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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10091-1
Contig ID Contig-U10091-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10091-1 (Contig-U10091-1Q) /CSM_Contig/Contig-U10091-1Q.Seq.d
ATTTAATTAAAAAAAAAAAAAAAAAAATGATGATTAAAAATTTCATTTTA
ACTGTATTTTTATTAGTTTGCATTAGTGCTTTTGTAAACTCTCAAAGTAC
TGTTGGTTTAAGTGGTGCAGCATCAGTATCATTGGATGGAGATGTAATCC
GTTCATAGTGTTTATACTGATAGTAATATACTTTCACCATCATTTACATT
AACAGGTGTTTCAGTTGGTGGAACTATTTTAAATGGTGGAAAGGGTGGTA
GTGTTTCAGTTGATACATCAATCTTTAAACTTGATACAATCAGAGGTCTC
GTTAAAGTTTTCCCAACTTACTTTTTCAATTACTTTGATTTCAAAGCTGA
CACAAATCAAGGAATAAATGTTAATGCTACTTCACTTTCATCAATTTTCA
TGCCAACTTTTATCGTTGAATATGAGGAGACCAATAATCAAGAAGGTTTC
CAATATGGTCAAGACGATTTATTAGGTTATGTCAATCTTGCTATTTTACC
ATACACCCTCTCCAAAGAAACCACTCAATTGGAAGTTGATGGTAAAGATT
TCACAGTTTATCAAGTCAACTTAACAAGTTCCGGCTCAAAATATGCAAAC
TTATTCCAAATGGTATTCTACGTATCAGGTGCACCAATCGATTTGGCCGA
TAGCAGATTATCAGCTGAGCAATCTAAAGTCGATATTTTAATCAATGGTT
ACTATGGTTCAAACAATGTTAAAGATTGTGCAATCAATGGCAATGTCATC
ACTGCTGGTTGTATCTCAACTGGTCCATCATCAAACCCAAATTCAAGATT
AGCCCTCACTTCATTCTATGCCACCGTCGGTTTAGATTTCTCTCTCAATG
GTGATGGTGAAATCAATGTTGATGGTACCCCATTAAATGCTGGTTTCTCT
TGGGTTTCAAATGCTCAAGTTAAAGTCGATGGTAGTTCAGATGTTAAAAC
TGTAAATATCATTGCTAATACCACCGCCAGTGATGCCGATGGTAAAGTAT
TTGGTTCTGCCTCTGTTAATGGTGCTTTAAGTGGTAAAGTTTTCAGTAAA
TTCTTAGTCCACTCTTTTGATGCCGTTAGACCAAACACTCTCTTATGGGA
TCCAAGTATTGGTGCTTCAGTTGATAATTCAGCAACTTCAACAATTTTCT
CTTTTGGTTTAATCTTATCATTAGTTTTATTTGTATTATTCTTATAAATT
AATTGGAAAAAAAAAAAAAAAAACCAATATATATTCTAAATAAATTAAAT
TTAATAATTATGTATTTATAATTTTTCTAAATCCGAAATA
Gap no gap
Contig length 1290
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3703092
End point 3701802
Strand (PLUS/MINUS) MINUS
Number of clones 13
Number of EST 13
Link to clone list U10091
List of clone(s) 

est1=SLB765E,1,1290
est2=SLD662F,23,273
est3=CFJ415Z,494,1078
est4=VFO404Z,538,1069
est5=SSG825Z,562,1291
est6=VFE455Z,581,1023
est7=SFA825Z,583,1069
est8=SSM409Z,622,1215
est9=SLE192Z,688,1286
est10=SLH496E,730,1213
est11=SLI559Z,786,1271
est12=VFH145Z,836,1073
est13=SLJ306Z,877,1210
Translated Amino Acid sequence 
i*lkkkkkk**lkisf*lyfy*falvll*tlkvllv*vvqhqyhwmem*SVHSVYTDSNI
LSPSFTLTGVSVGGTILNGGKGGSVSVDTSIFKLDTIRGLVKVFPTYFFNYFDFKADTNQ
GINVNATSLSSIFMPTFIVEYEETNNQEGFQYGQDDLLGYVNLAILPYTLSKETTQLEVD
GKDFTVYQVNLTSSGSKYANLFQMVFYVSGAPIDLADSRLSAEQSKVDILINGYYGSNNV
KDCAINGNVITAGCISTGPSSNPNSRLALTSFYATVGLDFSLNGDGEINVDGTPLNAGFS
WVSNAQVKVDGSSDVKTVNIIANTTASDADGKVFGSASVNGALSGKVFSKFLVHSFDAVR
PNTLLWDPSIGASVDNSATSTIFSFGLILSLVLFVLFL*inwkkkkknqyif*in*i**l
ciynfsksei
Translated Amino Acid sequence (All Frames) 
Frame A:
i*lkkkkkk**lkisf*lyfy*falvll*tlkvllv*vvqhqyhwmem*SVHSVYTDSNI
LSPSFTLTGVSVGGTILNGGKGGSVSVDTSIFKLDTIRGLVKVFPTYFFNYFDFKADTNQ
GINVNATSLSSIFMPTFIVEYEETNNQEGFQYGQDDLLGYVNLAILPYTLSKETTQLEVD
GKDFTVYQVNLTSSGSKYANLFQMVFYVSGAPIDLADSRLSAEQSKVDILINGYYGSNNV
KDCAINGNVITAGCISTGPSSNPNSRLALTSFYATVGLDFSLNGDGEINVDGTPLNAGFS
WVSNAQVKVDGSSDVKTVNIIANTTASDADGKVFGSASVNGALSGKVFSKFLVHSFDAVR
PNTLLWDPSIGASVDNSATSTIFSFGLILSLVLFVLFL*inwkkkkknqyif*in*i**l
ciynfsksei


Frame B:
fn*kkkkkndd*kfhfncifislh*cfcklskycwfkwcsisiigwrcnpfivfiliviy
fhhhlh*qvfqlvelf*mvervvvfqlihqslnliqsevslkfsqltfsitliskltqik
e*mlmllhfhqfscqllslnmrrpiikkvsnmvktiy*vmsillfyhtpspkkplnwklm
vkisqfikst*qvpaqnmqtyskwystyqvhqsiwpiadyqlsnlksif*smvtmvqtml
kivqsmamssllvvsqlvhhqtqiqd*pslhsmppsv*islsmvmvksmlmvph*mlvsl
gfqmlklksmvvqmlkl*isllipppvmpmvkylvlpllmvl*vvkfsvns*stllmpld
qtlsygiqvlvlqliiqqlqqfsllv*syh*fylyysykligkkkkktniysk*ikfnny
vfiiflnpk


Frame C:
likkkkkkmmiknfiltvfllvcisafvnsqstvglsgaasvsldgdvirs*cly***yt
ftiiyinrcfswwnyfkwwkgw*cfs*yinl*t*ynqrsr*sfpnllfqll*fqs*hksr
nkc*cyftfinfhanfyr*i*gdq*srrfpiwsrrfirlcqscyftihplqrnhsigs*w
*rfhslssqlnkfrlkicklipngilrirctnrfgr*qiis*ai*sryfnqwllwfkqc*
rlcnqwqchhcwlylnwsiikpkfkisphfilchrrfrflsqw*w*nqc*wypikcwfll
gfkcss*srw*frc*nckyhc*yhrq*crw*siwfclc*wcfkw*sfq*ilsplf*cr*t
khslmgskywcfs**fsnfnnflfwfnliisficiilin*lekkkkkpiyilnklnliim
yl*ff*irn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10091-1 (Contig-U10091-1Q)
/CSM_Contig/Contig-U10091-1Q.Seq.d
         (1290 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10091-1 (Contig-U10091-1Q) /CSM_Contig/Conti...  2337  0.0
Contig-U03115-1 (Contig-U03115-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13917-1 (Contig-U13917-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U12673-1 (Contig-U12673-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U03697-1 (Contig-U03697-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U14035-1 (Contig-U14035-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U13860-1 (Contig-U13860-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U12024-1 (Contig-U12024-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U10854-1 (Contig-U10854-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U10804-1 (Contig-U10804-1Q) /CSM_Contig/Conti...    36  0.091

>Contig-U10091-1 (Contig-U10091-1Q) /CSM_Contig/Contig-U10091-1Q.Seq.d
          Length = 1290

 Score = 2337 bits (1179), Expect = 0.0
 Identities = 1179/1179 (100%)
 Strand = Plus / Plus

                                                                        
Query: 28   tgatgattaaaaatttcattttaactgtatttttattagtttgcattagtgcttttgtaa 87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28   tgatgattaaaaatttcattttaactgtatttttattagtttgcattagtgcttttgtaa 87

                                                                        
Query: 88   actctcaaagtactgttggtttaagtggtgcagcatcagtatcattggatggagatgtaa 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88   actctcaaagtactgttggtttaagtggtgcagcatcagtatcattggatggagatgtaa 147

                                                                        
Query: 148  tccgttcatagtgtttatactgatagtaatatactttcaccatcatttacattaacaggt 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148  tccgttcatagtgtttatactgatagtaatatactttcaccatcatttacattaacaggt 207

                                                                        
Query: 208  gtttcagttggtggaactattttaaatggtggaaagggtggtagtgtttcagttgataca 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208  gtttcagttggtggaactattttaaatggtggaaagggtggtagtgtttcagttgataca 267

                                                                        
Query: 268  tcaatctttaaacttgatacaatcagaggtctcgttaaagttttcccaacttactttttc 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268  tcaatctttaaacttgatacaatcagaggtctcgttaaagttttcccaacttactttttc 327

                                                                        
Query: 328  aattactttgatttcaaagctgacacaaatcaaggaataaatgttaatgctacttcactt 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328  aattactttgatttcaaagctgacacaaatcaaggaataaatgttaatgctacttcactt 387

                                                                        
Query: 388  tcatcaattttcatgccaacttttatcgttgaatatgaggagaccaataatcaagaaggt 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388  tcatcaattttcatgccaacttttatcgttgaatatgaggagaccaataatcaagaaggt 447

                                                                        
Query: 448  ttccaatatggtcaagacgatttattaggttatgtcaatcttgctattttaccatacacc 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448  ttccaatatggtcaagacgatttattaggttatgtcaatcttgctattttaccatacacc 507

                                                                        
Query: 508  ctctccaaagaaaccactcaattggaagttgatggtaaagatttcacagtttatcaagtc 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508  ctctccaaagaaaccactcaattggaagttgatggtaaagatttcacagtttatcaagtc 567

                                                                        
Query: 568  aacttaacaagttccggctcaaaatatgcaaacttattccaaatggtattctacgtatca 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  aacttaacaagttccggctcaaaatatgcaaacttattccaaatggtattctacgtatca 627

                                                                        
Query: 628  ggtgcaccaatcgatttggccgatagcagattatcagctgagcaatctaaagtcgatatt 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  ggtgcaccaatcgatttggccgatagcagattatcagctgagcaatctaaagtcgatatt 687

                                                                        
Query: 688  ttaatcaatggttactatggttcaaacaatgttaaagattgtgcaatcaatggcaatgtc 747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  ttaatcaatggttactatggttcaaacaatgttaaagattgtgcaatcaatggcaatgtc 747

                                                                        
Query: 748  atcactgctggttgtatctcaactggtccatcatcaaacccaaattcaagattagccctc 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  atcactgctggttgtatctcaactggtccatcatcaaacccaaattcaagattagccctc 807

                                                                        
Query: 808  acttcattctatgccaccgtcggtttagatttctctctcaatggtgatggtgaaatcaat 867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  acttcattctatgccaccgtcggtttagatttctctctcaatggtgatggtgaaatcaat 867

                                                                        
Query: 868  gttgatggtaccccattaaatgctggtttctcttgggtttcaaatgctcaagttaaagtc 927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  gttgatggtaccccattaaatgctggtttctcttgggtttcaaatgctcaagttaaagtc 927

                                                                        
Query: 928  gatggtagttcagatgttaaaactgtaaatatcattgctaataccaccgccagtgatgcc 987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  gatggtagttcagatgttaaaactgtaaatatcattgctaataccaccgccagtgatgcc 987

                                                                        
Query: 988  gatggtaaagtatttggttctgcctctgttaatggtgctttaagtggtaaagttttcagt 1047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  gatggtaaagtatttggttctgcctctgttaatggtgctttaagtggtaaagttttcagt 1047

                                                                        
Query: 1048 aaattcttagtccactcttttgatgccgttagaccaaacactctcttatgggatccaagt 1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 aaattcttagtccactcttttgatgccgttagaccaaacactctcttatgggatccaagt 1107

                                                                        
Query: 1108 attggtgcttcagttgataattcagcaacttcaacaattttctcttttggtttaatctta 1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 attggtgcttcagttgataattcagcaacttcaacaattttctcttttggtttaatctta 1167

                                                   
Query: 1168 tcattagttttatttgtattattcttataaattaattgg 1206
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1168 tcattagttttatttgtattattcttataaattaattgg 1206


>Contig-U03115-1 (Contig-U03115-1Q) /CSM_Contig/Contig-U03115-1Q.Seq.d
          Length = 1397

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 657 attatcagctgagcaatctaaagtcgatattttaatcaatggtta 701
           |||||||||||| ||||| ||||| ||| ||| ||||| ||||||
Sbjct: 735 attatcagctgaacaatcaaaagttgatgtttcaatcattggtta 779


 Score = 34.2 bits (17), Expect = 0.36
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 400 atgccaacttttatcgttgaatatg 424
           ||||||||||||||  |||||||||
Sbjct: 485 atgccaacttttattattgaatatg 509


 Score = 30.2 bits (15), Expect = 5.6
 Identities = 24/27 (88%)
 Strand = Plus / Plus

                                      
Query: 310 ttcccaacttactttttcaattacttt 336
           |||||||  ||||||||||||| ||||
Sbjct: 341 ttcccaaactactttttcaatttcttt 367


>Contig-U13917-1 (Contig-U13917-1Q) /CSM_Contig/Contig-U13917-1Q.Seq.d
          Length = 1429

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1180 tttgtattattcttataaa 1198
            |||||||||||||||||||
Sbjct: 479  tttgtattattcttataaa 461


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,128
Number of Sequences: 6905
Number of extensions: 13128
Number of successful extensions: 1375
Number of sequences better than 10.0: 149
length of query: 1290
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1274
effective length of database: 5,564,391
effective search space: 7089034134
effective search space used: 7089034134
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA 
Query= Contig-U10091-1 (Contig-U10091-1Q) /CSM_Contig/Contig-U10091-1Q.Seq.d
         (1290 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84855) Dictyostelium discoideum slug cDNA, clone SSG825.       1279   0.0    1
(AU034119) Dictyostelium discoideum slug cDNA, clone SLB765.     1179   0.0    1
(AU039117) Dictyostelium discoideum slug cDNA, clone SSM409.     1160   0.0    1
(BJ375570) Dictyostelium discoideum cDNA clone:ddc19n04, 3' ...  1160   0.0    1
(BJ435947) Dictyostelium discoideum cDNA clone:ddv29h02, 3' ...  1047   0.0    1
(AU060859) Dictyostelium discoideum slug cDNA, clone SLB765.     1029   0.0    2
(AU034690) Dictyostelium discoideum slug cDNA, clone SLE192.     1023   0.0    1
(AU040036) Dictyostelium discoideum slug cDNA, clone SLH496.      946   0.0    1
(BJ431044) Dictyostelium discoideum cDNA clone:ddv9n14, 3' e...   876   0.0    1
(AU053399) Dictyostelium discoideum slug cDNA, clone SLI559.      835   0.0    1
(BJ398786) Dictyostelium discoideum cDNA clone:dds2b08, 3' e...   815   0.0    1
(AU053644) Dictyostelium discoideum slug cDNA, clone SLJ306.      654   0.0    1
(AU061277) Dictyostelium discoideum slug cDNA, clone SLD662.      482   e-131  1
(BJ431740) Dictyostelium discoideum cDNA clone:ddv15i11, 3' ...   353   e-117  2
(C92925) Dictyostelium discoideum slug cDNA, clone SSF768.         42   0.044  2
(DD164427) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              50   0.21   1
(AX695647) Sequence 1274 from Patent WO03008583.                   50   0.21   1
(AC063962) Homo sapiens chromosome 10 clone RP11-222G7, comp...    50   0.21   1
(ER604723) 1093016268315 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.83   1
(EK134236) 1093011895356 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.83   1
(DK450316) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK446551) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK433556) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK433459) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK432840) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK431566) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK431165) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK429348) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK427423) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK421496) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK421454) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(DK420635) Drosophila simulans mRNA, adult full-length cDNA ...    48   0.83   1
(AC162420) Bos taurus clone CH240-26B18, WORKING DRAFT SEQUE...    36   2.0    9
(CT327419) Sus scrofa genomic clone CH242-332C24, genomic su...    36   2.6    2
(BV394543) S243P646FB8.T0 CaliforniaCoyote Canis latrans STS...    46   3.3    1
(EA169636) Sequence 33951 from patent US 7214786.                  46   3.3    1
(AC004829) Homo sapiens PAC clone RP4-530J23 from 7, complet...    46   3.3    1
(CU694659) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.3    1
(AC205529) Zea mays chromosome 4 clone CH201-112E18; ZMMBBc0...    46   3.3    1
(AC190995) Zea mays chromosome 4 clone CH201-465O21; ZMMBBc0...    46   3.3    1
(EJ190840) 1092344195839 Global-Ocean-Sampling_GS-27-01-01-1...    46   3.3    1
(CE076430) tigr-gss-dog-17000324347282 Dog Library Canis lup...    46   3.3    1
(CC710042) OGWDI01TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    46   3.3    1
(EH680324) CCIL5207.b1_M06.ab1 CCI(LMS) chicory Cichorium in...    46   3.3    1
(EB313390) CNSN01-F-077586-501 Normalized CNS library (juven...    46   3.3    1
(BU692796) JM01045G08 JM01 Ipomoea batatas cDNA, mRNA sequence.    46   3.3    1
(BU692624) JM01043D02 JM01 Ipomoea batatas cDNA, mRNA sequence.    46   3.3    1
(BU692554) JM01042D04 JM01 Ipomoea batatas cDNA, mRNA sequence.    46   3.3    1
(BU692187) JM01037A01 JM01 Ipomoea batatas cDNA, mRNA sequence.    46   3.3    1
(ER498290) 1093015360383 Global-Ocean-Sampling_GS-35-01-01-1...    42   3.6    2
(AU060900) Dictyostelium discoideum slug cDNA, clone SLC138.       34   4.2    3
(EL499414) PFLAB1-S_F3_-P5A_H10_16.AB1 Blood stage Plasmodiu...    36   5.1    2
(AC007541) Homo sapiens 12q24.1 BAC RPCI11-412D9 (Roswell Pa...    32   6.2    2
(BZ683539) PUBGF93TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    32   8.4    3
(CJ191275) Mus musculus 2 cells egg cDNA, RIKEN full-length ...    32   8.7    2
(AV103365) Mus musculus 13-day embryo liver cDNA, partial se...    32   8.7    2
(BU495916) PfESToab79d03.y1 Plasmodium falciparum 3D7 asexua...    36   9.5    2

>(C84855) Dictyostelium discoideum slug cDNA, clone SSG825.
          Length = 730

 Score = 1279 bits (645), Expect = 0.0
 Identities = 645/645 (100%)
 Strand = Plus / Plus


Query: 562  caagtcaacttaacaagttccggctcaaaatatgcaaacttattccaaatggtattctac 621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    caagtcaacttaacaagttccggctcaaaatatgcaaacttattccaaatggtattctac 60


Query: 622  gtatcaggtgcaccaatcgatttggccgatagcagattatcagctgagcaatctaaagtc 681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gtatcaggtgcaccaatcgatttggccgatagcagattatcagctgagcaatctaaagtc 120


Query: 682  gatattttaatcaatggttactatggttcaaacaatgttaaagattgtgcaatcaatggc 741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  gatattttaatcaatggttactatggttcaaacaatgttaaagattgtgcaatcaatggc 180


Query: 742  aatgtcatcactgctggttgtatctcaactggtccatcatcaaacccaaattcaagatta 801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aatgtcatcactgctggttgtatctcaactggtccatcatcaaacccaaattcaagatta 240


Query: 802  gccctcacttcattctatgccaccgtcggtttagatttctctctcaatggtgatggtgaa 861
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gccctcacttcattctatgccaccgtcggtttagatttctctctcaatggtgatggtgaa 300


Query: 862  atcaatgttgatggtaccccattaaatgctggtttctcttgggtttcaaatgctcaagtt 921
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  atcaatgttgatggtaccccattaaatgctggtttctcttgggtttcaaatgctcaagtt 360


Query: 922  aaagtcgatggtagttcagatgttaaaactgtaaatatcattgctaataccaccgccagt 981
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  aaagtcgatggtagttcagatgttaaaactgtaaatatcattgctaataccaccgccagt 420


Query: 982  gatgccgatggtaaagtatttggttctgcctctgttaatggtgctttaagtggtaaagtt 1041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  gatgccgatggtaaagtatttggttctgcctctgttaatggtgctttaagtggtaaagtt 480


Query: 1042 ttcagtaaattcttagtccactcttttgatgccgttagaccaaacactctcttatgggat 1101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ttcagtaaattcttagtccactcttttgatgccgttagaccaaacactctcttatgggat 540


Query: 1102 ccaagtattggtgcttcagttgataattcagcaacttcaacaattttctcttttggttta 1161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ccaagtattggtgcttcagttgataattcagcaacttcaacaattttctcttttggttta 600


Query: 1162 atcttatcattagttttatttgtattattcttataaattaattgg 1206
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  atcttatcattagttttatttgtattattcttataaattaattgg 645

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,345,070,395
Number of extensions: 76382245
Number of successful extensions: 6100358
Number of sequences better than 10.0: 57
Length of query: 1290
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1266
Effective length of database: 97,308,875,965
Effective search space: 123193036971690
Effective search space used: 123193036971690
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.27
Homology vs Protein 
Query= Contig-U10091-1 (Contig-U10091-1Q) /CSM_Contig/Contig-U10091-1Q.Seq.d
         (1290 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000698_2219(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    40   0.18
CP000362_1475(CP000362|pid:none) Roseobacter denitrificans OCh 1...    39   0.31
AP009385_518(AP009385|pid:none) Burkholderia multivorans ATCC 17...    39   0.31
CP000828_4419(CP000828|pid:none) Acaryochloris marina MBIC11017,...    39   0.40
EU916176_46(EU916176|pid:none) Feldmannia species virus isolate ...    39   0.53
CU928178_106(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    38   0.69
T21734(T21734)hypothetical protein F35B12.2 - Caenorhabditis ele...    37   1.2
AL844507_164(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.5
CP000383_3510(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    37   2.0
BA000040_4714(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    37   2.0
CP000896_122(CP000896|pid:none) Acholeplasma laidlawii PG-8A, co...    37   2.0
CP000638_210(CP000638|pid:none) Agrobacterium vitis S4 plasmid p...    36   2.6
AM181176_727(AM181176|pid:none) Pseudomonas fluorescens SBW25 co...    36   2.6
CP000282_3313(CP000282|pid:none) Saccharophagus degradans 2-40, ...    36   3.4
CR382125_1082(CR382125|pid:none) Kluyveromyces lactis strain NRR...    35   4.5
CP000077_2133(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6...    35   4.5
CP000931_1431(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...    35   4.5
CP001359_3229(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...    35   5.8
AF123725_1(AF123725|pid:none) Rickettsia helvetica OmpB (ompB) g...    35   5.8
BX294155_188(BX294155|pid:none) Rhodopirellula baltica SH 1 comp...    35   5.8
CP000498_529(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    35   5.8
DQ110870_1(DQ110870|pid:none) Rickettsia asiatica strain IO-1 Om...    35   5.8
CP001402_142(CP001402|pid:none) Sulfolobus islandicus M.16.4, co...    35   7.6
CP000489_2648(CP000489|pid:none) Paracoccus denitrificans PD1222...    35   7.6
AM743169_1316(AM743169|pid:none) Stenotrophomonas maltophilia K2...    34   10.0
AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ...    34   10.0
CU928164_2487(CU928164|pid:none) Escherichia coli IAI39 chromoso...    34   10.0
CP000157_3009(CP000157|pid:none) Erythrobacter litoralis HTCC259...    34   10.0
(O30611) RecName: Full=Ice nucleation protein;  &AF013159_1(AF01...    34   10.0
(A5I2X9) RecName: Full=Segregation and condensation protein B;  ...    34   10.0
(Q54FQ3) RecName: Full=Probable polyketide synthase 29;         ...    34   10.0
CP001028_249(CP001028|pid:none) Burkholderia ambifaria MC40-6 pl...    34   10.0
CP001083_1940(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    34   10.0
AE014075_2820(AE014075|pid:none) Escherichia coli CFT073, comple...    34   10.0
CP000970_2436(CP000970|pid:none) Escherichia coli SMS-3-5, compl...    34   10.0

>CP000698_2219(CP000698|pid:none) Geobacter uraniireducens Rf4,
            complete genome.
          Length = 1011

 Score = 40.0 bits (92), Expect = 0.18
 Identities = 30/119 (25%), Positives = 52/119 (43%)
 Frame = +1

Query: 718  VKDCAINGNVITAGCISTGPSSNPNSRLALTSFYATVGLDFSLNGDGEINVDGTPLNAGF 897
            V D  +N    T    ++ P++ P ++   +      G   SLNG G  + +G PL   F
Sbjct: 776  VNDGKVNSTSSTVVINASTPNAAPVAKATASGSSVRTGTVVSLNGSGSSDANGDPLT--F 833

Query: 898  SWVSNAQVKVDGSSDVKTVNIIANTTASDADGKVFGSASVNGALSGKVFSKFLVHSFDA 1074
            SW   + +    ++ +   N++  +  +D DG    +  VN    GKV S   + S +A
Sbjct: 834  SWAFTS-IPAGSNATLSNSNVVNPSFTADVDGTYVLNLKVN---DGKVDSTAAIISINA 888

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,761,134,077
Number of extensions: 34627566
Number of successful extensions: 95602
Number of sequences better than 10.0: 35
Number of HSP's gapped: 95517
Number of HSP's successfully gapped: 35
Length of query: 430
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 299
Effective length of database: 621,205,444
Effective search space: 185740427756
Effective search space used: 185740427756
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.15  top: 0.67  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for Contig-U10091-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 3
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 6
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0