Contig-U10137-1 |
Contig ID |
Contig-U10137-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1429 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
1737693 |
End point |
1739123 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
6 |
Number of EST |
10 |
Link to clone list |
U10137 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.18 |
Homology vs DNA |
Query= Contig-U10137-1 (Contig-U10137-1Q) /CSM_Contig/Contig-U10137-1Q.Seq.d (1429 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ400781) Dictyostelium discoideum cDNA clone:dds14c23, 3' ... 1219 0.0 1 (BJ413072) Dictyostelium discoideum cDNA clone:ddv14h02, 5' ... 1130 0.0 3 (BJ391037) Dictyostelium discoideum cDNA clone:dds14c23, 5' ... 1122 0.0 1 (BJ411923) Dictyostelium discoideum cDNA clone:ddv6g10, 5' e... 1110 0.0 1 (BJ433510) Dictyostelium discoideum cDNA clone:ddv22i03, 3' ... 987 0.0 2 (BJ431410) Dictyostelium discoideum cDNA clone:ddv14h02, 3' ... 987 0.0 2 (BJ399729) Dictyostelium discoideum cDNA clone:dds7p04, 3' e... 987 0.0 2 (BJ430173) Dictyostelium discoideum cDNA clone:ddv6g10, 3' e... 979 0.0 2 (BJ347213) Dictyostelium discoideum cDNA clone:dda26n09, 3' ... 979 0.0 2 (BJ415296) Dictyostelium discoideum cDNA clone:ddv22i03, 5' ... 995 0.0 1 (BJ329830) Dictyostelium discoideum cDNA clone:dda26n09, 5' ... 878 0.0 3 (BJ387975) Dictyostelium discoideum cDNA clone:dds7p04, 5' e... 496 e-135 1 (BJ398787) Dictyostelium discoideum cDNA clone:dds2b10, 3' e... 182 2e-41 1 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 56 5e-07 12 (AL844509) Plasmodium falciparum chromosome 13. 48 4e-06 9 (AE001384) Plasmodium falciparum 3D7 chromosome 2 section 21... 46 7e-06 4 (CR382401) Plasmodium falciparum chromosome 6, complete sequ... 42 2e-05 19 (AC178448) Strongylocentrotus purpuratus clone R3-1118G21, W... 46 5e-05 7 (AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 46 6e-05 15 (AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 2e-04 14 (AC115581) Dictyostelium discoideum chromosome 2 map complem... 48 2e-04 7 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 52 4e-04 9 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 56 9e-04 9 (EX835152) CBNB4940.fwd CBNB Phycomyces blakesleeanus NRRL15... 54 0.001 2 (BM294064) jh_50671.z1 Penaeus chinensis' cephalothorax cDNA... 58 0.001 1 (AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 50 0.001 15 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 50 0.001 11 (CU861474) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.002 9 (AC213924) Populus trichocarpa clone POP042-A21, complete se... 38 0.002 9 (AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 50 0.002 3 (CR762436) Zebrafish DNA sequence from clone DKEY-261M9. 40 0.002 10 (AC182671) Populus trichocarpa clone Pop1-24F1, complete seq... 38 0.003 8 (BX950859) Zebrafish DNA sequence from clone CH211-134M1 in ... 48 0.003 4 (AC168386) Strongylocentrotus purpuratus clone R3-4013A3, WO... 42 0.003 5 (CR847928) Zebrafish DNA sequence from clone DKEYP-67E7 in l... 56 0.004 1 (CQ595565) Sequence 23323 from Patent WO0171042. 56 0.004 1 (AR524020) Sequence 28980 from patent US 6703491. 56 0.004 1 (AR508127) Sequence 13087 from patent US 6703491. 56 0.004 1 (AE013599) Drosophila melanogaster chromosome 2R, complete s... 56 0.004 1 (AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 56 0.004 1 (AC007054) Drosophila melanogaster, chromosome 2R, region 41... 56 0.004 1 (AC141791) Apis mellifera clone CH224-59E3, WORKING DRAFT SE... 56 0.004 1 (AC120208) Canis familiaris clone RP81-61N24, WORKING DRAFT ... 56 0.004 1 (AC120206) Canis familiaris clone RP81-219C14, WORKING DRAFT... 56 0.004 1 (AC188537) Canis lupus familiaris chromosome 31 clone XX-364... 56 0.004 1 (AC176748) Strongylocentrotus purpuratus clone R3-3097G9, WO... 56 0.004 1 (AC017137) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 56 0.004 1 (FH612397) CHO_OF4937xk19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 56 0.004 1 (EJ463357) 1095383000298 Global-Ocean-Sampling_GS-28-01-01-1... 56 0.004 1 (ED121292) AUAC-aal24h11.b1 Ascaris suum whole genome shotgu... 56 0.004 1 (EC198638) 185740 CK01 Drosophila melanogaster cDNA clone 17... 56 0.004 1 (DW282483) UI-S-HH0-adj-j-11-0-UI.s1 UI-S-HH0 Euprymna scolo... 56 0.004 1 (AU268347) Dictyostelium discoideum vegetative cDNA clone:VS... 56 0.004 1 (AU268346) Dictyostelium discoideum vegetative cDNA clone:VS... 56 0.004 1 (CO321119) EK290339.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 56 0.004 1 (CO278195) EK129313.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 56 0.004 1 (AC114258) Dictyostelium discoideum chromosome 2 map complem... 40 0.004 7 (BZ316872) ia77f09.b1 WGS-ZmaysF (JM107 adapted methyl filte... 54 0.005 2 (AG601304) Mus musculus molossinus DNA, clone:MSMg01-533F20.... 54 0.005 2 (CG324073) OGVCT01TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 54 0.005 2 (AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 44 0.006 8 (CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 36 0.006 22 (AC161241) Medicago truncatula clone mth2-193c3, complete se... 38 0.006 9 (EY324829) CAWY10532.rev CAWY Helobdella robusta Subtracted ... 54 0.006 2 (AX345916) Sequence 987 from Patent WO0200928. 36 0.006 6 (AM434438) Vitis vinifera contig VV78X055195.11, whole genom... 36 0.008 5 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 40 0.008 10 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 46 0.012 8 (AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 46 0.012 12 (DH139579) Oryzias latipes Fosmid clone:GOLWFno401_o07, forw... 48 0.013 2 (DX990333) CHORI103-11E14.TV CHORI103 Schistosoma mansoni ge... 44 0.013 2 (AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 50 0.013 14 (AC116919) Dictyostelium discoideum chromosome 2 map complem... 50 0.014 6 (CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 38 0.014 21 (AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 38 0.014 12 (AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 50 0.014 11 (AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 44 0.014 12 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 54 0.015 13 (AL844506) Plasmodium falciparum chromosome 7. 48 0.015 12 (CR385035) Zebrafish DNA sequence from clone DKEY-182I1 in l... 54 0.015 1 (BX927112) Zebrafish DNA sequence from clone DKEY-109M11 in ... 54 0.015 1 (AL954383) Zebrafish DNA sequence from clone CH211-226M11 in... 54 0.015 1 (AL935289) Zebrafish DNA sequence from clone CH211-232C12. 54 0.015 1 (AL928986) Mouse DNA sequence from clone RP23-477P12 on chro... 54 0.015 1 (AL844139) Mouse DNA sequence from clone RP23-21G2 on chromo... 54 0.015 1 (AP009604) Solanum lycopersicum DNA, chromosome 8, clone: C0... 54 0.015 1 (AP006130) Lotus japonicus genomic DNA, chromosome 3, clone:... 54 0.015 1 (AC182680) Populus trichocarpa clone Pop1-30O8, complete seq... 54 0.015 1 (FM162572) Trypanosoma brucei Lister 427 surface glycoprotei... 54 0.015 1 (AY170439) Dictyostelium discoideum mitochondrial DNA polyme... 54 0.015 1 (AY160094) Dictyostelium discoideum nucleotide exchange fact... 54 0.015 1 (AF088979) Dictyostelium discoideum beige protein homolog (l... 54 0.015 1 (AE001425) Plasmodium falciparum 3D7 chromosome 2 section 62... 54 0.015 1 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 54 0.015 1 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 54 0.015 1 (AC141794) Apis mellifera clone CH224-60D2, WORKING DRAFT SE... 54 0.015 1 (AC136579) Rattus norvegicus clone CH230-11I20, WORKING DRAF... 54 0.015 1 (AC131125) Rattus norvegicus clone CH230-4G22, WORKING DRAFT... 54 0.015 1 (AC128506) Rattus norvegicus clone CH230-33B7, *** SEQUENCIN... 54 0.015 1 (AC126636) Rattus norvegicus clone CH230-50A17, WORKING DRAF... 54 0.015 1
>(BJ400781) Dictyostelium discoideum cDNA clone:dds14c23, 3' end, single read. Length = 729
Score = 1219 bits (615), Expect = 0.0 Identities = 618/619 (99%) Strand = Plus / Minus
Query: 744 ctatggaatcacctggtttccctacattagagagttatcctttaaatcaagttatcacat 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 623 ctatggaatcacctggtttccctacattagagagttatcctttaaatcaagttatcacat 564
Query: 804 atcgtttctttaatggtcgtttatcagttttcaatggtcaatataaaaaagcacaagaag 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 563 atcgtttctttaatggtcgtttatcagttttcaatggtcaatataaaaaagcacaagaag 504
Query: 864 aattattatatgcatttaataaatgtccaaatgattcaattaaaaataaaagattaatat 923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 aattattatatgcatttaataaatgtccaaatgattcaattaaaaataaaagattaatat 444
Query: 924 tattatttttagtaccaatgcaattagaacaatgtaaattcccaaagaaatcattattag 983 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 443 tattatttttagtaccaatgcaattagaacaatgtaaattcccaaagaaatcattattag 384
Query: 984 agaaatttaagttaactcaattcattgatattgttcaatctataaaaagtggtaatatta 1043 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 383 aggaatttaagttaactcaattcattgatattgttcaatctataaaaagtggtaatatta 324
Query: 1044 aacaatttaatgaatgtttgtcaactcatcaaaactttttcatttcaaaaggtatctatt 1103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 323 aacaatttaatgaatgtttgtcaactcatcaaaactttttcatttcaaaaggtatctatt 264
Query: 1104 tgattttagaaaaattgaaaattattgtctatagaaatctatttaaaaaggtacatttaa 1163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 263 tgattttagaaaaattgaaaattattgtctatagaaatctatttaaaaaggtacatttaa 204
Query: 1164 ttacaactggtcaaagaattccaattggtaatttcgtttccgctttgaaatggatggaaa 1223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 203 ttacaactggtcaaagaattccaattggtaatttcgtttccgctttgaaatggatggaaa 144
Query: 1224 atgatgctatcgatatcgtatgaaactgaatgtattctatcaaatttaatttataatggt 1283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143 atgatgctatcgatatcgtatgaaactgaatgtattctatcaaatttaatttataatggt 84
Query: 1284 tatcttaaaggttatatctctcataaagttgctcttgttgtctctccaacaaatcctttc 1343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83 tatcttaaaggttatatctctcataaagttgctcttgttgtctctccaacaaatcctttc 24
Query: 1344 ccaaaattacctttaaatt 1362 ||||||||||||||||||| Sbjct: 23 ccaaaattacctttaaatt 5
Score = 54.0 bits (27), Expect(2) = 1e-06 Identities = 27/27 (100%) Strand = Plus / Minus
Query: 651 caaaaaagaatgcagcattaggagttg 677 ||||||||||||||||||||||||||| Sbjct: 716 caaaaaagaatgcagcattaggagttg 690
Score = 32.2 bits (16), Expect(2) = 1e-06 Identities = 19/20 (95%) Strand = Plus / Minus
Query: 637 aatttagcagaatccaaaaa 656 |||||||||||||| ||||| Sbjct: 729 aatttagcagaatcaaaaaa 710
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,778,630,342 Number of extensions: 117449129 Number of successful extensions: 10767737 Number of sequences better than 10.0: 2327 Length of query: 1429 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1405 Effective length of database: 97,308,875,965 Effective search space: 136718970730825 Effective search space used: 136718970730825 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.27 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
3 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
3 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |