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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10097-1
Contig ID Contig-U10097-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10097-1 (Contig-U10097-1Q) /CSM_Contig/Contig-U10097-1Q.Seq.d
ATATATTATAACTTTGAAAATGTTATTTTCCAAAATTTTATTGGCCTTAG
CCTTAATTATCTCAGTCGTTTATGTTAACGCAGTTCCAGACATTTGCGTA
CTCTCTTCTGATTGCTCAAACACTCAATATTGTTCAGGAGGTTATTGTGT
TCCAGGTAGATCTTAATACCGATTGTGGATTAAACGAGTTCTGTTCATCA
AATATTTCCGATCTCAATGAATTTGGTTCCCTGTAAAAAATTCGATAAGG
ATGGTGATGATTGTATTGCTTACAAAAACGTCGAAGCTTCTAATCTTTTA
ACCTCAAATTCAACCAAATGTGCATACATGTATTTCAACTATGCTTATGC
CAATAACCCAGCTGGTCAATTAAATGTTGACTATCAAGGTACTTGTGTCA
ATGGTAAATGTAGAATTTGTAATTATGCTAACGGTGGTTCCTACACTGCT
GAAGGTAAAGGTGCCCCAAGAACTTGTGTATTCCCAGGTAAATTCGCAAC
TGTCCACTCTTCAAGCTGGTCTGCTGGTAGATACTATGAAGAACCAATCC
AAGTTTGGTTAGCAATTTTCTTCTGTTTAATTGTTTTAATTTTAGCTTTC
CACGTCATGGGTTTCTTAAAGAAATAATAAATATCGATTTGTAAAATAGT
ATTTCTTTTTTTTGTAATTAATACTATATAATGTTCATCAAATATTTTCG
ATCTCAATGAATTTGGTTCCCTGTAAAAAATTCGATAAGGATGGTGATGA
TTGTATTGCTTACAAAAACGTCGAAGCTTCTAATCTTTTAACCTCAAATT
CAACCAAATGTGCATACATGTATTTCAACTATGCTTATGCCAATAACCCA
GCTGGTCAATTAAATGTTGACTATCAAGGTACTTGTGTCAATGGTAAATG
TAGAATTTGTAATTATGCTAACGGTGGTTCCTACACTGCTGAAGGTAAAG
GTGCCCCAAGAACTTGTGTATTCCCAGGTAAATTCGCAACTGTCCACTCT
TCAAGCTGGTCTGCTGGTAGATACTATGAAGAACCAATCCAAGTTTGGTT
AGCAATTTTCTTCTGTTTAATTGTTTTAATTTTAGCTTTCCACGTCATGG
GTTTCTTAAAGAAATAATAAATATCGATTTGTAAAATAGTATTTCTTTTT
TTTGTAATTAATACTATATA
Gap no gap
Contig length 1170
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2331998
End point 2332824
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 6
Link to clone list U10097
List of clone(s) 

est1=FC-IC0108F,1,288
est2=SSB156Z,90,658
est3=SSA794Z,98,1077
est4=SSL239Z,99,355
est5=SSL239F,453,777
est6=SSL240F,453,777
Translated Amino Acid sequence 
yiitlkmlfskillalaliisvvyvnavpdicvlssdcsntqycsggycvpgrs*yrlwi
krvlfikyfrsq*iwfpvknsirmvmivlltktskllif*pqiqpnvhtcistmlmpitq
lvn*mltikvlvsmvnvefvimltvvptllkvkvpqelvysqvnsqlstlqagllvdtmk
nqskfg*qfssv*lf*f*lstswvs*rnnkyrfvk*yfffl*LILYNVHQIFSISMNLVP
CKKFDKDGDDCIAYKNVEASNLLTSNSTKCAYMYFNYAYANNPAGQLNVDYQGTCVNGKC
RICNYANGGSYTAEGKGAPRTCVFPGKFATVHSSSWSAGRYYEEPIQVWLAIFFCLIVLI
LAFHVMGFLKK**isickivflffvinti
Translated Amino Acid sequence (All Frames) 
Frame A:
iyynfenvifqnfiglslnylsrlc*rssrhlrtlf*llkhsilfrrllcsr*ilipivd
*tssvhqifpismnlvpckkfdkdgddciayknveasnlltsnstkcaymyfnyayannp
agqlnvdyqgtcvngkcricnyanggsytaegkgaprtcvfpgkfatvhssswsagryye
epiqvwlaiffclivlilafhvmgflkk**isickivflffvinti*cssnifdlnefgs
l*kir*gw**lyclqkrrsf*sfnlkfnqmcihvfqlclcq*pswsikc*lsrylcqw*m
*nl*lc*rwflhc*r*rcpknlcipr*irncplfklvcw*il*rtnpslvsnfllfncfn
fsfprhgflkeiinidl*nsisffcn*yyi


Frame B:
yiitlkmlfskillalaliisvvyvnavpdicvlssdcsntqycsggycvpgrs*yrlwi
krvlfikyfrsq*iwfpvknsirmvmivlltktskllif*pqiqpnvhtcistmlmpitq
lvn*mltikvlvsmvnvefvimltvvptllkvkvpqelvysqvnsqlstlqagllvdtmk
nqskfg*qfssv*lf*f*lstswvs*rnnkyrfvk*yfffl*LILYNVHQIFSISMNLVP
CKKFDKDGDDCIAYKNVEASNLLTSNSTKCAYMYFNYAYANNPAGQLNVDYQGTCVNGKC
RICNYANGGSYTAEGKGAPRTCVFPGKFATVHSSSWSAGRYYEEPIQVWLAIFFCLIVLI
LAFHVMGFLKK**isickivflffvinti


Frame C:
il*l*kcyfpkfywp*p*lsqsfmltqfqtfayslliaqtlnivqevivfqvdlntdcgl
nefcssnisdlnefgsl*kir*gw**lyclqkrrsf*sfnlkfnqmcihvfqlclcq*ps
wsikc*lsrylcqw*m*nl*lc*rwflhc*r*rcpknlcipr*irncplfklvcw*il*r
tnpslvsnfllfncfnfsfprhgflkeiinidl*nsisffcn*yyimfikyfrsq*iwfp
vknsirmvmivlltktskllif*pqiqpnvhtcistmlmpitqlvn*mltikvlvsmvnv
efvimltvvptllkvkvpqelvysqvnsqlstlqagllvdtmknqskfg*qfssv*lf*f
*lstswvs*rnnkyrfvk*yfffl*lily
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10097-1 (Contig-U10097-1Q)
/CSM_Contig/Contig-U10097-1Q.Seq.d
         (1170 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10097-1 (Contig-U10097-1Q) /CSM_Contig/Conti...  2224  0.0
Contig-U01657-1 (Contig-U01657-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11456-1 (Contig-U11456-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Conti...    36  0.083
Contig-U04539-1 (Contig-U04539-1Q) /CSM_Contig/Conti...    36  0.083
Contig-U11841-1 (Contig-U11841-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U11662-1 (Contig-U11662-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U10778-1 (Contig-U10778-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U09791-1 (Contig-U09791-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U01934-1 (Contig-U01934-1Q) /CSM_Contig/Conti...    34  0.33

>Contig-U10097-1 (Contig-U10097-1Q) /CSM_Contig/Contig-U10097-1Q.Seq.d
          Length = 1170

 Score = 2224 bits (1122), Expect = 0.0
 Identities = 1154/1170 (98%)
 Strand = Plus / Plus

                                                                        
Query: 1    atatattataactttgaaaatgttattttccaaaattttattggccttagccttaattat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    atatattataactttgaaaatgttattttccaaaattttattggccttagccttaattat 60

                                                                        
Query: 61   ctcagtcgtttatgttaacgcagttccagacatttgcgtactctcttctgattgctcaaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ctcagtcgtttatgttaacgcagttccagacatttgcgtactctcttctgattgctcaaa 120

                                                                        
Query: 121  cactcaatattgttcaggaggttattgtgttccaggtagatcttaataccgattgtggat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  cactcaatattgttcaggaggttattgtgttccaggtagatcttaataccgattgtggat 180

                                                                        
Query: 181  taaacgagttctgttcatcaaatatttccgatctcaatgaatttggttccctgtaaaaaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  taaacgagttctgttcatcaaatatttccgatctcaatgaatttggttccctgtaaaaaa 240

                                                                        
Query: 241  ttcgataaggatggtgatgattgtattgcttacaaaaacgtcgaagcttctaatctttta 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ttcgataaggatggtgatgattgtattgcttacaaaaacgtcgaagcttctaatctttta 300

                                                                        
Query: 301  acctcaaattcaaccaaatgtgcatacatgtatttcaactatgcttatgccaataaccca 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  acctcaaattcaaccaaatgtgcatacatgtatttcaactatgcttatgccaataaccca 360

                                                                        
Query: 361  gctggtcaattaaatgttgactatcaaggtacttgtgtcaatggtaaatgtagaatttgt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  gctggtcaattaaatgttgactatcaaggtacttgtgtcaatggtaaatgtagaatttgt 420

                                                                        
Query: 421  aattatgctaacggtggttcctacactgctgaaggtaaaggtgccccaagaacttgtgta 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  aattatgctaacggtggttcctacactgctgaaggtaaaggtgccccaagaacttgtgta 480

                                                                        
Query: 481  ttcccaggtaaattcgcaactgtccactcttcaagctggtctgctggtagatactatgaa 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ttcccaggtaaattcgcaactgtccactcttcaagctggtctgctggtagatactatgaa 540

                                                                        
Query: 541  gaaccaatccaagtttggttagcaattttcttctgtttaattgttttaattttagctttc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  gaaccaatccaagtttggttagcaattttcttctgtttaattgttttaattttagctttc 600

                                                                        
Query: 601  cacgtcatgggtttcttaaagaaataataaatatcgatttgtaaaatagtatttcnnnnn 660
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 601  cacgtcatgggtttcttaaagaaataataaatatcgatttgtaaaatagtatttcttttt 660

                                                                        
Query: 661  nnngtaattaatactatataatgttcatcaaatattttcgatctcaatgaatttggttcc 720
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  tttgtaattaatactatataatgttcatcaaatattttcgatctcaatgaatttggttcc 720

                                                                        
Query: 721  ctgtaaaaaattcgataaggatggtgatgattgtattgcttacaaaaacgtcgaagcttc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  ctgtaaaaaattcgataaggatggtgatgattgtattgcttacaaaaacgtcgaagcttc 780

                                                                        
Query: 781  taatcttttaacctcaaattcaaccaaatgtgcatacatgtatttcaactatgcttatgc 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  taatcttttaacctcaaattcaaccaaatgtgcatacatgtatttcaactatgcttatgc 840

                                                                        
Query: 841  caataacccagctggtcaattaaatgttgactatcaaggtacttgtgtcaatggtaaatg 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  caataacccagctggtcaattaaatgttgactatcaaggtacttgtgtcaatggtaaatg 900

                                                                        
Query: 901  tagaatttgtaattatgctaacggtggttcctacactgctgaaggtaaaggtgccccaag 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tagaatttgtaattatgctaacggtggttcctacactgctgaaggtaaaggtgccccaag 960

                                                                        
Query: 961  aacttgtgtattcccaggtaaattcgcaactgtccactcttcaagctggtctgctggtag 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  aacttgtgtattcccaggtaaattcgcaactgtccactcttcaagctggtctgctggtag 1020

                                                                        
Query: 1021 atactatgaagaaccaatccaagtttggttagcaattttcttctgtttaattgttttaat 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 atactatgaagaaccaatccaagtttggttagcaattttcttctgtttaattgttttaat 1080

                                                                        
Query: 1081 tttagctttccacgtcatgggtttcttaaagaaataataaatatcgatttgtaaaatagt 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tttagctttccacgtcatgggtttcttaaagaaataataaatatcgatttgtaaaatagt 1140

                                          
Query: 1141 atttcnnnnnnnngtaattaatactatata 1170
            |||||        |||||||||||||||||
Sbjct: 1141 atttcttttttttgtaattaatactatata 1170


>Contig-U01657-1 (Contig-U01657-1Q) /CSM_Contig/Contig-U01657-1Q.Seq.d
          Length = 1051

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 565 attttcttctgtttaattgttttaat 590
           ||||| ||||||||||||||||||||
Sbjct: 377 atttttttctgtttaattgttttaat 352


 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1055 attttcttctgtttaattgttttaat 1080
            ||||| ||||||||||||||||||||
Sbjct: 377  atttttttctgtttaattgttttaat 352


>Contig-U11456-1 (Contig-U11456-1Q) /CSM_Contig/Contig-U11456-1Q.Seq.d
          Length = 1341

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 576  tttaattgttttaatttta 594
            |||||||||||||||||||
Sbjct: 1315 tttaattgttttaatttta 1297


 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1066 tttaattgttttaatttta 1084
            |||||||||||||||||||
Sbjct: 1315 tttaattgttttaatttta 1297


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,223
Number of Sequences: 6905
Number of extensions: 14223
Number of successful extensions: 1479
Number of sequences better than 10.0: 84
length of query: 1170
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1154
effective length of database: 5,564,391
effective search space: 6421307214
effective search space used: 6421307214
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA 
Query= Contig-U10097-1 (Contig-U10097-1Q) /CSM_Contig/Contig-U10097-1Q.Seq.d
         (1170 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037042) Dictyostelium discoideum slug cDNA, clone SSA794.      955   0.0    3
(C25674) Dictyostelium discoideum slug cDNA, clone SSB156.        829   0.0    3
(AU271350) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   303   e-133  3
(AU038607) Dictyostelium discoideum slug cDNA, clone SSL239.      460   e-129  2
(AU074542) Dictyostelium discoideum slug cDNA, clone SSL240.      307   e-108  2
(AU074541) Dictyostelium discoideum slug cDNA, clone SSL239.      307   e-108  2
(FG252229) CBYF541.g1 CBYF Cercospora zeae-maydis conidiatio...    58   3e-18  4
(FG252228) CBYF541.b1 CBYF Cercospora zeae-maydis conidiatio...    58   2e-16  4
(AM456120) Vitis vinifera contig VV78X196189.5, whole genome...    44   0.043  2
(AM478191) Vitis vinifera contig VV78X001741.5, whole genome...    38   0.076  2
(AM438453) Vitis vinifera contig VV78X006642.5, whole genome...    38   0.088  2
(AM474508) Vitis vinifera contig VV78X086049.5, whole genome...    38   0.13   2
(AM451831) Vitis vinifera contig VV78X054207.7, whole genome...    38   0.19   2
(AM426332) Vitis vinifera contig VV78X121601.3, whole genome...    38   0.19   2
(AM455811) Vitis vinifera contig VV78X246624.6, whole genome...    38   0.20   2
(AM482550) Vitis vinifera contig VV78X182093.5, whole genome...    38   0.23   2
(AM478855) Vitis vinifera contig VV78X272116.5, whole genome...    38   0.26   2
(AM093901) Lutzomyia longipalpis EST clone NSFM-12f06, seque...    42   0.32   2
(AM093899) Lutzomyia longipalpis EST clone NSFM-39h01, seque...    42   0.33   2
(AC148446) Medicago truncatula chromosome 2 clone mth2-58i9,...    36   0.48   3
(AL928749) Oryza sativa chromosome 12, . BAC OSJNBa0002O20 o...    40   0.49   3
(CE570907) tigr-gss-dog-17000327509057 Dog Library Canis lup...    36   0.62   2
(CE403354) tigr-gss-dog-17000334746563 Dog Library Canis lup...    36   0.63   2
(BX511193) Zebrafish DNA sequence from clone DKEY-149J18 in ...    48   0.76   1
(AF175768) Dictyostelium discoideum SAPLIP C protein mRNA, c...    48   0.76   1
(AC106464) Rattus norvegicus clone CH230-209K23, *** SEQUENC...    48   0.76   1
(AV674350) Ciona intestinalis cDNA clone:citb15e19 : 5' end,...    48   0.76   1
(CT014932) KBrH123K20 genomic clone, KBrH (HindIII) BAC libr...    36   0.76   2
(AC098593) Homo sapiens BAC clone RP11-439K15 from 4, comple...    32   1.1    9
(AM439733) Vitis vinifera contig VV78X109517.9, whole genome...    38   1.4    2
(AF439352) Choristoneura fumiferana granulovirus, partial ge...    46   1.6    3
(AM435709) Vitis vinifera contig VV78X090119.4, whole genome...    38   1.8    2
(CT963134) M.truncatula DNA sequence from clone MTH2-30E17 o...    36   1.8    6
(DQ333351) Choristoneura occidentalis granulovirus, complete...    46   3.0    1
(U94289) Anopheles balabacensis cytochrome c oxidase subunit...    46   3.0    1
(AY948341) Anopheles dirus A voucher DL43 cytochrome oxidase...    46   3.0    1
(AJ877577) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877576) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877575) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877574) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877573) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877572) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877571) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877570) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877569) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877567) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877566) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877565) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877564) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877563) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877562) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877561) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877560) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877559) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877558) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877557) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877556) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877555) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877554) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877553) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877552) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877551) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877550) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877549) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877548) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877547) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877546) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877545) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877544) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877543) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877542) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877541) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877540) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877539) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877538) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877537) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877536) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877535) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877534) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877533) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877532) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877531) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877530) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877529) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877528) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877527) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877526) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877525) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877524) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877523) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877522) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877521) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877520) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877519) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877518) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877517) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877516) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877515) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877514) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1
(AJ877513) Anopheles dirus D mitochondrial partial COI gene ...    46   3.0    1

>(AU037042) Dictyostelium discoideum slug cDNA, clone SSA794.
          Length = 980

 Score =  955 bits (482), Expect(3) = 0.0
 Identities = 482/482 (100%)
 Strand = Plus / Plus


Query: 664  gtaattaatactatataatgttcatcaaatattttcgatctcaatgaatttggttccctg 723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473  gtaattaatactatataatgttcatcaaatattttcgatctcaatgaatttggttccctg 532


Query: 724  taaaaaattcgataaggatggtgatgattgtattgcttacaaaaacgtcgaagcttctaa 783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533  taaaaaattcgataaggatggtgatgattgtattgcttacaaaaacgtcgaagcttctaa 592


Query: 784  tcttttaacctcaaattcaaccaaatgtgcatacatgtatttcaactatgcttatgccaa 843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593  tcttttaacctcaaattcaaccaaatgtgcatacatgtatttcaactatgcttatgccaa 652


Query: 844  taacccagctggtcaattaaatgttgactatcaaggtacttgtgtcaatggtaaatgtag 903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653  taacccagctggtcaattaaatgttgactatcaaggtacttgtgtcaatggtaaatgtag 712


Query: 904  aatttgtaattatgctaacggtggttcctacactgctgaaggtaaaggtgccccaagaac 963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  aatttgtaattatgctaacggtggttcctacactgctgaaggtaaaggtgccccaagaac 772


Query: 964  ttgtgtattcccaggtaaattcgcaactgtccactcttcaagctggtctgctggtagata 1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  ttgtgtattcccaggtaaattcgcaactgtccactcttcaagctggtctgctggtagata 832


Query: 1024 ctatgaagaaccaatccaagtttggttagcaattttcttctgtttaattgttttaatttt 1083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  ctatgaagaaccaatccaagtttggttagcaattttcttctgtttaattgttttaatttt 892


Query: 1084 agctttccacgtcatgggtttcttaaagaaataataaatatcgatttgtaaaatagtatt 1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  agctttccacgtcatgggtttcttaaagaaataataaatatcgatttgtaaaatagtatt 952


Query: 1144 tc 1145
            ||
Sbjct: 953  tc 954

 Score =  912 bits (460), Expect(3) = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Plus


Query: 192 tgttcatcaaatatttccgatctcaatgaatttggttccctgtaaaaaattcgataagga 251
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgttcatcaaatattttcgatctcaatgaatttggttccctgtaaaaaattcgataagga 60


Query: 252 tggtgatgattgtattgcttacaaaaacgtcgaagcttctaatcttttaacctcaaattc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggtgatgattgtattgcttacaaaaacgtcgaagcttctaatcttttaacctcaaattc 120


Query: 312 aaccaaatgtgcatacatgtatttcaactatgcttatgccaataacccagctggtcaatt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaccaaatgtgcatacatgtatttcaactatgcttatgccaataacccagctggtcaatt 180


Query: 372 aaatgttgactatcaaggtacttgtgtcaatggtaaatgtagaatttgtaattatgctaa 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatgttgactatcaaggtacttgtgtcaatggtaaatgtagaatttgtaattatgctaa 240


Query: 432 cggtggttcctacactgctgaaggtaaaggtgccccaagaacttgtgtattcccaggtaa 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cggtggttcctacactgctgaaggtaaaggtgccccaagaacttgtgtattcccaggtaa 300


Query: 492 attcgcaactgtccactcttcaagctggtctgctggtagatactatgaagaaccaatcca 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attcgcaactgtccactcttcaagctggtctgctggtagatactatgaagaaccaatcca 360


Query: 552 agtttggttagcaattttcttctgtttaattgttttaattttagctttccacgtcatggg 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtttggttagcaattttcttctgtttaattgttttaattttagctttccacgtcatggg 420


Query: 612 tttcttaaagaaataataaatatcgatttgtaaaatagtatttc 655
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttcttaaagaaataataaatatcgatttgtaaaatagtatttc 464

 Score = 34.2 bits (17), Expect(3) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 1154 gtaattaatactatata 1170
            |||||||||||||||||
Sbjct: 963  gtaattaatactatata 979

 Score =  920 bits (464), Expect(2) = 0.0
 Identities = 464/464 (100%)
 Strand = Plus / Plus


Query: 682  tgttcatcaaatattttcgatctcaatgaatttggttccctgtaaaaaattcgataagga 741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tgttcatcaaatattttcgatctcaatgaatttggttccctgtaaaaaattcgataagga 60


Query: 742  tggtgatgattgtattgcttacaaaaacgtcgaagcttctaatcttttaacctcaaattc 801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tggtgatgattgtattgcttacaaaaacgtcgaagcttctaatcttttaacctcaaattc 120


Query: 802  aaccaaatgtgcatacatgtatttcaactatgcttatgccaataacccagctggtcaatt 861
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aaccaaatgtgcatacatgtatttcaactatgcttatgccaataacccagctggtcaatt 180


Query: 862  aaatgttgactatcaaggtacttgtgtcaatggtaaatgtagaatttgtaattatgctaa 921
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aaatgttgactatcaaggtacttgtgtcaatggtaaatgtagaatttgtaattatgctaa 240


Query: 922  cggtggttcctacactgctgaaggtaaaggtgccccaagaacttgtgtattcccaggtaa 981
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  cggtggttcctacactgctgaaggtaaaggtgccccaagaacttgtgtattcccaggtaa 300


Query: 982  attcgcaactgtccactcttcaagctggtctgctggtagatactatgaagaaccaatcca 1041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  attcgcaactgtccactcttcaagctggtctgctggtagatactatgaagaaccaatcca 360


Query: 1042 agtttggttagcaattttcttctgtttaattgttttaattttagctttccacgtcatggg 1101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  agtttggttagcaattttcttctgtttaattgttttaattttagctttccacgtcatggg 420


Query: 1102 tttcttaaagaaataataaatatcgatttgtaaaatagtatttc 1145
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  tttcttaaagaaataataaatatcgatttgtaaaatagtatttc 464

 Score = 34.2 bits (17), Expect(2) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 1154 gtaattaatactatata 1170
            |||||||||||||||||
Sbjct: 473  gtaattaatactatata 489

 Score =  912 bits (460), Expect(2) = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Plus


Query: 192 tgttcatcaaatatttccgatctcaatgaatttggttccctgtaaaaaattcgataagga 251
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgttcatcaaatattttcgatctcaatgaatttggttccctgtaaaaaattcgataagga 550


Query: 252 tggtgatgattgtattgcttacaaaaacgtcgaagcttctaatcttttaacctcaaattc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tggtgatgattgtattgcttacaaaaacgtcgaagcttctaatcttttaacctcaaattc 610


Query: 312 aaccaaatgtgcatacatgtatttcaactatgcttatgccaataacccagctggtcaatt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aaccaaatgtgcatacatgtatttcaactatgcttatgccaataacccagctggtcaatt 670


Query: 372 aaatgttgactatcaaggtacttgtgtcaatggtaaatgtagaatttgtaattatgctaa 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaatgttgactatcaaggtacttgtgtcaatggtaaatgtagaatttgtaattatgctaa 730


Query: 432 cggtggttcctacactgctgaaggtaaaggtgccccaagaacttgtgtattcccaggtaa 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cggtggttcctacactgctgaaggtaaaggtgccccaagaacttgtgtattcccaggtaa 790


Query: 492 attcgcaactgtccactcttcaagctggtctgctggtagatactatgaagaaccaatcca 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 attcgcaactgtccactcttcaagctggtctgctggtagatactatgaagaaccaatcca 850


Query: 552 agtttggttagcaattttcttctgtttaattgttttaattttagctttccacgtcatggg 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 agtttggttagcaattttcttctgtttaattgttttaattttagctttccacgtcatggg 910


Query: 612 tttcttaaagaaataataaatatcgatttgtaaaatagtatttc 655
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 tttcttaaagaaataataaatatcgatttgtaaaatagtatttc 954

 Score = 36.2 bits (18), Expect(2) = 0.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus


Query: 664 gtaattaatactatataa 681
           ||||||||||||||||||
Sbjct: 963 gtaattaatactatataa 980

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,328,212,909
Number of extensions: 77895445
Number of successful extensions: 6382935
Number of sequences better than 10.0: 357
Length of query: 1170
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1146
Effective length of database: 97,308,875,965
Effective search space: 111515971855890
Effective search space used: 111515971855890
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.27
Homology vs Protein 
Query= Contig-U10097-1 (Contig-U10097-1Q) /CSM_Contig/Contig-U10097-1Q.Seq.d
         (1170 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,837,715,821
Number of extensions: 35796214
Number of successful extensions: 69456
Number of sequences better than 10.0: 0
Number of HSP's gapped: 69435
Number of HSP's successfully gapped: 0
Length of query: 390
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 260
Effective length of database: 624,409,729
Effective search space: 162346529540
Effective search space used: 162346529540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.88  gvh: 0.36  alm: 0.14  top: 0.73  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: vesicles of secretory system
	 16.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U10097-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 4
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1