Contig-U10212-1 |
Contig ID |
Contig-U10212-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1443 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
8455450 |
End point |
8454015 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
4 |
Number of EST |
6 |
Link to clone list |
U10212 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.18 |
Homology vs DNA |
|
protein update |
2009. 6.27 |
Homology vs Protein |
Query= Contig-U10212-1 (Contig-U10212-1Q) /CSM_Contig/Contig-U10212-1Q.Seq.d (1443 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AC115612_48(AC115612|pid:none) Dictyostelium discoideum chromoso... 844 0.0 AP002043_2(AP002043|pid:none) Arabidopsis thaliana genomic DNA, ... 457 e-127 AY122912_1(AY122912|pid:none) Arabidopsis thaliana unknown prote... 455 e-126 AL161515_7(AL161515|pid:none) Arabidopsis thaliana DNA chromosom... 441 e-122 AK102566_1(AK102566|pid:none) Oryza sativa Japonica Group cDNA c... 416 e-114 (P58813) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 259 1e-67 (O27628) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 257 8e-67 (Q59007) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 255 2e-66 (A8AC98) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 249 2e-64 CP000867_1221(CP000867|pid:none) Methanococcus maripaludis C6, c... 248 5e-64 (Q975P3) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 247 7e-64 (A6VH25) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 241 4e-62 (Q980A0) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 241 6e-62 (A4YIX4) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 240 8e-62 (O57742) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 240 1e-61 CP000855_444(CP000855|pid:none) Thermococcus onnurineus NA1, com... 240 1e-61 CP001404_1030(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 239 2e-61 (Q979H8) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 238 3e-61 (Q5JI21) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 238 3e-61 CP000505_1552(CP000505|pid:none) Thermofilum pendens Hrk 5, comp... 238 5e-61 AM114193_1989(AM114193|pid:none) Uncultured methanogenic archaeo... 237 7e-61 (Q9HL27) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 234 4e-60 (P58814) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 233 2e-59 (Q2NES7) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 228 3e-58 CT005266_230(CT005266|pid:none) Leishmania major strain Friedlin... 228 5e-58 CT573071_873(CT573071|pid:none) Kuenenia stuttgartiensis genome ... 224 8e-57 CP000382_1498(CP000382|pid:none) Clostridium novyi NT, complete ... 223 2e-56 (A3MWR8) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 219 2e-55 (A2SR62) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 216 1e-54 (A3CSK8) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 216 2e-54 (B1Y9H0) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 216 2e-54 AJ621333_1(AJ621333|pid:none) Thermoproteus tenax gpmA gene for ... 200 1e-49 AY458630_9(AY458630|pid:none) Uncultured marine bacterium 106 cl... 191 4e-47 EU964822_1(EU964822|pid:none) Zea mays clone 281814 unknown mRNA. 187 8e-46 AY714845_34(AY714845|pid:none) Uncultured archaeon GZfos27B6 clo... 176 1e-42 AY714860_17(AY714860|pid:none) Uncultured archaeon GZfos34G5 clo... 175 3e-42 CP001147_1619(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 174 7e-42 (Q72GG0) RecName: Full=Probable 2,3-bisphosphoglycerate-independ... 173 1e-41 CP000575_330(CP000575|pid:none) Staphylothermus marinus F1, comp... 172 4e-41 CP000852_332(CP000852|pid:none) Caldivirga maquilingensis IC-167... 171 6e-41 CP000812_275(CP000812|pid:none) Thermotoga lettingae TMO, comple... 169 2e-40 AM114193_978(AM114193|pid:none) Uncultured methanogenic archaeon... 169 2e-40 (Q9X295) RecName: Full=Probable 2,3-bisphosphoglycerate-independ... 169 2e-40 (Q9YBI2) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 169 3e-40 CP000102_465(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 169 3e-40 AJ965256_600(AJ965256|pid:none) Dehalococcoides sp. CBDB1 comple... 168 4e-40 CP001147_1223(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 168 4e-40 (Q12UL5) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 168 5e-40 (A5ILK6) RecName: Full=Probable 2,3-bisphosphoglycerate-independ... 168 5e-40 CP000688_665(CP000688|pid:none) Dehalococcoides sp. BAV1, comple... 168 5e-40 CP000609_1546(CP000609|pid:none) Methanococcus maripaludis C5, c... 166 3e-39 CP000969_1035(CP000969|pid:none) Thermotoga sp. RQ2, complete ge... 165 3e-39 AP009389_1598(AP009389|pid:none) Pelotomaculum thermopropionicum... 164 6e-39 CP000867_831(CP000867|pid:none) Methanococcus maripaludis C6, co... 164 7e-39 (B7IDT4) RecName: Full=Probable 2,3-bisphosphoglycerate-independ... 164 1e-38 CP000027_723(CP000027|pid:none) Dehalococcoides ethenogenes 195,... 162 4e-38 CP000916_964(CP000916|pid:none) Thermotoga neapolitana DSM 4359,... 162 4e-38 CP001146_1632(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 161 5e-38 CP001089_2439(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 160 8e-38 CP001251_7(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, co... 160 8e-38 (P58812) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 160 1e-37 (O66820) RecName: Full=Probable 2,3-bisphosphoglycerate-independ... 160 1e-37 (Q74C57) RecName: Full=Probable 2,3-bisphosphoglycerate-independ... 159 2e-37 CP000493_1150(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 159 2e-37 (A6LMV5) RecName: Full=Probable 2,3-bisphosphoglycerate-independ... 159 2e-37 CP000780_672(CP000780|pid:none) Candidatus Methanoregula boonei ... 159 2e-37 AE015928_2402(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 158 5e-37 CP001322_3040(CP001322|pid:none) Desulfatibacillum alkenivorans ... 158 5e-37 CP000771_714(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 157 7e-37 CP000860_1001(CP000860|pid:none) Candidatus Desulforudis audaxvi... 156 2e-36 CP000879_138(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 156 2e-36 AY714832_5(AY714832|pid:none) Uncultured archaeon GZfos1C11 clon... 156 2e-36 CP001348_2096(CP001348|pid:none) Clostridium cellulolyticum H10,... 155 3e-36 AE008384_1418(AE008384|pid:none) Methanosarcina mazei strain Goe... 152 2e-35 CP001140_335(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 152 3e-35 CR626927_534(CR626927|pid:none) Bacteroides fragilis NCTC 9343, ... 152 4e-35 CP000568_1282(CP000568|pid:none) Clostridium thermocellum ATCC 2... 150 8e-35 (Q46E58) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 150 8e-35 CP000678_153(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 150 1e-34 CP000142_1630(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 149 2e-34 CP000252_133(CP000252|pid:none) Syntrophus aciditrophicus SB, co... 149 3e-34 (A0B6L2) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 149 3e-34 CP000448_1250(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 149 3e-34 CP000742_1102(CP000742|pid:none) Methanococcus vannielii SB, com... 149 3e-34 BX294148_183(BX294148|pid:none) Rhodopirellula baltica SH 1 comp... 147 7e-34 AP010656_658(AP010656|pid:none) Candidatus Azobacteroides pseudo... 147 9e-34 CP000142_907(CP000142|pid:none) Pelobacter carbinolicus DSM 2380... 147 1e-33 CP001390_2736(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 147 1e-33 CP000252_2639(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 146 2e-33 CP000148_1412(CP000148|pid:none) Geobacter metallireducens GS-15... 145 3e-33 CP001114_2500(CP001114|pid:none) Deinococcus deserti VCD115, com... 145 3e-33 AJ965256_1452(AJ965256|pid:none) Dehalococcoides sp. CBDB1 compl... 145 4e-33 CR522870_1731(CR522870|pid:none) Desulfotalea psychrophila LSv54... 145 4e-33 CP000139_1986(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 145 5e-33 CP000027_1574(CP000027|pid:none) Dehalococcoides ethenogenes 195... 144 8e-33 (Q60326) RecName: Full=2,3-bisphosphoglycerate-independent phosp... 142 2e-32 CP000562_700(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 142 3e-32 EU016628_27(EU016628|pid:none) Uncultured Group I marine crenarc... 142 4e-32 CP001124_1860(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 141 7e-32 (Q9RSA0) RecName: Full=Probable 2,3-bisphosphoglycerate-independ... 141 7e-32 CP000698_2343(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 140 1e-31 (Q1IW58) RecName: Full=Probable 2,3-bisphosphoglycerate-independ... 138 6e-31 CP000471_804(CP000471|pid:none) Magnetococcus sp. MC-1, complete... 133 2e-29 AY632421_12(AY632421|pid:none) Streptomyces viridochromogenes PT... 104 9e-21 CP000745_1605(CP000745|pid:none) Methanococcus maripaludis C7, c... 95 7e-18 CP001197_1400(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 90 2e-16 AF146566_1(AF146566|pid:none) Methanococcus maripaludis phosphon... 89 4e-16 BX950229_598(BX950229|pid:none) Methanococcus maripaludis strain... 87 2e-15 AB029917_1(AB029917|pid:none) Streptomyces hygroscopicus orfZZ g... 72 4e-11 CP000742_1449(CP000742|pid:none) Methanococcus vannielii SB, com... 71 9e-11 AM181176_4870(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 40 0.21 CP001047_422(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 37 1.4 CP001279_315(CP001279|pid:none) Nautilia profundicola AmH, compl... 37 1.4 CR380958_343(CR380958|pid:none) Candida glabrata strain CBS138 c... 37 1.4 CP000117_1950(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 36 3.0 CP000539_3284(CP000539|pid:none) Acidovorax sp. JS42, complete g... 36 4.0 A59390(A59390) probable phosphodiesterase I (EC 3.1.4.1) / nucle... 35 6.8 (Q31IN4) RecName: Full=50S ribosomal protein L25; AltName: Full=... 35 6.8 BC089320_1(BC089320|pid:none) Mus musculus ectonucleotide pyroph... 35 6.8 (Q9EQG7) RecName: Full=Ectonucleotide pyrophosphatase/phosphodie... 35 6.8 AF315810_1(AF315810|pid:none) Rhizobium leguminosarum bv. trifol... 35 6.8 AK220510_1(AK220510|pid:none) Mus musculus mRNA for mKIAA4152 pr... 35 6.8 CP001392_2702(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 35 8.9 AE014187_340(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 8.9 AY456035_1(AY456035|pid:none) Gibberella moniliformis putative h... 35 8.9
>AC115612_48(AC115612|pid:none) Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. Length = 449
Score = 844 bits (2181), Expect = 0.0 Identities = 420/443 (94%), Positives = 420/443 (94%) Frame = +1
Query: 40 MVFVMVDGIADTSIPQYERKTTLQVANTPTMDAMSSSGINGVMDPVEPGFACGSDTAHLS 219 MVFVMVDGIADTSIPQYERKTTLQVANTPTMDAMSSSGINGVMDPVEPGFACGSDTAHLS Sbjct: 7 MVFVMVDGIADTSIPQYERKTTLQVANTPTMDAMSSSGINGVMDPVEPGFACGSDTAHLS 66
Query: 220 ILGYDPRKYYRGRGAFESMGAGLDMQPGDIAFKSNFATIDKSSGIVILRRADRNFEHLGP 399 ILGYDPRKYYRGRGAFESMGAGLDMQPGDIAFKSNFATIDKSSGIVILRRADRNFEHLGP Sbjct: 67 ILGYDPRKYYRGRGAFESMGAGLDMQPGDIAFKSNFATIDKSSGIVILRRADRNFEHLGP 126
Query: 400 TLCDYLTGIKLPSFPNYRVDVKYATEHRCGVRVRGPNLTDSITGTDPLKDNLPLLKATPL 579 TLCDYLTGIKLPSFPNYRVDVKYATEHRCGVRVRGPNLTDSITGTDPLKDNLPLLKATPL Sbjct: 127 TLCDYLTGIKLPSFPNYRVDVKYATEHRCGVRVRGPNLTDSITGTDPLKDNLPLLKATPL 186
Query: 580 DINSHDSILTSKIVNELSDEIQKALENHPINIERREKGLPVANVVLLRGCGVCVEAPTFK 759 DINSHDSILTSKIVNELSDEIQKALENHPINIERREKGLPVANVVLLRGCGVCVEAPTFK Sbjct: 187 DINSHDSILTSKIVNELSDEIQKALENHPINIERREKGLPVANVVLLRGCGVCVEAPTFK 246
Query: 760 QKYGMNAFMIAPTCIIAGLGMSVKIDVIESEGGTGDYHTNLQSKADTLLKNILDVDNDKY 939 QKYGMNAFMIAPTCIIAGLGMSVKIDVIESEGGTGDYHTNLQSKADTLLKNILDVDNDKY Sbjct: 247 QKYGMNAFMIAPTCIIAGLGMSVKIDVIESEGGTGDYHTNLQSKADTLLKNILDVDNDKY 306
Query: 940 QFGFLHIKAVDDAGHDKNAPLKIEFLEKIDKMLHFIISQLAIAQNENKGNFTICLTGDHS 1119 QFGFLHIKAVDDAGHDKNAPLKIEFLEKIDKMLHFIISQLAIAQNENKGNFTICLTGDHS Sbjct: 307 QFGFLHIKAVDDAGHDKNAPLKIEFLEKIDKMLHFIISQLAIAQNENKGNFTICLTGDHS 366
Query: 1120 TPVLTGDHSYEPVPFTICKVIEAXXXXXXXXXXXXXXXXXXXXXXXCFSDNVKVFNEIES 1299 TPVLTGDHSYEPVPFTICKVIEA CFSDNVKVFNEIES Sbjct: 367 TPVLTGDHSYEPVPFTICKVIEADKIINKKNDDNNINNNNNSNSSNCFSDNVKVFNEIES 426
Query: 1300 TSGVLGRFPGGQAMNIICQYMNN 1368 TSGVLGRFPGGQAMNIICQYMNN Sbjct: 427 TSGVLGRFPGGQAMNIICQYMNN 449
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 2,042,082,514 Number of extensions: 40406419 Number of successful extensions: 104604 Number of sequences better than 10.0: 125 Number of HSP's gapped: 104222 Number of HSP's successfully gapped: 157 Length of query: 481 Length of database: 1,040,966,779 Length adjustment: 132 Effective length of query: 349 Effective length of database: 618,001,159 Effective search space: 215682404491 Effective search space used: 215682404491 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |