Contig-U10198-1
Contig ID Contig-U10198-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10198-1 (Contig-U10198-1Q) /CSM_Contig/Contig-U10198-1Q.Seq.d
AAACAAAATGGAAACAAATAATGAAATTTCCACAATTTTAGATTTATTCC
CAAATTTAACAATTAAACAAGCAACAGATTGTTTAAAAACTTGTAATAAT
AATATTGAACAAACAATTAATTATTTAGTAGAGAATATTGATATTGTTAC
ATCAGTAAATACAAAAGTTGGTAGTGGTAATATTAAAAGTACTGATGATA
TAATTAATAATTCAACAACCACAACAACAACATTTAAAACTGAAGAAGAT
ATTGAAAATGAAAGATTATTTAAAGAATTTATGGAAAATGAATTAAAACA
ATCAGAAATTAAAAATTCAAGTAAAACTCATTTATGTATGGTTTGTTATT
GTGAATTGCCAATAACCGATTTTTATATCCTAGATGAATGTAATCATAAA
TATTGTAATCTCTGTTTAAACACACATTATACAATGCAAGTACGTAGTGG
ATACAGTGACCTAAAATGCCCAATGCCAACATGCAGATACAAACCGACCT
ATGAAGAAGTCCAACATATTCTATCAAAAGATTATTTTGAAAAGTATGAT
AAAATCTTAGTAAATGTTCATTTAAATAAAGATAAAAACATTCGTTATTG
TCCAGAAATCGATTGCGGTGCTGCAATTATCATGCCATCAGATAATAATA
ATTCAACAACTCAATCTGTAGAATGCTCAAATCAAGAATGTAAATCATCA
TATTGTTTAAATTGCAGAGAGCCATCGCATAGCGGTCTCACCTGTGAGCA
ATATGAAACTGCCAAATTAGAATTAGCAGAGTTAATGGAAATTGAAGAAA
ATCAAATGACCTTCAAGCAAAGATTAATGGAGTTATTCAGTCAAGGTGAT
GCAAATTCCATACTCTATGATAAAACTCCACCAAAAAGAGTAAGAAATAG
ACTTTTCTTTCTCGCCAAAAAATGGGGTAGATATGTCAATACCGATAGAA
TTCACGAATTACAAGTATCAGCATCAACTTTAAAATGGGTTCTTGAAAAT
ACAAAAATATGTCCAACTTGTAAAATTATTATTGAAAAAATTGATGGTTG
TAATAGTATGGATTGTGTTTGTGGTACAAACTTTTGTTTTGGTTGTGGTG
TTAAAAGAACTGAACATACTGCCAAAAGATTCCCATGTTATGATCCATAT
TATTATGATTCTTATTAATAATAAAAAACAATTTTATTTTACAATAAAAA
AAAAA

Gap no gap
Contig length 1205
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3447122
End point 3448316
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 5
Link to clone list U10198
List of clone(s)

est1=SLB478F,1,306
est2=VFK403E,7,1150
est3=VFE324Z,471,1197
est4=VSB844Z,589,1206
est5=SLB478Z,791,1200
Translated Amino Acid sequence
NKMETNNEISTILDLFPNLTIKQATDCLKTCNNNIEQTINYLVENIDIVTSVNTKVGSGN
IKSTDDIINNSTTTTTTFKTEEDIENERLFKEFMENELKQSEIKNSSKTHLCMVCYCELP
ITDFYILDECNHKYCNLCLNTHYTMQVRSGYSDLKCPMPTCRYKPTYEEVQHILSKDYFE
KYDKILVNVHLNKDKNIRYCPEIDCGAAIIMPSDNNNSTTQSVECSNQECKSSYCLNCRE
PSHSGLTCEQYETAKLELAELMEIEENQMTFKQRLMELFSQGDANSILYDKTPPKRVRNR
LFFLAKKWGRYVNTDRIHELQVSASTLKWVLENTKICPTCKIIIEKIDGCNSMDCVCGTN
FCFGCGVKRTEHTAKRFPCYDPYYYDSY***ktilfynkkk


Translated Amino Acid sequence (All Frames)
Frame A:
kqngnk**nfhnfrfipkfnn*tsnrlfknl***y*tnn*lfsrey*ycyiskyksw*w*
y*ky**yn**fnnhnnni*n*rry*k*kii*riygk*iktirn*kfk*nsfmyglll*ia
nnrflypr*m*s*il*slfkhtlynast*wiq*pkmpnanmqiqtdl*rsptysikrlf*
kv**nlskcsfk*r*khsllsrnrlrccnyhair***fnnsicrmlksrm*iiilfklqr
aia*rshl*ai*ncqirisrvngn*rksndlqakingviqsr*ckfhtl**nstkkskk*
tflsrqkmg*icqyr*nsritsisinfkmgs*kyknmsnl*nyy*kn*wl**yglclwyk
llfwlwc*kn*tycqkipml*sill*flliiknnfilq*kk


Frame B:
NKMETNNEISTILDLFPNLTIKQATDCLKTCNNNIEQTINYLVENIDIVTSVNTKVGSGN
IKSTDDIINNSTTTTTTFKTEEDIENERLFKEFMENELKQSEIKNSSKTHLCMVCYCELP
ITDFYILDECNHKYCNLCLNTHYTMQVRSGYSDLKCPMPTCRYKPTYEEVQHILSKDYFE
KYDKILVNVHLNKDKNIRYCPEIDCGAAIIMPSDNNNSTTQSVECSNQECKSSYCLNCRE
PSHSGLTCEQYETAKLELAELMEIEENQMTFKQRLMELFSQGDANSILYDKTPPKRVRNR
LFFLAKKWGRYVNTDRIHELQVSASTLKWVLENTKICPTCKIIIEKIDGCNSMDCVCGTN
FCFGCGVKRTEHTAKRFPCYDPYYYDSY***ktilfynkkk


Frame C:
tkwkqimkfpqf*iysqi*qlnkqqiv*klviiilnkqlii**rilillhq*iqklvvvi
lkvlmi*liiqqpqqqhlklkkilkmkdylknlwkmn*nnqklkiqvkliyvwfvivncq
*pifis*mnviinivisv*thiiqckyvvdtvt*naqcqhadtnrpmkksnifyqkiilk
smiks**mfi*ikiktfvivqksiavlqlschqiiiiqqlnl*naqiknvnhhiv*iaes
hriavspvsnmklpn*n*qs*wklkkik*psskd*wsysvkvmqipysmiklhqke*eid
fsfspkngvdmsipieftnykyqhql*ngflkiqkyvqlvklllkklmvvivwivfvvqt
fvlvvvlkelnilpkdshvmihiimilinnkkqfyftikkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10198-1 (Contig-U10198-1Q)
/CSM_Contig/Contig-U10198-1Q.Seq.d
(1205 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10198-1 (Contig-U10198-1Q) /CSM_Contig/Conti... 2369 0.0
Contig-U14095-1 (Contig-U14095-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U12755-1 (Contig-U12755-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U05843-1 (Contig-U05843-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U05254-1 (Contig-U05254-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U14907-1 (Contig-U14907-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U14137-1 (Contig-U14137-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U14660-1 (Contig-U14660-1Q) /CSM_Contig/Conti... 40 0.005

>Contig-U10198-1 (Contig-U10198-1Q) /CSM_Contig/Contig-U10198-1Q.Seq.d
Length = 1205

Score = 2369 bits (1195), Expect = 0.0
Identities = 1195/1195 (100%)
Strand = Plus / Plus


Query: 1 aaacaaaatggaaacaaataatgaaatttccacaattttagatttattcccaaatttaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacaaaatggaaacaaataatgaaatttccacaattttagatttattcccaaatttaac 60


Query: 61 aattaaacaagcaacagattgtttaaaaacttgtaataataatattgaacaaacaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattaaacaagcaacagattgtttaaaaacttgtaataataatattgaacaaacaattaa 120


Query: 121 ttatttagtagagaatattgatattgttacatcagtaaatacaaaagttggtagtggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttatttagtagagaatattgatattgttacatcagtaaatacaaaagttggtagtggtaa 180


Query: 181 tattaaaagtactgatgatataattaataattcaacaaccacaacaacaacatttaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattaaaagtactgatgatataattaataattcaacaaccacaacaacaacatttaaaac 240


Query: 241 tgaagaagatattgaaaatgaaagattatttaaagaatttatggaaaatgaattaaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaagaagatattgaaaatgaaagattatttaaagaatttatggaaaatgaattaaaaca 300


Query: 301 atcagaaattaaaaattcaagtaaaactcatttatgtatggtttgttattgtgaattgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcagaaattaaaaattcaagtaaaactcatttatgtatggtttgttattgtgaattgcc 360


Query: 361 aataaccgatttttatatcctagatgaatgtaatcataaatattgtaatctctgtttaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aataaccgatttttatatcctagatgaatgtaatcataaatattgtaatctctgtttaaa 420


Query: 421 cacacattatacaatgcaagtacgtagtggatacagtgacctaaaatgcccaatgccaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cacacattatacaatgcaagtacgtagtggatacagtgacctaaaatgcccaatgccaac 480


Query: 481 atgcagatacaaaccgacctatgaagaagtccaacatattctatcaaaagattattttga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgcagatacaaaccgacctatgaagaagtccaacatattctatcaaaagattattttga 540


Query: 541 aaagtatgataaaatcttagtaaatgttcatttaaataaagataaaaacattcgttattg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaagtatgataaaatcttagtaaatgttcatttaaataaagataaaaacattcgttattg 600


Query: 601 tccagaaatcgattgcggtgctgcaattatcatgccatcagataataataattcaacaac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tccagaaatcgattgcggtgctgcaattatcatgccatcagataataataattcaacaac 660


Query: 661 tcaatctgtagaatgctcaaatcaagaatgtaaatcatcatattgtttaaattgcagaga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcaatctgtagaatgctcaaatcaagaatgtaaatcatcatattgtttaaattgcagaga 720


Query: 721 gccatcgcatagcggtctcacctgtgagcaatatgaaactgccaaattagaattagcaga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gccatcgcatagcggtctcacctgtgagcaatatgaaactgccaaattagaattagcaga 780


Query: 781 gttaatggaaattgaagaaaatcaaatgaccttcaagcaaagattaatggagttattcag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gttaatggaaattgaagaaaatcaaatgaccttcaagcaaagattaatggagttattcag 840


Query: 841 tcaaggtgatgcaaattccatactctatgataaaactccaccaaaaagagtaagaaatag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcaaggtgatgcaaattccatactctatgataaaactccaccaaaaagagtaagaaatag 900


Query: 901 acttttctttctcgccaaaaaatggggtagatatgtcaataccgatagaattcacgaatt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 acttttctttctcgccaaaaaatggggtagatatgtcaataccgatagaattcacgaatt 960


Query: 961 acaagtatcagcatcaactttaaaatgggttcttgaaaatacaaaaatatgtccaacttg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 acaagtatcagcatcaactttaaaatgggttcttgaaaatacaaaaatatgtccaacttg 1020


Query: 1021 taaaattattattgaaaaaattgatggttgtaatagtatggattgtgtttgtggtacaaa 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 taaaattattattgaaaaaattgatggttgtaatagtatggattgtgtttgtggtacaaa 1080


Query: 1081 cttttgttttggttgtggtgttaaaagaactgaacatactgccaaaagattcccatgtta 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 cttttgttttggttgtggtgttaaaagaactgaacatactgccaaaagattcccatgtta 1140


Query: 1141 tgatccatattattatgattcttattaataataaaaaacaattttattttacaat 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tgatccatattattatgattcttattaataataaaaaacaattttattttacaat 1195


>Contig-U14095-1 (Contig-U14095-1Q) /CSM_Contig/Contig-U14095-1Q.Seq.d
Length = 535

Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 205 taataattcaacaaccacaacaacaac 231
|||| ||||||||||||||||||||||
Sbjct: 483 taatgattcaacaaccacaacaacaac 509


>Contig-U12755-1 (Contig-U12755-1Q) /CSM_Contig/Contig-U12755-1Q.Seq.d
Length = 987

Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 213 caacaaccacaacaacaacatttaaaa 239
||||||| |||||||||||||||||||
Sbjct: 576 caacaacaacaacaacaacatttaaaa 602


Score = 34.2 bits (17), Expect = 0.34
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 212 tcaacaaccacaacaacaaca 232
|||||||| ||||||||||||
Sbjct: 431 tcaacaacaacaacaacaaca 451


Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 1084 ttgttttggttgtggtg 1100
|||||||||||||||||
Sbjct: 539 ttgttttggttgtggtg 523


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 213 caacaaccacaacaacaaca 232
||||||| ||||||||||||
Sbjct: 570 caacaacaacaacaacaaca 589


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 213 caacaaccacaacaacaaca 232
||||||| ||||||||||||
Sbjct: 573 caacaacaacaacaacaaca 592


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 213 caacaaccacaacaacaaca 232
||||||| ||||||||||||
Sbjct: 399 caacaacaacaacaacaaca 418


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 213 caacaaccacaacaacaaca 232
||||||| ||||||||||||
Sbjct: 396 caacaacaacaacaacaaca 415


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 213 caacaaccacaacaacaaca 232
||||||| ||||||||||||
Sbjct: 405 caacaacaacaacaacaaca 424


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 213 caacaaccacaacaacaaca 232
||||||| ||||||||||||
Sbjct: 435 caacaacaacaacaacaaca 454


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 213 caacaaccacaacaacaaca 232
||||||| ||||||||||||
Sbjct: 402 caacaacaacaacaacaaca 421


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,785
Number of Sequences: 6905
Number of extensions: 53785
Number of successful extensions: 7470
Number of sequences better than 10.0: 1106
length of query: 1205
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1189
effective length of database: 5,564,391
effective search space: 6616060899
effective search space used: 6616060899
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U10198-1 (Contig-U10198-1Q) /CSM_Contig/Contig-U10198-1Q.Seq.d
(1205 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU262285) Dictyostelium discoideum vegetative cDNA clone:VS... 1203 0.0 1
(BJ433193) Dictyostelium discoideum cDNA clone:ddv21f02, 3' ... 1181 0.0 1
(BJ430904) Dictyostelium discoideum cDNA clone:ddv9p05, 3' e... 825 0.0 3
(BJ414980) Dictyostelium discoideum cDNA clone:ddv21f02, 5' ... 722 0.0 2
(AU033818) Dictyostelium discoideum slug cDNA, clone SLB478. 803 0.0 1
(AU060784) Dictyostelium discoideum slug cDNA, clone SLB478. 496 e-135 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 48 3e-06 14
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 4e-06 9
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 40 1e-05 7
(AC215628) Populus trichocarpa clone POP027-K15, complete se... 34 2e-05 12
(CT990566) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 1e-04 8
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 40 3e-04 8
(AL844509) Plasmodium falciparum chromosome 13. 38 5e-04 16
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 6e-04 12
(CU062405) Zebrafish DNA sequence from clone CH73-140O19 in ... 44 6e-04 2
(AY160096) Dictyostelium discoideum nucleotide exchange fact... 36 7e-04 6
(CT027763) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 9e-04 12
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 40 0.002 11
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 40 0.005 12
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 42 0.006 11
(CU024870) Zebrafish DNA sequence from clone CH211-193F12. 42 0.008 7
(AF481921) Dictyostelium discoideum cGMP-stimulated cGMP-spe... 34 0.008 4
(AL844506) Plasmodium falciparum chromosome 7. 34 0.009 13
(CR854826) Zebrafish DNA sequence from clone DKEY-120E17 in ... 34 0.011 8
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 36 0.015 9
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 40 0.016 12
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 36 0.017 8
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.018 18
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 42 0.018 11
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 0.022 17
(EF568108) Glossina pallidipes salivary gland hypertrophy vi... 34 0.023 11
(CR925858) Zebrafish DNA sequence from clone DKEYP-50E3 in l... 46 0.026 2
(AF024654) Dictyostelium discoideum hybrid histidine kinase ... 36 0.027 5
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 32 0.027 7
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.027 10
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 0.028 12
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 40 0.037 6
(CT583719) Zebrafish DNA sequence from clone DKEY-112E7 in l... 38 0.040 7
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.042 13
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **... 42 0.045 12
(AY047363) Dictyostelium discoideum cGMP-stimulated cGMP pho... 34 0.047 4
(AP004467) Lotus japonicus genomic DNA, chromosome 2, clone:... 36 0.048 7
(CT385710) Sus scrofa genomic clone CH242-444E10, genomic su... 52 0.050 1
(EV435758) 37456_991 Quinqueloculina sp. cDNA library Quinqu... 52 0.050 1
(EV435750) 37448_983 Quinqueloculina sp. cDNA library Quinqu... 52 0.050 1
(AC213572) Chlorocebus aethiops clone CH252-18G21, WORKING D... 36 0.057 7
(AY254473) Dictyostelium discoideum nucleotide exchange fact... 34 0.069 4
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI... 34 0.073 9
(DR147155) 49054892 Drosophila pseudoobscura embryonic cDNA ... 46 0.074 3
(BX005000) Zebrafish DNA sequence from clone DKEY-25O16 in l... 38 0.076 9
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 0.082 15
(AC173722) Strongylocentrotus purpuratus clone R3-1008C3, **... 50 0.082 3
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.092 12
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 0.098 12
(BX890575) Zebrafish DNA sequence from clone CH211-235C4 in ... 40 0.098 9
(CP000107) Ehrlichia canis str. Jake, complete genome. 34 0.100 21
(AL607089) Human DNA sequence from clone RP11-248I9 on chrom... 48 0.10 7
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 38 0.11 12
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 46 0.11 11
(AC115584) Dictyostelium discoideum chromosome 2 map complem... 34 0.12 8
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 0.12 13
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 0.15 6
(CU469569) Zebrafish DNA sequence from clone CH73-76B22 in l... 40 0.15 5
(EK171394) 1095458076961 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.15 3
(AC074279) Homo sapiens chromosome 3 clone RP11-373L21, WORK... 38 0.17 6
(BJ366033) Dictyostelium discoideum cDNA clone:ddc37c14, 5' ... 36 0.18 3
(BJ364555) Dictyostelium discoideum cDNA clone:ddc32k03, 5' ... 36 0.18 3
(CE737653) tigr-gss-dog-17000315465946 Dog Library Canis lup... 44 0.18 2
(BX005328) Zebrafish DNA sequence from clone DKEY-63D15 in l... 40 0.19 9
(EJ789568) 1093017370298 Global-Ocean-Sampling_GS-30-02-01-1... 34 0.20 4
(DJ022043) NOVEL COMPOSITIONS AND METHODS FOR THE TREATMENT ... 50 0.20 1
(CS043845) Sequence 4399 from Patent WO2005019258. 50 0.20 1
(CS034893) Sequence 4399 from Patent WO2005016962. 50 0.20 1
(AC107241) Homo sapiens chromosome 15, clone CTD-2501E16, co... 50 0.20 1
(AC087385) Homo sapiens chromosome 15, clone RP11-745A24, co... 50 0.20 1
(AC019146) Homo sapiens chromosome 15 clone RP11-745A24, WOR... 50 0.20 1
(AC012344) Homo sapiens chromosome 15 clone RP11-339C23 map ... 50 0.20 1
(DX533035) GH_MBb0043D18f GH_MBb Gossypium hirsutum genomic ... 50 0.20 1
(DA116820) Homo sapiens cDNA clone BRACE3036303, 5' end, mRN... 50 0.20 1
(BX501154) Homo sapiens mRNA; EST DKFZp779E0161_r1 (from cl... 50 0.20 1
(BX491054) Homo sapiens mRNA; EST DKFZp686B1094_r1 (from cl... 50 0.20 1
(EY351999) CAWZ18414.fwd CAWZ Helobdella robusta Primary Lat... 50 0.20 1
(BX957311) Zebrafish DNA sequence from clone DKEY-58F6 in li... 38 0.20 10
(BJ365802) Dictyostelium discoideum cDNA clone:ddc36k18, 5' ... 36 0.22 3
(BX180305) Danio rerio genomic clone DKEY-181P12, genomic su... 38 0.22 2
(BJ365961) Dictyostelium discoideum cDNA clone:ddc37o06, 5' ... 36 0.23 3
(AL212451) Tetraodon nigroviridis genome survey sequence PUC... 38 0.23 2
(AL844507) Plasmodium falciparum chromosome 8. 38 0.23 16
(AU074405) Dictyostelium discoideum slug cDNA, clone SSK612. 46 0.25 2
(DW066094) CLLY5637.b1_I18.ab1 CLL(XYZ) lettuce saligna Lact... 48 0.26 2
(AP007800) Lotus japonicus genomic DNA, chromosome 2, clone:... 36 0.26 6
(AC142551) Danio rerio strain Tue clone CH211-28C9, WORKING ... 36 0.29 11
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 38 0.30 12
(Y13119) Dictyostelium discoideum mRNA for CudA protein. 42 0.30 3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 40 0.31 6
(AC232036) Solanum tuberosum strain Diploid genotype RH89-03... 44 0.32 7
(AC209193) Populus trichocarpa clone POP082-D02, complete se... 40 0.35 5
(EU246896) Racomitrium aciculare rps4-trnT intergenic spacer... 36 0.37 3
(AC166875) Oryctolagus cuniculus clone LB1-275O22, WORKING D... 40 0.38 6
(EC825822) SME00001482 esmbsro2 Sawyeria marylandensis cDNA,... 30 0.38 4

>(AU262285) Dictyostelium discoideum vegetative cDNA clone:VSB844, 3'
end single read.
Length = 618

Score = 1203 bits (607), Expect = 0.0
Identities = 607/607 (100%)
Strand = Plus / Plus


Query: 589 cattcgttattgtccagaaatcgattgcggtgctgcaattatcatgccatcagataataa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattcgttattgtccagaaatcgattgcggtgctgcaattatcatgccatcagataataa 60


Query: 649 taattcaacaactcaatctgtagaatgctcaaatcaagaatgtaaatcatcatattgttt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taattcaacaactcaatctgtagaatgctcaaatcaagaatgtaaatcatcatattgttt 120


Query: 709 aaattgcagagagccatcgcatagcggtctcacctgtgagcaatatgaaactgccaaatt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaattgcagagagccatcgcatagcggtctcacctgtgagcaatatgaaactgccaaatt 180


Query: 769 agaattagcagagttaatggaaattgaagaaaatcaaatgaccttcaagcaaagattaat 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaattagcagagttaatggaaattgaagaaaatcaaatgaccttcaagcaaagattaat 240


Query: 829 ggagttattcagtcaaggtgatgcaaattccatactctatgataaaactccaccaaaaag 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggagttattcagtcaaggtgatgcaaattccatactctatgataaaactccaccaaaaag 300


Query: 889 agtaagaaatagacttttctttctcgccaaaaaatggggtagatatgtcaataccgatag 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtaagaaatagacttttctttctcgccaaaaaatggggtagatatgtcaataccgatag 360


Query: 949 aattcacgaattacaagtatcagcatcaactttaaaatgggttcttgaaaatacaaaaat 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattcacgaattacaagtatcagcatcaactttaaaatgggttcttgaaaatacaaaaat 420


Query: 1009 atgtccaacttgtaaaattattattgaaaaaattgatggttgtaatagtatggattgtgt 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgtccaacttgtaaaattattattgaaaaaattgatggttgtaatagtatggattgtgt 480


Query: 1069 ttgtggtacaaacttttgttttggttgtggtgttaaaagaactgaacatactgccaaaag 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgtggtacaaacttttgttttggttgtggtgttaaaagaactgaacatactgccaaaag 540


Query: 1129 attcccatgttatgatccatattattatgattcttattaataataaaaaacaattttatt 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attcccatgttatgatccatattattatgattcttattaataataaaaaacaattttatt 600


Query: 1189 ttacaat 1195
|||||||
Sbjct: 601 ttacaat 607

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,607,828,339
Number of extensions: 115515673
Number of successful extensions: 11063973
Number of sequences better than 10.0: 483
Length of query: 1205
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1181
Effective length of database: 97,308,875,965
Effective search space: 114921782514665
Effective search space used: 114921782514665
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10198-1 (Contig-U10198-1Q) /CSM_Contig/Contig-U10198-1Q.Seq.d
(1205 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC133211_1(BC133211|pid:none) Xenopus laevis hypothetical protei... 116 1e-24
BC133406_1(BC133406|pid:none) Bos taurus ring finger protein 14,... 115 2e-24
CR456702_1(CR456702|pid:none) Homo sapiens full open reading fra... 115 4e-24
(Q9JI90) RecName: Full=E3 ubiquitin-protein ligase RNF14; ... 114 9e-24
AK011316_1(AK011316|pid:none) Mus musculus 10 days embryo whole ... 114 9e-24
CR859336_1(CR859336|pid:none) Pongo abelii mRNA; cDNA DKFZp459A2... 114 9e-24
BC099304_1(BC099304|pid:none) Xenopus laevis hypothetical protei... 113 1e-23
BC103648_1(BC103648|pid:none) Rattus norvegicus ring finger prot... 113 2e-23
BC166497_1(BC166497|pid:none) Rattus norvegicus ring finger prot... 113 2e-23
AK023698_1(AK023698|pid:none) Homo sapiens cDNA FLJ13636 fis, cl... 112 3e-23
(Q9US46) RecName: Full=E3 ubiquitin-protein ligase itt1; ... 110 8e-23
BC084251_1(BC084251|pid:none) Xenopus laevis hypothetical LOC495... 109 2e-22
BC071542_1(BC071542|pid:none) Danio rerio ring finger protein 14... 104 7e-21
DQ446662_1(DQ446662|pid:none) Arabidopsis thaliana clone pENTR22... 100 1e-19
AL662952_29(AL662952|pid:none) Oryza sativa genomic DNA, chromos... 100 2e-19
BT072513_1(BT072513|pid:none) Salmo salar clone ssal-rgf-528-167... 99 3e-19
AM488350_1(AM488350|pid:none) Vitis vinifera contig VV78X205586.... 92 4e-17
CP001323_837(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 90 1e-16
BT062797_1(BT062797|pid:none) Zea mays full-length cDNA clone ZM... 86 3e-15
AP008210_1738(AP008210|pid:none) Oryza sativa (japonica cultivar... 86 3e-15
AK063313_1(AK063313|pid:none) Oryza sativa Japonica Group cDNA c... 86 3e-15
AP008210_1737(AP008210|pid:none) Oryza sativa (japonica cultivar... 85 4e-15
AP008210_1736(AP008210|pid:none) Oryza sativa (japonica cultivar... 85 4e-15
AL662952_28(AL662952|pid:none) Oryza sativa genomic DNA, chromos... 85 4e-15
AL024486_3(AL024486|pid:none) Arabidopsis thaliana DNA chromosom... 84 8e-15
BT069814_1(BT069814|pid:none) Zea mays full-length cDNA clone ZM... 82 4e-14
EU965180_1(EU965180|pid:none) Zea mays clone 284321 unknown mRNA. 82 4e-14
AB022220_3(AB022220|pid:none) Arabidopsis thaliana genomic DNA, ... 82 5e-14
AC007767_10(AC007767|pid:none) Sequence of BAC F5D14 from Arabid... 81 6e-14
AY003872_22(AY003872|pid:none) Plasmodium vivax YAC 1H14, comple... 81 8e-14
AL442164_19(AL442164|pid:none) Neurospora crassa DNA linkage gro... 80 2e-13
AK068795_1(AK068795|pid:none) Oryza sativa Japonica Group cDNA c... 79 2e-13
U80847_5(U80847|pid:none) Caenorhabditis elegans cosmid C17H11, ... 79 3e-13
U80847_8(U80847|pid:none) Caenorhabditis elegans cosmid C17H11, ... 79 3e-13
U80847_6(U80847|pid:none) Caenorhabditis elegans cosmid C17H11, ... 79 3e-13
U80847_7(U80847|pid:none) Caenorhabditis elegans cosmid C17H11, ... 79 3e-13
AK109320_1(AK109320|pid:none) Oryza sativa Japonica Group cDNA c... 79 3e-13
AF003137_8(AF003137|pid:none) Caenorhabditis elegans cosmid C27A... 79 4e-13
H87793(H87793)protein C27A12.8 [imported] - Caenorhabditis elegans 79 4e-13
AC151460_16(AC151460|pid:none) Medicago truncatula clone mth2-6f... 78 5e-13
BC161131_1(BC161131|pid:none) Xenopus tropicalis hypothetical pr... 78 7e-13
(Q84RR2) RecName: Full=Probable E3 ubiquitin-protein ligase ARI2... 77 9e-13
T25555(T25555)hypothetical protein C17H11.6 - Caenorhabditis ele... 76 2e-12
AP005426_8(AP005426|pid:none) Oryza sativa Japonica Group genomi... 75 4e-12
AK073786_1(AK073786|pid:none) Oryza sativa Japonica Group cDNA c... 75 4e-12
CP000582_382(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 75 5e-12
AB037807_1(AB037807|pid:none) Homo sapiens mRNA for KIAA1386 pro... 75 6e-12
BC063861_1(BC063861|pid:none) Homo sapiens ankyrin repeat and IB... 75 6e-12
(Q9P2G1) RecName: Full=Ankyrin repeat and IBR domain-containing ... 75 6e-12
AK129343_1(AK129343|pid:none) Mus musculus mRNA for mKIAA1386 pr... 74 8e-12
BC145511_1(BC145511|pid:none) Mus musculus ankyrin repeat and IB... 74 8e-12
AK147768_1(AK147768|pid:none) Mus musculus melanocyte cDNA, RIKE... 74 1e-11
(P50636) RecName: Full=E3 ubiquitin-protein ligase RNF19A; ... 74 1e-11
AF003137_7(AF003137|pid:none) Caenorhabditis elegans cosmid C27A... 74 1e-11
EU967307_1(EU967307|pid:none) Zea mays clone 301304 ubiquitin-pr... 74 1e-11
AF003137_6(AF003137|pid:none) Caenorhabditis elegans cosmid C27A... 74 1e-11
(Q2VJ60) RecName: Full=E3 ubiquitin-protein ligase RNF19A; ... 74 1e-11
AC006790_10(AC006790|pid:none) Caenorhabditis elegans cosmid Y49... 74 1e-11
BC160518_1(BC160518|pid:none) Xenopus tropicalis ring finger pro... 73 2e-11
BC124834_1(BC124834|pid:none) Xenopus laevis E3 ubiquitin-protei... 73 2e-11
(A2A7Q9) RecName: Full=E3 ubiquitin-protein ligase RNF19B; ... 73 2e-11
AK001774_1(AK001774|pid:none) Homo sapiens cDNA FLJ10912 fis, cl... 73 2e-11
AP003948_1(AP003948|pid:none) Oryza sativa Japonica Group genomi... 73 2e-11
(Q6ZMZ0) RecName: Full=E3 ubiquitin-protein ligase RNF19B; ... 73 2e-11
BC130177_1(BC130177|pid:none) Xenopus laevis E3 ubiquitin-protei... 73 2e-11
T16477(T16477) hypothetical protein F56D2.5 - Caenorhabditis ele... 72 3e-11
AL138657_5(AL138657|pid:none) Arabidopsis thaliana DNA chromosom... 71 7e-11
(Q9LVW9) RecName: Full=Putative E3 ubiquitin-protein ligase ARI4... 71 7e-11
AC103891_9(AC103891|pid:none) Oryza sativa (japonica cultivar-gr... 71 9e-11
(Q1L8G6) RecName: Full=Ankyrin repeat and IBR domain-containing ... 70 1e-10
EF085352_1(EF085352|pid:none) Picea sitchensis clone WS02810_G06... 70 2e-10
CR382132_1140(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 70 2e-10
BT071882_1(BT071882|pid:none) Salmo salar clone ssal-rgf-501-287... 69 3e-10
DQ446542_1(DQ446542|pid:none) Arabidopsis thaliana clone pENTR22... 69 3e-10
BT045009_1(BT045009|pid:none) Salmo salar clone ssal-rgf-509-300... 69 3e-10
DQ446541_1(DQ446541|pid:none) Arabidopsis thaliana clone pENTR22... 69 3e-10
CR753876_3(CR753876|pid:none) Zebrafish DNA sequence from clone ... 69 3e-10
(Q1L8L6) RecName: Full=E3 ubiquitin-protein ligase RNF19B; ... 69 3e-10
U84248_1(U84248|pid:none) Aedes aegypti blood meal-induced prote... 69 4e-10
(Q9P3U4) RecName: Full=Uncharacterized RING finger protein C328.... 68 6e-10
CR954202_295(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 68 6e-10
BC074096_1(BC074096|pid:none) Danio rerio zgc:91964, mRNA (cDNA ... 68 7e-10
BX324213_2(BX324213|pid:none) Zebrafish DNA sequence from clone ... 68 7e-10
AM426870_3(AM426870|pid:none) Vitis vinifera contig VV78X082398.... 67 1e-09
FJ155070_1(FJ155070|pid:none) Triticum turgidum IBR1/IBR2 fusion... 67 1e-09
CR382134_380(CR382134|pid:none) Debaryomyces hansenii strain CBS... 67 1e-09
BC062374_1(BC062374|pid:none) Homo sapiens ring finger protein 1... 67 2e-09
AC142210_5(AC142210|pid:none) Solanum demissum chromosome 11 clo... 67 2e-09
EU976691_1(EU976691|pid:none) Zea mays clone 987363 unknown mRNA. 66 2e-09
FN357707_2(FN357707|pid:none) Schistosoma mansoni genome sequenc... 66 3e-09
FM992688_1298(FM992688|pid:none) Candida dubliniensis CD36 chrom... 66 3e-09
BX842692_3(BX842692|pid:none) Zebrafish DNA sequence from clone ... 65 4e-09
BX293564_1(BX293564|pid:none) Zebrafish DNA sequence from clone ... 65 4e-09
BC163269_1(BC163269|pid:none) Danio rerio si:ch211-278j3.3, mRNA... 65 4e-09
(Q84RR0) RecName: Full=Probable E3 ubiquitin-protein ligase ARI7... 65 5e-09
(Q04638) RecName: Full=Translation termination inhibitor protein... 65 6e-09
(Q9SKC2) RecName: Full=Probable E3 ubiquitin-protein ligase ARI1... 65 6e-09
DQ446587_1(DQ446587|pid:none) Arabidopsis thaliana clone pENTR22... 65 6e-09
EU637017_18(EU637017|pid:none) Adineta vaga glycoprotein gene, p... 64 8e-09
EU972080_1(EU972080|pid:none) Zea mays clone 374552 ubiquitin-pr... 64 8e-09
(Q9SKC4) RecName: Full=Probable E3 ubiquitin-protein ligase ARI1... 64 1e-08
AM484034_2(AM484034|pid:none) Vitis vinifera contig VV78X069996.... 63 2e-08
AC116305_135(AC116305|pid:none) Dictyostelium discoideum chromos... 63 2e-08
AL662952_27(AL662952|pid:none) Oryza sativa genomic DNA, chromos... 63 2e-08
AC007134_10(AC007134|pid:none) Arabidopsis thaliana chromosome 2... 62 3e-08
AP008215_1107(AP008215|pid:none) Oryza sativa (japonica cultivar... 62 3e-08
AP006756_9(AP006756|pid:none) Oryza sativa Japonica Group genomi... 62 3e-08
AM502248_253(AM502248|pid:none) Leishmania infantum chromosome 30. 62 3e-08
AC006300_3(AC006300|pid:none) Arabidopsis thaliana chromosome 2 ... 62 4e-08
AJ130978_1(AJ130978|pid:none) Homo sapiens mRNA for Ariadne-2 pr... 62 5e-08
AC009999_16(AC009999|pid:none) Sequence of BAC T20M3 from Arabid... 61 7e-08
T31653(T31653)hypothetical protein Y57A10A.ff - Caenorhabditis e... 61 7e-08
AJ510208_1(AJ510208|pid:none) Arabidopsis thaliana ari5 gene for... 61 7e-08
AL117195_29(AL117195|pid:none) Caenorhabditis elegans YAC Y57A10... 61 7e-08
(Q8L829) RecName: Full=Probable E3 ubiquitin-protein ligase ARI5... 61 7e-08
AL832329_1(AL832329|pid:none) Homo sapiens mRNA; cDNA DKFZp451E0... 61 7e-08
EU832137_1(EU832137|pid:none) Synthetic construct Homo sapiens c... 61 7e-08
BC063311_1(BC063311|pid:none) Homo sapiens ring finger protein 1... 61 7e-08
AB026632_12(AB026632|pid:none) Arabidopsis thaliana genomic DNA,... 61 7e-08
CU928180_410(CU928180|pid:none) Kluyveromyces thermotolerans str... 61 7e-08
(Q7Z419) RecName: Full=E3 ubiquitin-protein ligase RNF144B; ... 61 7e-08
AL138725_4(AL138725|pid:none) Human DNA sequence from clone RP11... 61 7e-08
CU928174_604(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 61 9e-08
AC150786_17(AC150786|pid:none) Medicago truncatula clone mth2-17... 60 1e-07
CR954211_255(CR954211|pid:none) Ostreococcus tauri strain OTTH05... 60 1e-07
AP007155_312(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 60 2e-07
(A5PK27) RecName: Full=E3 ubiquitin-protein ligase RNF144B; ... 60 2e-07
AM920437_426(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 60 2e-07
AF124663_1(AF124663|pid:none) Mus musculus UbcM4 interacting pro... 60 2e-07
AF003137_5(AF003137|pid:none) Caenorhabditis elegans cosmid C27A... 59 3e-07
AP008214_1201(AP008214|pid:none) Oryza sativa (japonica cultivar... 59 3e-07
AJ243190_1(AJ243190|pid:none) Homo sapiens mRNA for UbcH 7-bindi... 59 3e-07
(Q8W468) RecName: Full=Probable E3 ubiquitin-protein ligase ARI8... 59 3e-07
(Q9Y4X5) RecName: Full=Protein ariadne-1 homolog; Short... 59 3e-07
AJ130977_1(AJ130977|pid:none) Mus musculus mRNA for Ariadne prot... 59 3e-07
AB209432_1(AB209432|pid:none) Homo sapiens mRNA for Ariadne-1 pr... 59 3e-07
(Q9Z1K5) RecName: Full=Protein ariadne-1 homolog; Short... 59 3e-07
(A2VEA3) RecName: Full=Protein ariadne-1 homolog; Short... 59 3e-07
EU957044_1(EU957044|pid:none) Zea mays clone 1581205 ubiquitin-p... 59 4e-07
JC5983(JC5983) protein kinase C-interacting RBCC protein 1 - rat... 59 4e-07
(P50876) RecName: Full=Probable E3 ubiquitin-protein ligase RNF1... 59 4e-07
D79983_1(D79983|pid:none) Homo sapiens KIAA0161 mRNA, partial cds. 59 4e-07
BC061723_1(BC061723|pid:none) Rattus norvegicus RanBP-type and C... 59 4e-07
(Q62921) RecName: Full=RanBP-type and C3HC4-type zinc finger-con... 59 4e-07
AB018114_12(AB018114|pid:none) Arabidopsis thaliana genomic DNA,... 58 6e-07
CU633901_116(CU633901|pid:none) Podospora anserina genomic DNA c... 58 8e-07
AY811388_1(AY811388|pid:none) Schistosoma japonicum SJCHGC05846 ... 58 8e-07
BC126562_1(BC126562|pid:none) Bos taurus RanBP-type and C3HC4-ty... 57 1e-06
BC067684_1(BC067684|pid:none) Danio rerio zgc:85905, mRNA (cDNA ... 57 1e-06
(Q5RFV4) RecName: Full=Probable E3 ubiquitin-protein ligase RNF1... 57 1e-06
DQ447006_1(DQ447006|pid:none) Arabidopsis thaliana clone pENTR22... 57 1e-06
BC015219_1(BC015219|pid:none) Homo sapiens RanBP-type and C3HC4-... 57 1e-06
BC074717_1(BC074717|pid:none) Xenopus tropicalis ariadne homolog... 57 1e-06
AL121747_1(AL121747|pid:none) Human DNA sequence from clone RP5-... 57 1e-06
BC057523_1(BC057523|pid:none) Danio rerio ariadne ubiquitin-conj... 57 1e-06
AC091246_16(AC091246|pid:none) Oryza sativa (japonica cultivar-g... 57 1e-06
AM472451_3(AM472451|pid:none) Vitis vinifera contig VV78X011197.... 57 1e-06
AB107766_1(AB107766|pid:none) Homo sapiens HOIL-1 mRNA for ubiqu... 57 1e-06
AM461336_4(AM461336|pid:none) Vitis vinifera contig VV78X142132.... 57 1e-06
AK223550_1(AK223550|pid:none) Homo sapiens mRNA for ariadne homo... 57 2e-06
(O95376) RecName: Full=Protein ariadne-2 homolog; Short... 57 2e-06
AC130802_18(AC130802|pid:none) Medicago truncatula clone mth2-28... 57 2e-06
AK001800_1(AK001800|pid:none) Homo sapiens cDNA FLJ10938 fis, cl... 57 2e-06
AB169516_1(AB169516|pid:none) Macaca fascicularis brain cDNA, cl... 56 2e-06
AK122811_1(AK122811|pid:none) Homo sapiens cDNA FLJ16403 fis, cl... 56 3e-06
CU928168_688(CU928168|pid:none) Kluyveromyces thermotolerans str... 56 3e-06
BC079540_1(BC079540|pid:none) Mus musculus ring finger protein 2... 56 3e-06
AK147861_1(AK147861|pid:none) Mus musculus melanocyte cDNA, RIKE... 56 3e-06
AL513467_20(AL513467|pid:none) Neurospora crassa DNA linkage gro... 56 3e-06
BC155331_1(BC155331|pid:none) Danio rerio zgc:175152, mRNA (cDNA... 56 3e-06
(Q8C1U3) RecName: Full=E3 ubiquitin-protein ligase RNF216; ... 56 3e-06
BT067251_1(BT067251|pid:none) Zea mays full-length cDNA clone ZM... 56 3e-06
AK154368_1(AK154368|pid:none) Mus musculus NOD-derived CD11c +ve... 56 3e-06
AE014134_1216(AE014134|pid:none) Drosophila melanogaster chromos... 55 4e-06
BC126008_1(BC126008|pid:none) Xenopus laevis ring finger protein... 55 4e-06
AF360999_1(AF360999|pid:none) Mus musculus UbcM4-interacting pro... 55 4e-06
GM754324_1(GM754324|pid:none) Sequence 17 from Patent WO20081168... 55 4e-06
BT041059_1(BT041059|pid:none) Zea mays full-length cDNA clone ZM... 55 4e-06
AL138657_16(AL138657|pid:none) Arabidopsis thaliana DNA chromoso... 55 4e-06
AB172297_1(AB172297|pid:none) Macaca fascicularis brain cDNA clo... 55 5e-06
AC145165_16(AC145165|pid:none) Medicago truncatula clone mth2-4j... 55 5e-06
DQ059093_1(DQ059093|pid:none) Arabidopsis thaliana RING domain p... 55 6e-06
CR380953_328(CR380953|pid:none) Candida glabrata strain CBS138 c... 55 6e-06
BC117807_1(BC117807|pid:none) Mus musculus ring finger protein 1... 55 6e-06
AC146875_19(AC146875|pid:none) Brassica rapa clone BAC KBrH117M1... 55 6e-06
AK133544_1(AK133544|pid:none) Mus musculus adult male xiphoid ca... 54 8e-06
AK172904_1(AK172904|pid:none) Mus musculus mRNA for mKIAA0161 pr... 54 8e-06
AM910990_369(AM910990|pid:none) Plasmodium knowlesi strain H chr... 54 8e-06
AK314332_1(AK314332|pid:none) Homo sapiens cDNA, FLJ95092, highl... 54 1e-05
AE013599_1207(AE013599|pid:none) Drosophila melanogaster chromos... 54 1e-05
CR548612_52(CR548612|pid:none) Paramecium tetraurelia macronucle... 54 1e-05
AB168452_1(AB168452|pid:none) Macaca fascicularis testis cDNA cl... 54 1e-05
AP008210_1735(AP008210|pid:none) Oryza sativa (japonica cultivar... 54 1e-05
AC091246_15(AC091246|pid:none) Oryza sativa (japonica cultivar-g... 54 1e-05
AX593443_1(AX593443|pid:none) Sequence 5 from Patent WO02088357.... 53 2e-05
AL606977_2(AL606977|pid:none) Mouse DNA sequence from clone RP23... 53 2e-05
AF513718_1(AF513718|pid:none) Homo sapiens E3 ubiquitin ligase (... 53 2e-05
AM393688_1(AM393688|pid:none) Synthetic construct Homo sapiens c... 53 2e-05
AK297416_1(AK297416|pid:none) Homo sapiens cDNA FLJ58201 complet... 53 2e-05
(Q9NWF9) RecName: Full=E3 ubiquitin-protein ligase RNF216; ... 53 2e-05
AY177396_1(AY177396|pid:none) Homo sapiens E3 ubiquitin ligase T... 53 2e-05
AY062174_1(AY062174|pid:none) Homo sapiens RING-like zinc finger... 53 2e-05
BX936317_1(BX936317|pid:none) Zebrafish DNA sequence from clone ... 53 2e-05
DQ665646_1(DQ665646|pid:none) Gibberella zeae RING-5 mRNA, compl... 53 2e-05
CU928179_894(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 53 2e-05
BC031483_1(BC031483|pid:none) Homo sapiens ankyrin repeat and IB... 53 2e-05
AY231421_1(AY231421|pid:none) Arabidopsis thaliana hypothetical ... 52 3e-05
AC005917_20(AC005917|pid:none) Arabidopsis thaliana chromosome 2... 52 3e-05
CR382134_55(CR382134|pid:none) Debaryomyces hansenii strain CBS7... 52 3e-05
AL132862_32(AL132862|pid:none) Caenorhabditis elegans YAC Y73F8A... 52 4e-05
AK166197_1(AK166197|pid:none) Mus musculus mammary gland RCB-052... 52 4e-05
AK109104_1(AK109104|pid:none) Oryza sativa Japonica Group cDNA c... 52 5e-05
AY119482_1(AY119482|pid:none) Drosophila melanogaster GH07166 fu... 52 5e-05
FN392319_945(FN392319|pid:none) Pichia pastoris GS115 chromosome... 51 9e-05
CR942479_1(CR942479|pid:none) Xenopus tropicalis finished cDNA, ... 51 9e-05
AF228527_1(AF228527|pid:none) Homo sapiens TRIAD3 mRNA, partial ... 51 9e-05
AC009259_41(AC009259|pid:none) Trypanosoma brucei chromosome 6 c... 51 9e-05
AL138657_12(AL138657|pid:none) Arabidopsis thaliana DNA chromoso... 51 9e-05
DQ653034_1(DQ653034|pid:none) Arabidopsis thaliana clone 0000019... 50 2e-04
(Q94981) RecName: Full=Protein ariadne-1; Short=Ari-1; ... 50 2e-04
AK074486_1(AK074486|pid:none) Homo sapiens cDNA FLJ90005 fis, cl... 49 3e-04
AL353995_28(AL353995|pid:none) Arabidopsis thaliana DNA chromoso... 49 4e-04
(Q9FFN9) RecName: Full=Probable E3 ubiquitin-protein ligase ARI1... 49 4e-04
AF361001_1(AF361001|pid:none) Mus musculus UbcM4-interacting pro... 49 4e-04
AE014296_1929(AE014296|pid:none) Drosophila melanogaster chromos... 49 5e-04
AB179327_1(AB179327|pid:none) Macaca fascicularis testis cDNA cl... 49 5e-04
AM466554_5(AM466554|pid:none) Vitis vinifera contig VV78X031799.... 49 5e-04
AL080237_4(AL080237|pid:none) Arabidopsis thaliana DNA chromosom... 49 5e-04
BX908808_23(BX908808|pid:none) Neurospora crassa DNA linkage gro... 48 6e-04
AC006300_4(AC006300|pid:none) Arabidopsis thaliana chromosome 2 ... 48 6e-04
(Q8TC41) RecName: Full=Probable E3 ubiquitin-protein ligase RNF2... 47 0.001
AE017349_298(AE017349|pid:none) Cryptococcus neoformans var. neo... 47 0.001
AF389451_78(AF389451|pid:none) Tiger frog virus, complete genome. 47 0.001
T29562(T29562)hypothetical protein T12E12.1 - Caenorhabditis ele... 47 0.001
AL136128_3(AL136128|pid:none) Human DNA sequence from clone RP1-... 47 0.001
(Q924T7) RecName: Full=RING finger protein 31; &BC057595_1(BC05... 47 0.001
AX405817_1(AX405817|pid:none) Sequence 232 from Patent WO0222660. 47 0.001
BC124567_1(BC124567|pid:none) Xenopus tropicalis hypothetical pr... 47 0.001
CU633438_119(CU633438|pid:none) Podospora anserina genomic DNA c... 47 0.001
BT045523_1(BT045523|pid:none) Salmo salar clone ssal-rgf-524-064... 47 0.001
AM270237_13(AM270237|pid:none) Aspergillus niger contig An11c020... 47 0.002
AM270309_42(AM270309|pid:none) Aspergillus niger contig An14c001... 47 0.002
AP005090_14(AP005090|pid:none) Oryza sativa Japonica Group genom... 47 0.002
AP008215_1369(AP008215|pid:none) Oryza sativa (japonica cultivar... 47 0.002
AK055542_1(AK055542|pid:none) Homo sapiens cDNA FLJ30980 fis, cl... 46 0.002
BC009821_1(BC009821|pid:none) Homo sapiens ring finger protein 3... 46 0.002
DQ446737_1(DQ446737|pid:none) Arabidopsis thaliana clone pENTR22... 46 0.002
BC093281_1(BC093281|pid:none) Danio rerio Parkinson disease (aut... 46 0.002
AY256461_1(AY256461|pid:none) Homo sapiens zinc in-between-ring-... 46 0.002
(Q96EP0) RecName: Full=RING finger protein 31; AltName: Full=Zin... 46 0.002
BC017376_1(BC017376|pid:none) Homo sapiens ring finger protein 3... 46 0.002
AB384423_1(AB384423|pid:none) Synthetic construct DNA, clone: pF... 46 0.002
AK122711_1(AK122711|pid:none) Homo sapiens cDNA FLJ16199 fis, cl... 46 0.002
DQ653132_1(DQ653132|pid:none) Arabidopsis thaliana clone 0000010... 46 0.002
AF381281_1(AF381281|pid:none) Rattus norvegicus parkin isoform m... 46 0.003
AF168004_1(AF168004|pid:none) Rattus norvegicus Parkin mRNA, par... 46 0.003
(Q9JK66) RecName: Full=E3 ubiquitin-protein ligase parkin; ... 46 0.003
FN317350_1(FN317350|pid:none) Schistosoma japonicum isolate Anhu... 46 0.003
AJ009771_1(AJ009771|pid:none) Homo sapiens mRNA for putative RIN... 46 0.003
AB039878_1(AB039878|pid:none) Rattus norvegicus mRNA for Parkin,... 46 0.003
AF343574_1(AF343574|pid:none) Rattus norvegicus parkin transcrip... 46 0.003
AP004380_19(AP004380|pid:none) Oryza sativa Japonica Group genom... 46 0.003
AE014296_3681(AE014296|pid:none) Drosophila melanogaster chromos... 46 0.003
AF381277_1(AF381277|pid:none) Rattus norvegicus parkin isoform m... 46 0.003
AB010070_7(AB010070|pid:none) Arabidopsis thaliana genomic DNA, ... 45 0.004
AL162691_4(AL162691|pid:none) Arabidopsis thaliana DNA chromosom... 45 0.004
AY150217_31(AY150217|pid:none) Ambystoma tigrinum stebbensi viru... 45 0.005
AF063866_224(AF063866|pid:none) Melanoplus sanguinipes entomopox... 45 0.005
DQ056142_3(DQ056142|pid:none) Coprinellus disseminatus strain C3... 45 0.005
AB208857_1(AB208857|pid:none) Homo sapiens mRNA for ariadne homo... 45 0.007
(Q9WVS6) RecName: Full=E3 ubiquitin-protein ligase parkin; ... 44 0.011
AY484589_5(AY484589|pid:none) Musa acuminata clone MuH9, genomic... 44 0.015
T16983(T16983) hypothetical protein - curled-leaved tobacco (fra... 44 0.015
CR858705_1(CR858705|pid:none) Pongo abelii mRNA; cDNA DKFZp459K2... 44 0.015
AC004747_5(AC004747|pid:none) Arabidopsis thaliana chromosome 2 ... 43 0.019
AP008217_14(AP008217|pid:none) Oryza sativa (japonica cultivar-g... 43 0.019
AL035697_3(AL035697|pid:none) Human DNA sequence from clone RP1-... 43 0.019
AL035697_5(AL035697|pid:none) Human DNA sequence from clone RP1-... 43 0.019
AF440570_31(AF440570|pid:none) Shrimp white spot syndrome virus,... 43 0.019
(O60260) RecName: Full=E3 ubiquitin-protein ligase parkin; ... 43 0.019
AL035697_4(AL035697|pid:none) Human DNA sequence from clone RP1-... 43 0.019
AM920428_1298(AM920428|pid:none) Penicillium chrysogenum Wiscons... 43 0.019
AB009973_1(AB009973|pid:none) Homo sapiens mRNA for Parkin, comp... 43 0.019
CU633438_942(CU633438|pid:none) Podospora anserina genomic DNA c... 43 0.019
AF332093_502(AF332093|pid:none) White spot syndrome virus, compl... 43 0.025
AF369029_24(AF369029|pid:none) White spot syndrome virus, comple... 43 0.025
(Q9C5A4) RecName: Full=Probable E3 ubiquitin-protein ligase ARI1... 42 0.043
AP007151_1216(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 42 0.043
AC145222_1(AC145222|pid:none) Medicago truncatula clone mth2-29a... 42 0.056
AB245403_1(AB245403|pid:none) Homo sapiens mRNA for parkin 2, co... 42 0.056
AC126012_28(AC126012|pid:none) Medicago truncatula clone mth2-27... 41 0.096
AM270347_58(AM270347|pid:none) Aspergillus niger contig An15c020... 41 0.096
FN357552_8(FN357552|pid:none) Schistosoma mansoni genome sequenc... 40 0.13
DQ437594_16(DQ437594|pid:none) Taterapox virus strain Dahomey 19... 40 0.13
AM920436_216(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 40 0.13
AJ510215_1(AJ510215|pid:none) Arabidopsis thaliana ari12 gene fo... 40 0.13
AB005234_24(AB005234|pid:none) Arabidopsis thaliana genomic DNA,... 40 0.16
FN392320_775(FN392320|pid:none) Pichia pastoris GS115 chromosome... 40 0.16
(Q84RQ8) RecName: Full=Probable E3 ubiquitin-protein ligase ARI1... 40 0.16
FJ492985_1(FJ492985|pid:none) Phytophthora cinnamomi clone 6576 ... 40 0.21
BX248497_16(BX248497|pid:none) Zebrafish DNA sequence from clone... 40 0.21
BX842627_3(BX842627|pid:none) Neurospora crassa DNA linkage grou... 40 0.21
DQ437590_5(DQ437590|pid:none) Variola virus strain Somalia 1977,... 40 0.21
CU633895_618(CU633895|pid:none) Podospora anserina genomic DNA c... 40 0.21
AL353871_3(AL353871|pid:none) Arabidopsis thaliana DNA chromosom... 39 0.28
EF042304_1(EF042304|pid:none) Aplysia californica NRAG7 protein ... 39 0.28
AB053120_5(AB053120|pid:none) Mus musculus DNA, proteasome activ... 39 0.28
FN357329_17(FN357329|pid:none) Schistosoma mansoni genome sequen... 39 0.37
CU638744_346(CU638744|pid:none) Podospora anserina genomic DNA c... 39 0.37
FM992689_712(FM992689|pid:none) Candida dubliniensis CD36 chromo... 39 0.37
AF381285_1(AF381285|pid:none) Rattus norvegicus parkin isoform m... 39 0.48
AL021474_1(AL021474|pid:none) Caenorhabditis elegans YAC Y32F6A,... 39 0.48
DQ441416_5(DQ441416|pid:none) Variola virus strain Benin, Dahome... 38 0.62
X94355_21(X94355|pid:none) Cowpox virus strain GRI-90, complete ... 38 0.62
D36837(D36837) D4R protein - variola virus (strain India-1967) ... 38 0.62
AL121747_10(AL121747|pid:none) Human DNA sequence from clone RP5... 38 0.62
CR380957_330(CR380957|pid:none) Candida glabrata strain CBS138 c... 38 0.62
AP007164_127(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 38 0.62
AM920435_1276(AM920435|pid:none) Penicillium chrysogenum Wiscons... 38 0.62
DQ437585_6(DQ437585|pid:none) Variola virus strain India 1964 71... 38 0.62
AF012825_12(AF012825|pid:none) Ectromelia virus strain Moscow, c... 38 0.62
AY678275_20(AY678275|pid:none) Vaccinia virus strain LC16m8, com... 38 0.62
CU633897_287(CU633897|pid:none) Podospora anserina genomic DNA c... 38 0.81
AM910992_94(AM910992|pid:none) Plasmodium knowlesi strain H chro... 38 0.81
AM270347_51(AM270347|pid:none) Aspergillus niger contig An15c020... 38 0.81
AY603973_8(AY603973|pid:none) Monkeypox virus strain MPXV-WRAIR7... 37 1.1
DQ011156_10(DQ011156|pid:none) Monkeypox virus strain Liberia_19... 37 1.1
BT074412_1(BT074412|pid:none) Osmerus mordax clone omor-eva-501-... 37 1.4
FJ546195_1(FJ546195|pid:none) Macaca fascicularis parkin variant... 37 1.4
T21000(T21000)hypothetical protein F15H10.4 - Caenorhabditis ele... 37 1.4
AP007175_549(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 37 1.4
AY313848_18(AY313848|pid:none) Vaccinia virus strain Acambis clo... 37 1.8
AC133004_8(AC133004|pid:none) Oryza sativa (japonica cultivar-gr... 37 1.8
AY810866_1(AY810866|pid:none) Schistosoma japonicum SJCHGC05864 ... 37 1.8
FN319083_1(FN319083|pid:none) Schistosoma japonicum isolate Anhu... 37 1.8
T29764(T29764)hypothetical protein T21E3.3 - Caenorhabditis eleg... 36 2.4
BC115345_1(BC115345|pid:none) Danio rerio zgc:136954, mRNA (cDNA... 36 2.4
AE013599_3395(AE013599|pid:none) Drosophila melanogaster chromos... 36 2.4
CP001324_356(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 36 2.4
(A8MUX0) RecName: Full=Putative keratin-associated protein 10-li... 36 2.4
EU000366_1(EU000366|pid:none) Drosophila melanogaster clone RE17... 36 2.4
AK122351_1(AK122351|pid:none) Mus musculus premature mRNA for mK... 36 3.1
AY145132_1(AY145132|pid:none) Homo sapiens p53-associated parkin... 36 3.1
CU928175_614(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 36 3.1
AY484669_8(AY484669|pid:none) Rabbitpox virus, complete genome. 36 3.1
CR749841_1(CR749841|pid:none) Homo sapiens mRNA; cDNA DKFZp686G1... 36 3.1
CP000312_1243(CP000312|pid:none) Clostridium perfringens SM101, ... 36 3.1
T23460(T23460)hypothetical protein K08E3.7 - Caenorhabditis eleg... 36 3.1
AM910986_105(AM910986|pid:none) Plasmodium knowlesi strain H chr... 36 3.1
BT002485_1(BT002485|pid:none) Arabidopsis thaliana Unknown prote... 36 3.1
CR749511_1(CR749511|pid:none) Homo sapiens mRNA; cDNA DKFZp686P2... 36 3.1
BC002879_1(BC002879|pid:none) Homo sapiens cullin 9, mRNA (cDNA ... 36 3.1
AP004654_18(AP004654|pid:none) Oryza sativa Japonica Group genom... 36 3.1
AY313847_18(AY313847|pid:none) Vaccinia virus strain Acambis clo... 35 4.0
AE017348_256(AE017348|pid:none) Cryptococcus neoformans var. neo... 35 4.0
AY603355_9(AY603355|pid:none) Vaccinia virus strain Acambis 3000... 35 4.0
AY809207_1(AY809207|pid:none) Schistosoma japonicum SJCHGC07351 ... 35 5.3
BX293547_2(BX293547|pid:none) Zebrafish DNA sequence from clone ... 35 5.3
CU633865_267(CU633865|pid:none) Podospora anserina genomic DNA c... 35 5.3
BC124291_1(BC124291|pid:none) Danio rerio zgc:153258, mRNA (cDNA... 35 5.3
AF380138_8(AF380138|pid:none) Monkeypox virus strain Zaire-96-I-... 35 5.3
AF381284_1(AF381284|pid:none) Homo sapiens parkin isoform mRNA, ... 35 5.3
AF381279_1(AF381279|pid:none) Rattus norvegicus parkin isoform m... 35 6.9
AC130601_15(AC130601|pid:none) Oryza sativa (japonica cultivar-g... 35 6.9
(O14686) RecName: Full=Histone-lysine N-methyltransferase MLL2; ... 35 6.9
AM910991_451(AM910991|pid:none) Plasmodium knowlesi strain H chr... 35 6.9
BX470172_1(BX470172|pid:none) Zebrafish DNA sequence from clone ... 35 6.9
FJ647810_1(FJ647810|pid:none) Tribolium castaneum nubbin (nub) m... 35 6.9
BC160628_1(BC160628|pid:none) Danio rerio si:dkey-3h3.3, mRNA (c... 35 6.9
BT034125_1(BT034125|pid:none) Zea mays full-length cDNA clone ZM... 34 9.0
BX784029_3(BX784029|pid:none) Zebrafish DNA sequence from clone ... 34 9.0
EF042305_1(EF042305|pid:none) Aplysia californica NRAG8 protein ... 34 9.0
CP000753_1365(CP000753|pid:none) Shewanella baltica OS185, compl... 34 9.0
CP000499_417(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 34 9.0
CR380955_426(CR380955|pid:none) Candida glabrata strain CBS138 c... 34 9.0
FN392321_353(FN392321|pid:none) Pichia pastoris GS115 chromosome... 34 9.0

>BC133211_1(BC133211|pid:none) Xenopus laevis hypothetical protein
LOC100037145, mRNA (cDNA clone MGC:160735 IMAGE:8332336),
complete cds.
Length = 451

Score = 116 bits (291), Expect = 1e-24
Identities = 76/276 (27%), Positives = 127/276 (46%), Gaps = 2/276 (0%)
Frame = +2

Query: 275 EFMENELKQSEIKNSSKTHLCMVCYCELPITDFYILDECNHKYCNLCLNTHYTMQVRSG- 451
+F E +LK+ SK+++C +C+ E ++ +C H YCN+CL +YT+Q+R G
Sbjct: 198 DFNEAQLKKCF---DSKSYMCNICFSEKLGSECTHFKDCQHIYCNVCLKDYYTVQIRDGQ 254

Query: 452 YSDLKCPMPTCRYKPTYEEVQHILSKDYFEKYDKILVNVHLNKDKNIRYCPEIDCGAAII 631
L CP P C T +V+ ++ F +YD++L+ L+ ++ YCP C A++
Sbjct: 255 VQALNCPEPKCSSVATPAQVKLLVGVKLFSRYDRLLLQSSLDLMADVLYCPRPSCQTAVV 314

Query: 632 MPSDNNNSTTQSVECSNQECKSSYCLNCREPSHSGLTCEQYETAKLELAELMEIEENQMT 811
+ CSN C ++C C+ H+ C KL L +E ++
Sbjct: 315 LEPGGTMGI-----CSN--CHYAFCTLCKMAYHAVAYC-NVTPVKLILVRDEYLEADEAG 366

Query: 812 FKQRLMELFSQGDANSILYDKTPPKRVRNRLFFLAKKWGRYVNTDRIHELQVSASTLKWV 991
K L K++G+ V I +++ +S +W+
Sbjct: 367 KK------------------------------LLEKRYGKNV---IIKAIEMKSS--EWL 391

Query: 992 LENTKICPTCKIIIEKIDGCNSMDCV-CGTNFCFGC 1096
NTK CP+C+ ++K+DGCN M C C NFC+ C
Sbjct: 392 NTNTKQCPSCRASVQKVDGCNKMCCARCKQNFCWLC 427

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,672,822,503
Number of extensions: 33023379
Number of successful extensions: 101411
Number of sequences better than 10.0: 376
Number of HSP's gapped: 100881
Number of HSP's successfully gapped: 570
Length of query: 401
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 270
Effective length of database: 621,205,444
Effective search space: 167725469880
Effective search space used: 167725469880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.40 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.12 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for Contig-U10198-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0