| Contig-U01636-1 |
| Contig ID |
Contig-U01636-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1096 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
5344016 |
| End point |
5342919 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
3 |
| Link to clone list |
U01636 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 7 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 5. 3 |
| Homology vs DNA |
Query= Contig-U01636-1 (Contig-U01636-1Q) /CSM_Contig/Contig-U01636-1Q.Seq.d
(1106 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C84680) Dictyostelium discoideum slug cDNA, clone SSD413. 729 0.0 1
(AU038650) Dictyostelium discoideum slug cDNA, clone SSL303. 607 e-169 1
(AU072095) Dictyostelium discoideum slug cDNA, clone SSD413. 174 5e-39 1
(AC178345) Strongylocentrotus purpuratus clone R3-3105E17, W... 38 0.008 2
(AC177067) Strongylocentrotus purpuratus clone R3-4004I24, W... 38 0.008 2
(AC178344) Strongylocentrotus purpuratus clone R3-3105E13, W... 38 0.008 2
(AL139135) Human DNA sequence from clone RP11-463J7 on chrom... 40 0.009 7
(CO377058) tah44e01.y1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 0.062 2
(CP000361) Arcobacter butzleri RM4018, complete genome. 38 0.090 17
(EJ476053) 1095403443162 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.18 1
(DU033132) 14861 Tomato HindIII BAC Library Solanum lycopers... 50 0.18 1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 46 0.24 9
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 0.37 14
(AC099711) Mus musculus chromosome 15, clone RP23-397C11, co... 38 0.37 8
(AC208727) Populus trichocarpa clone JGIACSB1073-D10, comple... 36 0.38 6
(EJ536375) 1092955261573 Global-Ocean-Sampling_GS-29-01-01-1... 34 0.52 2
(EK549001) 1095516107305 Global-Ocean-Sampling_GS-32-01-01-1... 34 0.52 2
(EJ569344) 1092960021796 Global-Ocean-Sampling_GS-29-01-01-1... 34 0.52 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.61 14
(AC134883) Homo sapiens chromosome UNK clone RP11-1197M23, W... 40 0.63 6
(AF362375) Dictyostelium discoideum histidine kinase DhkE (d... 38 0.70 4
(CT025155) Mouse DNA sequence from clone RP23-228F18 on chro... 48 0.73 1
(AC155264) Mus musculus BAC clone RP23-281B4 from chromosome... 48 0.73 1
(ES272045) JKBNM5_T7_014_H06_30JUN2004_034 JKBNM5 Brassica n... 48 0.73 1
(FF124877) CJAH-aaa86e07.b1 Caenorhabditis_japonica_CJAH1_ES... 48 0.73 1
(FC849538) CBHN5844.rev CBHN Metridium senile tentacle Metri... 48 0.73 1
(FC843916) CBHN2819.rev CBHN Metridium senile tentacle Metri... 48 0.73 1
(AL139317) Human chromosome 14 DNA sequence BAC R-589M4 of l... 40 0.77 5
(FC816029) Sr_pAMT7_04o11_T7 S. ratti mixed stage pAMP Stron... 32 0.79 3
(FF655879) G826P5270RB8.T0 Acorn worm normalized juvenile pE... 36 0.95 3
(AE017308) Mycoplasma mobile 163K complete genome. 34 1.3 14
(AC153351) Medicago truncatula clone mth2-103a3, complete se... 34 1.4 8
(EU154477) Musca domestica mitochondrion, partial genome. 40 1.4 3
(AC073969) Homo sapiens chromosome 2 clone RP11-164P17, WORK... 36 1.5 5
(AC009290) Homo sapiens clone RP11-45I18, WORKING DRAFT SEQU... 38 1.6 4
(AY916130) Epidermophyton floccosum mitochondrion, complete ... 36 1.6 2
(BI324178) kt54g07.y3 Strongyloides ratti L1 pAMP1 v3 Chiape... 32 1.7 3
(ES608497) MDLTEa0002I15f MDLTEa Musca domestica cDNA, mRNA ... 40 1.7 2
(FD682596) CBHX2241.fwd CBHX Mycosphaerella fijiensis MfEST4... 34 2.0 2
(FD682595) CBHX2241.rev CBHX Mycosphaerella fijiensis MfEST4... 34 2.0 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 2.2 11
(ES608323) MDLTEa0001L06f MDLTEa Musca domestica cDNA, mRNA ... 40 2.3 2
(ES608697) MDLTEa0003F02f MDLTEa Musca domestica cDNA, mRNA ... 40 2.4 2
(ES608564) MDLTEa0002N02f MDLTEa Musca domestica cDNA, mRNA ... 40 2.4 2
(ES608290) MDLTEa0001I17f MDLTEa Musca domestica cDNA, mRNA ... 40 2.4 2
(ES608683) MDLTEa0003E02f MDLTEa Musca domestica cDNA, mRNA ... 40 2.4 2
(ES608269) MDLTEa0001H03f MDLTEa Musca domestica cDNA, mRNA ... 40 2.4 2
(ES608459) MDLTEa0002F01f MDLTEa Musca domestica cDNA, mRNA ... 40 2.5 2
(ES608863) MDLTEa0003O24f MDLTEa Musca domestica cDNA, mRNA ... 40 2.5 2
(ES608360) MDLTEa0001N22f MDLTEa Musca domestica cDNA, mRNA ... 40 2.5 2
(ES608221) MDLTEa0001D06f MDLTEa Musca domestica cDNA, mRNA ... 40 2.5 2
(ES608305) MDLTEa0001J18f MDLTEa Musca domestica cDNA, mRNA ... 40 2.5 2
(ES608373) MDLTEa0001P02f MDLTEa Musca domestica cDNA, mRNA ... 40 2.5 2
(ES608503) MDLTEa0002I24f MDLTEa Musca domestica cDNA, mRNA ... 40 2.6 2
(ES608507) MDLTEa0002J07f MDLTEa Musca domestica cDNA, mRNA ... 40 2.6 2
(ES608417) MDLTEa0002B24f MDLTEa Musca domestica cDNA, mRNA ... 40 2.6 2
(ES608477) MDLTEa0002G20f MDLTEa Musca domestica cDNA, mRNA ... 40 2.6 2
(ES608552) MDLTEa0002M05f MDLTEa Musca domestica cDNA, mRNA ... 40 2.6 2
(ES608279) MDLTEa0001H16f MDLTEa Musca domestica cDNA, mRNA ... 40 2.6 2
(ES608773) MDLTEa0003J23f MDLTEa Musca domestica cDNA, mRNA ... 40 2.6 2
(ES608823) MDLTEa0003M19f MDLTEa Musca domestica cDNA, mRNA ... 40 2.6 2
(ES608733) MDLTEa0003H19f MDLTEa Musca domestica cDNA, mRNA ... 40 2.6 2
(ES608616) MDLTEa0003A07f MDLTEa Musca domestica cDNA, mRNA ... 40 2.7 2
(ES608306) MDLTEa0001J19f MDLTEa Musca domestica cDNA, mRNA ... 40 2.7 2
(AC163373) Bos taurus clone CH240-115B4, WORKING DRAFT SEQUE... 40 2.7 5
(ES608814) MDLTEa0003M06f MDLTEa Musca domestica cDNA, mRNA ... 40 2.7 2
(ES608594) MDLTEa0002O23f MDLTEa Musca domestica cDNA, mRNA ... 40 2.7 2
(ES608735) MDLTEa0003H21f MDLTEa Musca domestica cDNA, mRNA ... 40 2.7 2
(ES608628) MDLTEa0003A23f MDLTEa Musca domestica cDNA, mRNA ... 40 2.7 2
(ES608196) MDLTEa0001B13f MDLTEa Musca domestica cDNA, mRNA ... 40 2.8 2
(BX088688) Zebrafish DNA sequence from clone CH211-278F21 in... 46 2.9 1
(AC212600) Macaca mulatta BAC CH250-82N3 (Children's Hospit... 46 2.9 1
(CR382122) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 46 2.9 1
(AM483682) Vitis vinifera contig VV79X004810.2, whole genome... 46 2.9 1
(AM448495) Vitis vinifera, whole genome shotgun sequence, co... 46 2.9 1
(AL022098) Human DNA sequence from clone RP3-510L9 on chromo... 46 2.9 1
(AC106911) Rattus norvegicus clone CH230-31H20, *** SEQUENCI... 46 2.9 1
(CU467051) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.9 1
(AC173459) Sorex araneus clone SA_Ba-207L23, WORKING DRAFT S... 46 2.9 1
(AC173263) Bos taurus clone CH240-186M18, WORKING DRAFT SEQU... 46 2.9 1
(AC172005) Bos taurus clone CH240-305H18, WORKING DRAFT SEQU... 46 2.9 1
(AC169006) Sorex araneus clone SA_Ba-102E5, WORKING DRAFT SE... 46 2.9 1
(FI239516) CccaBb022-H13JR CccABb Cajanus cajan genomic clon... 46 2.9 1
(FI207266) CccaBa021-J1TR CccABa Cajanus cajan genomic clone... 46 2.9 1
(EK342531) 1095467067772 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.9 1
(EK090551) 1092961215404 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.9 1
(EK071048) 1092960192460 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.9 1
(EJ989476) 1093023036532 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.9 1
(EJ636180) 1092995301472 Global-Ocean-Sampling_GS-29-01-01-1... 46 2.9 1
(EJ549587) 1092959431499 Global-Ocean-Sampling_GS-29-01-01-1... 46 2.9 1
(EJ419431) 1093012220884 Global-Ocean-Sampling_GS-28-01-01-1... 46 2.9 1
(ED158129) AUAC-aat85e08.b1 Ascaris suum whole genome shotgu... 46 2.9 1
(DX511722) 643_6_14174350_16654_43641_008 Arachis duranensis... 46 2.9 1
(CZ920299) 1098415478895 CHORI-243 Ovis aries genomic clone ... 46 2.9 1
(CT412050) Sus scrofa genomic clone CH242-469E7, genomic sur... 46 2.9 1
(FF112477) CJAH-aaa78c10.b2 Caenorhabditis_japonica_CJAH1_ES... 46 2.9 1
(CT573071) Kuenenia stuttgartiensis genome fragment KUST_E (... 46 2.9 1
(CU464139) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.9 6
(BM614013) 17000687140693 A.Gam.ad.cDNA.blood1 Anopheles gam... 30 3.2 3
(BM642463) 17000687309936 A.Gam.ad.cDNA1 Anopheles gambiae c... 30 3.3 3
(CO377195) tah47c06.y1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 3.3 2
(AC189420) Brassica rapa subsp. pekinensis clone KBrB063K02,... 38 3.3 5
(CO377623) tah56a02.x1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 3.5 2
(CO377629) tah56b02.x1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 3.6 2
(CO510446) tah56b02.y1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 3.7 2
(BM647500) 17000687323956 A.Gam.ad.cDNA1 Anopheles gambiae c... 30 3.8 3
(AY123346) Musca domestica 16S ribosomal RNA gene, partial s... 40 3.8 2
(CO377481) tah48h10.y1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 3.9 2
(CO377534) tah49h10.y1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 4.0 2
(CO377334) tah49h10.x1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 4.0 2
(CO377268) tah48h10.x1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 4.0 2
(AE017197) Rickettsia typhi str. Wilmington complete genome. 36 4.2 14
(CO510441) tah56a02.y1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 4.2 2
(BM657646) 17000687437413 A.Gam.ad.cDNA1 Anopheles gambiae c... 30 4.2 3
(AC024405) Homo sapiens chromosome 11, clone RP11-574M7, com... 36 4.4 6
(CU862056) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 4.8 6
(CO376567) tah41g02.x1 Hydra EST -Kiel 5 Hydra magnipapillat... 40 4.9 2
(CU929697) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 4
(ET742703) CHO_OF249xp05f1.ab1 CHO_OF Nicotiana tabacum geno... 34 4.9 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 5.0 10
(BX927165) Zebrafish DNA sequence from clone DKEYP-120H9 in ... 32 5.4 6
(AY630340) Philaenus spumarius mitochondrion, complete genome. 44 5.6 4
(AC202339) Medicago truncatula clone mth2-189o4, WORKING DRA... 44 5.6 4
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 32 5.7 11
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 5.8 10
(ES723550) TFR6_33_B03_E001.g1 USDA-Tifton Peanut Library TF... 38 5.9 2
(AC021469) Homo sapiens chromosome 17 clone RP11-416K7 map 1... 38 6.1 4
(CZ824652) OC__Ba0204E12.r OC__Ba Oryza coarctata genomic cl... 38 6.5 2
(AL355983) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 6.9 5
(CU927933) Zebrafish DNA sequence from clone CH73-35H3 in li... 40 7.1 4
(DU831871) KBrS009C13R KBrS, Brassica rapa Sau3AI BAC librar... 36 7.2 2
(ER610432) 1093016306287 Global-Ocean-Sampling_GS-36-01-01-2... 34 7.3 2
(AM875979) Venerupis (Ruditapes) philippinarum EST, 5' end s... 34 7.3 2
(DJ386701) Diagnosis of Diseases Associated with Metastasis. 40 7.7 3
(AX281497) Sequence 161 from Patent WO0177376. 40 7.7 3
(DT618784) ACAH-aaa86h10.g1 Hydra_EST_UCI-10 Hydra magnipapi... 40 8.2 2
(AL732538) Mouse DNA sequence from clone RP23-242O9 on chrom... 40 8.2 3
(AC090916) Homo sapiens chromosome 18, clone RP11-862C6, com... 34 8.3 9
(DX285925) OR_ABa0187H24.r OR_ABa Oryza ridleyi genomic clon... 36 8.3 2
(AL592156) Human DNA sequence from clone RP11-492O8 on chrom... 40 8.5 4
(CR626904) Zebrafish DNA sequence from clone DKEY-53D10 in l... 44 9.1 5
(FH201450) CHO_OF3080xn09r1.ab1 CHO_OF3 Nicotiana tabacum ge... 34 9.2 2
(AM637986) Entamoeba dispar GSS, clone dispar49c12.q1k. 36 9.4 2
(AC173560) Strongylocentrotus purpuratus clone R3-16N1, WORK... 36 9.6 6
(CR769774) Zebrafish DNA sequence from clone DKEY-149I17 in ... 38 9.8 8
(AC114334) Canis lupus familiaris clone RP81-77C11, WORKING ... 36 9.8 7
(FH702955) CHO_OF5165xg22f1.ab1 CHO_OF5 Nicotiana tabacum ge... 34 9.9 2
>(C84680) Dictyostelium discoideum slug cDNA, clone SSD413.
Length = 478
Score = 729 bits (368), Expect = 0.0
Identities = 370/371 (99%)
Strand = Plus / Plus
Query: 707 ttagtttcagcaaattcttctataccatcaccttcaaatgttttaaatattggtaataat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 ttagtttcagcaaattcttctataccatcaccttcaaatgttttaaatattggtaataat 137
Query: 767 tttgatagtttttcaaatgattcaattttaagtttgtacagtccttccaatttctcaaca 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tttgatagtttttcaaatgattcaattttaagtttgtacagtccttccaatttctcaaca 197
Query: 827 ccacaaaactcacccgcagtaaatttgaaacttttggaaattaaatctttaaagaaatat 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ccacaaaactcacccgcagtaaatttgaaacttttggaaattaaatctttaaagaaatat 257
Query: 887 aatgcatatcatagactaaaggtatcacactctccatcaagaacagagttggtttcagca 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aatgcatatcatagactaaaggtatcacactctccatcaagaacagagttggtttcagca 317
Query: 947 gttattcatcatttttcacaccaaaatattgatgaagatacaattattacttcattttta 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gttattcatcatttttcacaccaaaatattgatgaagatacaattattacttcattttta 377
Query: 1007 aagagagtaaaaagtgaatcctcaaggataagacaattagaaaaggtttaaatctttatt 1066
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 aagagagtaaaaagtgaatcctcaaggataanacaattagaaaaggtttaaatctttatt 437
Query: 1067 tttcaaattat 1077
|||||||||||
Sbjct: 438 tttcaaattat 448
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,309,756,315
Number of extensions: 86574728
Number of successful extensions: 8290824
Number of sequences better than 10.0: 150
Length of query: 1106
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1082
Effective length of database: 99,340,224,878
Effective search space: 107486123317996
Effective search space used: 107486123317996
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.18 |
| Homology vs Protein |
Query= Contig-U01636-1 (Contig-U01636-1Q) /CSM_Contig/Contig-U01636-1Q.Seq.d
(1106 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
JC6093(JC6093) dead ringer nuclear protein - fruit fly (Drosophi... 100 2e-19
(Q24573) RecName: Full=Protein dead ringer; AltName: Full=Protei... 100 2e-19
AE013599_3869(AE013599|pid:none) Drosophila melanogaster chromos... 100 2e-19
(Q8MQH7) RecName: Full=Protein dead ringer homolog; AltName: Ful... 99 3e-19
FN357338_18(FN357338|pid:none) Schistosoma mansoni genome sequen... 98 5e-19
(Q5XGD9) RecName: Full=AT-rich interactive domain-containing pro... 94 1e-17
(Q8IVW6) RecName: Full=AT-rich interactive domain-containing pro... 94 1e-17
(Q6GQD7) RecName: Full=AT-rich interactive domain-containing pro... 94 1e-17
AK298716_1(AK298716|pid:none) Homo sapiens cDNA FLJ61335 complet... 94 1e-17
AK302034_1(AK302034|pid:none) Homo sapiens cDNA FLJ57821 complet... 94 1e-17
(A6NKF2) RecName: Full=AT-rich interactive domain-containing pro... 92 2e-17
BC145563_1(BC145563|pid:none) Mus musculus AT rich interactive d... 92 2e-17
AL807796_6(AL807796|pid:none) Mouse DNA sequence from clone RP23... 92 2e-17
(Q62431) RecName: Full=AT-rich interactive domain-containing pro... 92 3e-17
BC168846_1(BC168846|pid:none) Rattus norvegicus AT rich interact... 92 3e-17
BC050925_1(BC050925|pid:none) Mus musculus AT rich interactive d... 92 3e-17
AY152547_1(AY152547|pid:none) Homo sapiens E2F binding protein (... 92 3e-17
AC005391_1(AC005391|pid:none) Homo sapiens chromosome 19, cosmid... 92 3e-17
BC106445_1(BC106445|pid:none) Xenopus laevis hypothetical protei... 92 4e-17
BC060828_1(BC060828|pid:none) Homo sapiens AT rich interactive d... 91 9e-17
BC158206_1(BC158206|pid:none) Danio rerio cDNA clone IMAGE:67935... 89 3e-16
T25159(T25159)hypothetical protein T23D8.8 - Caenorhabditis eleg... 82 3e-14
I58383(I58383;I58390;I78883;S16953;B42997) retinoblastoma bindin... 78 6e-13
AJ720708_1(AJ720708|pid:none) Gallus gallus mRNA for hypothetica... 77 8e-13
DQ066931_1(DQ066931|pid:none) Gallus gallus retinoblastoma-bindi... 77 8e-13
(P29374) RecName: Full=AT-rich interactive domain-containing pro... 77 1e-12
BC172363_1(BC172363|pid:none) Synthetic construct Homo sapiens c... 77 1e-12
CR848405_1(CR848405|pid:none) Xenopus tropicalis finished cDNA, ... 77 1e-12
BC026230_1(BC026230|pid:none) Homo sapiens AT rich interactive d... 75 3e-12
(Q3SWY1) RecName: Full=AT-rich interactive domain-containing pro... 75 4e-12
BC048031_1(BC048031|pid:none) Danio rerio zgc:110391, mRNA (cDNA... 75 4e-12
BC081540_1(BC081540|pid:none) Danio rerio zgc:110391, mRNA (cDNA... 75 4e-12
BC100008_1(BC100008|pid:none) Danio rerio zgc:110391, mRNA (cDNA... 75 4e-12
BC160195_1(BC160195|pid:none) Synthetic construct Mus musculus c... 75 5e-12
AK050594_1(AK050594|pid:none) Mus musculus 2 days neonate thymus... 75 5e-12
BC158109_1(BC158109|pid:none) Mus musculus AT rich interactive d... 75 5e-12
BC058209_1(BC058209|pid:none) Mus musculus AT rich interactive d... 75 5e-12
BC062536_1(BC062536|pid:none) Homo sapiens AT rich interactive d... 74 7e-12
AK150170_1(AK150170|pid:none) Mus musculus bone marrow macrophag... 74 7e-12
BC048959_1(BC048959|pid:none) Homo sapiens AT rich interactive d... 74 9e-12
AK041414_1(AK041414|pid:none) Mus musculus 3 days neonate thymus... 74 9e-12
CT025604_3(CT025604|pid:none) Mouse DNA sequence from clone RP23... 74 9e-12
BC130418_1(BC130418|pid:none) Homo sapiens AT rich interactive d... 74 9e-12
AK031062_1(AK031062|pid:none) Mus musculus 13 days embryo foreli... 74 9e-12
AL133418_7(AL133418|pid:none) Human DNA sequence from clone RP5-... 74 9e-12
AF208045_1(AF208045|pid:none) Homo sapiens breast cancer-associa... 74 9e-12
AF214114_1(AF214114|pid:none) Homo sapiens retinoblastoma-bindin... 74 9e-12
(A2CG63) RecName: Full=AT-rich interactive domain-containing pro... 74 9e-12
AL391994_4(AL391994|pid:none) Human DNA sequence from clone RP11... 74 9e-12
BC151790_1(BC151790|pid:none) Bos taurus AT rich interactive dom... 74 9e-12
AY220790_1(AY220790|pid:none) Homo sapiens SIN3A-associated prot... 74 9e-12
BC025436_1(BC025436|pid:none) Mus musculus AT rich interactive d... 74 9e-12
AK149839_1(AK149839|pid:none) Mus musculus bone marrow macrophag... 73 2e-11
CR848439_1(CR848439|pid:none) Xenopus tropicalis finished cDNA, ... 73 2e-11
(Q8R2W1) RecName: Full=AT-rich interactive domain-containing pro... 73 2e-11
AK157607_1(AK157607|pid:none) Mus musculus activated spleen cDNA... 73 2e-11
(Q03989) RecName: Full=AT-rich interactive domain-containing pro... 73 2e-11
M62324_1(M62324|pid:none) Human modulator recognition factor I (... 73 2e-11
AY810127_1(AY810127|pid:none) Schistosoma japonicum SJCHGC07200 ... 72 3e-11
(Q5ZJ69) RecName: Full=AT-rich interactive domain-containing pro... 71 6e-11
BC107800_1(BC107800|pid:none) Homo sapiens AT rich interactive d... 70 1e-10
AL671972_2(AL671972|pid:none) Human DNA sequence from clone RP11... 70 1e-10
CR857062_1(CR857062|pid:none) Pongo abelii mRNA; cDNA DKFZp469H1... 70 1e-10
AF169968_1(AF169968|pid:none) Mus musculus DNA binding protein D... 70 2e-10
AF401550_1(AF401550|pid:none) Mus musculus modulator recognition... 70 2e-10
(Q8BM75) RecName: Full=AT-rich interactive domain-containing pro... 70 2e-10
AL049820_4(AL049820|pid:none) Human DNA sequence from clone RP1-... 68 5e-10
AF468300_1(AF468300|pid:none) Homo sapiens BRG1-binding protein ... 68 5e-10
AF259792_1(AF259792|pid:none) Homo sapiens p250R mRNA, complete ... 68 5e-10
BX649499_2(BX649499|pid:none) Zebrafish DNA sequence from clone ... 68 5e-10
(Q8NFD5) RecName: Full=AT-rich interactive domain-containing pro... 68 5e-10
AF521671_1(AF521671|pid:none) Homo sapiens SWI/SNF chromatin rem... 68 5e-10
AL049820_1(AL049820|pid:none) Human DNA sequence from clone RP1-... 68 7e-10
AJ005202_1(AJ005202|pid:none) Rattus rattus mRNA for 6A3-5 prote... 68 7e-10
AY662692_1(AY662692|pid:none) Sus scrofa 6A3-5 protein mRNA, com... 67 9e-10
DQ096628_1(DQ096628|pid:none) Homo sapiens zipzap protein mRNA, ... 66 2e-09
AK007269_1(AK007269|pid:none) Mus musculus adult male testis cDN... 66 2e-09
AY727870_1(AY727870|pid:none) Homo sapiens ARID2 (ARID2) mRNA, p... 66 2e-09
CR382129_611(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 64 7e-09
AM428484_2(AM428484|pid:none) Vitis vinifera contig VV78X050883.... 63 2e-08
CR749833_1(CR749833|pid:none) Homo sapiens mRNA; cDNA DKFZp779P0... 62 3e-08
AC146329_3(AC146329|pid:none) Medicago truncatula clone mth2-5i2... 62 3e-08
FN357297_78(FN357297|pid:none) Schistosoma mansoni genome sequen... 62 4e-08
EF085512_1(EF085512|pid:none) Picea sitchensis clone WS02722_H17... 62 4e-08
AE014298_2904(AE014298|pid:none) Drosophila melanogaster chromos... 60 1e-07
AE014298_2903(AE014298|pid:none) Drosophila melanogaster chromos... 60 1e-07
AC009978_4(AC009978|pid:none) Genomic sequence for Arabidopsis t... 59 2e-07
AM465860_1(AM465860|pid:none) Vitis vinifera contig VV78X160004.... 59 2e-07
BT064738_1(BT064738|pid:none) Zea mays full-length cDNA clone ZM... 58 5e-07
AC122723_8(AC122723|pid:none) Medicago truncatula clone mth2-5i1... 57 9e-07
FM992688_536(FM992688|pid:none) Candida dubliniensis CD36 chromo... 57 9e-07
FN392320_25(FN392320|pid:none) Pichia pastoris GS115 chromosome ... 57 9e-07
AK162717_1(AK162717|pid:none) Mus musculus 6 days neonate skin c... 57 2e-06
AB493433_1(AB493433|pid:none) Arabidopsis thaliana At1g04880 mRN... 56 3e-06
AF053091_1(AF053091|pid:none) Drosophila melanogaster eyelid (el... 56 3e-06
(Q8IN94) RecName: Full=Trithorax group protein osa; AltName: Ful... 56 3e-06
BT050586_1(BT050586|pid:none) Drosophila melanogaster LD42748 fu... 56 3e-06
AE014297_2482(AE014297|pid:none) Drosophila melanogaster chromos... 56 3e-06
CR382136_99(CR382136|pid:none) Debaryomyces hansenii strain CBS7... 55 3e-06
AB024034_17(AB024034|pid:none) Arabidopsis thaliana genomic DNA,... 54 8e-06
AB209999_1(AB209999|pid:none) Homo sapiens mRNA for JARID1A vari... 54 1e-05
(Q3UXZ9) RecName: Full=Histone demethylase JARID1A; EC=... 54 1e-05
BC010717_1(BC010717|pid:none) Mus musculus jumonji, AT rich inte... 54 1e-05
AF268912_1(AF268912|pid:none) Mus musculus Osa1 nuclear protein ... 54 1e-05
BC048307_1(BC048307|pid:none) Homo sapiens jumonji, AT rich inte... 54 1e-05
(P29375) RecName: Full=Histone demethylase JARID1A; EC=... 54 1e-05
BC099835_1(BC099835|pid:none) Rattus norvegicus jumonji, AT rich... 54 1e-05
BC156461_1(BC156461|pid:none) Synthetic construct Homo sapiens c... 54 1e-05
FN357482_6(FN357482|pid:none) Schistosoma mansoni genome sequenc... 52 3e-05
AB384378_1(AB384378|pid:none) Synthetic construct DNA, clone: pF... 52 4e-05
(O74365) RecName: Full=SWI/SNF chromatin-remodeling complex subu... 52 4e-05
AB051293_1(AB051293|pid:none) Homo sapiens mRNA for SWI related ... 52 4e-05
AB210022_1(AB210022|pid:none) Homo sapiens mRNA for ARID1A varia... 52 4e-05
AF268913_1(AF268913|pid:none) Homo sapiens OSA1 nuclear protein ... 52 4e-05
AF521670_1(AF521670|pid:none) Homo sapiens SWI/SNF chromatin rem... 52 4e-05
AL034380_13(AL034380|pid:none) Human DNA sequence from clone RP1... 52 4e-05
AB024075_1(AB024075|pid:none) Homo sapiens gene for B120, comple... 52 4e-05
AF219114_1(AF219114|pid:none) Homo sapiens chromatin remodelling... 52 5e-05
AF231056_1(AF231056|pid:none) Homo sapiens BRG1-Associated Facto... 52 5e-05
AB001895_1(AB001895|pid:none) Homo sapiens mRNA for B120, comple... 52 5e-05
DQ888039_1(DQ888039|pid:none) Giardia intestinalis ARID1 gene, c... 51 8e-05
AP007162_455(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 51 8e-05
AK304027_1(AK304027|pid:none) Homo sapiens cDNA FLJ61048 complet... 51 8e-05
CR858238_1(CR858238|pid:none) Pongo abelii mRNA; cDNA DKFZp469B0... 51 8e-05
BC144102_1(BC144102|pid:none) Homo sapiens jumonji, AT rich inte... 51 8e-05
U52191_1(U52191|pid:none) Human SMCY (H-Y) mRNA, complete cds. 51 8e-05
(Q5XUN4) RecName: Full=Histone demethylase JARID1D; EC=... 51 8e-05
S57162_1(S57162|pid:none) Homo sapiens retinoblastoma binding pr... 50 1e-04
S57160_1(S57160|pid:none) RBP1=retinoblastoma binding protein 1 ... 50 1e-04
CT027837_1(CT027837|pid:none) Zebrafish DNA sequence from clone ... 50 1e-04
T48727(T48727)retinoblastoma binding protein 2 related protein [... 50 1e-04
AM270207_3(AM270207|pid:none) Aspergillus niger contig An09c0180... 50 1e-04
CU928181_295(CU928181|pid:none) Zygosaccharomyces rouxii strain ... 50 1e-04
CR382123_701(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 50 2e-04
U52364_1(U52364|pid:none) Equus caballus SMCY mRNA, partial cds. 50 2e-04
AP008216_420(AP008216|pid:none) Oryza sativa (japonica cultivar-... 49 2e-04
CR628365_4(CR628365|pid:none) Zebrafish DNA sequence from clone ... 49 2e-04
EF613277_1(EF613277|pid:none) Homo sapiens JARID1C protein (JARI... 49 3e-04
I54361(I54361;I38235) SMCX protein - human &L25270_1(L25270|pid... 49 3e-04
(Q38JA7) RecName: Full=Histone demethylase JARID1C; EC=... 49 3e-04
AK140971_1(AK140971|pid:none) Mus musculus 16 days embryo head c... 49 3e-04
(Q9VMJ7) RecName: Full=Histone demethylase lid; EC=1.14... 49 3e-04
BT012454_1(BT012454|pid:none) Drosophila melanogaster RE64461 fu... 49 3e-04
AL139396_5(AL139396|pid:none) Human DNA sequence from clone RP11... 49 3e-04
AE013599_172(AE013599|pid:none) Drosophila melanogaster chromoso... 49 3e-04
FN357489_18(FN357489|pid:none) Schistosoma mansoni genome sequen... 48 5e-04
BT083759_1(BT083759|pid:none) Zea mays full-length cDNA clone ZM... 48 5e-04
(Q5F3R2) RecName: Full=Histone demethylase JARID1B; EC=... 48 7e-04
AF127245_1(AF127245|pid:none) Mus musculus Smcx (Smcx) mRNA, com... 47 0.001
BX322655_2(BX322655|pid:none) Zebrafish DNA sequence from clone ... 47 0.001
(Q30DN6) RecName: Full=Histone demethylase JARID1D; EC=... 47 0.001
BC026777_1(BC026777|pid:none) Mus musculus jumonji, AT rich inte... 47 0.001
AK158340_1(AK158340|pid:none) Mus musculus adult inner ear cDNA,... 47 0.001
BC038940_1(BC038940|pid:none) Mus musculus jumonji, AT rich inte... 47 0.001
I48775(I48775;S44139) Smcx protein (escapes X-chromosome inactiv... 47 0.001
AK155651_1(AK155651|pid:none) Mus musculus B6-derived CD11 +ve d... 47 0.001
AK156622_1(AK156622|pid:none) Mus musculus activated spleen cDNA... 47 0.001
EU559710_1(EU559710|pid:none) Lotus japonicus ARID/BRIGHT DNA bi... 47 0.001
AB493470_1(AB493470|pid:none) Arabidopsis thaliana At1g20910 mRN... 47 0.002
AB441820_1(AB441820|pid:none) Tokudaia osimensis JARID1D gene fo... 47 0.002
AC131026_17(AC131026|pid:none) Medicago truncatula clone mth2-6e... 46 0.002
BT062755_1(BT062755|pid:none) Zea mays full-length cDNA clone ZM... 46 0.002
(Q7PXY4) RecName: Full=Histone deacetylase complex subunit SAP30... 46 0.003
AK304566_1(AK304566|pid:none) Homo sapiens cDNA FLJ55425 complet... 45 0.003
AM270015_44(AM270015|pid:none) Aspergillus niger contig An02c020... 45 0.005
AK155279_1(AK155279|pid:none) Mus musculus NOD-derived CD11c +ve... 45 0.005
CU633895_406(CU633895|pid:none) Podospora anserina genomic DNA c... 45 0.005
CU928180_143(CU928180|pid:none) Kluyveromyces thermotolerans str... 45 0.005
I48776(I48776;S44140) spermatogenesis related protein Smcy [impo... 44 0.008
BT040282_1(BT040282|pid:none) Zea mays full-length cDNA clone ZM... 44 0.008
BT059775_1(BT059775|pid:none) Salmo salar clone ssal-rgf-505-012... 44 0.010
(Q17Q39) RecName: Full=Histone deacetylase complex subunit SAP30... 44 0.013
FB801940_1(FB801940|pid:none) Sequence 21213 from Patent WO20080... 44 0.013
CP000581_393(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 43 0.017
BC161510_1(BC161510|pid:none) Xenopus tropicalis hypothetical pr... 43 0.023
AK230281_1(AK230281|pid:none) Arabidopsis thaliana mRNA for hypo... 43 0.023
AP007155_598(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 42 0.030
(Q9UGL1) RecName: Full=Histone demethylase JARID1B; EC=... 42 0.030
AJ243706_1(AJ243706|pid:none) Homo sapiens mRNA for RB-binding p... 42 0.030
AJ132440_1(AJ132440|pid:none) Homo sapiens mRNA for PLU-1 protei... 42 0.030
AP004165_13(AP004165|pid:none) Oryza sativa Japonica Group genom... 42 0.030
AY082429_1(AY082429|pid:none) Mus musculus PLU1 (Plu1) mRNA, com... 42 0.030
AK220451_1(AK220451|pid:none) Mus musculus mRNA for mKIAA4034 pr... 42 0.030
AY089499_1(AY089499|pid:none) Drosophila melanogaster GH09982 fu... 42 0.039
(Q9HAJ7) RecName: Full=Histone deacetylase complex subunit SAP30... 42 0.050
AP008214_1196(AP008214|pid:none) Oryza sativa (japonica cultivar... 41 0.066
BC094930_1(BC094930|pid:none) Mus musculus SAP30-like, mRNA (cDN... 41 0.066
BC084217_1(BC084217|pid:none) Xenopus laevis hypothetical LOC495... 41 0.086
BC115758_1(BC115758|pid:none) Mus musculus jumonji, AT rich inte... 41 0.086
CR954201_364(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 40 0.11
(Q61T02) RecName: Full=Histone demethylase rbr-2; EC=1.... 40 0.15
AF286030_1(AF286030|pid:none) Ustilago maydis regulator Ustilago... 40 0.15
AF542528_28(AF542528|pid:none) Cryptococcus neoformans var. grub... 40 0.19
AK303610_1(AK303610|pid:none) Homo sapiens cDNA FLJ53263 complet... 40 0.19
(Q92833) RecName: Full=Protein Jumonji; AltName: Full=Jumonji/AR... 40 0.19
AC025808_5(AC025808|pid:none) Genomic sequence for Arabidopsis t... 39 0.25
AK176354_1(AK176354|pid:none) Arabidopsis thaliana mRNA, complet... 39 0.25
BT041931_1(BT041931|pid:none) Zea mays full-length cDNA clone ZM... 39 0.33
AK073058_1(AK073058|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.33
BT086290_1(BT086290|pid:none) Zea mays full-length cDNA clone ZM... 39 0.33
AM920428_965(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 39 0.33
AJ851787_1(AJ851787|pid:none) Gallus gallus mRNA for hypothetica... 39 0.43
AC093093_17(AC093093|pid:none) Oryza sativa chromosome 10 BAC OS... 38 0.56
AY710429_16(AY710429|pid:none) Cryptococcus gattii strain E566 M... 38 0.56
AC099402_13(AC099402|pid:none) Oryza sativa chromosome 10 clone ... 38 0.56
BT069418_1(BT069418|pid:none) Zea mays full-length cDNA clone ZM... 38 0.56
AY303940_1(AY303940|pid:none) Pichia angusta global transcriptio... 38 0.73
T27924(T27924)hypothetical protein ZK593.4 - Caenorhabditis eleg... 38 0.73
AM424525_1(AM424525|pid:none) Vitis vinifera contig VV78X183972.... 38 0.73
AC008047_14(AC008047|pid:none) Genomic sequence for Arabidopsis ... 38 0.73
AE014297_2715(AE014297|pid:none) Drosophila melanogaster chromos... 37 0.95
AL050399_2(AL050399|pid:none) Arabidopsis thaliana DNA chromosom... 37 1.2
AC183502_10(AC183502|pid:none) Medicago truncatula clone mth2-75... 37 1.2
CP001263_32(CP001263|pid:none) Borrelia burgdorferi 156a plasmid... 37 1.2
(A1YVX4) RecName: Full=Histone demethylase JARID1C; EC=... 37 1.2
AC116984_202(AC116984|pid:none) Dictyostelium discoideum chromos... 37 1.2
AC024744_4(AC024744|pid:none) Caenorhabditis elegans cosmid Y108... 37 1.6
AF542529_27(AF542529|pid:none) Cryptococcus neoformans var. grub... 37 1.6
AK301150_1(AK301150|pid:none) Homo sapiens cDNA FLJ50247 partial... 37 1.6
AY710430_8(AY710430|pid:none) Cryptococcus gattii strain WM276 M... 36 2.8
AF542530_14(AF542530|pid:none) Cryptococcus neoformans var. neof... 36 2.8
BC043096_1(BC043096|pid:none) Mus musculus jumonji, AT rich inte... 35 3.6
AE017344_579(AE017344|pid:none) Cryptococcus neoformans var. neo... 35 3.6
AM452448_1(AM452448|pid:none) Vitis vinifera contig VV78X230125.... 35 3.6
BT010580_1(BT010580|pid:none) Arabidopsis thaliana At3g43240 mRN... 35 3.6
CP000498_23(CP000498|pid:none) Pichia stipitis CBS 6054 chromoso... 35 3.6
CP001575_39(CP001575|pid:none) Micromonas sp. RCC299 chromosome ... 35 4.7
BX842609_1(BX842609|pid:none) Zebrafish DNA sequence from clone ... 35 6.2
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso... 35 6.2
AE015450_260(AE015450|pid:none) Mycoplasma gallisepticum strain ... 35 6.2
(Q6YQC6) RecName: Full=Trigger factor; Short=TF; &AP00... 35 6.2
(Q23541) RecName: Full=Histone demethylase rbr-2; EC=1.... 34 8.1
(Q7V027) RecName: Full=NADPH-dependent 7-cyano-7-deazaguanine re... 34 8.1
>JC6093(JC6093) dead ringer nuclear protein - fruit fly (Drosophila
melanogaster) &U62542_1(U62542|pid:none)
Length = 901
Score = 99.8 bits (247), Expect = 2e-19
Identities = 57/146 (39%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Frame = +2
Query: 158 DDAEEKRFISNLFYFMTQRGTPIXKIPIFDHKELNLYKLYNCVISRGGLEAVIDNKLWRQ 337
DD + K F+ +LF FM +RGTPI ++PI L+LY+LYN VI+RGGL VI+ KLW++
Sbjct: 280 DDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQE 339
Query: 338 ITTDLAVDPERTDAGFRLRIHYLKYLYPYERKHYLKIEDDEQFDYEAFEKHLSKSPADKK 517
I L + T A F LR Y+KYLYPYE EK +PA+ +
Sbjct: 340 IIKGLHLPSSITSAAFTLRTQYMKYLYPYE-----------------CEKKNLSTPAELQ 382
Query: 518 TSIS---RKKKQQLQNHYNHPSNQIP 586
+I R+ ++ Y NQ+P
Sbjct: 383 AAIDGNRREGRRSSYGQYEAMHNQMP 408
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,316,166,845
Number of extensions: 23327889
Number of successful extensions: 79365
Number of sequences better than 10.0: 233
Number of HSP's gapped: 78998
Number of HSP's successfully gapped: 233
Length of query: 368
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 238
Effective length of database: 630,428,194
Effective search space: 150041910172
Effective search space used: 150041910172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
2 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |