Contig-U10229-1
Contig ID Contig-U10229-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10229-1 (Contig-U10229-1Q) /CSM_Contig/Contig-U10229-1Q.Seq.d
GCCTACTGGAAAAATAAAATAATAATTAAAATAAAAGAATGATTAGAATT
GGTTCAAATTTAATTAAACAAAGTATTAAAAACACAAATAAAAGTGGTAT
TTCAAGATTTTTTACAACAGGATCAAATAATAGTACCAATTATAAACCAG
AATCATGTGTTAAAGAAGAACCAAAAGGTAAGAGTGTTAATGTCGAAGAT
TTAAAAGACCAAGAGATTATTGCATTAGTTGACAAGGGTGAAATCCAACC
ACATAATTTGGAAACTAGACTTCCAAATAACTTTCAAAGAGCAGTTCACA
TTAGAAGAAAATTATTAGCAAGAGATCTTCAAAAGGAACATCAAAGAGCA
CTTCACGCACAAGCAGTTGTTGCAGCAGCAGAGAAAGCAGCAACCAGCGG
TGAAGATCCATCAAGCATTCAACCAGTTGTCCCACCAACATCAAATTTAG
ATTTTGAAGGTTCATTAACCAACTTACCAGTTGATCATTTCGATTACACC
AAAGTTTTAGGTGCCTGTTGTGAAAATGTAATTGGTTACATTCCAATTCC
AGTTGGTGTTGCAGGTCCAATCCTTTTAGATGGTAAATTAGTTTCAATTC
CAATGGCAACCACTGAAGGTTGTTTAGTTGCATCAACTCATAGAGGTGCT
AAAGCCATCACTAAATCTGGTGGTGCTAAAACTGTACTCTTACAAAGCGG
TATGACTCGTGCACCAGTTTGTCGTTTACCATCATCCATTCGTGCTGGTG
AACTTAAACAATGGATTGAAAATCAAGAGAACTTTTATCAAGTTGCCTCT
GCATTCAACTCTACAAGTAGATTCGCTCGTTTAAAGAGTATTAAAGTTGT
GATTGCAGGTAGACTCGTTTACCTTCGTTTCAAATCTTCCACTGGTGATG
CTATGGGTATGAATATGGTTAGCAAAGGTGTTGAAAAAAGCCCTCGAAGT
CATCACTGAATACTTCCCAGAGATGGAAGTTCTCTCATTGAGTGGTAATG
TTTGTACTGATAAGAAAACCATCATCAATCAATTGGTTAGAAGGTCGTGG
TAAGAGTGTAGTCGCCGAAGCTGTCATCTCTGGTGATATCGTTAGAGATG
TACTTAAAACCACAGTCGAAGCTTTAGTATCACTCAACATTGATAAGAAT
TTAATTGGTTCCGCTATGGCTGGTTCCATTGGTGGTTTCAATGCTCACGC
TTCAAACATTGTCACTGCTCTCTACATTGCCACTGGTCAAGATCCAGCTC
AAAATGTTGAATCTTCAAATTGTATTACCCTCATGGAAAGTATCAATGGT
GGTAAAGATCTTTACATCTCTGTCACTATGCCATCTATTGAAGTTGGTAC
TGTTGGTGGTGGTACACATTTACCAGCTCAATCCGCTTGTCTCGATCTCT
TAAAGATTCGTGGTGCCAATCTCGAACGTCCAGGTGCAAACTCTGAACAA
TTAGCTCGTGTCGTTGCCGCCGCTGTGCTCTCTGGTGAATTATCACTTAT
GAGTGCTCTCGCCGCTGGCCATTTAGTACGTTCTCACTTGAAACATAATC
GTAAAACTGAAGCTCCTGCTCCACAAGCTGATACAATTTCGATGACTCAT
AATTTACCACATTCTGATTAAAAAAAAA

Gap no gap
Contig length 1628
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7044074
End point 7042454
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 8
Link to clone list U10229
List of clone(s)

est1=VFO128F,1,540
est2=VFC592F,78,647
est3=SLE695E,267,1617
est4=VFA835F,285,919
est5=VFA752F,316,860
est6=VFA835Z,886,1592
est7=VFA752Z,982,1592
est8=VSF849F,1184,1629
Translated Amino Acid sequence
llek*nnn*NKRMIRIGSNLIKQSIKNTNKSGISRFFTTGSNNSTNYKPESCVKEEPKGK
SVNVEDLKDQEIIALVDKGEIQPHNLETRLPNNFQRAVHIRRKLLARDLQKEHQRALHAQ
AVVAAAEKAATSGEDPSSIQPVVPPTSNLDFEGSLTNLPVDHFDYTKVLGACCENVIGYI
PIPVGVAGPILLDGKLVSIPMATTEGCLVASTHRGAKAITKSGGAKTVLLQSGMTRAPVC
RLPSSIRAGELKQWIENQENFYQVASAFNSTSRFARLKSIKVVIAGRLVYLRFKSSTGDA
MGMNMVSKGVEKSPRSHH*ilprdgssliew*cly**enhhqsig*kvvvrv*spklssl
vislemylkpqskl*yhstliri*lvplwlvplvvsmltlqtlsllstlplvkiqlkmln
lqivlpswkvsmvvkiftslslchllklvllvvvhiyqlnplvsis*rfvvpisnvqvqt
lnn*lvslpplcslvnyhl*vlsplai*yvlt*niivklklllhkliqfr*liiyhilik
kk


Translated Amino Acid sequence (All Frames)
Frame A:
aywknkiiikike*lelvqi*lnkvlktqikvvfqdflqqdqiivpiinqnhvlkknqkv
rvlmski*ktkrllh*ltrvksnhiiwkldfqitfkeqftleeny*qeifkrnikehfth
kqllqqqrkqqpavkihqafnqlshqhqi*ilkvh*ptyqliisitpkf*vpvvkm*lvt
fqfqlvlqvqsf*mvn*fqfqwqplkvv*lhqlievlkpslnlvvlklysykav*lvhqf
vvyhhpfvlvnlnnglkikrtfiklplhstlqvdslv*rvlkl*lqvdsftfvsnlplvm
lwv*iwlakvlkkaleviteyfpemevlslsgnvctdkktiinqlvrrsw*ecsrrschl
w*yr*rct*nhsrsfsitqh**efnwfrygwfhwwfqcsrfkhchcslhchwsrssskc*
ifklyyphgkyqww*rslhlchyaiy*swycwwwytftssirlsrslkdswcqsrtsrck
l*tisscrcrrcalw*iityecsrrwpfstfslet*s*n*sscsts*ynfdds*fttf*l
kk


Frame B:
ptgkik**lk*knd*nwfkfn*tky*khk*kwyfkifynrik**yql*trimc*rrtkr*
ec*crrfkrprdycis*qg*nptt*fgn*tsk*lsksssh*kkiiskrsskgtskstsrt
ssccssressnqr*rsikhstscptnikfrf*rfinqlts*sfrlhqsfrcll*kcnwlh
snsswccrsnpfrw*isfnsngnh*rlfscins*rc*shh*iwwc*nctltkrydsctsl
sftiihscw*t*tmd*ksrellssclciqlyk*irsfkey*scdcr*trlpsfqifhw*c
ygyeyg*qrc*kkpsksslntsqrwkfsh*vvmfvlirkpssinwlegrgksvvaeavis
gdivrdvlkttvealvslnidknligsamagsiggfnahasnivtalyiatgqdpaqnve
ssncitlmesinggkdlyisvtmpsievgtvgggthlpaqsacldllkirganlerpgan
seqlarvvaaavlsgelslmsalaaghlvrshlkhnrkteapapqadtismthnlphsd*
kk


Frame C:
llek*nnn*NKRMIRIGSNLIKQSIKNTNKSGISRFFTTGSNNSTNYKPESCVKEEPKGK
SVNVEDLKDQEIIALVDKGEIQPHNLETRLPNNFQRAVHIRRKLLARDLQKEHQRALHAQ
AVVAAAEKAATSGEDPSSIQPVVPPTSNLDFEGSLTNLPVDHFDYTKVLGACCENVIGYI
PIPVGVAGPILLDGKLVSIPMATTEGCLVASTHRGAKAITKSGGAKTVLLQSGMTRAPVC
RLPSSIRAGELKQWIENQENFYQVASAFNSTSRFARLKSIKVVIAGRLVYLRFKSSTGDA
MGMNMVSKGVEKSPRSHH*ilprdgssliew*cly**enhhqsig*kvvvrv*spklssl
vislemylkpqskl*yhstliri*lvplwlvplvvsmltlqtlsllstlplvkiqlkmln
lqivlpswkvsmvvkiftslslchllklvllvvvhiyqlnplvsis*rfvvpisnvqvqt
lnn*lvslpplcslvnyhl*vlsplai*yvlt*niivklklllhkliqfr*liiyhilik
kk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10229-1 (Contig-U10229-1Q)
/CSM_Contig/Contig-U10229-1Q.Seq.d
(1628 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10229-1 (Contig-U10229-1Q) /CSM_Contig/Conti... 3138 0.0
Contig-U11848-1 (Contig-U11848-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U13411-1 (Contig-U13411-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U12406-1 (Contig-U12406-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U12071-1 (Contig-U12071-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U11689-1 (Contig-U11689-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U10422-1 (Contig-U10422-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U10218-1 (Contig-U10218-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U09059-1 (Contig-U09059-1Q) /CSM_Contig/Conti... 36 0.12

>Contig-U10229-1 (Contig-U10229-1Q) /CSM_Contig/Contig-U10229-1Q.Seq.d
Length = 1628

Score = 3138 bits (1583), Expect = 0.0
Identities = 1583/1583 (100%)
Strand = Plus / Plus


Query: 37 gaatgattagaattggttcaaatttaattaaacaaagtattaaaaacacaaataaaagtg 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 gaatgattagaattggttcaaatttaattaaacaaagtattaaaaacacaaataaaagtg 96


Query: 97 gtatttcaagattttttacaacaggatcaaataatagtaccaattataaaccagaatcat 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gtatttcaagattttttacaacaggatcaaataatagtaccaattataaaccagaatcat 156


Query: 157 gtgttaaagaagaaccaaaaggtaagagtgttaatgtcgaagatttaaaagaccaagaga 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gtgttaaagaagaaccaaaaggtaagagtgttaatgtcgaagatttaaaagaccaagaga 216


Query: 217 ttattgcattagttgacaagggtgaaatccaaccacataatttggaaactagacttccaa 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttattgcattagttgacaagggtgaaatccaaccacataatttggaaactagacttccaa 276


Query: 277 ataactttcaaagagcagttcacattagaagaaaattattagcaagagatcttcaaaagg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ataactttcaaagagcagttcacattagaagaaaattattagcaagagatcttcaaaagg 336


Query: 337 aacatcaaagagcacttcacgcacaagcagttgttgcagcagcagagaaagcagcaacca 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aacatcaaagagcacttcacgcacaagcagttgttgcagcagcagagaaagcagcaacca 396


Query: 397 gcggtgaagatccatcaagcattcaaccagttgtcccaccaacatcaaatttagattttg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcggtgaagatccatcaagcattcaaccagttgtcccaccaacatcaaatttagattttg 456


Query: 457 aaggttcattaaccaacttaccagttgatcatttcgattacaccaaagttttaggtgcct 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaggttcattaaccaacttaccagttgatcatttcgattacaccaaagttttaggtgcct 516


Query: 517 gttgtgaaaatgtaattggttacattccaattccagttggtgttgcaggtccaatccttt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gttgtgaaaatgtaattggttacattccaattccagttggtgttgcaggtccaatccttt 576


Query: 577 tagatggtaaattagtttcaattccaatggcaaccactgaaggttgtttagttgcatcaa 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tagatggtaaattagtttcaattccaatggcaaccactgaaggttgtttagttgcatcaa 636


Query: 637 ctcatagaggtgctaaagccatcactaaatctggtggtgctaaaactgtactcttacaaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctcatagaggtgctaaagccatcactaaatctggtggtgctaaaactgtactcttacaaa 696


Query: 697 gcggtatgactcgtgcaccagtttgtcgtttaccatcatccattcgtgctggtgaactta 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gcggtatgactcgtgcaccagtttgtcgtttaccatcatccattcgtgctggtgaactta 756


Query: 757 aacaatggattgaaaatcaagagaacttttatcaagttgcctctgcattcaactctacaa 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aacaatggattgaaaatcaagagaacttttatcaagttgcctctgcattcaactctacaa 816


Query: 817 gtagattcgctcgtttaaagagtattaaagttgtgattgcaggtagactcgtttaccttc 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gtagattcgctcgtttaaagagtattaaagttgtgattgcaggtagactcgtttaccttc 876


Query: 877 gtttcaaatcttccactggtgatgctatgggtatgaatatggttagcaaaggtgttgaaa 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gtttcaaatcttccactggtgatgctatgggtatgaatatggttagcaaaggtgttgaaa 936


Query: 937 aaagccctcgaagtcatcactgaatacttcccagagatggaagttctctcattgagtggt 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 aaagccctcgaagtcatcactgaatacttcccagagatggaagttctctcattgagtggt 996


Query: 997 aatgtttgtactgataagaaaaccatcatcaatcaattggttagaaggtcgtggtaagag 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 aatgtttgtactgataagaaaaccatcatcaatcaattggttagaaggtcgtggtaagag 1056


Query: 1057 tgtagtcgccgaagctgtcatctctggtgatatcgttagagatgtacttaaaaccacagt 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tgtagtcgccgaagctgtcatctctggtgatatcgttagagatgtacttaaaaccacagt 1116


Query: 1117 cgaagctttagtatcactcaacattgataagaatttaattggttccgctatggctggttc 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 cgaagctttagtatcactcaacattgataagaatttaattggttccgctatggctggttc 1176


Query: 1177 cattggtggtttcaatgctcacgcttcaaacattgtcactgctctctacattgccactgg 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 cattggtggtttcaatgctcacgcttcaaacattgtcactgctctctacattgccactgg 1236


Query: 1237 tcaagatccagctcaaaatgttgaatcttcaaattgtattaccctcatggaaagtatcaa 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 tcaagatccagctcaaaatgttgaatcttcaaattgtattaccctcatggaaagtatcaa 1296


Query: 1297 tggtggtaaagatctttacatctctgtcactatgccatctattgaagttggtactgttgg 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 tggtggtaaagatctttacatctctgtcactatgccatctattgaagttggtactgttgg 1356


Query: 1357 tggtggtacacatttaccagctcaatccgcttgtctcgatctcttaaagattcgtggtgc 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 tggtggtacacatttaccagctcaatccgcttgtctcgatctcttaaagattcgtggtgc 1416


Query: 1417 caatctcgaacgtccaggtgcaaactctgaacaattagctcgtgtcgttgccgccgctgt 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 caatctcgaacgtccaggtgcaaactctgaacaattagctcgtgtcgttgccgccgctgt 1476


Query: 1477 gctctctggtgaattatcacttatgagtgctctcgccgctggccatttagtacgttctca 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 gctctctggtgaattatcacttatgagtgctctcgccgctggccatttagtacgttctca 1536


Query: 1537 cttgaaacataatcgtaaaactgaagctcctgctccacaagctgatacaatttcgatgac 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 cttgaaacataatcgtaaaactgaagctcctgctccacaagctgatacaatttcgatgac 1596


Query: 1597 tcataatttaccacattctgatt 1619
|||||||||||||||||||||||
Sbjct: 1597 tcataatttaccacattctgatt 1619


>Contig-U11848-1 (Contig-U11848-1Q) /CSM_Contig/Contig-U11848-1Q.Seq.d
Length = 1226

Score = 38.2 bits (19), Expect = 0.029
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 262 aaactagacttccaaataa 280
|||||||||||||||||||
Sbjct: 1149 aaactagacttccaaataa 1167


>Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Contig-U13948-1Q.Seq.d
Length = 1253

Score = 36.2 bits (18), Expect = 0.12
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 1251 aaaatgttgaatcttcaaattg 1272
||||| ||||||||||||||||
Sbjct: 1183 aaaattttgaatcttcaaattg 1204


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,708
Number of Sequences: 6905
Number of extensions: 14708
Number of successful extensions: 1525
Number of sequences better than 10.0: 168
length of query: 1628
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1612
effective length of database: 5,564,391
effective search space: 8969798292
effective search space used: 8969798292
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U10229-1 (Contig-U10229-1Q) /CSM_Contig/Contig-U10229-1Q.Seq.d
(1628 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(L19350) Dictyostelium discoideum hydroxymethylglutaryl CoA ... 1518 0.0 3
(AU061580) Dictyostelium discoideum slug cDNA, clone SLE695. 1332 0.0 2
(BJ429085) Dictyostelium discoideum cDNA clone:ddv2f10, 3' e... 1291 0.0 3
(BJ410913) Dictyostelium discoideum cDNA clone:ddv2f10, 5' e... 1203 0.0 2
(AU034924) Dictyostelium discoideum slug cDNA, clone SLE695. 1197 0.0 3
(BJ412062) Dictyostelium discoideum cDNA clone:ddv6g23, 5' e... 1114 0.0 1
(BJ410983) Dictyostelium discoideum cDNA clone:ddv2h13, 5' e... 1045 0.0 2
(BJ429169) Dictyostelium discoideum cDNA clone:ddv2h13, 3' e... 1039 0.0 3
(BJ417070) Dictyostelium discoideum cDNA clone:ddv29g07, 5' ... 928 0.0 1
(AU265887) Dictyostelium discoideum vegetative cDNA clone:VS... 864 0.0 1
(L19349) Dictyostelium discoideum hydroxymethylglutaryl CoA ... 111 1e-82 7
(BJ402039) Dictyostelium discoideum cDNA clone:dds20b11, 3' ... 111 4e-53 3
(BJ401401) Dictyostelium discoideum cDNA clone:dds23j05, 3' ... 111 4e-53 3
(AU039322) Dictyostelium discoideum slug cDNA, clone SLH555. 111 4e-53 3
(BJ431050) Dictyostelium discoideum cDNA clone:ddv9p13, 3' e... 111 4e-53 3
(BJ428501) Dictyostelium discoideum cDNA clone:ddv12n05, 3' ... 111 2e-52 3
(AU061818) Dictyostelium discoideum slug cDNA, clone SLG218. 84 4e-43 3
(E17177) Candida utilis HMG-CoA reductase gene. 68 2e-38 7
(E17178) Candida utilis hmg1 gene for HMG-CoA reductase. 68 1e-36 7
(AB012603) Candida utilis HMG mRNA for HMG-CoA reductase, co... 68 5e-36 7
(EG667675) RCRC238TP Castor bean cDNA library from roots, 1.... 72 2e-29 4
(EG685710) RCRB027TO Castor bean cDNA library from roots, 1.... 72 2e-29 4
(EG685738) RCRB044TO Castor bean cDNA library from roots, 1.... 72 3e-29 4
(EG684936) RCRAW11TO Castor bean cDNA library from roots, 1.... 72 3e-29 4
(EG669561) RCRCD52TO Castor bean cDNA library from roots, 1.... 72 3e-29 4
(AL423475) T7 end of clone AZ0AA008G01 of library AZ0AA from... 62 4e-27 5
(EG682967) RCRAL07TO Castor bean cDNA library from roots, 1.... 72 7e-27 4
(DY895293) CeleSEQ15085 Cunninghamella elegans pBluescript (... 54 2e-25 6
(FE261662) CAZO2146.rev CAZO Naegleria gruberi Flagellate St... 66 4e-24 5
(FE261663) CAZO2146.fwd CAZO Naegleria gruberi Flagellate St... 66 5e-24 5
(FE244360) CAPG8154.rev CAPG Naegleria gruberi amoeba stage ... 66 6e-24 5
(FE252001) CAPH3776.rev CAPH Naegleria gruberi amoeba stage ... 66 6e-24 5
(FE239992) CAPG5636.rev CAPG Naegleria gruberi amoeba stage ... 66 6e-24 5
(FE238168) CAPG4721.rev CAPG Naegleria gruberi amoeba stage ... 66 7e-24 5
(BJ413453) Dictyostelium discoideum cDNA clone:ddv15j18, 5' ... 74 8e-24 3
(DJ210159) Method for identification of useful proteins deri... 50 1e-23 6
(EG674977) RCRD836TP Castor bean cDNA library from roots, 1.... 66 3e-23 5
(AY692800) Saccharomyces cerevisiae clone FLH158328.01X YLR4... 50 8e-23 6
(EA376700) Sequence 25523 from patent US 7314974. 50 8e-23 6
(M22255) Yeast HMG-CoA reductase (HGM2) gene, complete cds. 50 1e-22 6
(I15189) Sequence 5 from patent US 5460949. 50 1e-22 6
(CZ288222) cp57a08.r Candida parapsilosis Random Genomic Lib... 84 2e-22 3
(EV487679) 125C05 Cotton Lambda Zap Express Library Gossypiu... 74 4e-22 3
(CR380958) Candida glabrata strain CBS138 chromosome L compl... 54 4e-22 14
(DR455341) CM033C03 Cotton Lambda Zap Express Library Gossyp... 74 4e-22 3
(EU302817) Medicago truncatula 3-hydroxy-3-methylglutaryl co... 78 4e-22 5
(CR382136) Debaryomyces hansenii chromosome D of strain CBS7... 54 4e-21 14
(EG671879) RCRCQ72TO Castor bean cDNA library from roots, 1.... 72 9e-21 3
(EG674632) RCRD648TO Castor bean cDNA library from roots, 1.... 72 1e-20 3
(EG671880) RCRCQ72TP Castor bean cDNA library from roots, 1.... 72 1e-20 3
(EG666669) RCRBW70TO Castor bean cDNA library from roots, 1.... 72 1e-20 3
(EG672824) RCRCW10TO Castor bean cDNA library from roots, 1.... 72 1e-20 3
(EE257364) RFAAF34TH Castor bean cDNA library from flowers,8... 72 1e-20 3
(EG680796) RCRE524TO Castor bean cDNA library from roots, 1.... 72 1e-20 3
(EG666237) RCRBU12TO Castor bean cDNA library from roots, 1.... 72 1e-20 3
(EG679430) RCRDX88TO Castor bean cDNA library from roots, 1.... 72 2e-20 3
(AL395949) T7 end of clone AR0AA027C03 of library AR0AA from... 46 4e-20 6
(EU302816) Medicago truncatula 3-hydroxy-3-methylglutaryl co... 66 3e-19 4
(FE245516) CAPG8920.rev CAPG Naegleria gruberi amoeba stage ... 66 3e-19 4
(FE245517) CAPG8920.fwd CAPG Naegleria gruberi amoeba stage ... 66 4e-19 4
(DY893762) CeleSEQ13191 Cunninghamella elegans pBluescript (... 54 4e-19 7
(U22382) Saccharomyces cerevisiae chromosome XII cosmid 9324. 50 6e-19 6
(DI095701) METHOD FOR PRODUCING CAROTENOIDS OR THEIR PRECURS... 58 4e-18 4
(DI095374) METHOD FOR THE GENETIC MODIFICATION OF ORGANISMS ... 58 4e-18 4
(DD399714) Method for producing carotenoids or their precurs... 58 4e-18 4
(DD360075) Method for the genetic modification of organisms ... 58 4e-18 4
(CQ890490) Sequence 75 from Patent WO2004063359. 58 4e-18 4
(CQ887794) Sequence 75 from Patent WO2004063358. 58 4e-18 4
(BQ157419) NF104F03IR1F1031 Irradiated Medicago truncatula c... 78 4e-18 3
(CX549362) MHAM13B_C08_T3_054.seq MHAM2 Medicago truncatula/... 78 4e-18 3
(CX532890) s13dNF46E02MJ007_272062 Methyl Jasmonate-Elicited... 78 5e-18 3
(BQ155316) NF079B06IR1F1057 Irradiated Medicago truncatula c... 78 5e-18 3
(CX531680) s13dNF80H01MJ012_257305 Methyl Jasmonate-Elicited... 78 5e-18 3
(CX528975) s13dNF26A11MJ081_244010 Methyl Jasmonate-Elicited... 78 6e-18 3
(AL405735) T7 end of clone AU0AA006A10 of library AU0AA from... 42 6e-18 5
(CX531734) s13dNF81G04MJ024_257410 Methyl Jasmonate-Elicited... 78 6e-18 3
(BQ155947) NF087E07IR1F1055 Irradiated Medicago truncatula c... 78 7e-18 3
(FE252002) CAPH3776.fwd CAPH Naegleria gruberi amoeba stage ... 60 9e-18 5
(BG585361) EST487125 MHAM Medicago truncatula/Glomus versifo... 78 1e-17 3
(BF649659) NF083E04EC1F1033 Elicited cell culture Medicago t... 78 2e-17 3
(EY478191) METBB29TF JCVI-MT3 Medicago truncatula cDNA 5', m... 78 3e-17 4
(FG809151) UCRVU04_CCNI10824_b1 Cowpea 524B Mixed Tissue and... 50 6e-17 4
(X68652) R.sativus mRNA for HMG-C0A reductase (clone cRS8). 50 7e-17 5
(FG905250) UCRVU08_CCNS3901_b1 Cowpea IT97K-461-4 Mixed Tiss... 50 8e-17 4
(DJ134223) Method for identification of useful proteins deri... 50 1e-16 6
(EV254770) MTYCD14TF JCVI-MT1 Medicago truncatula cDNA 5', m... 78 1e-16 2
(BG453563) NF097H05LF1F1045 Developing leaf Medicago truncat... 78 2e-16 2
(BG452805) NF081F11LF1F1092 Developing leaf Medicago truncat... 78 2e-16 2
(BG457078) NF095C06PL1F1040 Phosphate starved leaf Medicago ... 78 2e-16 2
(CX531395) s13dNF30E06MJ040_256741 Methyl Jasmonate-Elicited... 78 2e-16 2
(BF650114) NF088A08EC1F1055 Elicited cell culture Medicago t... 78 2e-16 2
(CX533728) s13dNF0LC12MJ086_320740 Methyl Jasmonate-Elicited... 78 2e-16 2
(CX532444) s13dNF61H06MJ048_271178 Methyl Jasmonate-Elicited... 78 2e-16 2
(AW585683) EST317306 MHAM Medicago truncatula/Glomus versifo... 78 2e-16 2
(BM814056) EST592149 BNIR Medicago truncatula/Meloidogyne in... 78 2e-16 2
(AW574022) EST316613 GVN Medicago truncatula cDNA clone pGVN... 78 2e-16 2
(CL312076) mth2-124H08_T7 Medicago truncatula BAC end sequen... 78 2e-16 2
(CL312077) mth2-124H15_T7 Medicago truncatula BAC end sequen... 78 2e-16 2
(BG584977) EST486739 MHAM Medicago truncatula/Glomus versifo... 78 2e-16 2
(BE203139) EST403161 KV1 Medicago truncatula cDNA clone pKV1... 78 2e-16 2

>(L19350) Dictyostelium discoideum hydroxymethylglutaryl CoA
reductase (hmgB) mRNA, 3' end.
Length = 1527

Score = 1518 bits (766), Expect(3) = 0.0
Identities = 766/766 (100%)
Strand = Plus / Plus


Query: 173 aaaaggtaagagtgttaatgtcgaagatttaaaagaccaagagattattgcattagttga 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaggtaagagtgttaatgtcgaagatttaaaagaccaagagattattgcattagttga 60


Query: 233 caagggtgaaatccaaccacataatttggaaactagacttccaaataactttcaaagagc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagggtgaaatccaaccacataatttggaaactagacttccaaataactttcaaagagc 120


Query: 293 agttcacattagaagaaaattattagcaagagatcttcaaaaggaacatcaaagagcact 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttcacattagaagaaaattattagcaagagatcttcaaaaggaacatcaaagagcact 180


Query: 353 tcacgcacaagcagttgttgcagcagcagagaaagcagcaaccagcggtgaagatccatc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcacgcacaagcagttgttgcagcagcagagaaagcagcaaccagcggtgaagatccatc 240


Query: 413 aagcattcaaccagttgtcccaccaacatcaaatttagattttgaaggttcattaaccaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagcattcaaccagttgtcccaccaacatcaaatttagattttgaaggttcattaaccaa 300


Query: 473 cttaccagttgatcatttcgattacaccaaagttttaggtgcctgttgtgaaaatgtaat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttaccagttgatcatttcgattacaccaaagttttaggtgcctgttgtgaaaatgtaat 360


Query: 533 tggttacattccaattccagttggtgttgcaggtccaatccttttagatggtaaattagt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggttacattccaattccagttggtgttgcaggtccaatccttttagatggtaaattagt 420


Query: 593 ttcaattccaatggcaaccactgaaggttgtttagttgcatcaactcatagaggtgctaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcaattccaatggcaaccactgaaggttgtttagttgcatcaactcatagaggtgctaa 480


Query: 653 agccatcactaaatctggtggtgctaaaactgtactcttacaaagcggtatgactcgtgc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agccatcactaaatctggtggtgctaaaactgtactcttacaaagcggtatgactcgtgc 540


Query: 713 accagtttgtcgtttaccatcatccattcgtgctggtgaacttaaacaatggattgaaaa 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 accagtttgtcgtttaccatcatccattcgtgctggtgaacttaaacaatggattgaaaa 600


Query: 773 tcaagagaacttttatcaagttgcctctgcattcaactctacaagtagattcgctcgttt 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcaagagaacttttatcaagttgcctctgcattcaactctacaagtagattcgctcgttt 660


Query: 833 aaagagtattaaagttgtgattgcaggtagactcgtttaccttcgtttcaaatcttccac 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaagagtattaaagttgtgattgcaggtagactcgtttaccttcgtttcaaatcttccac 720


Query: 893 tggtgatgctatgggtatgaatatggttagcaaaggtgttgaaaaa 938
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tggtgatgctatgggtatgaatatggttagcaaaggtgttgaaaaa 766

Score = 1197 bits (604), Expect(3) = 0.0
Identities = 604/604 (100%)
Strand = Plus / Plus


Query: 1016 aaaccatcatcaatcaattggttagaaggtcgtggtaagagtgtagtcgccgaagctgtc 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aaaccatcatcaatcaattggttagaaggtcgtggtaagagtgtagtcgccgaagctgtc 901


Query: 1076 atctctggtgatatcgttagagatgtacttaaaaccacagtcgaagctttagtatcactc 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 atctctggtgatatcgttagagatgtacttaaaaccacagtcgaagctttagtatcactc 961


Query: 1136 aacattgataagaatttaattggttccgctatggctggttccattggtggtttcaatgct 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 aacattgataagaatttaattggttccgctatggctggttccattggtggtttcaatgct 1021


Query: 1196 cacgcttcaaacattgtcactgctctctacattgccactggtcaagatccagctcaaaat 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 cacgcttcaaacattgtcactgctctctacattgccactggtcaagatccagctcaaaat 1081


Query: 1256 gttgaatcttcaaattgtattaccctcatggaaagtatcaatggtggtaaagatctttac 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 gttgaatcttcaaattgtattaccctcatggaaagtatcaatggtggtaaagatctttac 1141


Query: 1316 atctctgtcactatgccatctattgaagttggtactgttggtggtggtacacatttacca 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 atctctgtcactatgccatctattgaagttggtactgttggtggtggtacacatttacca 1201


Query: 1376 gctcaatccgcttgtctcgatctcttaaagattcgtggtgccaatctcgaacgtccaggt 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 gctcaatccgcttgtctcgatctcttaaagattcgtggtgccaatctcgaacgtccaggt 1261


Query: 1436 gcaaactctgaacaattagctcgtgtcgttgccgccgctgtgctctctggtgaattatca 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1262 gcaaactctgaacaattagctcgtgtcgttgccgccgctgtgctctctggtgaattatca 1321


Query: 1496 cttatgagtgctctcgccgctggccatttagtacgttctcacttgaaacataatcgtaaa 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 cttatgagtgctctcgccgctggccatttagtacgttctcacttgaaacataatcgtaaa 1381


Query: 1556 actgaagctcctgctccacaagctgatacaatttcgatgactcataatttaccacattct 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1382 actgaagctcctgctccacaagctgatacaatttcgatgactcataatttaccacattct 1441


Query: 1616 gatt 1619
||||
Sbjct: 1442 gatt 1445

Score = 165 bits (83), Expect(3) = 0.0
Identities = 83/83 (100%)
Strand = Plus / Plus


Query: 935 aaaaagccctcgaagtcatcactgaatacttcccagagatggaagttctctcattgagtg 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aaaaagccctcgaagtcatcactgaatacttcccagagatggaagttctctcattgagtg 821


Query: 995 gtaatgtttgtactgataagaaa 1017
|||||||||||||||||||||||
Sbjct: 822 gtaatgtttgtactgataagaaa 844

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,593,968,954
Number of extensions: 87064110
Number of successful extensions: 6579860
Number of sequences better than 10.0: 1039
Length of query: 1628
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1604
Effective length of database: 97,308,875,965
Effective search space: 156083437047860
Effective search space used: 156083437047860
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10229-1 (Contig-U10229-1Q) /CSM_Contig/Contig-U10229-1Q.Seq.d
(1628 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P34136) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 560 0.0
L19350_1(L19350|pid:none) Dictyostelium discoideum hydroxymethyl... 470 0.0
(P34135) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 275 e-137
(Q12649) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 268 e-137
AE017346_472(AE017346|pid:none) Cryptococcus neoformans var. neo... 265 e-133
AJ568024_1(AJ568024|pid:none) Rhizomucor miehei hmgr gene for hy... 262 e-131
T03382(T03382) probable hydroxymethylglutaryl-CoA reductase (NAD... 264 e-131
(O64966) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 275 e-130
AB294691_1(AB294691|pid:none) Hevea brasiliensis HbHMGR mRNA for... 271 e-130
AY488113_1(AY488113|pid:none) Arabidopsis thaliana 3-hydroxy-3-m... 266 e-129
(P14891) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 266 e-129
BT034177_1(BT034177|pid:none) Zea mays full-length cDNA clone ZM... 264 e-129
(Q01237) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 250 e-128
(P00347) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 249 e-128
BC091631_1(BC091631|pid:none) Xenopus laevis cDNA clone IMAGE:71... 250 e-128
A23586(A23586)hydroxymethylglutaryl-CoA reductase (EC 1.1.1.88) ... 249 e-127
(Q9XHL5) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 265 e-127
BC059873_1(BC059873|pid:none) Mus musculus 3-hydroxy-3-methylglu... 250 e-127
EU302814_1(EU302814|pid:none) Medicago truncatula 3-hydroxy-3-me... 266 e-127
BX511209_2(BX511209|pid:none) Zebrafish DNA sequence from clone ... 252 e-127
BC117622_1(BC117622|pid:none) Danio rerio 3-hydroxy-3-methylglut... 252 e-127
S30338(S30338)hydroxymethylglutaryl-CoA reductase (NADPH2) (EC 1... 262 e-127
S29623(S29623) hydroxymethylglutaryl-CoA reductase (NADPH2) (EC ... 261 e-127
(P16393) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 253 e-126
(O24594) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 264 e-126
(Q03163) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 261 e-126
AC151425_29(AC151425|pid:none) Medicago truncatula clone mth2-4l... 265 e-126
AY424801_1(AY424801|pid:none) Dicentrarchus labrax HMG-CoA reduc... 251 e-126
AY292877_1(AY292877|pid:none) Homarus americanus mandibular orga... 239 e-126
(Q01559) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 264 e-126
AY292876_1(AY292876|pid:none) Homarus americanus mandibular orga... 239 e-126
(Q0DY59) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 263 e-126
EU302816_1(EU302816|pid:none) Medicago truncatula 3-hydroxy-3-me... 265 e-126
EF134407_1(EF134407|pid:none) Phaedon cochleariae 3-hydroxy-3-me... 263 e-125
AB041031_1(AB041031|pid:none) Solanum tuberosum HMG2 gene for 3-... 265 e-125
AF315713_1(AF315713|pid:none) Malus x domestica 3-hydroxy-3-meth... 263 e-125
AX128209_1(AX128209|pid:none) Sequence 23 from Patent WO0131027. 261 e-125
AY692800_1(AY692800|pid:none) Saccharomyces cerevisiae clone FLH... 261 e-125
(P12684) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 261 e-125
AY706757_1(AY706757|pid:none) Hevea brasiliensis 3-hydroxy-3-met... 261 e-125
(A2X8W3) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 261 e-125
AF071750_1(AF071750|pid:none) Ips paraconfusus 3-hydroxy-3-methy... 259 e-125
EF090602_1(EF090602|pid:none) Atractylodes lancea 3-hydroxy-3-me... 256 e-125
M29249_1(M29249|pid:none) Rat 3-hydroxy-3-methylglutaryl coenzym... 248 e-125
AB294692_1(AB294692|pid:none) Hevea brasiliensis HbHMGR mRNA for... 258 e-125
M74798_1(M74798|pid:none) Hevea brasiliensis 3-hydroxy-3-methylg... 257 e-125
AF162705_1(AF162705|pid:none) Anthonomus grandis 3-hydroxy-3-met... 247 e-125
CR382136_396(CR382136|pid:none) Debaryomyces hansenii strain CBS... 248 e-125
(Q41438) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 261 e-125
U43711_1(U43711|pid:none) Morus alba 3-hydroxy-3-methylglutaryl-... 259 e-125
(P12683) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 257 e-124
AF389879_1(AF389879|pid:none) Andrographis paniculata 3-hydroxy-... 259 e-124
AX814366_1(AX814366|pid:none) Sequence 3 from Patent WO03064652.... 257 e-124
AX128213_1(AX128213|pid:none) Sequence 27 from Patent WO0131027. 257 e-124
(P48020) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 260 e-124
AY039230_1(AY039230|pid:none) Malus x domestica 3-hydroxy-3-meth... 263 e-124
EF062866_1(EF062866|pid:none) Cistus creticus 3-hydroxy-3-methyl... 270 e-124
CR380958_493(CR380958|pid:none) Candida glabrata strain CBS138 c... 260 e-124
AB027188_1(AB027188|pid:none) Gentiana lutea GenHMG1 mRNA for 3-... 261 e-124
DQ347962_1(DQ347962|pid:none) Picrorhiza kurrooa 3-hydroxy-3-met... 263 e-124
CR382122_193(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 256 e-124
AF034760_1(AF034760|pid:none) Tagetes erecta 3-hydroxy-3-methylg... 264 e-123
EU680958_1(EU680958|pid:none) Salvia miltiorrhiza 3-hydroxy-3-me... 265 e-123
CU928168_704(CU928168|pid:none) Kluyveromyces thermotolerans str... 257 e-123
EU780785_1(EU780785|pid:none) Pyrus pyrifolia 3-hydroxy-3-methyl... 261 e-123
EF666140_1(EF666140|pid:none) Antirrhinum majus 3-hydroxy-3-meth... 261 e-123
S59946(S59946)hydroxymethylglutaryl-CoA reductase (NADPH2) (EC 1... 257 e-123
AF303583_1(AF303583|pid:none) Pisum sativum 3-hydroxy-3-methylgl... 259 e-123
U14625_1(U14625|pid:none) Artemisia annua 3-hydroxy-3-methylglut... 265 e-123
U14624_1(U14624|pid:none) Artemisia annua 3-hydroxy-3-methylglut... 265 e-122
FM992688_348(FM992688|pid:none) Candida dubliniensis CD36 chromo... 248 e-122
(P20715) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 246 e-122
DQ098012_1(DQ098012|pid:none) Michelia chapensis 3-hydroxy-methy... 263 e-122
AP007166_186(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 256 e-122
EU780784_1(EU780784|pid:none) Pyrus pyrifolia 3-hydroxy-3-methyl... 264 e-122
(P43256) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 248 e-121
AM920433_523(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 252 e-121
BX649605_1(BX649605|pid:none) Aspergillus fumigatus BAC pilot pr... 243 e-120
AK292892_1(AK292892|pid:none) Homo sapiens cDNA FLJ78605 complet... 249 e-120
(P04035) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 249 e-120
AK296499_1(AK296499|pid:none) Homo sapiens cDNA FLJ59310 complet... 249 e-120
(Q29512) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 245 e-120
EF536067_1(EF536067|pid:none) Hortaea werneckii 3-hydroxy-3-meth... 250 e-120
EF536068_1(EF536068|pid:none) Hortaea werneckii mitochondrial 3-... 249 e-119
AM117500_1(AM117500|pid:none) Hypocrea lixii hmgR gene for 3-hyd... 241 e-119
L28995_1(L28995|pid:none) Oryza sativa 3-hydroxy-3-methylglutary... 254 e-119
U72146_1(U72146|pid:none) Camptotheca acuminata 3-hydroxy-3-meth... 252 e-119
(Q1W675) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 249 e-119
CU633438_523(CU633438|pid:none) Podospora anserina genomic DNA c... 247 e-119
(Q0C8L9) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 241 e-118
AY277740_1(AY277740|pid:none) Taxus x media 3-hydroxy-3-methylgl... 268 e-118
AB173119_1(AB173119|pid:none) Macaca fascicularis brain cDNA clo... 249 e-118
AF141925_4(AF141925|pid:none) Aspergillus terreus lovastatin bio... 241 e-118
AB072893_7(AB072893|pid:none) Penicillium citrinum ML-236B (comp... 239 e-117
AY741133_1(AY741133|pid:none) Ginkgo biloba 3-hydroxy-3-methylgl... 256 e-117
DQ176595_4(DQ176595|pid:none) Monascus pilosus monacolin K biosy... 241 e-116
DQ532119_1(DQ532119|pid:none) Neotyphodium lolii HMG CoA reducta... 238 e-115
AF155593_1(AF155593|pid:none) Leishmania major 3-hydroxy-3-methy... 236 e-114
DQ453140_1(DQ453140|pid:none) Arnebia euchroma hydroxymethylglut... 217 e-113
EU296534_1(EU296534|pid:none) Cyclocarya paliurus 3-hydroxy-3-me... 261 e-113
AP007174_267(AP007174|pid:none) Aspergillus oryzae RIB40 genomic... 239 e-112
AB274990_1(AB274990|pid:none) Bombyx mori HMG-R_Bm mRNA for 3-hy... 209 e-111
AM494967_318(AM494967|pid:none) Leishmania braziliensis chromoso... 239 e-109
(P14773) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 223 e-108
FJ667605_1(FJ667605|pid:none) Linum usitatissimum 3-hydroxy-3-me... 262 e-107
AK079302_1(AK079302|pid:none) Mus musculus adult male urinary bl... 248 e-106
AF142473_1(AF142473|pid:none) Artemisia annua HMG-CoA reductase ... 196 e-101
BT042510_1(BT042510|pid:none) Zea mays full-length cDNA clone ZM... 263 3e-95
T15979(T15979)hypothetical protein F08F8.2 - Caenorhabditis eleg... 191 4e-92
U28991_12(U28991|pid:none) Caenorhabditis elegans cosmid F08F8, ... 191 4e-92
AF034761_1(AF034761|pid:none) Tagetes erecta 3-hydroxy-3-methylg... 191 5e-91
BC033692_1(BC033692|pid:none) Homo sapiens 3-hydroxy-3-methylglu... 249 9e-90
FN314070_1(FN314070|pid:none) Schistosoma japonicum isolate Anhu... 169 3e-89
EF134409_1(EF134409|pid:none) Chrysomela populi 3-hydroxy-3-meth... 190 7e-89
AY739957_1(AY739957|pid:none) Salvia miltiorrhiza HMGR (HMGR) mR... 265 5e-87
EF134408_1(EF134408|pid:none) Gastrophysa viridula 3-hydroxy-3-m... 191 2e-85
AE009950_1848(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c... 179 1e-81
(Q9V1R3) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 179 1e-81
AY995181_1(AY995181|pid:none) Datura innoxia HMG CoA reductase m... 262 4e-81
(O59469) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 178 9e-80
CP000855_401(CP000855|pid:none) Thermococcus onnurineus NA1, com... 178 5e-79
FN318133_1(FN318133|pid:none) Schistosoma japonicum isolate Anhu... 165 2e-78
AE009439_355(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 176 5e-78
CP000660_765(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351... 164 4e-77
T51306(T51306) hydroxymethylglutaryl-CoA reductase (NADPH2) (EC ... 171 5e-77
(Q9YAS4) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 181 1e-75
CP001399_1542(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 169 1e-75
CP001402_1546(CP001402|pid:none) Sulfolobus islandicus M.16.4, c... 169 2e-75
EF584751_1(EF584751|pid:none) Houttuynia cordata 3-hydroxy-3-met... 266 2e-75
CP000561_1070(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 157 6e-75
CP001400_1441(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 169 7e-75
BA000023_1474(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 163 2e-73
CP000816_475(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 159 7e-73
CP000504_806(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 152 7e-73
CP000852_403(CP000852|pid:none) Caldivirga maquilingensis IC-167... 161 5e-72
CP000077_1264(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 156 1e-71
AK299655_1(AK299655|pid:none) Homo sapiens cDNA FLJ55363 complet... 249 2e-71
CP000682_1627(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 170 4e-71
FJ870558_1(FJ870558|pid:none) Bacopa monnieri 3-hydroxy-3-methyl... 250 6e-71
DQ017377_1(DQ017377|pid:none) Dioscorea zingiberensis 3-hydroxy-... 251 1e-70
(O26662) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 172 1e-70
AM180088_2286(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 169 2e-70
CP000742_1084(CP000742|pid:none) Methanococcus vannielii SB, com... 158 2e-69
CP000780_137(CP000780|pid:none) Candidatus Methanoregula boonei ... 166 3e-69
CP001365_1991(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 166 1e-68
CP000102_562(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 169 2e-68
EF133501_1(EF133501|pid:none) Ligularia fischeri 3-hydroxy-3-met... 262 2e-68
CP000562_2353(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 175 3e-68
CP000559_1638(CP000559|pid:none) Methanocorpusculum labreanum Z,... 168 3e-68
X94308_1(X94308|pid:none) S.manihoticola HMGR gene. 191 6e-68
AE004437_1431(AE004437|pid:none) Halobacterium sp. NRC-1, comple... 160 2e-67
(Q59468) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 163 3e-67
CP000745_1079(CP000745|pid:none) Methanococcus maripaludis C7, c... 151 1e-66
AM114193_1839(AM114193|pid:none) Uncultured methanogenic archaeo... 164 2e-66
AY735151_1(AY735151|pid:none) Fundulus heteroclitus HMG CoA-redu... 255 3e-66
(Q58116) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 152 4e-64
AF123438_1(AF123438|pid:none) Haloarcula hispanica 3-hydroxy-3-m... 139 2e-59
FJ913887_1(FJ913887|pid:none) Ageratina adenophora 3-hydroxy-3-m... 147 3e-59
AE003853_708(AE003853|pid:none) Vibrio cholerae O1 biovar eltor ... 128 1e-54
BA000038_625(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chr... 132 1e-53
AE016796_110(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 132 1e-53
EU400217_1(EU400217|pid:none) Bupleurum chinense 3-hydroxy-3-met... 187 6e-53
DQ153210_1(DQ153210|pid:none) Bupleurum falcatum 3-hydroxy-3-met... 187 2e-52
CP001236_576(CP001236|pid:none) Vibrio cholerae O395 chromosome ... 127 2e-52
CP000626_660(CP000626|pid:none) Vibrio cholerae O395 chromosome ... 127 2e-52
BA000032_968(BA000032|pid:none) Vibrio parahaemolyticus RIMD 221... 125 3e-52
CP001133_963(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ... 130 5e-52
DQ350144_1(DQ350144|pid:none) Gossypium barbadense 3-hydroxy-3-m... 184 8e-52
AY862319_1(AY862319|pid:none) Piper colubrinum hydroxy-methylglu... 130 3e-51
BT058953_1(BT058953|pid:none) Salmo salar clone ssal-rgf-515-333... 203 2e-50
BT056033_1(BT056033|pid:none) Zea mays full-length cDNA clone ZM... 202 2e-50
FM178380_253(FM178380|pid:none) Aliivibrio salmonicida LFI1238 c... 123 4e-50
AL590449_173(AL590449|pid:none) chromosome X of strain GB-M1 of ... 108 3e-49
AE016828_528(AE016828|pid:none) Coxiella burnetii RSA 493, compl... 135 1e-48
CP000890_635(CP000890|pid:none) Coxiella burnetii RSA 331, compl... 135 1e-48
AJ431696_1(AJ431696|pid:none) Paracoccus zeaxanthinifaciens mvaA... 127 2e-47
CP000109_1716(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 129 3e-47
PQ0763(PQ0763)hydroxymethylglutaryl-CoA reductase (NADPH2) (EC 1... 165 5e-47
CP000473_5659(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 110 6e-46
DQ350145_1(DQ350145|pid:none) Gossypium barbadense 3-hydroxy-3-m... 184 8e-45
U97683_1(U97683|pid:none) Glycine max 3-hydroxy-3-methylglutaryl... 184 1e-44
AJ311626_1(AJ311626|pid:none) Hortaea werneckii partial hmgR1 ge... 174 5e-44
AY228453_1(AY228453|pid:none) Solanum xanthocarpum hydroxy methy... 115 8e-44
CS072807_1(CS072807|pid:none) Sequence 17 from Patent WO20010442... 169 1e-43
CP001103_3480(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 103 1e-43
AJ299210_1(AJ299210|pid:none) Thermococcus litoralis partial mva... 114 2e-43
DQ400696_1(DQ400696|pid:none) Arnebia euchroma 3-hydroxy-3-methy... 147 5e-42
CP000159_2363(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 107 2e-41
AB212624_13(AB212624|pid:none) Streptomyces sp. KO-3988 furaquin... 134 2e-41
AB183750_9(AB183750|pid:none) Streptomyces sp. KO-3988 viguiepin... 134 3e-41
FM211050_12(FM211050|pid:none) Photorhabdus asymbiotica subsp. a... 104 1e-40
AB113568_6(AB113568|pid:none) Actinoplanes sp. A40644 mevalonate... 137 7e-40
BX571874_48(BX571874|pid:none) Photorhabdus luminescens subsp. l... 100 2e-39
AE016825_1806(AE016825|pid:none) Chromobacterium violaceum ATCC ... 100 1e-38
X74783_1(X74783|pid:none) L.erythrorhizon mRNA for 3-hydroxy-3-m... 138 4e-37
AP007164_560(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 93 5e-35
AK069555_1(AK069555|pid:none) Oryza sativa Japonica Group cDNA c... 148 5e-34
AJ299209_1(AJ299209|pid:none) Thermococcus celer partial mvaA ge... 134 5e-34
A10467_1(A10467|pid:none) Artificial sequence for human HMG-CoA ... 129 1e-33
AM420293_5372(AM420293|pid:none) Saccharopolyspora erythraea NRR... 89 1e-32
DQ246549_1(DQ246549|pid:none) Solanum torvum 3-hydroxy-3-methylg... 141 8e-32
A10464_1(A10464|pid:none) Artificial sequence for human HMG-CoA ... 139 3e-31
AB360395_1(AB360395|pid:none) Solanum melongena SmHMGR1 mRNA for... 138 7e-31
S17345(S17345)hydroxymethylglutaryl-CoA reductase (NADPH2) (EC 1... 132 4e-29
AM270197_25(AM270197|pid:none) Aspergillus niger contig An09c008... 89 4e-29
CP001020_202(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com... 89 1e-28
AE016828_30(AE016828|pid:none) Coxiella burnetii RSA 493, comple... 89 3e-28
CP001019_276(CP001019|pid:none) Coxiella burnetii CbuG_Q212, com... 89 4e-28
S42212(S42212)hydroxymethylglutaryl-CoA reductase (NADPH2) (EC 1... 128 5e-28
S42215(S42215)hydroxymethylglutaryl-CoA reductase (NADPH2) (EC 1... 127 1e-27
AF481793_1(AF481793|pid:none) Streptomyces sp. SMA5 3-hydroxy-3-... 109 1e-27
AF481794_1(AF481794|pid:none) Streptomyces griseus 3-hydroxy-3-m... 107 1e-27
AJ299213_1(AJ299213|pid:none) Pyrodictium occultum partial mvaA ... 117 2e-27
AF481792_1(AF481792|pid:none) Streptomyces sp. SMA64 3-hydroxy-3... 109 7e-27
AF481796_1(AF481796|pid:none) Streptomyces sp. SMA185 3-hydroxy-... 103 2e-26
EF119235_1(EF119235|pid:none) Cyanophora paradoxa cytosolic 3-hy... 121 6e-26
EU821447_1(EU821447|pid:none) Solanum lycopersicum cultivar Corb... 110 1e-22
AJ973242_1(AJ973242|pid:none) Vibrio sp. 12d10 partial mvaA gene... 97 1e-22
EU821457_1(EU821457|pid:none) Solanum corneliomuelleri bio-mater... 109 3e-22
EU821461_1(EU821461|pid:none) Solanum pennellii bio-material CGN... 109 3e-22
DQ229901_1(DQ229901|pid:none) Solanum nigrum 3-hydroxy-3-methyl ... 105 4e-21
AF481795_1(AF481795|pid:none) Nocardia sp. SMA88 3-hydroxy-3-met... 105 4e-21
EF119232_1(EF119232|pid:none) Mesostigma viride cytosolic 3-hydr... 103 1e-20
D63389_1(D63389|pid:none) Cucumis sativus mRNA for 3-hydroxy-3-m... 63 3e-20
AJ973240_1(AJ973240|pid:none) Vibrio sp. 14c08 partial mvaA gene... 102 5e-20
AJ973241_1(AJ973241|pid:none) Vibrio sp. 12c03 partial mvaA gene... 97 2e-18
AJ973239_1(AJ973239|pid:none) Vibrio sp. 12d02 partial mvaA gene... 94 1e-17
CP000733_137(CP000733|pid:none) Coxiella burnetii Dugway 5J108-1... 89 5e-16
AJ973230_1(AJ973230|pid:none) Vibrio sp. 12g06 partial mvaA gene... 88 8e-16
A10461_1(A10461|pid:none) Artificial sequence for human HMG-CoA ... 74 2e-11
DQ675019_1(DQ675019|pid:none) Litchi chinensis 3-hydroxy-3-methy... 72 6e-11
AJ973235_1(AJ973235|pid:none) Vibrio sp. 12F02 partial mvaA gene... 40 6e-07
AF290090_2(AF290090|pid:none) Staphylococcus epidermidis HMG-CoA... 51 1e-04
CP000407_1634(CP000407|pid:none) Streptococcus suis 05ZYH33, com... 51 1e-04
CP000423_1691(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 50 2e-04
AF290088_3(AF290088|pid:none) Staphylococcus haemolyticus HMG-Co... 50 2e-04
BX571856_2576(BX571856|pid:none) Staphylococcus aureus subsp. au... 50 2e-04
DQ489736_238(DQ489736|pid:none) Leuconostoc citreum KM20, comple... 50 2e-04
CP000413_1318(CP000413|pid:none) Lactobacillus gasseri ATCC 3332... 50 2e-04
BA000033_2466(BA000033|pid:none) Staphylococcus aureus subsp. au... 50 2e-04
AP006716_511(AP006716|pid:none) Staphylococcus haemolyticus JCSC... 50 2e-04
AF290086_2(AF290086|pid:none) Staphylococcus aureus HMG-CoA synt... 50 2e-04
AJ938182_2418(AJ938182|pid:none) Staphylococcus aureus RF122 com... 50 3e-04
CP000477_921(CP000477|pid:none) Methanosaeta thermophila PT, com... 50 3e-04
AM295250_1874(AM295250|pid:none) Staphylococcus carnosus subsp. ... 49 4e-04
AE017261_1143(AE017261|pid:none) Picrophilus torridus DSM 9790, ... 49 7e-04
CR954253_855(CR954253|pid:none) Lactobacillus delbrueckii subsp.... 49 7e-04
CP000675_2169(CP000675|pid:none) Legionella pneumophila str. Cor... 48 9e-04
CR628337_2040(CR628337|pid:none) Legionella pneumophila str. Len... 48 9e-04
AL766850_116(AL766850|pid:none) Streptococcus agalactiae NEM316 ... 48 9e-04
AI1177(AI1177) 3-hydroxy-3-methylglutaryl-coenzyme a reductase h... 48 0.001
CP000412_715(CP000412|pid:none) Lactobacillus delbrueckii subsp.... 48 0.001
AF496352_1(AF496352|pid:none) Lactobacillus delbrueckii subsp. l... 48 0.001
AE009948_1279(AE009948|pid:none) Streptococcus agalactiae 2603V/... 47 0.002
AP008934_326(AP008934|pid:none) Staphylococcus saprophyticus sub... 47 0.002
CP001175_1777(CP001175|pid:none) Listeria monocytogenes HCC23, c... 47 0.002
AM491333_10(AM491333|pid:none) Archaeal BJ1 virus V1(partial), V... 47 0.003
CP000505_918(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 46 0.003
AL935253_62(AL935253|pid:none) Lactobacillus plantarum strain WC... 46 0.003
FM242711_822(FM242711|pid:none) Listeria monocytogenes Clip81459... 46 0.004
AE017262_834(AE017262|pid:none) Listeria monocytogenes str. 4b F... 46 0.004
AM114193_2362(AM114193|pid:none) Uncultured methanogenic archaeo... 45 0.006
CP000023_552(CP000023|pid:none) Streptococcus thermophilus LMG 1... 45 0.006
CP000419_492(CP000419|pid:none) Streptococcus thermophilus LMD-9... 45 0.006
BA000011_1193(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 45 0.008
CP000968_556(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 45 0.010
AP008937_181(AP008937|pid:none) Lactobacillus fermentum IFO 3956... 45 0.010
CP000685_1412(CP000685|pid:none) Flavobacterium johnsoniae UW101... 45 0.010
CP000395_695(CP000395|pid:none) Borrelia afzelii PKo, complete g... 44 0.022
CP000233_216(CP000233|pid:none) Lactobacillus salivarius UCC118,... 43 0.029
CP000804_954(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 43 0.029
F72573(F72573)hypothetical protein APE1870 - Aeropyrum pernix (s... 43 0.029
AJ299205_1(AJ299205|pid:none) Archaeoglobus profundus partial mv... 43 0.029
CP000686_419(CP000686|pid:none) Roseiflexus sp. RS-1, complete g... 43 0.038
CP001205_651(CP001205|pid:none) Borrelia burgdorferi ZS7, comple... 43 0.038
AE005176_1570(AE005176|pid:none) Lactococcus lactis subsp. lacti... 43 0.038
CP000884_286(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 43 0.038
AM398681_2277(AM398681|pid:none) Flavobacterium psychrophilum JI... 42 0.049
CP000725_240(CP000725|pid:none) Streptococcus gordonii str. Chal... 42 0.049
AJ973243_1(AJ973243|pid:none) Vibrio harveyi partial mvaA gene f... 42 0.049
CP000013_677(CP000013|pid:none) Borrelia garinii PBi, complete g... 42 0.049
CP000976_657(CP000976|pid:none) Borrelia duttonii Ly, complete g... 42 0.064
CP000422_244(CP000422|pid:none) Pediococcus pentosaceus ATCC 257... 42 0.064
CP000993_646(CP000993|pid:none) Borrelia recurrentis A1, complet... 42 0.064
CP000387_324(CP000387|pid:none) Streptococcus sanguinis SK36, co... 42 0.084
AF247973_1(AF247973|pid:none) Giardia intestinalis 3-hydroxy-3-m... 42 0.084
CP000425_1524(CP000425|pid:none) Lactococcus lactis subsp. cremo... 41 0.14
AM406671_916(AM406671|pid:none) Lactococcus lactis subsp. cremor... 41 0.14
BA000028_224(BA000028|pid:none) Oceanobacillus iheyensis HTE831 ... 40 0.24
AM746676_3013(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 40 0.24
AL445064_80(AL445064|pid:none) Thermoplasma acidophilum complete... 40 0.24
EF507511_1(EF507511|pid:none) Borrelia lonestari clone pBLS1107 ... 40 0.24
CU207366_2929(CU207366|pid:none) Gramella forsetii KT0803 comple... 40 0.24
CP000459_331(CP000459|pid:none) Burkholderia cenocepacia HI2424 ... 39 0.42
(P13702) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A red... 39 0.42
CP000959_823(CP000959|pid:none) Burkholderia cenocepacia MC0-3 c... 39 0.42
AJ299204_1(AJ299204|pid:none) Archaeoglobus veneficus partial mv... 39 0.54
CP000909_231(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 39 0.54
EU016654_19(EU016654|pid:none) Uncultured marine microorganism H... 39 0.71
AF290094_2(AF290094|pid:none) Enterococcus faecium HMG-CoA synth... 38 0.93
CP001337_1098(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 38 1.2
AJ973234_1(AJ973234|pid:none) Vibrio sp. 7a03 partial mvaA gene ... 38 1.2
CR382125_499(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 37 1.6
CP000712_3024(CP000712|pid:none) Pseudomonas putida F1, complete... 37 2.1
EU016616_24(EU016616|pid:none) Uncultured Group I marine crenarc... 37 2.7
AJ299206_1(AJ299206|pid:none) Ferroglobus placidus partial mvaA ... 36 3.5
AE001362_23(AE001362|pid:none) Plasmodium falciparum 3D7 chromos... 36 4.6
AM910994_580(AM910994|pid:none) Plasmodium knowlesi strain H chr... 36 4.6
BA000037_214(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, chr... 36 4.6
CP001096_256(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 35 6.0
AE014188_253(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 35 6.0
CP001140_717(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 35 6.0
CP000435_1262(CP000435|pid:none) Synechococcus sp. CC9311, compl... 35 7.9

>(P34136) RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A
reductase 2; Short=HMG-CoA reductase 2;
EC=1.1.1.34;
Length = 526

Score = 560 bits (1442), Expect(3) = 0.0
Identities = 285/301 (94%), Positives = 286/301 (95%)
Frame = +3

Query: 39 MIRIGSNLIKQSIKNTNKSGISRFFTTGSNNSTNYKPESCVKEEPKGKSVNVEDLKDQEI 218
MIRIGSNLIKQSIKNTNKSGISRFFTTGSNNSTNYKPESCVKEEPKGKSVNVEDLKDQEI
Sbjct: 1 MIRIGSNLIKQSIKNTNKSGISRFFTTGSNNSTNYKPESCVKEEPKGKSVNVEDLKDQEI 60

Query: 219 IALVDKGEIQPHNLETRLPNNFQRAVHIRRKLLARDLQKEHQRXXXXXXXXXXXXXXXTS 398
IALVDKGEIQPHNLETRLPNNFQRAVHIRRKLLARDLQKEHQR TS
Sbjct: 61 IALVDKGEIQPHNLETRLPNNFQRAVHIRRKLLARDLQKEHQRALHAQAVVAAAEKAATS 120

Query: 399 GEDPSSIQPVVPPTSNLDFEGSLTNLPVDHFDYTKVLGACCENVIGYIPIPVGVAGPILL 578
GEDPSSIQPVVPPTSNLDFEGSLTNLPVDHFDYTKVLGACCENVIGYIPIPVGVAGPILL
Sbjct: 121 GEDPSSIQPVVPPTSNLDFEGSLTNLPVDHFDYTKVLGACCENVIGYIPIPVGVAGPILL 180

Query: 579 DGKLVSIPMATTEGCLVASTHRGAKAITKSGGAKTVLLQSGMTRAPVCRLPSSIRAGELK 758
DGKLVSIPMATTEGCLVASTHRGAKAITKSGGAKTVLLQSGMTRAPVCRLPSSIRAGELK
Sbjct: 181 DGKLVSIPMATTEGCLVASTHRGAKAITKSGGAKTVLLQSGMTRAPVCRLPSSIRAGELK 240

Query: 759 QWIENQENFYQVASAFNSTSRFARLKSIKVVIAGRLVYLRFKSSTGDAMGMNMVSKGVEK 938
QWIENQENFYQVASAFNSTSRFARLKSIKVVIAGRLVYLRFKSSTGDAMGMNMVSKGVEK
Sbjct: 241 QWIENQENFYQVASAFNSTSRFARLKSIKVVIAGRLVYLRFKSSTGDAMGMNMVSKGVEK 300

Query: 939 S 941
+
Sbjct: 301 A 301

Score = 391 bits (1005), Expect(3) = 0.0
Identities = 201/202 (99%), Positives = 202/202 (100%)
Frame = +2

Query: 1013 RKPSSINWLEGRGKSVVAEAVISGDIVRDVLKTTVEALVSLNIDKNLIGSAMAGSIGGFN 1192
+KPSSINWLEGRGKSVVAEAVISGDIVRDVLKTTVEALVSLNIDKNLIGSAMAGSIGGFN
Sbjct: 325 KKPSSINWLEGRGKSVVAEAVISGDIVRDVLKTTVEALVSLNIDKNLIGSAMAGSIGGFN 384

Query: 1193 AHASNIVTALYIATGQDPAQNVESSNCITLMESINGGKDLYISVTMPSIEVGTVGGGTHL 1372
AHASNIVTALYIATGQDPAQNVESSNCITLMESINGGKDLYISVTMPSIEVGTVGGGTHL
Sbjct: 385 AHASNIVTALYIATGQDPAQNVESSNCITLMESINGGKDLYISVTMPSIEVGTVGGGTHL 444

Query: 1373 PAQSACLDLLKIRGANLERPGANSEQLARVVAAAVLSGELSLMSALAAGHLVRSHLKHNR 1552
PAQSACLDLLKIRGANLERPGANSEQLARVVAAAVLSGELSLMSALAAGHLVRSHLKHNR
Sbjct: 445 PAQSACLDLLKIRGANLERPGANSEQLARVVAAAVLSGELSLMSALAAGHLVRSHLKHNR 504

Query: 1553 KTEAPAPQADTISMTHNLPHSD 1618
KTEAPAPQADTISMTHNLPHSD
Sbjct: 505 KTEAPAPQADTISMTHNLPHSD 526

Score = 59.7 bits (143), Expect(3) = 0.0
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = +1

Query: 919 LAKVLKKALEVITEYFPEMEVLSLSGNVCTDKK 1017
++K ++KALEVITEYFPEMEVLSLSGNVCTDKK
Sbjct: 294 VSKGVEKALEVITEYFPEMEVLSLSGNVCTDKK 326

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,486,844,278
Number of extensions: 49469596
Number of successful extensions: 137798
Number of sequences better than 10.0: 313
Number of HSP's gapped: 137321
Number of HSP's successfully gapped: 712
Length of query: 542
Length of database: 1,040,966,779
Length adjustment: 134
Effective length of query: 408
Effective length of database: 611,592,589
Effective search space: 249529776312
Effective search space used: 249529776312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.68 gvh: 0.25 alm: 0.30 top: 0.57 tms: 0.07 mit: 0.54 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.07 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: vesicles of secretory system
4.0 %: plasma membrane

>> prediction for Contig-U10229-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 4
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0