Contig-U10237-1
Contig ID Contig-U10237-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10237-1 (Contig-U10237-1Q) /CSM_Contig/Contig-U10237-1Q.Seq.d
GCACTCATTAGAGACATATAAGAAAAAACAGATCAAAATGTTTTCTCAAA
AATTGCTTGCAAATGGTAAATTATTAAGTAAATTAGCAATTGTTAGTGGT
GTTGTAGGTACAGCAACAGCAATTACTACATCAACAACTCTTTTATCAGA
TGATTTTGTTCAACCAACCTCATACCCATGGGAACATCGTTTCCCATGGC
AATCATATGATCACGCAGCCAATTCGTCGTGGTCATCAAGTTTACACTCA
AGTCTGTAGCACATGTCACAGTTTAAATTTAATTTCTTATCGTCATTTAG
CAAATGTTGCATATACCCCAGAGGAATTGAAAGCAATGGCTGCTGATACC
ACCGTTATGGATGGTCCAGATTCTGAAGGTGATATGTTTGAACGTAAAGG
TCAAGTCACCGATTTCCATCCAAAACCATACCCAAATTCAAACGCAGCTC
GTTTCGCAAACAATGGTGCCCTCCCACCAGATCTTTCATTAGTTATTAAA
GCCCGTGGTGCCCATGAGGATTATGTATTCTCATTATTAACTGGTTATTG
TGAACCACCAGCTGGTGTACGTGTTGTTGGTGGTCAATACTTTAATCCAT
ACTTCCCAGGTACTAAAATTGCTATGGCCCCACCACTTGCTGATGGTATG
GTCGAATATGATGATGGTACTGATAACTCGATGTCACAAATGGCAAAGGA
TGTTTCCACTTTCCTTTGTTGGGCATCTGAACCAGAACATGACGATAGAA
AGAAATTAGGTATGAAGGTTCTCCTTGGTGTTTCCATCATTGCTCTCCCA
CTTTTCTACTGGAAGAGATTAAAATGGAGTGTTATCAAAACAAGAAAGAT
TTCATTCAAAGATTAAAATTTTTCATAATACCAATAATAATAATAATAAT
AATAATAATAATAATATCAATATAATAATAATAATAATAATAATCATTTT
TCACAAATTAAAACGTGTATACAATAACATCATTTTCATATAATGATGAA
ATAAATAAAAAAAAATAAAAAAAAAACAACAAAAATAATAATTTTAAAAA
TATAAAAAAAAA

Gap no gap
Contig length 1062
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1796977
End point 1798039
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 8
Link to clone list U10237
List of clone(s)

est1=VFN181E,-33,990
est2=SLH679F,22,761
est3=VSH574F,23,418
est4=VFI738E,149,1053
est5=VSH574Z,528,1053
est6=VSJ744F,653,1063
est7=VSJ744Z,653,1053
est8=SLH679Z,906,1056
Translated Amino Acid sequence
th*rhirknrskcflknclqmvny*vn*qllvvl*VQQQQLLHQQLFYQMILFNQPHTHG
NIVSHGNHMITQPIRRGHQVYTQVCSTCHSLNLISYRHLANVAYTPEELKAMAADTTVMD
GPDSEGDMFERKGQVTDFHPKPYPNSNAARFANNGALPPDLSLVIKARGAHEDYVFSLLT
GYCEPPAGVRVVGGQYFNPYFPGTKIAMAPPLADGMVEYDDGTDNSMSQMAKDVSTFLCW
ASEPEHDDRKKLGMKVLLGVSIIALPLFYWKRLKWSVIKTRKISFKD*nfs*yq******
****yqynnnnnnnhfsqiktciq*hhfhimmk*ikknkkkttkiiilki*kk


Translated Amino Acid sequence (All Frames)
Frame A:
alirdi*ektdqnvfskiackw*iik*isnc*wccrysnsnyyinnsfir*fcstnlipm
gtsfpmaii*srsqfvvvikftlksvahvtv*i*flivi*qmlhipqrn*kqwllipplw
mvqilkviclnvkvkspisiqnhtqiqtqlvsqtmvpshqifh*llkpvvpmrimyshy*
lvivnhqlvyvllvvntlihtsqvlkllwphhllmvwsnmmmvlitrchkwqrmfplsfv
ghlnqnmtiern*v*rfslvfpsllshfstgrd*ngvlskqerfhskikifhntnnnnnn
nnnnniniiiiiiiiifhklkrvynniifi***nk*kkikkkqqk**f*kykkk


Frame B:
hsletykkkqikmfsqkllangkllsklaivsgvvgtataittsttllsddfvqptsypw
ehrfpwqsydhaansswssslhssl*hmsqfkfnflssfskcciyprgiesngc*yhryg
wsrf*r*yv*t*rsshrfpsktipkfkrssfrkqwcpptrsfisy*spwcp*glciliin
wll*ttswctccwwsil*silpry*ncygpttc*wygri**wy**ldvtngkgcfhfpll
gi*trt*r*keiryegspwcfhhcsptflleeikmecyqnkkdfiqrlkffiipiiiiii
iiiiisi*******sfftn*nvytitsfsyndeinkkk*kknnknnnfknikk


Frame C:
th*rhirknrskcflknclqmvny*vn*qllvvl*VQQQQLLHQQLFYQMILFNQPHTHG
NIVSHGNHMITQPIRRGHQVYTQVCSTCHSLNLISYRHLANVAYTPEELKAMAADTTVMD
GPDSEGDMFERKGQVTDFHPKPYPNSNAARFANNGALPPDLSLVIKARGAHEDYVFSLLT
GYCEPPAGVRVVGGQYFNPYFPGTKIAMAPPLADGMVEYDDGTDNSMSQMAKDVSTFLCW
ASEPEHDDRKKLGMKVLLGVSIIALPLFYWKRLKWSVIKTRKISFKD*nfs*yq******
****yqynnnnnnnhfsqiktciq*hhfhimmk*ikknkkkttkiiilki*kk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10237-1 (Contig-U10237-1Q)
/CSM_Contig/Contig-U10237-1Q.Seq.d
(1062 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10237-1 (Contig-U10237-1Q) /CSM_Contig/Conti... 1733 0.0
Contig-U01095-1 (Contig-U01095-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti... 36 0.075
Contig-U06348-1 (Contig-U06348-1Q) /CSM_Contig/Conti... 36 0.075
Contig-U14400-1 (Contig-U14400-1Q) /CSM_Contig/Conti... 34 0.30
Contig-U13927-1 (Contig-U13927-1Q) /CSM_Contig/Conti... 34 0.30
Contig-U12828-1 (Contig-U12828-1Q) /CSM_Contig/Conti... 34 0.30
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti... 34 0.30
Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Conti... 34 0.30
Contig-U11176-1 (Contig-U11176-1Q) /CSM_Contig/Conti... 34 0.30

>Contig-U10237-1 (Contig-U10237-1Q) /CSM_Contig/Contig-U10237-1Q.Seq.d
Length = 1062

Score = 1733 bits (874), Expect = 0.0
Identities = 874/874 (100%)
Strand = Plus / Plus


Query: 1 gcactcattagagacatataagaaaaaacagatcaaaatgttttctcaaaaattgcttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcactcattagagacatataagaaaaaacagatcaaaatgttttctcaaaaattgcttgc 60


Query: 61 aaatggtaaattattaagtaaattagcaattgttagtggtgttgtaggtacagcaacagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaatggtaaattattaagtaaattagcaattgttagtggtgttgtaggtacagcaacagc 120


Query: 121 aattactacatcaacaactcttttatcagatgattttgttcaaccaacctcatacccatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattactacatcaacaactcttttatcagatgattttgttcaaccaacctcatacccatg 180


Query: 181 ggaacatcgtttcccatggcaatcatatgatcacgcagccaattcgtcgtggtcatcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaacatcgtttcccatggcaatcatatgatcacgcagccaattcgtcgtggtcatcaag 240


Query: 241 tttacactcaagtctgtagcacatgtcacagtttaaatttaatttcttatcgtcatttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttacactcaagtctgtagcacatgtcacagtttaaatttaatttcttatcgtcatttag 300


Query: 301 caaatgttgcatataccccagaggaattgaaagcaatggctgctgataccaccgttatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaatgttgcatataccccagaggaattgaaagcaatggctgctgataccaccgttatgg 360


Query: 361 atggtccagattctgaaggtgatatgtttgaacgtaaaggtcaagtcaccgatttccatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggtccagattctgaaggtgatatgtttgaacgtaaaggtcaagtcaccgatttccatc 420


Query: 421 caaaaccatacccaaattcaaacgcagctcgtttcgcaaacaatggtgccctcccaccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaaaccatacccaaattcaaacgcagctcgtttcgcaaacaatggtgccctcccaccag 480


Query: 481 atctttcattagttattaaagcccgtggtgcccatgaggattatgtattctcattattaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atctttcattagttattaaagcccgtggtgcccatgaggattatgtattctcattattaa 540


Query: 541 ctggttattgtgaaccaccagctggtgtacgtgttgttggtggtcaatactttaatccat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctggttattgtgaaccaccagctggtgtacgtgttgttggtggtcaatactttaatccat 600


Query: 601 acttcccaggtactaaaattgctatggccccaccacttgctgatggtatggtcgaatatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acttcccaggtactaaaattgctatggccccaccacttgctgatggtatggtcgaatatg 660


Query: 661 atgatggtactgataactcgatgtcacaaatggcaaaggatgtttccactttcctttgtt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgatggtactgataactcgatgtcacaaatggcaaaggatgtttccactttcctttgtt 720


Query: 721 gggcatctgaaccagaacatgacgatagaaagaaattaggtatgaaggttctccttggtg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gggcatctgaaccagaacatgacgatagaaagaaattaggtatgaaggttctccttggtg 780


Query: 781 tttccatcattgctctcccacttttctactggaagagattaaaatggagtgttatcaaaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tttccatcattgctctcccacttttctactggaagagattaaaatggagtgttatcaaaa 840


Query: 841 caagaaagatttcattcaaagattaaaatttttc 874
||||||||||||||||||||||||||||||||||
Sbjct: 841 caagaaagatttcattcaaagattaaaatttttc 874


Score = 107 bits (54), Expect = 2e-23
Identities = 54/54 (100%)
Strand = Plus / Plus


Query: 945 catttttcacaaattaaaacgtgtatacaataacatcattttcatataatgatg 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 catttttcacaaattaaaacgtgtatacaataacatcattttcatataatgatg 998


>Contig-U01095-1 (Contig-U01095-1Q) /CSM_Contig/Contig-U01095-1Q.Seq.d
Length = 1131

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 114 caacagcaattactacatcaacaac 138
||||||||||||||||| |||||||
Sbjct: 382 caacagcaattactacaacaacaac 406


>Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Contig-U11414-1Q.Seq.d
Length = 1931

Score = 36.2 bits (18), Expect = 0.075
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 114 caacagcaattactacatcaacaact 139
||||| |||||||| |||||||||||
Sbjct: 947 caacaacaattacttcatcaacaact 972


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9555
Number of Sequences: 6905
Number of extensions: 9555
Number of successful extensions: 1014
Number of sequences better than 10.0: 96
length of query: 1062
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1046
effective length of database: 5,564,391
effective search space: 5820352986
effective search space used: 5820352986
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U10237-1 (Contig-U10237-1Q) /CSM_Contig/Contig-U10237-1Q.Seq.d
(1062 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ435629) Dictyostelium discoideum cDNA clone:ddv27a21, 3' ... 1314 0.0 1
(AU062119) Dictyostelium discoideum slug cDNA, clone SLH679. 1074 0.0 2
(BJ416908) Dictyostelium discoideum cDNA clone:ddv27a21, 5' ... 650 0.0 2
(BJ346946) Dictyostelium discoideum cDNA clone:dda25k16, 3' ... 914 0.0 2
(BJ432336) Dictyostelium discoideum cDNA clone:ddv18l09, 3' ... 811 0.0 2
(AU267649) Dictyostelium discoideum vegetative cDNA clone:VS... 391 0.0 2
(AU267650) Dictyostelium discoideum vegetative cDNA clone:VS... 565 e-180 3
(BJ414206) Dictyostelium discoideum cDNA clone:ddv18l09, 5' ... 488 e-169 2
(AU270403) Dictyostelium discoideum vegetative cDNA clone:VS... 434 e-141 2
(AU270404) Dictyostelium discoideum vegetative cDNA clone:VS... 422 e-134 2
(AU039382) Dictyostelium discoideum slug cDNA, clone SLH679. 107 9e-19 1
(CS397890) Sequence 7165 from Patent WO2006025879. 54 3e-09 4
(CS217846) Sequence 7165 from Patent WO2005111246. 54 3e-09 4
(CS394248) Sequence 3523 from Patent WO2006025879. 54 3e-09 4
(CS214204) Sequence 3523 from Patent WO2005111246. 54 3e-09 4
(BE579233) kq24d04.y1 TBN95TM-SSR Strongyloides stercoralis ... 48 6e-09 3
(BG227773) kq13c03.y1 TBN95TM-SSR Strongyloides stercoralis ... 48 8e-09 3
(EY502913) CBBP6629.rev CBBP Hirudo medicinalis hermaphrodit... 42 2e-08 4
(EY483666) CBBP13113.rev CBBP Hirudo medicinalis hermaphrodi... 42 2e-08 4
(EY481295) CBBP11299.rev CBBP Hirudo medicinalis hermaphrodi... 42 2e-08 4
(DC439626) Gryllus bimaculatus mRNA, clone:GB00364-13_H11, 5... 44 2e-07 2
(EX200281) SGT20p3_H08 normalized library from a mix of tamm... 60 2e-07 2
(EX199077) SGT20l1_D03 normalized library from a mix of tamm... 60 2e-07 2
(DC447565) Gryllus bimaculatus mRNA, clone:GBpAP009_C18, uns... 44 2e-07 2
(EG326423) EST_27 Caste=Worker, Stage=Adult Vespula squamosa... 46 8e-07 3
(EG325909) EST_1773 Caste=Male, Stage=Pupa Vespula squamosa ... 46 9e-07 3
(EV260120) MTYE404TF JCVI-MT1 Medicago truncatula cDNA 5', m... 56 3e-06 2
(BG582476) EST484221 GVN Medicago truncatula cDNA clone pGVN... 56 3e-06 2
(DW017018) EST1225979 MTY Medicago truncatula cDNA clone MTY... 56 3e-06 2
(DW016562) EST1225523 MTY Medicago truncatula cDNA clone MTY... 56 3e-06 2
(BF641058) NF057F06IN1F1058 Insect herbivory Medicago trunca... 56 3e-06 2
(BE205386) EST398062 KV0 Medicago truncatula cDNA clone pKV0... 56 3e-06 2
(AW586746) EST318369 MHAM Medicago truncatula/Glomus versifo... 56 3e-06 2
(BI267368) NF103B12IN1F1101 Insect herbivory Medicago trunca... 56 3e-06 2
(BG447985) NF104G03EC1F1022 Elicited cell culture Medicago t... 56 3e-06 2
(AW587053) EST318676 MHAM Medicago truncatula/Glomus versifo... 56 3e-06 2
(CX523996) s13dNF12D08AT062_447336 Aphid-Infected Shoots Med... 56 3e-06 2
(AW693213) NF061E10ST1F1000 Developing stem Medicago truncat... 56 3e-06 2
(AL374043) Medicago truncatula EST MtBB04D02F1 : T3 end of c... 56 3e-06 2
(BQ147684) NF045F03FL1F1030 Developing flower Medicago trunc... 56 3e-06 2
(CX524409) s13dNF15E03AT019_448162 Aphid-Infected Shoots Med... 56 3e-06 2
(AJ502988) Medicago truncatula EST, clone mtgmadc120028b09. 56 3e-06 2
(AL376767) Medicago truncatula EST MtBB26A07F1 : T3 end of c... 56 3e-06 2
(AW691257) NF042G03ST1F1000 Developing stem Medicago truncat... 56 3e-06 2
(EC761982) PSE00002296 rw_mgpallid Polysphondylium pallidum ... 48 3e-06 2
(EV534473) 1323 Sminthopsis fibroblast Library Sminthopsis c... 42 4e-06 3
(EY505088) CBBP9613.fwd CBBP Hirudo medicinalis hermaphrodit... 42 9e-06 3
(EY483667) CBBP13113.fwd CBBP Hirudo medicinalis hermaphrodi... 42 9e-06 3
(CV285730) tak54f06.y1 Hydra EST Kiel 6 Hydra oligactis cDNA... 48 5e-05 2
(CV284456) tak54f06.x1 Hydra EST Kiel 6 Hydra oligactis cDNA... 48 5e-05 2
(CV285667) tak52e09.y1 Hydra EST Kiel 6 Hydra oligactis cDNA... 48 5e-05 2
(CV284373) tak52e09.x1 Hydra EST Kiel 6 Hydra oligactis cDNA... 48 5e-05 2
(FK017703) GLNCQ67TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 48 6e-05 2
(CV439251) EST893164 BEA Rhipicephalus microplus cDNA clone ... 52 2e-04 2
(CV439250) EST893163 BEA Rhipicephalus microplus cDNA clone ... 52 2e-04 2
(EC361078) IMMUNEF088883H6 POSSUM_01-C-POSSUM-IMMUNE-2KB Tri... 44 2e-04 2
(DT608056) ACAG-aab22f09.g1 Hydra_EST_UCI-9 Hydra magnipapil... 48 2e-04 3
(CV444615) EST898528 BEA Rhipicephalus microplus cDNA clone ... 52 2e-04 2
(CK186865) EST776180 BEA Rhipicephalus microplus cDNA clone ... 52 3e-04 2
(CV444616) EST898529 BEA Rhipicephalus microplus cDNA clone ... 52 3e-04 2
(CB890590) taa75b04.x1 Hydra EST -III Hydra magnipapillata c... 48 3e-04 3
(CD567554) tab79a12.x1 Hydra EST -III Hydra magnipapillata c... 48 4e-04 3
(CB889752) taa40g10.x3 Hydra EST -III Hydra magnipapillata c... 48 4e-04 3
(BP518016) Hydra magnipapillata cDNA, clone:hmp_14846. 48 4e-04 3
(DN815851) ACAC-aac16b02.g1 Hydra EST UCI 7 Hydra magnipapil... 48 4e-04 3
(CN552072) tae19b01.x1 Hydra EST Darmstadt I Hydra magnipapi... 48 4e-04 3
(DT612243) ACAG-aaa87e04.g1 Hydra_EST_UCI-9 Hydra magnipapil... 48 4e-04 3
(CN551664) tad76d12.x2 Hydra EST Darmstadt I Hydra magnipapi... 48 4e-04 3
(DB919698) Idiosepius paradoxus cDNA, clone:Ip_aB_035_O23, 5... 38 5e-04 3
(CV185548) taj14g03.x1 Hydra EST UCI 5 ALP Hydra magnipapill... 48 6e-04 3
(EX523384) ALF-R-11_2007-07-21_1/ALF(R)-11_C13_031_1 Alfalfa... 48 7e-04 2
(EV278120) GLNA314TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 48 7e-04 2
(FK018855) GLND403TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 48 7e-04 2
(CD784146) EST655507 RAA Rhipicephalus appendiculatus cDNA c... 50 7e-04 2
(EV270843) GLMB030TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 48 7e-04 2
(FK018746) GLND282TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 48 7e-04 2
(BM094782) saj21c06.y1 Gm-c1066 Glycine max cDNA clone GENOM... 48 7e-04 2
(FG991231) GLLDQ52TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 48 7e-04 2
(CD778527) EST649888 RAA Rhipicephalus appendiculatus cDNA c... 50 0.001 2
(CD795006) EST666367 RAB Rhipicephalus appendiculatus cDNA c... 50 0.001 2
(CD795005) EST666366 RAB Rhipicephalus appendiculatus cDNA c... 50 0.001 2
(AC185524) Medicago truncatula clone mth2-62g23, complete se... 56 0.003 1
(AC138464) Medicago truncatula chromosome 6 clone mth2-29i23... 56 0.003 1
(AC202502) Medicago truncatula clone mth2-37i1, WORKING DRAF... 56 0.003 1
(DT002282) Mdrta1017N05.g1 Apple_EST_Mdrta Malus x domestica... 56 0.003 1
(DR998314) Mdfb8006J20.g1 Apple_EST_Mdfb Malus x domestica c... 56 0.003 1
(CX022833) Mdlv4-4045i16.y1 Mdlv4 Malus x domestica cDNA clo... 56 0.003 1
(CO902653) Mdfrt3058j19.y1 Mdfrt Malus x domestica cDNA clon... 56 0.003 1
(CO068182) Mdfrt3029a04.y1 Mdfrt Malus x domestica cDNA clon... 56 0.003 1
(CN931682) 000427AFBC006183HT (AFBC) Royal Gala pre-opened f... 56 0.003 1
(CN929005) 000601AEPA006278HT (AEPA) Pinkie expanding leaf M... 56 0.003 1
(CN908379) 030121ABLC002082HT (ABLC) Braeburn cell culture t... 56 0.003 1
(CN897378) 010701AAZA002948HT (AAZA) M9 xylem Malus x domest... 56 0.003 1
(CN891101) 010513AAXA002299HT (AAXA) Royal Gala 126 DAFB fru... 56 0.003 1
(CN884023) 010814AASB005882HT (AASB) Royal Gala 10 DAFB frui... 56 0.003 1
(CN883036) 010813AASB003601HT (AASB) Royal Gala 10 DAFB frui... 56 0.003 1
(EY019915) CBAB2977.g1:P T. versicolor self root extracts re... 56 0.003 1
(EY019914) CBAB2977.b1:P T. versicolor self root extracts re... 56 0.003 1
(CX622424) GABR1_63_H03.g2_A002 GA- or brassinolide-treated ... 44 0.006 3
(AR548571) Sequence 3702 from patent US 6747137. 50 0.007 2

>(BJ435629) Dictyostelium discoideum cDNA clone:ddv27a21, 3' end,
single read.
Length = 778

Score = 1314 bits (663), Expect = 0.0
Identities = 663/663 (100%)
Strand = Plus / Minus


Query: 212 cacgcagccaattcgtcgtggtcatcaagtttacactcaagtctgtagcacatgtcacag 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cacgcagccaattcgtcgtggtcatcaagtttacactcaagtctgtagcacatgtcacag 719


Query: 272 tttaaatttaatttcttatcgtcatttagcaaatgttgcatataccccagaggaattgaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tttaaatttaatttcttatcgtcatttagcaaatgttgcatataccccagaggaattgaa 659


Query: 332 agcaatggctgctgataccaccgttatggatggtccagattctgaaggtgatatgtttga 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agcaatggctgctgataccaccgttatggatggtccagattctgaaggtgatatgtttga 599


Query: 392 acgtaaaggtcaagtcaccgatttccatccaaaaccatacccaaattcaaacgcagctcg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 acgtaaaggtcaagtcaccgatttccatccaaaaccatacccaaattcaaacgcagctcg 539


Query: 452 tttcgcaaacaatggtgccctcccaccagatctttcattagttattaaagcccgtggtgc 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tttcgcaaacaatggtgccctcccaccagatctttcattagttattaaagcccgtggtgc 479


Query: 512 ccatgaggattatgtattctcattattaactggttattgtgaaccaccagctggtgtacg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccatgaggattatgtattctcattattaactggttattgtgaaccaccagctggtgtacg 419


Query: 572 tgttgttggtggtcaatactttaatccatacttcccaggtactaaaattgctatggcccc 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgttgttggtggtcaatactttaatccatacttcccaggtactaaaattgctatggcccc 359


Query: 632 accacttgctgatggtatggtcgaatatgatgatggtactgataactcgatgtcacaaat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 accacttgctgatggtatggtcgaatatgatgatggtactgataactcgatgtcacaaat 299


Query: 692 ggcaaaggatgtttccactttcctttgttgggcatctgaaccagaacatgacgatagaaa 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggcaaaggatgtttccactttcctttgttgggcatctgaaccagaacatgacgatagaaa 239


Query: 752 gaaattaggtatgaaggttctccttggtgtttccatcattgctctcccacttttctactg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaaattaggtatgaaggttctccttggtgtttccatcattgctctcccacttttctactg 179


Query: 812 gaagagattaaaatggagtgttatcaaaacaagaaagatttcattcaaagattaaaattt 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaagagattaaaatggagtgttatcaaaacaagaaagatttcattcaaagattaaaattt 119


Query: 872 ttc 874
|||
Sbjct: 118 ttc 116

Score = 89.7 bits (45), Expect = 2e-13
Identities = 45/45 (100%)
Strand = Plus / Minus


Query: 945 catttttcacaaattaaaacgtgtatacaataacatcattttcat 989
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 catttttcacaaattaaaacgtgtatacaataacatcattttcat 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,050,561,842
Number of extensions: 60595624
Number of successful extensions: 4772654
Number of sequences better than 10.0: 323
Length of query: 1062
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1038
Effective length of database: 97,308,875,965
Effective search space: 101006613251670
Effective search space used: 101006613251670
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10237-1 (Contig-U10237-1Q) /CSM_Contig/Contig-U10237-1Q.Seq.d
(1062 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC082790_1(BC082790|pid:none) Mus musculus cytochrome c-1, mRNA ... 284 3e-75
BC107503_1(BC107503|pid:none) Danio rerio cytochrome c-1, mRNA (... 284 4e-75
BC080245_1(BC080245|pid:none) Danio rerio cytochrome c-1, mRNA (... 284 4e-75
AK002815_1(AK002815|pid:none) Mus musculus adult male kidney cDN... 283 7e-75
S00680(A31481;S00680;A29720) ubiquinol-cytochrome-c reductase (E... 281 2e-74
AY890936_1(AY890936|pid:none) Synthetic construct Homo sapiens c... 281 2e-74
(P08574) RecName: Full=Cytochrome c1, heme protein, mitochondria... 281 2e-74
M16597_1(M16597|pid:none) Human cytochrome c1 mRNA, partial cds. 279 1e-73
BC063367_1(BC063367|pid:none) Xenopus tropicalis hypothetical pr... 277 5e-73
BC099350_1(BC099350|pid:none) Xenopus laevis hypothetical protei... 272 2e-71
BC045127_1(BC045127|pid:none) Xenopus laevis cytochrome c-1, mRN... 271 4e-71
AK070578_1(AK070578|pid:none) Oryza sativa Japonica Group cDNA c... 266 9e-70
AE017346_67(AE017346|pid:none) Cryptococcus neoformans var. neof... 265 3e-69
EU957184_1(EU957184|pid:none) Zea mays clone 1585268 cytochrome ... 263 1e-68
BT084394_1(BT084394|pid:none) Zea mays full-length cDNA clone ZM... 263 1e-68
BT036609_1(BT036609|pid:none) Zea mays full-length cDNA clone ZM... 263 1e-68
AC138464_21(AC138464|pid:none) Medicago truncatula clone mth2-29... 262 2e-68
AK069403_1(AK069403|pid:none) Oryza sativa Japonica Group cDNA c... 261 3e-68
EF146593_1(EF146593|pid:none) Populus trichocarpa clone WS01210_... 261 4e-68
S20015(S20015) ubiquinol-cytochrome-c reductase (EC 1.10.2.2) cy... 260 6e-68
AK229445_1(AK229445|pid:none) Arabidopsis thaliana mRNA for cyto... 258 2e-67
CR954217_179(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 258 3e-67
S66866_1(S66866|pid:none) Solanum tuberosum cytochrome c1 precur... 256 7e-67
(P25076) RecName: Full=Cytochrome c1-1, heme protein, mitochondr... 256 9e-67
AP000381_6(AP000381|pid:none) Arabidopsis thaliana genomic DNA, ... 254 3e-66
DQ443190_1(DQ443190|pid:none) Bombyx mori cytochrome c1 mRNA, co... 254 3e-66
AY088099_1(AY088099|pid:none) Arabidopsis thaliana clone 41320 m... 254 3e-66
AJ518951_1(AJ518951|pid:none) Bos taurus partial cyc1 gene for c... 253 6e-66
EF082643_1(EF082643|pid:none) Picea sitchensis clone WS02716_I16... 250 7e-65
DQ440286_1(DQ440286|pid:none) Aedes aegypti clone AET-364 mitoch... 245 2e-63
FN357298_44(FN357298|pid:none) Schistosoma mansoni genome sequen... 245 2e-63
CU633901_389(CU633901|pid:none) Podospora anserina genomic DNA c... 236 2e-62
CU928174_673(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 235 4e-62
(P07143) RecName: Full=Cytochrome c1, heme protein, mitochondria... 236 5e-62
CR382135_280(CR382135|pid:none) Debaryomyces hansenii strain CBS... 238 7e-62
FM992689_448(FM992689|pid:none) Candida dubliniensis CD36 chromo... 237 9e-62
FN318342_1(FN318342|pid:none) Schistosoma japonicum isolate Anhu... 239 1e-61
(P07142) RecName: Full=Cytochrome c1, heme protein, mitochondria... 237 2e-61
CR380958_444(CR380958|pid:none) Candida glabrata strain CBS138 c... 233 2e-61
AE014187_595(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 238 3e-61
CR940353_348(CR940353|pid:none) Theileria annulata strain Ankara... 238 3e-61
BT057115_1(BT057115|pid:none) Salmo salar clone ssal-eve-526-090... 235 2e-60
FN392321_1025(FN392321|pid:none) Pichia pastoris GS115 chromosom... 233 2e-60
AM910994_429(AM910994|pid:none) Plasmodium knowlesi strain H chr... 234 3e-60
AP007151_768(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 222 4e-59
AJ235271_46(AJ235271|pid:none) Rickettsia prowazekii strain Madr... 220 6e-56
AE014297_4523(AE014297|pid:none) Drosophila melanogaster chromos... 220 7e-56
CP000087_830(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 219 1e-55
CP001612_292(CP001612|pid:none) Rickettsia africae ESF-5, comple... 219 1e-55
CP000053_1007(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 218 2e-55
CP000848_377(CP000848|pid:none) Rickettsia rickettsii str. 'Shei... 217 6e-55
CP000766_393(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 217 6e-55
CP000613_3352(CP000613|pid:none) Rhodospirillum centenum SW, com... 215 2e-54
CP000847_365(CP000847|pid:none) Rickettsia akari str. Hartford, ... 215 2e-54
CP001227_286(CP001227|pid:none) Rickettsia peacockii str. Rustic... 215 2e-54
DQ228959_1(DQ228959|pid:none) Toxoplasma gondii mitochondrial cy... 214 4e-54
CP000409_305(CP000409|pid:none) Rickettsia canadensis str. McKie... 214 4e-54
CP000758_1609(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 211 3e-53
AE008917_474(AE008917|pid:none) Brucella melitensis 16M chromoso... 208 3e-52
CP000708_1368(CP000708|pid:none) Brucella ovis ATCC 25840 chromo... 208 3e-52
CP000107_495(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 203 9e-51
CP000738_1521(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 199 1e-49
(P20114) RecName: Full=Cytochrome c1, heme protein; AltName: Ful... 198 3e-49
CP000774_2235(CP000774|pid:none) Parvibaculum lavamentivorans DS... 196 9e-49
AL591688_1823(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 196 9e-49
CP000319_3073(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 195 2e-48
CP000133_2996(CP000133|pid:none) Rhizobium etli CFN 42, complete... 194 3e-48
CR925677_516(CR925677|pid:none) Ehrlichia ruminantium str. Garde... 193 1e-47
CR767821_523(CR767821|pid:none) Ehrlichia ruminantium strain Wel... 192 1e-47
BA000012_2089(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 192 2e-47
CP000390_2151(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 191 3e-47
AM236080_3485(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 191 4e-47
CP000494_2172(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 190 6e-47
B97628(B97628)cytochrome c1 (AF109172) [imported] - Agrobacteriu... 189 2e-46
AD2851(AD2851) cytochrome c1 fbcC [imported] - Agrobacterium tum... 189 2e-46
CP001191_2743(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 189 2e-46
AE007869_2183(AE007869|pid:none) Agrobacterium tumefaciens str. ... 189 2e-46
CP000628_2413(CP000628|pid:none) Agrobacterium radiobacter K84 c... 189 2e-46
CP000250_1199(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 188 2e-46
BX640510_9(BX640510|pid:none) Magnetospirillum gryphiswaldense, ... 188 3e-46
CU459003_2602(CU459003|pid:none) Magnetospirillum gryphiswaldens... 188 3e-46
AE017321_770(AE017321|pid:none) Wolbachia endosymbiont strain TR... 186 2e-45
CP001391_930(CP001391|pid:none) Wolbachia sp. wRi, complete geno... 184 3e-45
AE017196_956(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 184 3e-45
(P51131) RecName: Full=Cytochrome b/c1; Contains: RecName: Ful... 184 6e-45
CP000301_916(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 183 8e-45
AM999887_734(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 183 8e-45
AY810050_1(AY810050|pid:none) Schistosoma japonicum SJCHGC04186 ... 181 3e-44
AM494944_6(AM494944|pid:none) Leishmania braziliensis chromosome... 181 3e-44
(P23135) RecName: Full=Cytochrome c1; Flags: Precursor; &CCQF1R... 181 3e-44
CT005246_7(CT005246|pid:none) Leishmania major strain Friedlin, ... 180 9e-44
AM502225_43(AM502225|pid:none) Leishmania infantum chromosome 7. 179 1e-43
CP000356_1331(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 179 1e-43
AY805120_1(AY805120|pid:none) Ornithogalum virens clone 3OvF39 p... 176 9e-43
CP001280_3696(CP001280|pid:none) Methylocella silvestris BL2, co... 176 2e-42
CP000943_6453(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 173 8e-42
CP001001_449(CP001001|pid:none) Methylobacterium radiotolerans J... 173 1e-41
CP001349_7219(CP001349|pid:none) Methylobacterium nodulans ORS 2... 172 2e-41
CP000157_2729(CP000157|pid:none) Erythrobacter litoralis HTCC259... 169 2e-40
BT052414_1(BT052414|pid:none) Medicago truncatula clone MTYFD_FE... 167 4e-40
AK073125_1(AK073125|pid:none) Oryza sativa Japonica Group cDNA c... 167 4e-40
A59369(A59369) ubiquinol-cytochrome-c reductase (EC 1.10.2.2) cy... 167 6e-40
CP001016_155(CP001016|pid:none) Beijerinckia indica subsp. indic... 159 2e-37
CP001298_2636(CP001298|pid:none) Methylobacterium chloromethanic... 152 2e-35
CP000158_348(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 150 9e-35
(P81379) RecName: Full=Cytochrome c1; Flags: Precursor; &JQ0347... 147 6e-34
CP000009_546(CP000009|pid:none) Gluconobacter oxydans 621H, comp... 144 4e-33
BT084111_1(BT084111|pid:none) Zea mays full-length cDNA clone ZM... 138 4e-31
AY942535_1(AY942535|pid:none) Saccharomyces cerevisiae strain Y1... 129 7e-30
CP001029_2438(CP001029|pid:none) Methylobacterium populi BJ001, ... 127 7e-28
CP000031_264(CP000031|pid:none) Ruegeria pomeroyi DSS-3, complet... 121 4e-26
CP000471_353(CP000471|pid:none) Magnetococcus sp. MC-1, complete... 110 6e-23
CP000377_2811(CP000377|pid:none) Silicibacter sp. TM1040, comple... 110 8e-23
(Q02760) RecName: Full=Cytochrome c1; Flags: Precursor; &S13870... 108 4e-22
CP001150_2792(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 107 5e-22
CP000822_1222(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 107 5e-22
CP000362_529(CP000362|pid:none) Roseobacter denitrificans OCh 11... 107 9e-22
(P13627) RecName: Full=Cytochrome c1; Flags: Precursor; &C29413... 106 2e-21
CR925678_526(CR925678|pid:none) Ehrlichia ruminantium str. Welge... 98 4e-19
S65505_1(S65505|pid:none) cytochrome c1 {5' region} [Crithidia f... 90 2e-16
S65506_1(S65506|pid:none) cytochrome c1 {5' region} [Bodo caudat... 87 1e-15
CR925678_525(CR925678|pid:none) Ehrlichia ruminantium str. Welge... 86 2e-15
AY090551_1(AY090551|pid:none) Deschampsia antarctica clone Dacor... 75 3e-12
AE016825_4006(AE016825|pid:none) Chromobacterium violaceum ATCC ... 66 2e-09
AC138464_14(AC138464|pid:none) Medicago truncatula clone mth2-29... 65 3e-09
AM743169_1519(AM743169|pid:none) Stenotrophomonas maltophilia K2... 65 5e-09
AM286690_580(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 64 7e-09
CP000270_3979(CP000270|pid:none) Burkholderia xenovorans LB400 c... 63 2e-08
AE017282_1853(AE017282|pid:none) Methylococcus capsulatus str. B... 63 2e-08
CP001050_2205(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945... 62 3e-08
AM421808_1861(AM421808|pid:none) Neisseria meningitidis serogrou... 62 3e-08
AE004969_1866(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, ... 62 3e-08
CP000323_1578(CP000323|pid:none) Psychrobacter cryohalolentis K5... 62 3e-08
CP000469_597(CP000469|pid:none) Shewanella sp. ANA-3, complete g... 62 3e-08
CP000444_3401(CP000444|pid:none) Shewanella sp. MR-7, complete g... 62 3e-08
CP000503_665(CP000503|pid:none) Shewanella sp. W3-18-1, complete... 60 1e-07
CP000302_3178(CP000302|pid:none) Shewanella denitrificans OS217,... 60 1e-07
AE014299_601(AE014299|pid:none) Shewanella oneidensis MR-1, comp... 60 1e-07
CP001252_3639(CP001252|pid:none) Shewanella baltica OS223, compl... 60 2e-07
CP000563_556(CP000563|pid:none) Shewanella baltica OS155, comple... 60 2e-07
CP000606_571(CP000606|pid:none) Shewanella loihica PV-4, complet... 59 3e-07
CP000821_801(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 59 3e-07
CP000116_1831(CP000116|pid:none) Thiobacillus denitrificans ATCC... 59 3e-07
CP000713_786(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 58 5e-07
CP000961_4119(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 58 5e-07
CP000681_3250(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 58 6e-07
CP001154_2870(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 57 8e-07
AM747720_335(AM747720|pid:none) Burkholderia cenocepacia J2315 c... 57 1e-06
CP000931_3593(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 55 3e-06
CR555306_635(CR555306|pid:none) Azoarcus sp. EbN1 complete genome. 55 3e-06
CP000151_360(CP000151|pid:none) Burkholderia sp. 383 chromosome ... 55 3e-06
CP000090_3069(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 55 4e-06
CP000851_3518(CP000851|pid:none) Shewanella pealeana ATCC 700345... 54 7e-06
CP000352_3214(CP000352|pid:none) Ralstonia metallidurans CH34, c... 54 7e-06
CP000086_2919(CP000086|pid:none) Burkholderia thailandensis E264... 54 9e-06
CP001068_3159(CP001068|pid:none) Ralstonia pickettii 12J chromos... 54 1e-05
AP009385_2851(AP009385|pid:none) Burkholderia multivorans ATCC 1... 53 2e-05
CP000967_1859(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 53 2e-05
CP000447_3279(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 53 2e-05
AE008923_2414(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 53 2e-05
AM039952_2632(AM039952|pid:none) Xanthomonas campestris pv. vesi... 53 2e-05
AE008922_2281(AE008922|pid:none) Xanthomonas campestris pv. camp... 52 3e-05
AE016795_566(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 52 3e-05
CP001013_928(CP001013|pid:none) Leptothrix cholodnii SP-6, compl... 52 3e-05
CP000941_1762(CP000941|pid:none) Xylella fastidiosa M12, complet... 50 1e-04
CP000546_1777(CP000546|pid:none) Burkholderia mallei NCTC 10229 ... 49 2e-04
CP000010_2356(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 49 2e-04
AP009247_10(AP009247|pid:none) Candidatus Vesicomyosocius okutan... 49 2e-04
CR628337_2642(CR628337|pid:none) Legionella pneumophila str. Len... 49 4e-04
CP000644_303(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 48 5e-04
AE009442_1701(AE009442|pid:none) Xylella fastidiosa Temecula1, c... 48 5e-04
FM954972_384(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 48 7e-04
AL954747_811(AL954747|pid:none) Nitrosomonas europaea ATCC 19718... 47 9e-04
CT573326_4188(CT573326|pid:none) Pseudomonas entomophila str. L4... 47 0.001
AE003849_907(AE003849|pid:none) Xylella fastidiosa 9a5c, complet... 47 0.001
CP000510_2706(CP000510|pid:none) Psychromonas ingrahamii 37, com... 47 0.001
CP000884_5483(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 47 0.001
AM181176_823(AM181176|pid:none) Pseudomonas fluorescens SBW25 co... 47 0.001
CP000655_126(CP000655|pid:none) Polynucleobacter necessarius sub... 46 0.002
AE017354_2653(AE017354|pid:none) Legionella pneumophila subsp. p... 46 0.003
CP000675_2881(CP000675|pid:none) Legionella pneumophila str. Cor... 46 0.003
CR628336_2763(CR628336|pid:none) Legionella pneumophila str. Par... 46 0.003
CR954246_2462(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 46 0.003
AE015451_1309(AE015451|pid:none) Pseudomonas putida KT2440 compl... 44 0.007
CP000926_4500(CP000926|pid:none) Pseudomonas putida GB-1, comple... 44 0.010
CP000094_4685(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 43 0.016
CP000304_1054(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 43 0.021
CP000076_5006(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 42 0.047
CP000103_997(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 42 0.047
AE017340_417(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 41 0.062
AE004091_4428(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 41 0.081
CP000744_4941(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 41 0.081
CR378673_170(CR378673|pid:none) Photobacterium profundum SS9; se... 40 0.14
BX640436_100(BX640436|pid:none) Bordetella parapertussis strain ... 40 0.18
AY876892_1(AY876892|pid:none) Xylella fastidiosa clone ALS-6 Pet... 39 0.23
AY876888_1(AY876888|pid:none) Xylella fastidiosa clone Dixon Pet... 39 0.23
AM902716_120(AM902716|pid:none) Bordetella petrii strain DSM 128... 39 0.31
CP000153_1911(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 39 0.31
BX640411_274(BX640411|pid:none) Bordetella pertussis strain Toha... 39 0.31
AP009179_210(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic D... 38 0.52
AY876890_1(AY876890|pid:none) Xylella fastidiosa clone ALS-2 Pet... 38 0.52
CP001217_1533(CP001217|pid:none) Helicobacter pylori P12, comple... 38 0.68
AB281426_3(AB281426|pid:none) Helicobacter pylori petA, petB, pe... 37 0.89
AY876873_1(AY876873|pid:none) Xylella fastidiosa clone Temecula ... 37 1.2
AX055102_1(AX055102|pid:none) Sequence 9 from Patent WO0073502. ... 37 1.2
DQ443426_1(DQ443426|pid:none) Bombyx mori hepatoma-derived growt... 37 1.2
EU496708_1(EU496708|pid:none) Xylella fastidiosa clone CO1 PetC ... 37 1.5
AY876882_1(AY876882|pid:none) Xylella fastidiosa clone Ann-1 Pet... 36 2.6
AL451085_22(AL451085|pid:none) Human DNA sequence from clone RP1... 36 2.6
AY876885_1(AY876885|pid:none) Xylella fastidiosa clone Cathedral... 36 2.6
(Q8NFF5) RecName: Full=FAD synthetase; EC=2.7.7.2; AltN... 36 2.6
AK090542_1(AK090542|pid:none) Homo sapiens cDNA FLJ33223 fis, cl... 36 2.6
CP000091_893(CP000091|pid:none) Ralstonia eutropha JMP134 chromo... 36 2.6
Z70265_1(Z70265|pid:none) Caenorhabditis elegans Cosmid C05A9, c... 35 4.4
T18937(T18937)hypothetical protein C05A9.3 - Caenorhabditis eleg... 35 4.4
AB385229_1(AB385229|pid:none) Synthetic construct DNA, clone: pF... 35 5.8
(Q6PJG2) RecName: Full=Uncharacterized protein C14orf43; 35 5.8
BC025330_1(BC025330|pid:none) Homo sapiens chromosome 14 open re... 35 5.8
AK127785_1(AK127785|pid:none) Homo sapiens cDNA FLJ45886 fis, cl... 35 5.8
BC006511_1(BC006511|pid:none) Homo sapiens chromosome 14 open re... 35 5.8
BC009202_1(BC009202|pid:none) Homo sapiens chromosome 14 open re... 34 7.5
CP000814_1126(CP000814|pid:none) Campylobacter jejuni subsp. jej... 34 9.9
EU960760_1(EU960760|pid:none) Zea mays clone 228371 hypothetical... 34 9.9
AL111168_1118(AL111168|pid:none) Campylobacter jejuni subsp. jej... 34 9.9
CP000025_1276(CP000025|pid:none) Campylobacter jejuni RM1221, co... 34 9.9
CP000768_447(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 34 9.9

>BC082790_1(BC082790|pid:none) Mus musculus cytochrome c-1, mRNA
(cDNA clone IMAGE:30243293), partial cds.
Length = 318

Score = 284 bits (727), Expect = 3e-75
Identities = 136/232 (58%), Positives = 177/232 (76%), Gaps = 1/232 (0%)
Frame = +3

Query: 168 PHTHGNIVSHGNHMITQPIRRGHQVYTQVCSTCHSLNLISYRHLANVAYTPEELKAMAAD 347
P +H ++S +H IRRG QVY QVCS+CHS++ ++YRHL V YT EE KA+A +
Sbjct: 88 PWSHRGLLSSLDHT---SIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEEEAKALAEE 144

Query: 348 TTVMDGPDSEGDMFERKGQVTDFHPKPYPNSNAARFANNGALPPDLSLVIKARGAHEDYV 527
V DGP+ +G+MF R G+++D+ PKPYPN AAR ANNGALPPDLS +++AR EDYV
Sbjct: 145 VEVQDGPNDDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYV 204

Query: 528 FSLLTGYCEPPAGVRVVGGQYFNPYFPGTKIAMAPPLADGMVEYDDGTDNSMSQMAKDVS 707
FSLLTGYCEPP GV + G YFNPYFPG I MAPP+ ++EYDDGT +MSQ+AKDV+
Sbjct: 205 FSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYTEVLEYDDGTPATMSQVAKDVA 264

Query: 708 TFLCWASEPEHDDRKKLGMKVLLGVSIIALPLFY-WKRLKWSVIKTRKISFK 860
TFL WASEPEHD RK++G+K+LL + ++ LPL Y KR KWSV+K+RK++++
Sbjct: 265 TFLRWASEPEHDHRKRMGLKMLLMMGLL-LPLTYAMKRHKWSVLKSRKLAYR 315

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,679,078,461
Number of extensions: 35030580
Number of successful extensions: 95458
Number of sequences better than 10.0: 226
Number of HSP's gapped: 94873
Number of HSP's successfully gapped: 246
Length of query: 354
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 225
Effective length of database: 627,614,014
Effective search space: 141213153150
Effective search space used: 141213153150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.91 gvh: 0.37 alm: 0.27 top: 0.90 tms: 0.07 mit: 0.43 mip: 0.11
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for Contig-U10237-1 is cyt

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0