| Contig-U10128-1 |
| Contig ID |
Contig-U10128-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
766 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
4385405 |
| End point |
4386170 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
6 |
| Number of EST |
5 |
| Link to clone list |
U10128 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.18 |
| Homology vs DNA |
Query= Contig-U10128-1 (Contig-U10128-1Q) /CSM_Contig/Contig-U10128-1Q.Seq.d
(766 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ432848) Dictyostelium discoideum cDNA clone:ddv20e03, 3' ... 1269 0.0 1
(BJ435597) Dictyostelium discoideum cDNA clone:ddv27j17, 3' ... 1181 0.0 2
(BJ431459) Dictyostelium discoideum cDNA clone:ddv14b08, 3' ... 1068 0.0 1
(BJ434771) Dictyostelium discoideum cDNA clone:ddv24n19, 3' ... 876 0.0 1
(AU272372) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 686 0.0 2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 4e-04 16
(AM422018) Candidatus Phytoplasma australiense complete genome. 44 8e-04 18
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 38 0.001 19
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 0.001 17
(CS468836) Sequence 27 from Patent EP1748080. 32 0.001 9
(CS468835) Sequence 26 from Patent EP1748080. 32 0.001 9
(CS419313) Sequence 27 from Patent WO2006094836. 32 0.001 9
(CS419312) Sequence 26 from Patent WO2006094836. 32 0.001 9
(AC115345) Rattus norvegicus clone CH230-108A22, *** SEQUENC... 48 0.004 7
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 42 0.009 14
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.010 19
(BX247888) Zebrafish DNA sequence from clone DKEY-10D15 in l... 40 0.013 11
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.013 12
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 0.014 12
(DW546160) EST_ssal_rgb2_10579 rgb2 Salmo salar cDNA clone s... 44 0.017 2
(CU009252) Equus caballus GSS, BAC clone CH241-78A6, T7 end ... 46 0.019 2
(AC096421) Rattus norvegicus clone CH230-36K20, *** SEQUENCI... 44 0.022 7
(U30821) Cyanophora paradoxa cyanelle, complete genome. 34 0.023 9
(EF568108) Glossina pallidipes salivary gland hypertrophy vi... 42 0.025 13
(AC106619) Rattus norvegicus clone CH230-221E15, *** SEQUENC... 44 0.027 6
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se... 42 0.033 14
(CT867952) Zebrafish DNA sequence from clone DKEY-191G15 in ... 40 0.034 10
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 36 0.034 16
(AX344566) Sequence 17 from Patent WO0200932. 32 0.036 15
(AC159965) Mus musculus chromosome 15, clone RP23-471C16, co... 46 0.036 4
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 38 0.039 19
(AC122110) Mus Musculus Strain C57BL6/J Chromosome 2 BAC, RP... 44 0.039 5
(AC116758) Mus musculus chromosome 8, clone RP23-383A10, com... 44 0.048 5
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 0.048 13
(BX539333) Mouse DNA sequence from clone RP23-138J24 on chro... 44 0.052 6
(AC154674) Mus musculus BAC clone RP24-299A15 from chromosom... 44 0.059 7
(AC135272) Rattus norvegicus clone CH230-269J8, *** SEQUENCI... 44 0.062 8
(AC131232) Mus musculus chromosome 8, clone RP24-376E20, com... 44 0.062 3
(BV055578) S208P6615RE2.T0 129S1/SvImJ Mus musculus STS geno... 46 0.063 2
(AC096135) Rattus norvegicus clone CH230-11E5, *** SEQUENCIN... 46 0.072 6
(AM870999) Venerupis (Ruditapes) decussatus EST, 5' end sequ... 48 0.074 2
(CP000001) Bacillus cereus E33L, complete genome. 36 0.077 19
(CT573015) Mouse DNA sequence from clone RP23-468I6 on chrom... 44 0.080 8
(AC149602) Mus musculus BAC clone RP24-116G21 from chromosom... 46 0.085 5
(DH606680) Rattus norvegicus DNA, BAC clone: RNB1-134I19, 5'... 44 0.086 2
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 36 0.088 11
(AC094299) Rattus norvegicus clone CH230-3I4, *** SEQUENCING... 40 0.091 8
(AL669851) Mouse DNA sequence from clone RP23-18K13 on chrom... 44 0.094 8
(AC097017) Rattus norvegicus clone CH230-2L17, *** SEQUENCIN... 44 0.094 6
(AC098428) Rattus norvegicus clone CH230-2I17, *** SEQUENCIN... 44 0.098 8
(AC140980) Mus musculus BAC clone RP24-255K12 from chromosom... 46 0.098 6
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.098 14
(DD010735) Diagnosis of known genetic Parameters within the ... 36 0.10 14
(BX294195) Mouse DNA sequence from clone RP23-59F2 on chromo... 44 0.10 2
(BX119909) Zebrafish DNA sequence from clone CH211-223I3 in ... 46 0.11 7
(AC121876) Mus musculus BAC clone RP24-127E16 from 6, comple... 44 0.11 6
(AC097556) Rattus norvegicus clone CH230-216H18, *** SEQUENC... 42 0.12 3
(BX001036) Zebrafish DNA sequence from clone CH211-155G22 in... 40 0.12 7
(AL954771) Zebrafish DNA sequence from clone CH211-220B15 in... 42 0.12 6
(AC098260) Rattus norvegicus clone CH230-1L9, *** SEQUENCING... 50 0.12 1
(AZ521941) 200PbC07 Pb MBN #21 Plasmodium berghei genomic 3'... 50 0.12 1
(AC196751) Citrus sinensis clone CSRBBa-018K20, WORKING DRAF... 36 0.12 7
(DD010736) Diagnosis of known genetic Parameters within the ... 34 0.13 16
(AC137108) Mus musculus chromosome 9, clone RP23-277J20, com... 44 0.14 6
(AC229709) Medicago truncatula clone mth2-2f22, WORKING DRAF... 36 0.14 7
(AC118486) Rattus norvegicus clone CH230-276K8, *** SEQUENCI... 46 0.14 4
(AC154774) Mus musculus BAC clone RP24-455C12 from chromosom... 44 0.15 4
(CR450774) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 34 0.15 11
(AC101713) Mus musculus chromosome 15, clone RP23-282L9, com... 44 0.15 4
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.15 13
(AC163679) Mus musculus BAC clone RP24-104E24 from chromosom... 46 0.16 5
(CP000727) Clostridium botulinum A str. Hall, complete genome. 32 0.17 16
(AM434430) Vitis vinifera, whole genome shotgun sequence, co... 38 0.18 4
(AC114009) Mus musculus BAC clone RP23-385K2 from 8, complet... 44 0.19 5
(AC011482) Homo sapiens chromosome 19 clone CTB-135N1, compl... 44 0.19 4
(ED736256) GM_WBb0095J20.f GM_WBb Glycine max genomic clone ... 36 0.19 3
(AC117350) Rattus norvegicus clone CH230-100M3, *** SEQUENCI... 44 0.21 6
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 0.21 15
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 32 0.22 16
(CV552682) TgESTzyq72b11.y4 Tg COUG Tachyzoite cDNA Library ... 38 0.22 2
(AC116576) Mus musculus BAC clone RP23-263J19 from 3, comple... 44 0.23 7
(AC128104) Rattus norvegicus clone CH230-408G8, WORKING DRAF... 46 0.23 4
(AC170904) Mus musculus chromosome 17 clone RP23-310N2, WORK... 44 0.24 6
(AC161267) Mus musculus BAC clone RP23-247F21 from chromosom... 44 0.24 6
(AC121966) Mus musculus BAC clone RP24-267N15 from 12, compl... 40 0.24 7
(BD061520) Genome DNA of symbiotic bacteria of aphid. 32 0.25 15
(AR409405) Sequence 1 from patent US 6632935. 32 0.25 15
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 32 0.25 15
(AC165441) Mus musculus BAC clone RP24-548F24 from chromosom... 44 0.26 4
(AL808011) Mouse DNA sequence from clone RP23-32O21 on chrom... 38 0.27 4
(AC161873) Mus musculus BAC clone RP24-100P9 from chromosome... 46 0.27 4
(DH811958) Rattus norvegicus DNA, BAC clone: RNB1-411J02, 3'... 44 0.27 2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 34 0.28 13
(AC127250) Mus musculus BAC clone RP24-482H23 from chromosom... 44 0.28 6
(AC094383) Rattus norvegicus clone CH230-3P9, *** SEQUENCING... 46 0.28 8
(DH786492) Rattus norvegicus DNA, BAC clone: RNB1-376M10, 5'... 46 0.28 2
(DH562662) Rattus norvegicus DNA, BAC clone: RNB1-075E01, 5'... 46 0.28 2
(G94503) S208P6025FD9.T0 129S1/SvImJ Mus musculus STS genomi... 44 0.28 2
(AM467447) Vitis vinifera, whole genome shotgun sequence, co... 42 0.29 4
(AC126073) Rattus norvegicus clone CH230-520D6, *** SEQUENCI... 38 0.29 5
>(BJ432848) Dictyostelium discoideum cDNA clone:ddv20e03, 3' end,
single read.
Length = 643
Score = 1269 bits (640), Expect = 0.0
Identities = 642/643 (99%)
Strand = Plus / Minus
Query: 9 ttaagtgtaactgtaacttatatttcaattatgtatgcattaaatgtaccaaaaatgtgg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttaagtgtaactgtaacttatatttcaattatgtatgcattaaatgtaccaaaaatgtgg 584
Query: 69 tagagcaaatttaactcaaaattgtaatgctggtgcttatattgattcaaaagtatttgg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tagagcaaatttaactcaaaattgtaatgctggtgcttatattgattcaaaagtatttgg 524
Query: 129 tttaaatataatgaaagaaagtaatttaaatggaccatattataatgatccagaaggttt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tttaaatataatgaaagaaagtaatttaaatggaccatattataatgatccagaaggttt 464
Query: 189 aatttcaacaatgagttcatttattacagcatggatgggattagaatttggtagaatttt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aatttcaacaatgagttcatttattacagcatggatgggattagaatttggtagaatttt 404
Query: 249 tacaagattttataaaaaacatgattttggtaatactgatattattgtaagatggatttt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tacaagattttataaaaaacatgattttggtaatactgatattattgtaagatggatttt 344
Query: 309 attggttattttatttatggtaccagcgatttcattaggtgcaacagttatgccatttaa 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 attggttattttatttatggtaccagcgatttcattaggtgcaacagttatgccatttaa 284
Query: 369 taaaaagatttggagttttagttttgctttatttacagttggtgcaagtggttcattaat 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 taaaaagatttggagttttagttttgctttatttacagttggtgcaagtggttcattaat 224
Query: 429 tttaattgcatttattttaattgatgttattgattgggaatcattaaaatgtgaaaaagt 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tttaattgcatttattttaattgatgttattgattgggaatcattaaaatgtgaaaaagt 164
Query: 489 tagaaaaataatcgatttaattattaaaccaatgaaatggattggtcaaaatccaatcac 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tagaaaaataatcgatttaattattaaaccaatgaaatggattggtcaaaatccaatcac 104
Query: 549 aatctattcattaatggttttcattgaaatcattctaatgtattatattaatgttggttc 608
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 103 aatctattcattaatggttttcattgaaatcattcnaatgtattatattaatgttggttc 44
Query: 609 aaattcactttgggttcaaatttatgaaaaaatgtatttatct 651
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 aaattcactttgggttcaaatttatgaaaaaatgtatttatct 1
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,216,273,613
Number of extensions: 81992181
Number of successful extensions: 7501852
Number of sequences better than 10.0: 4690
Length of query: 766
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 742
Effective length of database: 97,308,875,965
Effective search space: 72203185966030
Effective search space used: 72203185966030
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.27 |
| Homology vs Protein |
Query= Contig-U10128-1 (Contig-U10128-1Q) /CSM_Contig/Contig-U10128-1Q.Seq.d
(766 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EU957615_1(EU957615|pid:none) Zea mays clone 1599217 unknown mRNA. 84 6e-15
AC087551_9(AC087551|pid:none) Oryza sativa (japonica cultivar-gr... 82 2e-14
AK068780_1(AK068780|pid:none) Oryza sativa Japonica Group cDNA c... 80 5e-14
BT035617_1(BT035617|pid:none) Zea mays full-length cDNA clone ZM... 79 2e-13
BT035462_1(BT035462|pid:none) Zea mays full-length cDNA clone ZM... 78 3e-13
AY034969_1(AY034969|pid:none) Arabidopsis thaliana unknown prote... 78 3e-13
AK072076_1(AK072076|pid:none) Oryza sativa Japonica Group cDNA c... 70 7e-12
AC122168_14(AC122168|pid:none) Medicago truncatula clone mth2-4o... 72 2e-11
CP000828_4271(CP000828|pid:none) Acaryochloris marina MBIC11017,... 71 4e-11
CR855110_6(CR855110|pid:none) Oryza sativa genomic DNA, chromoso... 69 2e-10
AL607005_13(AL607005|pid:none) Oryza sativa genomic DNA, chromos... 69 2e-10
CP000083_389(CP000083|pid:none) Colwellia psychrerythraea 34H, c... 69 2e-10
BT068735_1(BT068735|pid:none) Zea mays full-length cDNA clone ZM... 69 2e-10
EU968414_1(EU968414|pid:none) Zea mays clone 320577 hypothetical... 69 2e-10
BT055229_1(BT055229|pid:none) Zea mays full-length cDNA clone ZM... 69 2e-10
BT055022_1(BT055022|pid:none) Zea mays full-length cDNA clone ZM... 68 3e-10
BT036311_1(BT036311|pid:none) Zea mays full-length cDNA clone ZM... 68 3e-10
EU968515_1(EU968515|pid:none) Zea mays clone 321713 hypothetical... 62 2e-08
AM425744_2(AM425744|pid:none) Vitis vinifera contig VV78X269838.... 62 2e-08
CP001032_999(CP001032|pid:none) Opitutus terrae PB90-1, complete... 61 4e-08
CP000302_2685(CP000302|pid:none) Shewanella denitrificans OS217,... 58 3e-07
CP000685_4936(CP000685|pid:none) Flavobacterium johnsoniae UW101... 58 4e-07
CP000961_1305(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 57 6e-07
AM180355_2859(AM180355|pid:none) Clostridium difficile 630 compl... 48 1e-06
CP001252_3150(CP001252|pid:none) Shewanella baltica OS223, compl... 56 1e-06
AE014299_3408(AE014299|pid:none) Shewanella oneidensis MR-1, com... 56 1e-06
CP000753_1126(CP000753|pid:none) Shewanella baltica OS185, compl... 55 2e-06
CP000821_1212(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 55 2e-06
CR749838_1(CR749838|pid:none) Homo sapiens mRNA; cDNA DKFZp686G2... 55 3e-06
AK057293_1(AK057293|pid:none) Homo sapiens cDNA FLJ32731 fis, cl... 55 3e-06
CP000891_1175(CP000891|pid:none) Shewanella baltica OS195, compl... 54 4e-06
CP000444_2992(CP000444|pid:none) Shewanella sp. MR-7, complete g... 54 4e-06
CP000117_3735(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 54 4e-06
CP000446_2921(CP000446|pid:none) Shewanella sp. MR-4, complete g... 54 4e-06
CP000469_3090(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 54 5e-06
AK159649_1(AK159649|pid:none) Mus musculus osteoclast-like cell ... 54 7e-06
AK035264_1(AK035264|pid:none) Mus musculus adult male urinary bl... 54 7e-06
AE008923_707(AE008923|pid:none) Xanthomonas axonopodis pv. citri... 53 1e-05
CP000507_942(CP000507|pid:none) Shewanella amazonensis SB2B, com... 52 2e-05
CP000139_2141(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 52 3e-05
CP000140_2936(CP000140|pid:none) Parabacteroides distasonis ATCC... 51 5e-05
CP000681_1071(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 50 1e-04
CP001037_2601(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 49 1e-04
CP000473_2774(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 49 2e-04
CP000140_1306(CP000140|pid:none) Parabacteroides distasonis ATCC... 49 2e-04
AE010300_773(AE010300|pid:none) Leptospira interrogans serovar l... 47 5e-04
CP001111_3414(CP001111|pid:none) Stenotrophomonas maltophilia R5... 47 9e-04
CP000472_3537(CP000472|pid:none) Shewanella piezotolerans WP3, c... 46 0.001
AM262939_1(AM262939|pid:none) Phillyrea latifolia partial mRNA f... 45 0.002
AP009153_512(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DNA... 45 0.003
CP000282_3031(CP000282|pid:none) Saccharophagus degradans 2-40, ... 45 0.003
CP000685_3096(CP000685|pid:none) Flavobacterium johnsoniae UW101... 44 0.004
CP000348_587(CP000348|pid:none) Leptospira borgpetersenii serova... 44 0.006
AE017354_1633(AE017354|pid:none) Legionella pneumophila subsp. p... 43 0.010
AC135459_8(AC135459|pid:none) Oryza sativa (japonica cultivar-gr... 42 0.016
CP000851_1101(CP000851|pid:none) Shewanella pealeana ATCC 700345... 41 0.047
AY065508_1(AY065508|pid:none) Mus musculus vomeronasal receptor ... 39 0.18
AM458673_2(AM458673|pid:none) Vitis vinifera contig VV78X265992.... 37 0.52
CP000312_1911(CP000312|pid:none) Clostridium perfringens SM101, ... 37 0.52
AE015928_1415(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 37 0.89
DQ273698_3(DQ273698|pid:none) Crocodylus porosus mitochondrion, ... 36 1.5
AB016886_24(AB016886|pid:none) Arabidopsis thaliana genomic DNA,... 36 1.5
FJ434549_1(FJ434549|pid:none) Lagocephalus inermis cytochrome c ... 35 2.0
AM493868_3(AM493868|pid:none) Osteolaemus tetraspis complete mit... 35 2.0
EF551001_3(EF551001|pid:none) Osteolaemus tetraspis mitochondrio... 35 2.0
CP001056_677(CP001056|pid:none) Clostridium botulinum B str. Ekl... 35 2.0
EF551000_3(EF551000|pid:none) Mecistops cataphractus mitochondri... 35 2.6
CU468135_1437(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 35 3.4
AE009948_2115(AE009948|pid:none) Streptococcus agalactiae 2603V/... 35 3.4
EU016196_10(EU016196|pid:none) Friesea grisea mitochondrion, com... 35 3.4
AB300500_6(AB300500|pid:none) Walchia hayashii mitochondrial DNA... 35 3.4
AJ810453_3(AJ810453|pid:none) Crocodylus porosus complete mitoch... 34 4.4
EF156850_1(EF156850|pid:none) Heteromys desmarestianus LSUMZ 363... 34 4.4
AJ421452_2(AJ421452|pid:none) Macroscelides proboscideus complet... 34 4.4
CP001472_3338(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 34 5.8
AF267473_1(AF267473|pid:none) Tetraopes melanurus cytochrome oxi... 34 5.8
DQ026430_3(DQ026430|pid:none) Rhodeus ocellatus voucher IHB rsp0... 34 5.8
CP000246_2189(CP000246|pid:none) Clostridium perfringens ATCC 13... 34 5.8
CP000081_493(CP000081|pid:none) Leishmania major chromosome 35, ... 34 5.8
AJ010592_27(AJ010592|pid:none) Guillardia theta DNA for complete... 34 5.8
AB017355_9(AB017355|pid:none) Streptococcus agalactiae DNA, cps ... 34 5.8
(Q68WZ5) RecName: Full=3-deoxy-manno-octulosonate cytidylyltrans... 33 7.5
DQ768215_1(DQ768215|pid:none) Anoplophora glabripennis mitochond... 33 7.5
AP009552_3668(AP009552|pid:none) Microcystis aeruginosa NIES-843... 33 7.5
AB050723_8(AB050723|pid:none) Streptococcus agalactiae cpsIbD, c... 33 7.5
AY553353_1(AY553353|pid:none) Chrysolina virgata isolate N580 cy... 33 7.5
AY553337_1(AY553337|pid:none) Chrysolina virgata isolate N340 cy... 33 7.5
AY553338_1(AY553338|pid:none) Chrysolina virgata isolate N342 cy... 33 7.5
AF337958_12(AF337958|pid:none) Streptococcus agalactiae strain N... 33 7.5
(O00909) RecName: Full=ADP-ribosylation factor 1; &AJ000063_1(A... 33 9.8
CP000524_153(CP000524|pid:none) Bartonella bacilliformis KC583, ... 33 9.8
AM448932_6(AM448932|pid:none) Vitis vinifera contig VV78X114050.... 33 9.8
CP001098_377(CP001098|pid:none) Halothermothrix orenii H 168, co... 33 9.8
CU928176_607(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 33 9.8
AY513403_1(AY513403|pid:none) Notocera sp. CPL-2004b cytochrome ... 33 9.8
AB238965_3(AB238965|pid:none) Barbus barbus mitochondrial DNA, c... 33 9.8
AE017199_62(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, com... 33 9.8
>EU957615_1(EU957615|pid:none) Zea mays clone 1599217 unknown mRNA.
Length = 359
Score = 83.6 bits (205), Expect = 6e-15
Identities = 62/236 (26%), Positives = 113/236 (47%), Gaps = 32/236 (13%)
Frame = +1
Query: 61 KCG-RANLTQNCNAGAYIDSKVFGLNIM-------------KESNLNGPYYND------- 177
+CG R L CNA YID +V G+N M +S GP+ ND
Sbjct: 115 RCGTRGALDPPCNAVGYIDRRVLGINHMYQKPAWRRHRACTDDSPHEGPFRNDAPAWCVA 174
Query: 178 ---PEGLISTMSSFITAWMGLEFGRIFTRFYKKHDFGNTDIIVRWILLVILFMVPAISLG 348
PEG++S++S+ ++ +G+ +G + H +TD + +W+ + + +V I L
Sbjct: 175 PFEPEGILSSLSAVLSTVIGVHYGHVLV-----HMKSHTDRLRQWVTMAVALLVLGIVLH 229
Query: 349 AT-VMPFNKKIWSFSFALFTVGASGSLILIAFILIDVIDWESLKCEKVRKIIDLIIKPMK 525
+ +P NK++++FS+ T GA+G + + L+DV+ + P++
Sbjct: 230 FSHAIPLNKQLYTFSYICVTAGAAGVVFSALYFLVDVVS------------LRYAFAPLR 277
Query: 526 WIGQNPITIYSLM---VFIEIILMYYINVGSNSL--WVQ--IYEKMYLSWSKKWLL 672
W+G N + +Y + VF + +Y +N+L WV+ ++ K++ S S LL
Sbjct: 278 WVGMNAMLVYVMAAEGVFEGFLNGWYYESTNNTLVYWVRKHVFVKVWHSTSVGILL 333
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,142,565,802
Number of extensions: 22561886
Number of successful extensions: 56618
Number of sequences better than 10.0: 97
Number of HSP's gapped: 56560
Number of HSP's successfully gapped: 99
Length of query: 255
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 129
Effective length of database: 637,226,869
Effective search space: 82202266101
Effective search space used: 82202266101
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
4 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
1 |
| FC-IC (SUB) |
1 |