428(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 41 0.081 CP000744_4941(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 41 0.081 CR378673_170(CR378673|pid:none) Photobacterium profundum SS9; se... 40 0.14 BX640436_100(BX640436|pid:none) Bordetella parapertussis strain ... 40 0.18 AY876892_1(AY876892|pid:none) Xylella fastidiosa clone ALS-6 Pet... 39 0.23 AY876888_1(AY876888|pid:none) Xylella fastidiosa clone Dixon Pet... 39 0.23 AM902716_120(AM902716|pid:none) Bordetella petrii strain DSM 128... 39 0.31 CP000153_1911(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 39 0.31 BX640411_274(BX640411|pid:none) Bordetella pertussis strain Toha... 39 0.31 AP009179_210(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic D... 38 0.52 AY876890_1(AY876890|pid:none) Xylella fastidiosa clone ALS-2 Pet... 38 0.52 CP001217_1533(CP001217|pid:none) Helicobacter pylori P12, comple... 38 0.68 AB281426_3(AB281426|pid:none) Helicobacter pylori petA, petB, pe... 37 0.89 AY876873_1(AY876873|pid:none) Xylella fastidiosa clone Temecula ... 37 1.2 AX055102_1(AX055102|pid:none) Sequence 9 from Patent WO0073502. ... 37 1.2 DQ443426_1(DQ443426|pid:none) Bombyx mori hepatoma-derived growt... 37 1.2 EU496708_1(EU496708|pid:none) Xylella fastidiosa clone CO1 PetC ... 37 1.5 AY876882_1(AY876882|pid:none) Xylella fastidiosa clone Ann-1 Pet... 36 2.6 AL451085_22(AL451085|pid:none) Human DNA sequence from clone RP1... 36 2.6 AY876885_1(AY876885|pid:none) Xylella fastidiosa clone Cathedral... 36 2.6 (Q8NFF5) RecName: Full=FAD synthetase; EC=2.7.7.2; AltN... 36 2.6 AK090542_1(AK090542|pid:none) Homo sapiens cDNA FLJ33223 fis, cl... 36 2.6 CP000091_893(CP000091|pid:none) Ralstonia eutropha JMP134 chromo... 36 2.6 Z70265_1(Z70265|pid:none) Caenorhabditis elegans Cosmid C05A9, c... 35 4.4 T18937(T18937)hypothetical protein C05A9.3 - Caenorhabditis eleg... 35 4.4 AB385229_1(AB385229|pid:none) Synthetic construct DNA, clone: pF... 35 5.8 (Q6PJG2) RecName: Full=Uncharacterized protein C14orf43; 35 5.8 BC025330_1(BC025330|pid:none) Homo sapiens chromosome 14 open re... 35 5.8 AK127785_1(AK127785|pid:none) Homo sapiens cDNA FLJ45886 fis, cl... 35 5.8 BC006511_1(BC006511|pid:none) Homo sapiens chromosome 14 open re... 35 5.8 BC009202_1(BC009202|pid:none) Homo sapiens chromosome 14 open re... 34 7.5 CP000814_1126(CP000814|pid:none) Campylobacter jejuni subsp. jej... 34 9.9 EU960760_1(EU960760|pid:none) Zea mays clone 228371 hypothetical... 34 9.9 AL111168_1118(AL111168|pid:none) Campylobacter jejuni subsp. jej... 34 9.9 CP000025_1276(CP000025|pid:none) Campylobacter jejuni RM1221, co... 34 9.9 CP000768_447(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 34 9.9
>BC082790_1(BC082790|pid:none) Mus musculus cytochrome c-1, mRNA (cDNA clone IMAGE:30243293), partial cds. Length = 318
Score = 284 bits (727), Expect = 3e-75 Identities = 136/232 (58%), Positives = 177/232 (76%), Gaps = 1/232 (0%) Frame = +3
Query: 168 PHTHGNIVSHGNHMITQPIRRGHQVYTQVCSTCHSLNLISYRHLANVAYTPEELKAMAAD 347 P +H ++S +H IRRG QVY QVCS+CHS++ ++YRHL V YT EE KA+A + Sbjct: 88 PWSHRGLLSSLDHT---SIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEEEAKALAEE 144
Query: 348 TTVMDGPDSEGDMFERKGQVTDFHPKPYPNSNAARFANNGALPPDLSLVIKARGAHEDYV 527 V DGP+ +G+MF R G+++D+ PKPYPN AAR ANNGALPPDLS +++AR EDYV Sbjct: 145 VEVQDGPNDDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYV 204
Query: 528 FSLLTGYCEPPAGVRVVGGQYFNPYFPGTKIAMAPPLADGMVEYDDGTDNSMSQMAKDVS 707 FSLLTGYCEPP GV + G YFNPYFPG I MAPP+ ++EYDDGT +MSQ+AKDV+ Sbjct: 205 FSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYTEVLEYDDGTPATMSQVAKDVA 264
Query: 708 TFLCWASEPEHDDRKKLGMKVLLGVSIIALPLFY-WKRLKWSVIKTRKISFK 860 TFL WASEPEHD RK++G+K+LL + ++ LPL Y KR KWSV+K+RK++++ Sbjct: 265 TFLRWASEPEHDHRKRMGLKMLLMMGLL-LPLTYAMKRHKWSVLKSRKLAYR 315
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 1,679,078,461 Number of extensions: 35030580 Number of successful extensions: 95458 Number of sequences better than 10.0: 226 Number of HSP's gapped: 94873 Number of HSP's successfully gapped: 246 Length of query: 354 Length of database: 1,040,966,779 Length adjustment: 129 Effective length of query: 225 Effective length of database: 627,614,014 Effective search space: 141213153150 Effective search space used: 141213153150 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
0 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |