Contig-U10135-1
Contig ID Contig-U10135-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10135-1 (Contig-U10135-1Q) /CSM_Contig/Contig-U10135-1Q.Seq.d
ACTGTTGGCCTACTGGTGTTTTCAGGGGGCATTGAATTATATGAAGGGTT
TAGTAGGTACCAACGAAAACTTACAAGTCGAAGAAAGTGGTGATAATAAA
GGTGATATTGAACCAGNAGCAAAGAAAGGGTTTACTCAAACAATTATCAT
CATATGTTGGTAAAGATATTACATCTTTAATCTCATTACCAGTTTGGATT
TTCGAACCAGTATCATTCTTACAAGTTATGTCCGAACCATTACAATAGAA
CGCTTTATTATCTAAAGCCTCAAAACAAGATAGCGAATTTTTATGTTTAG
CTTATTTAGCTGCCTTCAATTGTGCATTATATAGTACTGCTGTTAGAACA
AGAAAACCATTTAATCCAATTTTAGGTGAAACCTTTGAAATTGTTGATAA
AAAAGGTGAATTTAGATTCCTTGCAGAACAAGTTAGTCATCACCCACCAA
TTGGTGTATCAGAGACAATTTCAGAAGATTATACTCTTCAATTAGAAACA
TTATTGAAATCCAAATTCTATGGTAACTCATCAGAGGTTGAAATTGATGG
TACCAATCATTTCTTCAATAAGAAGACCAACCACCATTACACATGGAATC
ATTTGGTAACCTTGTTGTCATAACATTATCATTGGTTCATTATGGTGGGA
TCATTATGGTGATTTAGTCATCGAAAATCACACTACCGGTAGCAAGGCAG
TACTCAAATTTGCTAAATCTGGTTGGTTAGGTGCCGGTCGTTATGGTGTC
ACTGGTAAAAATTGTGGATTGTGAAGGTGATGTTAGATACAGAATCACTG
GTAAATGGAATGAATCCATTCAATTATTCCAAGTCATGGATAATGGTTCA
TCCTCTACCACTTCCACTTGTCTTTGGGAAGCCAGCAAAGAACCAATCAA
TAATAAATTTTTATTCCCAAGATGGGTCGAAGAAAACGTTATTGATCTCA
ACGATGAATACAAAAAGATATTACCAGTCACCGATTCTCGTCTTAGAGCA
GATCGTATCGCTTTAGAAGAAGGTAACTTGGATGTCGCAGCTAAAGAAAG
AAAAACACAACTTGGAAGAGAAGCAAAGAGAAGACAAAAGACAAAGAGTT
GCTGAAAACAAAGAATGGGAAACTGCTCAATTTAAAAAAGTCGCTGATGC
TAAATTTGGTTACAGATGGAATTATTGTGGTAATTATTGGGAAGAAAGAG
AAGAAAGAGTTAAAGCAGCAGCTTCAAATTAATAAAAACAATAATAATTA
TAATATTTTAATCGTAAACAATTTATTCATTCAATTTCCGCTGTTATTAA
TTAATATATAAATAAAAAAAAAAAAAAAAAACAAAAAAATAAAAAATAAT
AAAAAACATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 1395
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1012866
End point 1014228
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 8
Link to clone list U10135
List of clone(s)

est1=SFA406F,1,575
est2=VFO164E,126,1285
est3=SSK681E,366,1300
est4=SFA406Z,595,1275
est5=VSJ126F,1032,1317
est6=VSJ126Z,1032,1264
est7=SSM876E,1087,1314
est8=VSC690E,1203,1390
Translated Amino Acid sequence
llaywcfqgalnymkglvgtnenlqveesgdnkgdiepxakkgftqtiiiicw*ryyifn
litsldfrtsiiltsyvrtitierfii*slktr*rifmfslfsclqlcii*ycc*nkkti
*snfr*nl*nc**kr*i*ipcrts*ssptnwcirdnfrrlyssirniieiqilw*lirg*
n*wyqsflq*edqpplhmesfgnlvvitlslvhyggiimvi*sskitlpvarqysnllnl
vg*VPVVMVSLVKIVDCEGDVRYRITGKWNESIQLFQVMDNGSSSTTSTCLWEASKEPIN
NKFLFPRWVEENVIDLNDEYKKILPVTDSRLRADRIALEEGNLDVAAKERKTQLGREAKR
RQKTKSC*kqrmgncsi*ksr*c*iwlqmellw*llgrkrrks*sssfkliktiiiiif*
s*tiysfnfrcy*liyk*kkkkktkk*kiiknilkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllvfsggielyegfsryqrkltsrrkw***r*y*txskervysnnyhhmlvkilhl*
shyqfgfsnqyhsyklcpnhynrtlyylkpqnkianfyv*li*lpsivhyivllleqenh
liqf*vkplkllikkvnldslqnklvithqlvyqrqfqkiilfn*khy*npnsmvthqrl
klmvpiissirrpttithgiiw*pcchniiigslwwdhygdlvienhttgskavlkfaks
gwlgagrygvtgkncgl*r*c*iqnhw*me*ihsiipshg*wfilyhfhlslgsqqrtnq
**ifipkmgrrkry*sqr*iqkditshrfss*srsyrfrrr*lgcrs*rkknttwkrske
ktkdkellktkngkllnlkkslmlnlvtdgiivviigkkekkelkqqlqinknnnnynil
ivnnlfiqfplllini*ikkkkknkkiknnkkhfkkkkkkkkkkk


Frame B:
llaywcfqgalnymkglvgtnenlqveesgdnkgdiepxakkgftqtiiiicw*ryyifn
litsldfrtsiiltsyvrtitierfii*slktr*rifmfslfsclqlcii*ycc*nkkti
*snfr*nl*nc**kr*i*ipcrts*ssptnwcirdnfrrlyssirniieiqilw*lirg*
n*wyqsflq*edqpplhmesfgnlvvitlslvhyggiimvi*sskitlpvarqysnllnl
vg*VPVVMVSLVKIVDCEGDVRYRITGKWNESIQLFQVMDNGSSSTTSTCLWEASKEPIN
NKFLFPRWVEENVIDLNDEYKKILPVTDSRLRADRIALEEGNLDVAAKERKTQLGREAKR
RQKTKSC*kqrmgncsi*ksr*c*iwlqmellw*llgrkrrks*sssfkliktiiiiif*
s*tiysfnfrcy*liyk*kkkkktkk*kiiknilkkkkkkkkkk


Frame C:
cwptgvfrgh*ii*rv**vptktykskkvviikvilnqxqrkgllkqlssyvgkditsli
slpvwifepvsflqvmseplq*nallskaskqdseflclaylaafncalystavrtrkpf
npilgetfeivdkkgefrflaeqvshhppigvsetisedytlqletllkskfygnsseve
idgtnhffnkktnhhytwnhlvtlls*hyhwfimvgslw*fshrkshyr*qgstqic*iw
lvrcrslwchw*klwivkvmldteslvngmnpfnyskswimvhplplplvfgkpaknqsi
infysqdgskktllistmntkryyqspilvleqivsl*kkvtwmsqlkkekhnleekqre
dkrqrvaenkewetaqfkkvadakfgyrwnycgnyweereervkaaasn**kq**l*yfn
rkqfihsisavin*yinkkkkkkqknkk**ktf*kkkkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10135-1 (Contig-U10135-1Q)
/CSM_Contig/Contig-U10135-1Q.Seq.d
(1395 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10135-1 (Contig-U10135-1Q) /CSM_Contig/Conti... 2597 0.0
Contig-U04080-1 (Contig-U04080-1Q) /CSM_Contig/Conti... 188 1e-47
Contig-U09511-1 (Contig-U09511-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U14271-1 (Contig-U14271-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U13937-1 (Contig-U13937-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U12134-1 (Contig-U12134-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U09225-1 (Contig-U09225-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U06389-1 (Contig-U06389-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U00582-1 (Contig-U00582-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U14254-1 (Contig-U14254-1Q) /CSM_Contig/Conti... 42 0.002

>Contig-U10135-1 (Contig-U10135-1Q) /CSM_Contig/Contig-U10135-1Q.Seq.d
Length = 1395

Score = 2597 bits (1310), Expect = 0.0
Identities = 1313/1313 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtgttttcagggggcattgaattatatgaagggtttagtaggtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggtgttttcagggggcattgaattatatgaagggtttagtaggtac 60


Query: 61 caacgaaaacttacaagtcgaagaaagtggtgataataaaggtgatattgaaccagnagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caacgaaaacttacaagtcgaagaaagtggtgataataaaggtgatattgaaccagnagc 120


Query: 121 aaagaaagggtttactcaaacaattatcatcatatgttggtaaagatattacatctttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagaaagggtttactcaaacaattatcatcatatgttggtaaagatattacatctttaa 180


Query: 181 tctcattaccagtttggattttcgaaccagtatcattcttacaagttatgtccgaaccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tctcattaccagtttggattttcgaaccagtatcattcttacaagttatgtccgaaccat 240


Query: 241 tacaatagaacgctttattatctaaagcctcaaaacaagatagcgaatttttatgtttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tacaatagaacgctttattatctaaagcctcaaaacaagatagcgaatttttatgtttag 300


Query: 301 cttatttagctgccttcaattgtgcattatatagtactgctgttagaacaagaaaaccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttatttagctgccttcaattgtgcattatatagtactgctgttagaacaagaaaaccat 360


Query: 361 ttaatccaattttaggtgaaacctttgaaattgttgataaaaaaggtgaatttagattcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaatccaattttaggtgaaacctttgaaattgttgataaaaaaggtgaatttagattcc 420


Query: 421 ttgcagaacaagttagtcatcacccaccaattggtgtatcagagacaatttcagaagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttgcagaacaagttagtcatcacccaccaattggtgtatcagagacaatttcagaagatt 480


Query: 481 atactcttcaattagaaacattattgaaatccaaattctatggtaactcatcagaggttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atactcttcaattagaaacattattgaaatccaaattctatggtaactcatcagaggttg 540


Query: 541 aaattgatggtaccaatcatttcttcaataagaagaccaaccaccattacacatggaatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaattgatggtaccaatcatttcttcaataagaagaccaaccaccattacacatggaatc 600


Query: 601 atttggtaaccttgttgtcataacattatcattggttcattatggtgggatcattatggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atttggtaaccttgttgtcataacattatcattggttcattatggtgggatcattatggt 660


Query: 661 gatttagtcatcgaaaatcacactaccggtagcaaggcagtactcaaatttgctaaatct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gatttagtcatcgaaaatcacactaccggtagcaaggcagtactcaaatttgctaaatct 720


Query: 721 ggttggttaggtgccggtcgttatggtgtcactggtaaaaattgtggattgtgaaggtga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggttggttaggtgccggtcgttatggtgtcactggtaaaaattgtggattgtgaaggtga 780


Query: 781 tgttagatacagaatcactggtaaatggaatgaatccattcaattattccaagtcatgga 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgttagatacagaatcactggtaaatggaatgaatccattcaattattccaagtcatgga 840


Query: 841 taatggttcatcctctaccacttccacttgtctttgggaagccagcaaagaaccaatcaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 taatggttcatcctctaccacttccacttgtctttgggaagccagcaaagaaccaatcaa 900


Query: 901 taataaatttttattcccaagatgggtcgaagaaaacgttattgatctcaacgatgaata 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 taataaatttttattcccaagatgggtcgaagaaaacgttattgatctcaacgatgaata 960


Query: 961 caaaaagatattaccagtcaccgattctcgtcttagagcagatcgtatcgctttagaaga 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 caaaaagatattaccagtcaccgattctcgtcttagagcagatcgtatcgctttagaaga 1020


Query: 1021 aggtaacttggatgtcgcagctaaagaaagaaaaacacaacttggaagagaagcaaagag 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aggtaacttggatgtcgcagctaaagaaagaaaaacacaacttggaagagaagcaaagag 1080


Query: 1081 aagacaaaagacaaagagttgctgaaaacaaagaatgggaaactgctcaatttaaaaaag 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aagacaaaagacaaagagttgctgaaaacaaagaatgggaaactgctcaatttaaaaaag 1140


Query: 1141 tcgctgatgctaaatttggttacagatggaattattgtggtaattattgggaagaaagag 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tcgctgatgctaaatttggttacagatggaattattgtggtaattattgggaagaaagag 1200


Query: 1201 aagaaagagttaaagcagcagcttcaaattaataaaaacaataataattataatatttta 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aagaaagagttaaagcagcagcttcaaattaataaaaacaataataattataatatttta 1260


Query: 1261 atcgtaaacaatttattcattcaatttccgctgttattaattaatatataaat 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 atcgtaaacaatttattcattcaatttccgctgttattaattaatatataaat 1313


>Contig-U04080-1 (Contig-U04080-1Q) /CSM_Contig/Contig-U04080-1Q.Seq.d
Length = 419

Score = 188 bits (95), Expect = 1e-47
Identities = 169/203 (83%)
Strand = Plus / Plus


Query: 1103 tgaaaacaaagaatgggaaactgctcaatttaaaaaagtcgctgatgctaaatttggtta 1162
||||| ||| || ||||||| ||| |||||||||||||| | || ||||||||||||||
Sbjct: 126 tgaaancaangantgggaaantgcncaatttaaaaaagtngntgntgctaaatttggttn 185


Query: 1163 cagatggaattattgtggtaattattgggaagaaagagaagaaagagttaaagcagcagc 1222
| | ||||||| ||||||||||| |||||||||| | || ||| | ||||| | | ||
Sbjct: 186 cngntggaattnttgtggtaattnttgggaagaangggangaanggnttaaanccncngc 245


Query: 1223 ttcaaattaataaaaacaataataattataatattttaatcgtaaacaatttattcattc 1282
||||||||| ||||| | |||||||| |||||||||||| |||| |||||| |||||||
Sbjct: 246 ttcaaattattaaaancnttaataattttaatattttaatngtaancaatttnttcattc 305


Query: 1283 aatttccgctgttattaattaat 1305
|||| ||| |||| |||||||||
Sbjct: 306 aattnccgntgttnttaattaat 328


>Contig-U09511-1 (Contig-U09511-1Q) /CSM_Contig/Contig-U09511-1Q.Seq.d
Length = 886

Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus


Query: 1224 tcaaattaataaaaacaataataattataata 1255
||||||||||||||| ||||||||| ||||||
Sbjct: 648 tcaaattaataaaaataataataataataata 679


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,102
Number of Sequences: 6905
Number of extensions: 19102
Number of successful extensions: 3022
Number of sequences better than 10.0: 919
length of query: 1395
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1379
effective length of database: 5,564,391
effective search space: 7673295189
effective search space used: 7673295189
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U10135-1 (Contig-U10135-1Q) /CSM_Contig/Contig-U10135-1Q.Seq.d
(1395 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ417167) Dictyostelium discoideum cDNA clone:ddv29o15, 5' ... 961 0.0 2
(BJ387259) Dictyostelium discoideum cDNA clone:dds1l02, 5' e... 862 0.0 2
(BJ398596) Dictyostelium discoideum cDNA clone:dds1l02, 3' e... 755 0.0 3
(BJ436053) Dictyostelium discoideum cDNA clone:ddv29o15, 3' ... 563 0.0 5
(C93999) Dictyostelium discoideum slug cDNA, clone SSK681. 438 e-175 2
(AU074433) Dictyostelium discoideum slug cDNA, clone SSK681. 476 e-129 1
(C93251) Dictyostelium discoideum slug cDNA, clone SSM876. 208 9e-55 2
(AU269442) Dictyostelium discoideum vegetative cDNA clone:VS... 208 1e-54 2
(AU269443) Dictyostelium discoideum vegetative cDNA clone:VS... 208 4e-49 1
(BJ444483) Dictyostelium discoideum cDNA clone:ddv56c16, 3' ... 182 2e-41 1
(AU052891) Dictyostelium discoideum slug cDNA, clone SLF279. 101 8e-18 2
(EL569119) Physarum12177 Physarum polycephalum starvation st... 54 1e-09 2
(EL569054) Physarum12176 Physarum polycephalum starvation st... 54 1e-09 2
(CB814958) USDA-FP_100431 Adult Alate Brown Citrus Aphid Tox... 46 3e-07 2
(DN798741) Volcani_2_03_G03 Volcani02 Citrus reticulata x Ci... 44 2e-06 3
(DY283678) IC0AAA5AH03RM1 CitNFL Citrus clementina cDNA 5', ... 44 3e-06 3
(DY284210) IC0AAA60DA05RM1 CitNFL Citrus clementina cDNA 5',... 44 3e-06 3
(DY269595) IC0AAA27BE08RM1 CitNFL Citrus clementina cDNA 5',... 44 3e-06 3
(DY303184) KN0AAQ5YA22RM1 CitNFL Citrus clementina cDNA 5', ... 44 3e-06 3
(DY295298) IC0AAA87DF02RM1 CitNFL Citrus clementina cDNA 5',... 44 5e-06 3
(DY278445) IC0AAA46CF08RM1 CitNFL Citrus clementina cDNA 5',... 44 1e-05 3
(DY288667) IC0AAA70BB01RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY286342) IC0AAA64DE05RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY299506) IC0AAA98CD01RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY290235) IC0AAA74DD05RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY267493) IC0AAA21CD11RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY291030) IC0AAA77AC01RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY289014) IC0AAA71AH08RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY301250) KN0AAQ12YJ15RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY292079) IC0AAA79DH03RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY289734) IC0AAA73BF11RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(DY297075) IC0AAA91DA08RM1 CitNFL Citrus clementina cDNA 5',... 44 2e-05 2
(EL451319) CHTM4209.b2_B22.ab1 CHT(LMS) Jerusalem artichoke ... 42 2e-05 2
(CX668306) UCRCP01_036_H03_T3 Swingle citrumelo nematode-cha... 44 2e-05 2
(EY825426) PT11-C1-901-081-C07-CT.F Poncirus trifoliata leaf... 44 2e-05 2
(EY718327) CS00-C3-702-097-A06-CT.F Sweet orange fruit, deve... 44 2e-05 2
(EY777222) CR05-C1-103-025-E06-CT.F Mandarin leaf, infected ... 44 2e-05 2
(EL445250) CHTM2206.b1_K24.ab1 CHT(LMS) Jerusalem artichoke ... 42 2e-05 2
(EL430435) CHCM9538.b1_D10.ab1 CHC(LMS) Texas blueweed Helia... 42 2e-05 2
(DN959885) USDA-FP/ARO_15715 Star Ruby grapefruit hot water-... 44 2e-05 2
(EL416570) CHCL5159.b1_N17.ab1 CHC(LMS) Texas blueweed Helia... 42 2e-05 2
(EL436452) CHTM11490.b1_D18.ab1 CHT(LMS) Jerusalem artichoke... 42 2e-05 2
(CN183274) UCRCS04_0003M07_r Ruby Orange Developing Flower c... 44 2e-05 2
(EE634840) CHEL5703.b1_N10.ab1 CHE(LMS) serpentine sunflower... 42 2e-05 2
(EY775124) CR05-C1-103-001-E03-CT.F Mandarin leaf, infected ... 44 2e-05 2
(CF836630) UCRCS03_03E22_r Washington Navel Orange Shoot Mer... 44 2e-05 2
(EE619287) CHWM6553.b1_A07.ab1 CHW(LMS) silverleaf sunflower... 42 2e-05 2
(CX546176) UCRPT01_5_027_D05_T3 Poncirus trifoliata CTV-chal... 44 2e-05 2
(DN620341) UCRCS11_05C22_r Parent Washington Navel Orange Sc... 44 2e-05 2
(BQ916712) QHB18M19.yg.ab1 QH_ABCDI sunflower RHA801 Heliant... 42 2e-05 2
(EC825957) SME00010194 esmbsro2 Sawyeria marylandensis cDNA,... 46 9e-05 2
(EY723243) CS00-C3-703-055-B06-CT.F Sweet orange fruit, deve... 40 2e-04 2
(EL454061) CHTM6763.b1_E12.ab1 CHT(LMS) Jerusalem artichoke ... 40 2e-04 2
(EL442183) CHTM18877.b1_I15.ab1 CHT(LMS) Jerusalem artichoke... 40 2e-04 2
(EY738903) CS00-C3-705-049-E05-CT.F Sweet orange fruit, deve... 40 2e-04 2
(EE642471) CHEM2432.b1_P07.ab1 CHE(LMS) serpentine sunflower... 40 2e-04 2
(EL827400) CBWN9577.b1 NICHD_XGC_tropTe1 Xenopus (Silurana) ... 50 4e-04 2
(EY664338) CS00-C1-101-065-E06-CT.F Sweet orange leaf, infec... 38 0.012 2
(EL571407) Physarum03691 Physarum polycephalum starvation st... 54 0.015 1
(EL445194) CHTM22008.b1_P05.ab1 CHT(LMS) Jerusalem artichoke... 40 0.017 3
(EL443831) CHTM20753.b1_A05.ab1 CHT(LMS) Jerusalem artichoke... 38 0.046 2
(CJ477930) Macaca fascicularis mRNA, clone: QtrA-12887, 5' e... 42 0.078 2
(CJ459056) Macaca fascicularis mRNA, clone: QmoA-11173, 5' e... 42 0.30 2
(CC943372) BOIEW26TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 48 0.90 1
(CJ434800) Macaca fascicularis mRNA, clone: QccE-11813, 5' e... 48 0.90 1
(FE259167) CAPH7543.fwd CAPH Naegleria gruberi amoeba stage ... 48 0.90 1
(FE248173) CAPH1529.fwd CAPH Naegleria gruberi amoeba stage ... 48 0.90 1
(FE248061) CAPH1461.fwd CAPH Naegleria gruberi amoeba stage ... 48 0.90 1
(FE238119) CAPG4699.fwd CAPG Naegleria gruberi amoeba stage ... 48 0.90 1
(EY178882) CBTI6656.b1_P07.ab1:P Triphysaria pusilla root ti... 48 0.90 1
(EY147377) CBTN10773.b1_I05.ab1:P Triphysaria pusilla root t... 48 0.90 1
(AU262729) Dictyostelium discoideum vegetative cDNA clone:VS... 44 0.98 2
(EL447684) CHTM26422.b1_L06.ab1 CHT(LMS) Jerusalem artichoke... 40 1.0 2
(CI079717) Oryza sativa Japonica Group cDNA, clone: 017-M017... 34 1.2 3
(EJ197561) 1092344258361 Global-Ocean-Sampling_GS-27-01-01-1... 44 1.3 2
(FD556313) RR4EJ78TF RR4(PB) Raphanus raphanistrum subsp. la... 36 1.4 3
(BJ416228) Dictyostelium discoideum cDNA clone:ddv25k08, 5' ... 38 3.2 2
(CU074292) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1
(AC218316) Bos taurus clone CH240-287J12, WORKING DRAFT SEQU... 46 3.6 1
(AC203114) Aotus nancymaae clone CH258-405B12, WORKING DRAFT... 46 3.6 1
(AC180193) Strongylocentrotus purpuratus clone R3-3H3, WORKI... 46 3.6 1
(AM686008) Entamoeba terrapinae GSS, clone terra145d11.q1k. 46 3.6 1
(CT365689) Sus scrofa genomic clone CH242-468D14, genomic su... 46 3.6 1
(AG689128) Macaca fuscata fuscata DNA, clone: MSB2-121L04_R,... 46 3.6 1
(AG350262) Mus musculus molossinus DNA, clone:MSMg01-146N06.... 46 3.6 1
(EB172581) EST007480 injuried spinal cord cDNA library in Ge... 46 3.6 1
(DR069734) RTDK1_9_D01.b1_A029 Roots, dark Pinus taeda cDNA ... 46 3.6 1
(CX715225) RTPQ1_32_D09.g1_A032 Roots treated with paraquat ... 46 3.6 1
(CX715175) RTPQ1_32_D09.b1_A032 Roots treated with paraquat ... 46 3.6 1
(CX713012) RTPQ1_6_A01.g1_A032 Roots treated with paraquat P... 46 3.6 1
(CO370210) RTK1_66_F04.b1_A029 Roots minus potassium Pinus t... 46 3.6 1
(CN631788) taf44b09.y1 Hydra EST Darmstadt I Hydra magnipapi... 46 3.6 1
(CF479435) RTWW3_22_D09.b1_A022 Well-watered loblolly pine r... 46 3.6 1
(CF473982) RTWW2_18_C02.b1_A021 Well-watered loblolly pine r... 46 3.6 1
(CD327785) AGENCOURT_14140065 NICHD_XGC_Brn1 Xenopus laevis ... 46 3.6 1
(BG706974) 602672171F1 NIH_MGC_96 Homo sapiens cDNA clone IM... 46 3.6 1
(CJ447802) Macaca fascicularis mRNA, clone: QflA-13149, 5' e... 36 4.1 2
(BJ363139) Dictyostelium discoideum cDNA clone:ddc25e08, 5' ... 32 5.0 3
(FK806793) HTAM-aaa34g12.g1 Heterorhabditis_bacteriophora_ES... 38 5.6 2
(BJ416544) Dictyostelium discoideum cDNA clone:ddv26c19, 5' ... 32 6.1 3

>(BJ417167) Dictyostelium discoideum cDNA clone:ddv29o15, 5' end,
single read.
Length = 573

Score = 961 bits (485), Expect(2) = 0.0
Identities = 485/485 (100%)
Strand = Plus / Plus


Query: 126 aagggtttactcaaacaattatcatcatatgttggtaaagatattacatctttaatctca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagggtttactcaaacaattatcatcatatgttggtaaagatattacatctttaatctca 60


Query: 186 ttaccagtttggattttcgaaccagtatcattcttacaagttatgtccgaaccattacaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaccagtttggattttcgaaccagtatcattcttacaagttatgtccgaaccattacaa 120


Query: 246 tagaacgctttattatctaaagcctcaaaacaagatagcgaatttttatgtttagcttat 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagaacgctttattatctaaagcctcaaaacaagatagcgaatttttatgtttagcttat 180


Query: 306 ttagctgccttcaattgtgcattatatagtactgctgttagaacaagaaaaccatttaat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttagctgccttcaattgtgcattatatagtactgctgttagaacaagaaaaccatttaat 240


Query: 366 ccaattttaggtgaaacctttgaaattgttgataaaaaaggtgaatttagattccttgca 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaattttaggtgaaacctttgaaattgttgataaaaaaggtgaatttagattccttgca 300


Query: 426 gaacaagttagtcatcacccaccaattggtgtatcagagacaatttcagaagattatact 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaacaagttagtcatcacccaccaattggtgtatcagagacaatttcagaagattatact 360


Query: 486 cttcaattagaaacattattgaaatccaaattctatggtaactcatcagaggttgaaatt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttcaattagaaacattattgaaatccaaattctatggtaactcatcagaggttgaaatt 420


Query: 546 gatggtaccaatcatttcttcaataagaagaccaaccaccattacacatggaatcatttg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatggtaccaatcatttcttcaataagaagaccaaccaccattacacatggaatcatttg 480


Query: 606 gtaac 610
|||||
Sbjct: 481 gtaac 485

Score = 163 bits (82), Expect(2) = 0.0
Identities = 85/86 (98%)
Strand = Plus / Plus


Query: 614 gttgtcataacattatcattggttcattatggtgggatcattatggtgatttagtcatcg 673
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 488 gttgtcataacattatcattggttcattatggttggatcattatggtgatttagtcatcg 547


Query: 674 aaaatcacactaccggtagcaaggca 699
||||||||||||||||||||||||||
Sbjct: 548 aaaatcacactaccggtagcaaggca 573

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,290,035,074
Number of extensions: 72561482
Number of successful extensions: 5742670
Number of sequences better than 10.0: 105
Length of query: 1395
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1371
Effective length of database: 97,308,875,965
Effective search space: 133410468948015
Effective search space used: 133410468948015
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10135-1 (Contig-U10135-1Q) /CSM_Contig/Contig-U10135-1Q.Seq.d
(1395 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54QP6) RecName: Full=Oxysterol-binding protein 8; AltName: Ful... 421 e-131
(Q54ID7) RecName: Full=Oxysterol-binding protein 11; AltName: Fu... 160 6e-65
EU973920_1(EU973920|pid:none) Zea mays clone 424251 oxysterol-bi... 133 2e-46
AP008209_1059(AP008209|pid:none) Oryza sativa (japonica cultivar... 127 3e-46
EF147666_1(EF147666|pid:none) Populus trichocarpa clone WS0124_D... 125 6e-45
FJ617521_1(FJ617521|pid:none) Capsicum annuum oxysterol-binding ... 118 1e-44
AC011436_15(AC011436|pid:none) Arabidopsis thaliana chromosome I... 122 2e-44
AL162508_15(AL162508|pid:none) Arabidopsis thaliana DNA chromoso... 120 7e-44
CP001324_588(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 121 7e-42
AB025604_8(AB025604|pid:none) Arabidopsis thaliana genomic DNA, ... 109 4e-40
CP000583_3(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 c... 119 9e-39
AM270258_12(AM270258|pid:none) Aspergillus niger contig An12c001... 107 2e-37
AF491782_1(AF491782|pid:none) Homo sapiens oxysterol binding pro... 105 3e-37
AF491783_1(AF491783|pid:none) Homo sapiens oxysterol binding pro... 105 3e-37
AF491784_1(AF491784|pid:none) Homo sapiens oxysterol binding pro... 105 3e-37
AB384766_1(AB384766|pid:none) Synthetic construct DNA, clone: pF... 108 8e-37
AK093902_1(AK093902|pid:none) Homo sapiens cDNA FLJ36583 fis, cl... 108 8e-37
(Q9BZF3) RecName: Full=Oxysterol-binding protein-related protein... 108 8e-37
AK300389_1(AK300389|pid:none) Homo sapiens cDNA FLJ60071 complet... 108 8e-37
AF462443_1(AF462443|pid:none) Homo sapiens OSBP-related protein ... 108 8e-37
AK037703_1(AK037703|pid:none) Mus musculus 16 days neonate thymu... 107 1e-36
AK027600_1(AK027600|pid:none) Homo sapiens cDNA FLJ14694 fis, cl... 107 1e-36
AB046640_1(AB046640|pid:none) Macaca fascicularis brain cDNA, cl... 107 2e-36
AM920436_1159(AM920436|pid:none) Penicillium chrysogenum Wiscons... 105 4e-36
AK220498_1(AK220498|pid:none) Mus musculus mRNA for mKIAA4128 pr... 107 4e-36
AL928867_2(AL928867|pid:none) Mouse DNA sequence from clone RP23... 107 4e-36
AL928905_3(AL928905|pid:none) Mouse DNA sequence from clone RP23... 107 4e-36
(O14340) RecName: Full=Oxysterol-binding protein homolog C2F12.0... 107 1e-35
AB046641_1(AB046641|pid:none) Macaca fascicularis brain cDNA, cl... 104 2e-35
BC166009_1(BC166009|pid:none) Synthetic construct Mus musculus c... 106 2e-35
(Q9DBS9) RecName: Full=Oxysterol-binding protein-related protein... 108 3e-35
AB208886_1(AB208886|pid:none) Homo sapiens mRNA for oxysterol-bi... 105 2e-34
AY450639_1(AY450639|pid:none) Solanum tuberosum clone plbr3 puta... 111 3e-33
BX004991_4(BX004991|pid:none) Zebrafish DNA sequence from clone ... 98 1e-32
AX074157_1(AX074157|pid:none) Sequence 1 from Patent WO0104314. 91 1e-32
BX842641_28(BX842641|pid:none) Neurospora crassa DNA linkage gro... 103 2e-32
(Q12451) RecName: Full=Oxysterol-binding protein homolog 2; &S5... 102 4e-32
CU928169_689(CU928169|pid:none) Kluyveromyces thermotolerans str... 101 3e-31
L28920_10(L28920|pid:none) Saccharomyces cerevisiae chromosome I... 104 8e-31
S47536(S47536;S53461;S53463;S43081) oxysterol-binding protein ho... 104 8e-31
(P35845) RecName: Full=Oxysterol-binding protein homolog 1; &AY... 104 8e-31
DQ481666_16(DQ481666|pid:none) Takifugu rubripes HoxBb gene clus... 100 1e-30
CR382123_177(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 98 3e-30
BC083531_1(BC083531|pid:none) Danio rerio oxysterol binding prot... 130 1e-28
BC090724_1(BC090724|pid:none) Danio rerio oxysterol binding prot... 130 1e-28
AM270254_2(AM270254|pid:none) Aspergillus niger contig An11c0370... 97 4e-28
AC004669_24(AC004669|pid:none) Arabidopsis thaliana chromosome 2... 80 3e-27
CU928173_217(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 89 8e-26
CP000498_323(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 94 8e-26
CR380949_204(CR380949|pid:none) Candida glabrata strain CBS138 c... 96 1e-25
AK171585_1(AK171585|pid:none) Mus musculus B6-derived CD11 +ve d... 106 1e-25
DQ481665_2(DQ481665|pid:none) Takifugu rubripes HoxBa gene clust... 119 2e-25
BX004781_1(BX004781|pid:none) Zebrafish DNA sequence from clone ... 119 3e-25
CR382139_743(CR382139|pid:none) Debaryomyces hansenii strain CBS... 91 5e-25
(P22059) RecName: Full=Oxysterol-binding protein 1; &A34581(A34... 117 1e-24
AK299071_1(AK299071|pid:none) Homo sapiens cDNA FLJ60330 complet... 117 1e-24
DQ167771_1(DQ167771|pid:none) Drosophila simulans putative Oxyst... 99 1e-24
AB244622_1(AB244622|pid:none) Glycine max GmOSBP mRNA for oxyste... 84 1e-24
AK220301_1(AK220301|pid:none) Mus musculus mRNA for mKIAA4220 pr... 117 1e-24
(Q3B7Z2) RecName: Full=Oxysterol-binding protein 1; 117 1e-24
DQ167772_1(DQ167772|pid:none) Drosophila teissieri putative Oxys... 99 1e-24
BC094342_1(BC094342|pid:none) Mus musculus oxysterol binding pro... 114 8e-24
CR382134_467(CR382134|pid:none) Debaryomyces hansenii strain CBS... 95 1e-23
Y13951_1(Y13951|pid:none) Drosophila melanogaster cDNA encoding ... 96 1e-23
AK229811_1(AK229811|pid:none) Arabidopsis thaliana mRNA for hypo... 82 2e-23
AL033545_17(AL033545|pid:none) Arabidopsis thaliana DNA chromoso... 82 4e-23
EU025708_17(EU025708|pid:none) Salmo salar EAP30 subunit of ELL ... 111 5e-23
AK173006_1(AK173006|pid:none) Mus musculus premature mRNA for mK... 80 7e-23
AY139750_1(AY139750|pid:none) Arabidopsis thaliana AT4g08180/T12... 78 7e-23
AC091775_13(AC091775|pid:none) Oryza sativa chromosome 3 BAC OSJ... 80 1e-22
AL080252_2(AL080252|pid:none) Arabidopsis thaliana DNA chromosom... 78 2e-22
DQ630461_1(DQ630461|pid:none) Oncorhynchus mykiss OORP mRNA, com... 108 3e-22
AE013599_3994(AE013599|pid:none) Drosophila melanogaster chromos... 108 6e-22
AM458711_3(AM458711|pid:none) Vitis vinifera contig VV78X211217.... 82 9e-22
AF042797_5(AF042797|pid:none) Takifugu rubripes FRG1 (FRG1), N-a... 107 1e-21
BC063121_1(BC063121|pid:none) Homo sapiens oxysterol binding pro... 104 9e-21
AF255320_1(AF255320|pid:none) Drosophila yakuba oxysterol bindin... 84 1e-20
AF252729_1(AF252729|pid:none) Drosophila simulans strain sim1 ox... 85 2e-20
AK145292_1(AK145292|pid:none) Mus musculus mammary gland RCB-052... 102 3e-20
AF252731_1(AF252731|pid:none) Drosophila simulans strain sim3 ox... 85 4e-20
BC091208_1(BC091208|pid:none) Rattus norvegicus oxysterol bindin... 101 7e-20
CR760113_1(CR760113|pid:none) Xenopus tropicalis finished cDNA, ... 100 1e-19
BC066128_1(BC066128|pid:none) Xenopus tropicalis oxysterol bindi... 100 1e-19
AK315576_1(AK315576|pid:none) Homo sapiens cDNA, FLJ96652, highl... 100 1e-19
BC057194_1(BC057194|pid:none) Mus musculus oxysterol binding pro... 100 1e-19
AB018315_1(AB018315|pid:none) Homo sapiens mRNA for KIAA0772 pro... 100 2e-19
(Q9H1P3) RecName: Full=Oxysterol-binding protein-related protein... 100 2e-19
BC041533_1(BC041533|pid:none) Xenopus laevis hypothetical protei... 100 2e-19
BC073379_1(BC073379|pid:none) Xenopus laevis hypothetical protei... 100 2e-19
AB463156_1(AB463156|pid:none) Synthetic construct DNA, clone: pF... 100 2e-19
BC102883_1(BC102883|pid:none) Bos taurus oxysterol-binding prote... 100 2e-19
BT021611_1(BT021611|pid:none) Bos taurus oxysterol binding prote... 100 2e-19
AC004016_1(AC004016|pid:none) Homo sapiens BAC clone CTA-424N5 f... 99 3e-19
DQ167769_1(DQ167769|pid:none) Drosophila erecta putative Oxyster... 99 5e-19
BC041743_1(BC041743|pid:none) Xenopus laevis oxysterol binding p... 99 5e-19
EU955934_1(EU955934|pid:none) Zea mays clone 1553241 oxysterol-b... 76 6e-19
AL117202_18(AL117202|pid:none) Caenorhabditis elegans YAC Y47D3A... 97 1e-18
AL117202_21(AL117202|pid:none) Caenorhabditis elegans YAC Y47D3A... 97 1e-18
BC144117_1(BC144117|pid:none) Homo sapiens oxysterol binding pro... 97 1e-18
AK301862_1(AK301862|pid:none) Homo sapiens cDNA FLJ55503 complet... 97 1e-18
AF274714_1(AF274714|pid:none) Homo sapiens oxysterol-binding pro... 97 1e-18
AF392450_1(AF392450|pid:none) Homo sapiens oxysterol-binding pro... 97 1e-18
AF392449_1(AF392449|pid:none) Homo sapiens oxysterol-binding pro... 97 1e-18
AK001079_1(AK001079|pid:none) Homo sapiens cDNA FLJ10217 fis, cl... 97 1e-18
AC141435_21(AC141435|pid:none) Medicago truncatula clone mth2-21... 81 2e-18
CR857904_1(CR857904|pid:none) Pongo abelii mRNA; cDNA DKFZp459N1... 97 2e-18
BC162978_1(BC162978|pid:none) Danio rerio oxysterol binding prot... 97 2e-18
BX465190_10(BX465190|pid:none) Zebrafish DNA sequence from clone... 97 2e-18
(Q8K4M9) RecName: Full=Oxysterol-binding protein-related protein... 97 2e-18
AY809883_1(AY809883|pid:none) Schistosoma japonicum SJCHGC04472 ... 96 2e-18
AK168366_1(AK168366|pid:none) Mus musculus 17 days embryo heart ... 96 2e-18
(Q91XL9) RecName: Full=Oxysterol-binding protein-related protein... 96 2e-18
BC086265_1(BC086265|pid:none) Xenopus laevis hypothetical LOC495... 96 2e-18
AK132676_1(AK132676|pid:none) Mus musculus adult male testis cDN... 96 2e-18
BC045502_1(BC045502|pid:none) Danio rerio oxysterol binding prot... 96 3e-18
FN357392_47(FN357392|pid:none) Schistosoma mansoni genome sequen... 96 3e-18
DQ167770_1(DQ167770|pid:none) Drosophila orena putative Oxystero... 96 4e-18
CU928180_618(CU928180|pid:none) Kluyveromyces thermotolerans str... 96 4e-18
AK292895_1(AK292895|pid:none) Homo sapiens cDNA FLJ77475 complet... 96 4e-18
AM910991_296(AM910991|pid:none) Plasmodium knowlesi strain H chr... 95 7e-18
AF394063_1(AF394063|pid:none) Mus musculus oxysterol-binding pro... 94 9e-18
(P38713) RecName: Full=Oxysterol-binding protein homolog 3; &S4... 94 1e-17
AK093196_1(AK093196|pid:none) Homo sapiens cDNA FLJ35877 fis, cl... 93 2e-17
AB051451_1(AB051451|pid:none) Homo sapiens mRNA for KIAA1664 pro... 93 2e-17
AB384622_1(AB384622|pid:none) Synthetic construct DNA, clone: pF... 93 2e-17
AF288741_1(AF288741|pid:none) Homo sapiens oxysterol binding pro... 93 2e-17
CR380956_462(CR380956|pid:none) Candida glabrata strain CBS138 c... 93 2e-17
CR860450_1(CR860450|pid:none) Pongo abelii mRNA; cDNA DKFZp459L0... 93 2e-17
AK296525_1(AK296525|pid:none) Homo sapiens cDNA FLJ55561 complet... 93 2e-17
AK133806_1(AK133806|pid:none) Mus musculus 8 days embryo whole b... 93 3e-17
AL691413_7(AL691413|pid:none) Mouse DNA sequence from clone RP23... 92 3e-17
BC058356_1(BC058356|pid:none) Mus musculus oxysterol binding pro... 92 3e-17
(Q5QNQ6) RecName: Full=Oxysterol-binding protein 2; &AL691413_9... 92 3e-17
AK296354_1(AK296354|pid:none) Homo sapiens cDNA FLJ59707 complet... 91 8e-17
CR940348_559(CR940348|pid:none) Theileria annulata strain Ankara... 72 1e-16
CP000496_702(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 90 2e-16
CR382123_728(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 90 2e-16
Z81061_3(Z81061|pid:none) Caenorhabditis elegans Cosmid F14H8, c... 90 2e-16
Z81061_2(Z81061|pid:none) Caenorhabditis elegans Cosmid F14H8, c... 90 2e-16
AE016820_725(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 89 3e-16
EU957136_1(EU957136|pid:none) Zea mays clone 1583892 unknown mRNA. 81 3e-16
(O13944) RecName: Full=Oxysterol-binding protein homolog C23H4.0... 74 1e-15
AL049730_5(AL049730|pid:none) Arabidopsis thaliana DNA chromosom... 86 4e-15
CU928176_461(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 84 9e-15
BT067318_1(BT067318|pid:none) Zea mays full-length cDNA clone ZM... 84 2e-14
AK069104_1(AK069104|pid:none) Oryza sativa Japonica Group cDNA c... 83 2e-14
EF676788_1(EF676788|pid:none) Picea sitchensis clone WS02752_H12... 82 4e-14
DQ241801_1(DQ241801|pid:none) Petunia integrifolia oxysterol-bin... 79 3e-13
AY051614_1(AY051614|pid:none) Drosophila melanogaster GH25973 fu... 78 7e-13
AE014297_2885(AE014297|pid:none) Drosophila melanogaster chromos... 78 7e-13
AE014297_2881(AE014297|pid:none) Drosophila melanogaster chromos... 78 7e-13
FN392321_436(FN392321|pid:none) Pichia pastoris GS115 chromosome... 77 1e-12
AJ278263_1(AJ278263|pid:none) Mus musculus domesticus mRNA for o... 76 3e-12
AJ276505_1(AJ276505|pid:none) Mus musculus genomic fragment, 281... 76 3e-12
AC003093_2(AC003093|pid:none) Human BAC clone CTA-385F2 from 7p1... 57 6e-12
CR749542_1(CR749542|pid:none) Homo sapiens mRNA; cDNA DKFZp686A1... 75 7e-12
AF323730_1(AF323730|pid:none) Homo sapiens OSBP-related protein ... 75 7e-12
CR858950_1(CR858950|pid:none) Pongo abelii mRNA; cDNA DKFZp469P0... 75 7e-12
BX647211_1(BX647211|pid:none) Homo sapiens mRNA; cDNA DKFZp686C0... 75 7e-12
FN357309_27(FN357309|pid:none) Schistosoma mansoni genome sequen... 75 7e-12
AB040967_1(AB040967|pid:none) Homo sapiens mRNA for KIAA1534 pro... 74 1e-11
AK293000_1(AK293000|pid:none) Homo sapiens cDNA FLJ78486 complet... 74 1e-11
AK301003_1(AK301003|pid:none) Homo sapiens cDNA FLJ51506 complet... 74 1e-11
(Q9H0X9) RecName: Full=Oxysterol-binding protein-related protein... 74 1e-11
T38327(T38327) hypothetical protein SPAC23H4.01c - fission yeast... 74 2e-11
T20938(T20938)hypothetical protein F14H8.1 - Caenorhabditis eleg... 73 2e-11
BC161062_1(BC161062|pid:none) Xenopus tropicalis hypothetical pr... 72 5e-11
CR382131_930(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 70 2e-10
Z70269_4(Z70269|pid:none) Caenorhabditis elegans Cosmid ZK1086, ... 69 4e-10
Z70269_3(Z70269|pid:none) Caenorhabditis elegans Cosmid ZK1086, ... 69 4e-10
T27691(T27691)hypothetical protein ZK1086.1 - Caenorhabditis ele... 69 4e-10
EU730901_10(EU730901|pid:none) Brachypodium distachyon clone BAC... 69 5e-10
AM437268_1(AM437268|pid:none) Vitis vinifera contig VV78X171279.... 67 1e-09
CP000594_268(CP000594|pid:none) Ostreococcus lucimarinus CCE9901... 66 3e-09
(Q86KG4) RecName: Full=Oxysterol-binding protein 4; AltName: Ful... 66 3e-09
EF555118_1(EF555118|pid:none) Pholiota adiposa development prote... 48 4e-09
(Q9UW25) RecName: Full=Oxysterol-binding protein-like protein OB... 65 8e-09
FN357451_13(FN357451|pid:none) Schistosoma mansoni genome sequen... 45 1e-08
CP001576_533(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 64 1e-08
CR954215_198(CR954215|pid:none) Ostreococcus tauri strain OTTH05... 64 2e-08
AE016818_59(AE016818|pid:none) Ashbya gossypii (= Eremothecium g... 62 4e-08
AY961981_2(AY961981|pid:none) Candida parapsilosis PAPa (PAPa), ... 62 5e-08
CR382121_118(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 60 1e-07
(Q54PS9) RecName: Full=Oxysterol-binding protein 9; Sho... 60 1e-07
BC017505_1(BC017505|pid:none) Homo sapiens, clone IMAGE:4873434,... 60 2e-07
BT071810_1(BT071810|pid:none) Drosophila melanogaster MIP02920 f... 60 2e-07
(Q54NM4) RecName: Full=Oxysterol-binding protein 10; AltName: Fu... 59 3e-07
(Q02201) RecName: Full=Oxysterol-binding protein homolog 6; &S2... 59 3e-07
CP000501_243(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 59 4e-07
(P38755) RecName: Full=Oxysterol-binding protein homolog 7; &AY... 58 7e-07
AF323726_1(AF323726|pid:none) Homo sapiens OSBP-related protein ... 57 1e-06
AK173174_1(AK173174|pid:none) Mus musculus mRNA for mKIAA1451 pr... 57 1e-06
(Q8MPQ7) RecName: Full=Oxysterol-binding protein 1; AltName: Ful... 57 2e-06
BT066934_1(BT066934|pid:none) Zea mays full-length cDNA clone ZM... 57 2e-06
AY224588_1(AY224588|pid:none) Oryza sativa (japonica cultivar-gr... 57 2e-06
AP008209_2382(AP008209|pid:none) Oryza sativa (japonica cultivar... 57 2e-06
FM992692_156(FM992692|pid:none) Candida dubliniensis CD36 chromo... 57 2e-06
CU928174_58(CU928174|pid:none) Zygosaccharomyces rouxii strain C... 56 4e-06
BC125949_1(BC125949|pid:none) Danio rerio oxysterol binding prot... 56 4e-06
BX255930_8(BX255930|pid:none) Zebrafish DNA sequence from clone ... 56 4e-06
AK220257_1(AK220257|pid:none) Mus musculus mRNA for mKIAA0772 pr... 55 5e-06
FN392319_1446(FN392319|pid:none) Pichia pastoris GS115 chromosom... 55 5e-06
(Q9UUA1) RecName: Full=Oxysterol-binding protein homolog C23B6.0... 55 5e-06
BT087879_1(BT087879|pid:none) Zea mays full-length cDNA clone ZM... 55 6e-06
BT034348_1(BT034348|pid:none) Zea mays full-length cDNA clone ZM... 38 8e-06
AB209872_1(AB209872|pid:none) Homo sapiens mRNA for oxysterol-bi... 54 1e-05
AK304067_1(AK304067|pid:none) Homo sapiens cDNA FLJ58351 complet... 54 1e-05
AK000370_1(AK000370|pid:none) Homo sapiens cDNA FLJ20363 fis, cl... 54 1e-05
(Q9BXB5) RecName: Full=Oxysterol-binding protein-related protein... 54 1e-05
AK097503_1(AK097503|pid:none) Homo sapiens cDNA FLJ40184 fis, cl... 54 1e-05
CR382127_84(CR382127|pid:none) Yarrowia lipolytica strain CLIB12... 54 2e-05
(Q54RM1) RecName: Full=Oxysterol-binding protein 7; AltName: Ful... 54 2e-05
BC119824_1(BC119824|pid:none) Bos taurus oxysterol binding prote... 54 2e-05
BC021507_1(BC021507|pid:none) Mus musculus oxysterol binding pro... 53 2e-05
AL627406_6(AL627406|pid:none) Mouse DNA sequence from clone RP23... 53 2e-05
AC149130_38(AC149130|pid:none) Medicago truncatula chromosome 2 ... 53 2e-05
AX392093_1(AX392093|pid:none) Sequence 3 from Patent WO0216433. ... 53 2e-05
(A2A8Z1) RecName: Full=Oxysterol-binding protein-related protein... 53 2e-05
AX392091_1(AX392091|pid:none) Sequence 1 from Patent WO0216433. ... 53 2e-05
AF000195_7(AF000195|pid:none) Caenorhabditis elegans cosmid C32F... 53 3e-05
FN357861_2(FN357861|pid:none) Schistosoma mansoni genome sequenc... 53 3e-05
BT069722_1(BT069722|pid:none) Zea mays full-length cDNA clone ZM... 53 3e-05
AP007151_1295(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 53 3e-05
AF000195_8(AF000195|pid:none) Caenorhabditis elegans cosmid C32F... 53 3e-05
AE017346_416(AE017346|pid:none) Cryptococcus neoformans var. neo... 53 3e-05
AK091703_1(AK091703|pid:none) Homo sapiens cDNA FLJ34384 fis, cl... 52 4e-05
AL049480_14(AL049480|pid:none) Arabidopsis thaliana DNA chromoso... 52 4e-05
AK056617_1(AK056617|pid:none) Homo sapiens cDNA FLJ32055 fis, cl... 52 4e-05
AK027707_1(AK027707|pid:none) Homo sapiens cDNA FLJ14801 fis, cl... 52 4e-05
BC027256_1(BC027256|pid:none) Mus musculus oxysterol binding pro... 52 4e-05
AK124037_1(AK124037|pid:none) Homo sapiens cDNA FLJ42043 fis, cl... 52 4e-05
AK128043_1(AK128043|pid:none) Homo sapiens cDNA FLJ46163 fis, cl... 52 4e-05
(Q5R9W4) RecName: Full=Oxysterol-binding protein-related protein... 52 4e-05
AX118917_1(AX118917|pid:none) Sequence 81 from Patent WO0129221.... 52 4e-05
AL050343_7(AL050343|pid:none) Human DNA sequence from clone RP4-... 52 4e-05
AK027535_1(AK027535|pid:none) Homo sapiens cDNA FLJ14629 fis, cl... 52 4e-05
AY622606_2(AY622606|pid:none) Candida dubliniensis MTL alpha 2, ... 52 4e-05
AL049480_13(AL049480|pid:none) Arabidopsis thaliana DNA chromoso... 51 9e-05
AK118071_1(AK118071|pid:none) Arabidopsis thaliana At4g25850 mRN... 51 9e-05
AM270143_14(AM270143|pid:none) Aspergillus niger contig An07c026... 51 9e-05
CP001330_456(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 50 1e-04
AC149130_34(AC149130|pid:none) Medicago truncatula chromosome 2 ... 50 3e-04
(Q9BXB4) RecName: Full=Oxysterol-binding protein-related protein... 50 3e-04
FN318031_1(FN318031|pid:none) Schistosoma japonicum isolate Anhu... 50 3e-04
FN318032_1(FN318032|pid:none) Schistosoma japonicum isolate Anhu... 50 3e-04
AX074158_1(AX074158|pid:none) Sequence 2 from Patent WO0104314. 49 4e-04
AB019233_5(AB019233|pid:none) Arabidopsis thaliana genomic DNA, ... 49 6e-04
BC092369_1(BC092369|pid:none) Xenopus tropicalis osbpl11 protein... 48 0.001
BC088747_1(BC088747|pid:none) Xenopus laevis hypothetical LOC496... 48 0.001
CP000588_357(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 48 0.001
(P0C199) RecName: Full=Protein KES1; 47 0.001
(Q8CI95) RecName: Full=Oxysterol-binding protein-related protein... 47 0.001
BC035278_1(BC035278|pid:none) Mus musculus oxysterol binding pro... 47 0.001
AB070092_1(AB070092|pid:none) Macaca fascicularis testis cDNA cl... 47 0.001
AB208851_1(AB208851|pid:none) Homo sapiens mRNA for oxysterol-bi... 47 0.002
BC168952_1(BC168952|pid:none) Rattus norvegicus oxysterol bindin... 47 0.002
BC034567_1(BC034567|pid:none) Mus musculus oxysterol binding pro... 47 0.002
AC151665_23(AC151665|pid:none) Medicago truncatula clone mth2-7k... 46 0.003
CU633438_317(CU633438|pid:none) Podospora anserina genomic DNA c... 46 0.003
AM270018_3(AM270018|pid:none) Aspergillus niger contig An02c0230... 46 0.003
EU971774_1(EU971774|pid:none) Zea mays clone 370394 unknown mRNA. 46 0.004
AK023074_1(AK023074|pid:none) Homo sapiens cDNA FLJ13012 fis, cl... 45 0.006
(Q86HV4) RecName: Full=Oxysterol-binding protein 6; AltName: Ful... 45 0.006
EF082814_1(EF082814|pid:none) Picea sitchensis clone WS0282_L18 ... 44 0.014
FN392319_1052(FN392319|pid:none) Pichia pastoris GS115 chromosom... 44 0.014
FN357480_15(FN357480|pid:none) Schistosoma mansoni genome sequen... 44 0.018
AK000267_1(AK000267|pid:none) Homo sapiens cDNA FLJ20260 fis, cl... 43 0.031
CU928178_289(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 42 0.040
T40287(T40287)hypothetical protein SPBC354.07c - fission yeast ... 42 0.053
CP000246_941(CP000246|pid:none) Clostridium perfringens ATCC 131... 40 0.26
AP007155_640(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 39 0.34
BC007004_1(BC007004|pid:none) Homo sapiens, Similar to oxysterol... 39 0.45
AY680534_1(AY680534|pid:none) Macaca mulatta clone ss1_k13_t7_31... 39 0.58
(O74178) RecName: Full=Protein kes1; &AL034353_4(AL034353|pid:n... 39 0.58
BT062037_1(BT062037|pid:none) Zea mays full-length cDNA clone ZM... 39 0.58
CU633457_28(CU633457|pid:none) Podospora anserina genomic DNA ch... 39 0.58
AM920435_820(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 28 0.65
CU633867_147(CU633867|pid:none) Podospora anserina genomic DNA c... 38 0.76
AY558047_1(AY558047|pid:none) Saccharomyces cerevisiae clone FLH... 38 0.76
CP001575_381(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 37 1.3
AX886861_1(AX886861|pid:none) Sequence 2724 from Patent EP1033401. 35 1.3
CR548612_129(CR548612|pid:none) Paramecium tetraurelia macronucl... 37 1.7
CP000678_1670(CP000678|pid:none) Methanobrevibacter smithii ATCC... 36 2.9
AM920433_128(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 36 3.8
AL844508_239(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.9
DQ446399_1(DQ446399|pid:none) Arabidopsis thaliana clone pENTR22... 35 6.5
AC007234_5(AC007234|pid:none) Genomic sequence for Arabidopsis t... 35 6.5
DQ652914_1(DQ652914|pid:none) Arabidopsis thaliana clone 0000019... 35 6.5

>(Q54QP6) RecName: Full=Oxysterol-binding protein 8; AltName:
Full=OSBPh;
Length = 402

Score = 421 bits (1083), Expect(2) = e-131
Identities = 250/403 (62%), Positives = 271/403 (67%), Gaps = 33/403 (8%)
Frame = +3

Query: 120 QRKGLLKQLSSYVGKDITSLISLPVWIFEPVSFLQVMSEPLQ*NALLSKASKQDSEFLCL 299
QRKGLLKQLSSYVGKDITSLISLPVWIFEPVSFLQVMSEPLQ NALLSKASKQDSEFLCL
Sbjct: 35 QRKGLLKQLSSYVGKDITSLISLPVWIFEPVSFLQVMSEPLQYNALLSKASKQDSEFLCL 94

Query: 300 AYLAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISED 479
AYLAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISED
Sbjct: 95 AYLAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISED 154

Query: 480 YTLQLETLLKSKFYGNSSEVEIDGTNHFFNKKTNHHYTWNHLVTLLS*HYHWFIMVGSLW 659
YTLQLETLLKSKFYGNSSEVEIDGTNHFFNKKTNHHYTWNHLVT I++GSLW
Sbjct: 155 YTLQLETLLKSKFYGNSSEVEIDGTNHFFNKKTNHHYTWNHLVTCCH-----NIIIGSLW 209

Query: 660 *FSHRKSHY-------R*QGSTQIC*IWLVRCRSLWCHW*KLWIVKVMLDTESLVNGMNP 818
HY GS + L +S W + + ++D E V
Sbjct: 210 -----LDHYGDLVIENHTTGSKAV----LKFAKSGWLGAGRYGVTGEIVDCEGDVR---- 256

Query: 819 FNYSKSWIMVHPLPLPLVFGKPAKNQSIINFYSQD-GSKKTLLISTMNTKR-----YYQS 980
+ + W N+SI F D GS T + +
Sbjct: 257 YRITGKW-----------------NESIQLFQVMDNGSSSTTSTCLWEASKEPINNKFLF 299

Query: 981 PILVLEQIVSL---*KKVTWM--SQLKKEKHNLE---------------EKQREDKRQRV 1100
P V E ++ L KK+ + S+L+ ++ LE EKQREDKRQRV
Sbjct: 300 PRWVEENVIDLNDEYKKILPVTDSRLRADRIALEEGNLDVAAKEKHNLEEKQREDKRQRV 359

Query: 1101 AENKEWETAQFKKVADAKFGYRWNYCGNYWEEREERVKAAASN 1229
AENKEWETAQFKKV DAKFGYRWNYCGNYWEEREERVKAAASN
Sbjct: 360 AENKEWETAQFKKVDDAKFGYRWNYCGNYWEEREERVKAAASN 402

Score = 72.0 bits (175), Expect(2) = e-131
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +2

Query: 20 FQGALNYMKGLVGTNENLQVEESGDNKGDIEPXAKKGFTQTI 145
F GALNYMKGLVGTNENLQVEESGDNKGDIEP +KG + +
Sbjct: 2 FSGALNYMKGLVGTNENLQVEESGDNKGDIEPEQRKGLLKQL 43

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,976,143,226
Number of extensions: 39010957
Number of successful extensions: 105890
Number of sequences better than 10.0: 288
Number of HSP's gapped: 105002
Number of HSP's successfully gapped: 639
Length of query: 465
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 333
Effective length of database: 618,001,159
Effective search space: 205794385947
Effective search space used: 205794385947
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.60 gvh: 0.43 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
16.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U10135-1 is cyt

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0