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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U10064-1
Contig ID Contig-U10064-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U10064-1 (Contig-U10064-1Q) /CSM_Contig/Contig-U10064-1Q.Seq.d
ATTTTAAACAGCTCTTTAGCTAATATTACAACAACGCAAATATATAAAAA
TAAAGATGGAAAGTGGTCCAGTCGTCATTGATGTTTCTAGGATTTCTTGC
TGATCCAACCAGTGCTGAAGCATTGGAAGATTGCAAAAAATTAGTTAAAA
CTTTACAAGAAACATCTTGTTTAGTTATTAAACATCCAAAAGTCAATGAG
GAAGATAATTCAAGATTTTTAGATATGATGGAAAAATATTATGAACAACC
AACTGAGGAATTAATGAAAGATGTTCATCCAGAATGGAGTTATCAATTAG
GAGCCACACCAGAATTTACAGAGGAACCAAGAGATCATAGTGAAGTTATC
ACTAAATTATTACCACAATATGCAGCACATGCACCAAAAGGAGCCGATCC
AAAATGGAGATTCTTTTGGAGAATTGGTGATCGTCCAGAGGATACTAAAT
TTCCAGAATTAAATTGTGCCCCAGTCATTCCAAAAGCATTCCCGGAATGG
CAAAATGTTATGGACTCATGGGGTTCATTAATGTTGTCATCAATTGAGAC
CGTCTCTGAGATGATTGCCACTGGTTATAATTTACCAAAGGATTCAATCA
CCAACTTGATGAAGAACGGCCCACATTTATTAGCACCAACCGGTTCTGAT
TTAAAGAGATTTGGTAATTTGGATCAAATTTTCGCAGGTTTCCACTACGA
TTTCAATTTATTGACTATTCACGGTAAGAGTCGTTATCCAGGTTTATACA
TTTGGCTTCGTGATGGTACTCGTGTTCCAGTTAAAGTTCCAAATGGTTGT
TTACTCTTACAAGCTGGTAAACAATTAGAATGGATCACTGGTGGTGATAT
TTTAGCAGGTTTCCATGAAGTCGTAGTCACTGAAGATACCTTAAAAGTTA
TGGAAAAATCAAAAGATGAAGGTAAATCATTATGGCGTATCTCTTCAACT
CTCTTTGGTCATGTTGCTTCTGATAAAAATCTTACCCTCTTAGAACCATT
CAATAATCCTCAAAATCTTGAAAAATATCCAAACATTTTAGCTGGTAAAC
AATCTGAAGCTGAATTAGAAATGATTAAATTATCAAAAAAATAAATTATA
AAAAAAAAAAAAGTAATGGATATAATAAAGAAAAAGAAAAGAAGAAATTA
AAAATTTATAAGAAAAAAAAGAAAAAAAAAAATTTTTAAATAAATAAAAA
TTAACAGTGTGCTACTATTAT
Gap no gap
Contig length 1221
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 268786
End point 267565
Strand (PLUS/MINUS) MINUS
Number of clones 14
Number of EST 17
Link to clone list U10064
List of clone(s) 

est1=VFB639E,-17,1091
est2=SFK173F,1,654
est3=VFF350F,10,449
est4=CFD619F,18,710
est5=VFB619F,18,618
est6=VFC644F,18,619
est7=VFD150F,18,550
est8=VFD756E,18,1070
est9=VFL846F,18,636
est10=VFO776F,18,574
est11=VSH732F,30,518
est12=VFI249E,33,1096
est13=VFH750F,40,471
est14=VSH732Z,563,1054
est15=VSB260Z,568,1163
est16=VFC644Z,1073,1219
est17=VFH750Z,1081,1222
Translated Amino Acid sequence 
fkqlfs*yynnani*k*RWKVVQSSLMFLGFLADPTSAEALEDCKKLVKTLQETSCLVIK
HPKVNEEDNSRFLDMMEKYYEQPTEELMKDVHPEWSYQLGATPEFTEEPRDHSEVITKLL
PQYAAHAPKGADPKWRFFWRIGDRPEDTKFPELNCAPVIPKAFPEWQNVMDSWGSLMLSS
IETVSEMIATGYNLPKDSITNLMKNGPHLLAPTGSDLKRFGNLDQIFAGFHYDFNLLTIH
GKSRYPGLYIWLRDGTRVPVKVPNGCLLLQAGKQLEWITGGDILAGFHEVVVTEDTLKVM
EKSKDEGKSLWRISSTLFGHVASDKNLTLLEPFNNPQNLEKYPNILAGKQSEAELEMIKL
SKK*iikkkkvmdiikkkkrrn*kfirkkrkkkifk*ikinsvlll
Translated Amino Acid sequence (All Frames) 
Frame A:
ilnsslanitttqiyknkdgkwssrh*cf*dflliqpvlkhwkiakn*lklykkhlv*ll
niqksmrkiiqdf*i*wknimnnqlrn**kmfiqngvin*ephqnlqrnqeiivklslny
yhnmqhmhqkepiqngdsfgelvivqrilnfqn*ivpqsfqkhsrngkmlwthgvh*cch
qlrpslr*lplviiyqriqspt**rtahiy*hqpvli*rdlviwikfsqvsttisiy*lf
tvrvviqvytfgfvmvlvfqlkfqmvvysyklvnn*ngslvvif*qvsmks*slkip*kl
wknqkmkvnhygvslqlslvmlllikilps*nhsiilkilkniqtf*lvnnlkln*k*ln
yqknkl*kkkk*wi**rkrkeeiknl*ekkekkkflnk*kltvcyyy


Frame B:
f*tal*lilqqrkyikikmesgpvvidvsrisc*snqc*sigrlqkis*nftrnilfsy*
tsksq*gr*fkifrydgkil*ttn*ginercssrmelsirshtriyrgtkrs**syh*ii
tticstctkrsrskmeillenw*ssrgy*isriklcpshsksipgmakcyglmgfinvvi
n*drl*ddchwl*ftkgfnhqldeerptfistnrf*fkeiw*fgsnfrrfplrfqfidys
r*eslsrfihlas*wyscss*sskwlftltsw*tirmdhww*yfsrfp*srsh*rylksy
gkikr*r*iimaylfnslwsccf**ksyplrtiq*ssks*kiskhfsw*ti*s*irnd*i
ikkinykkkksngynkekekkklkiykkkkkkknf*inkn*qcati


Frame C:
fkqlfs*yynnani*k*RWKVVQSSLMFLGFLADPTSAEALEDCKKLVKTLQETSCLVIK
HPKVNEEDNSRFLDMMEKYYEQPTEELMKDVHPEWSYQLGATPEFTEEPRDHSEVITKLL
PQYAAHAPKGADPKWRFFWRIGDRPEDTKFPELNCAPVIPKAFPEWQNVMDSWGSLMLSS
IETVSEMIATGYNLPKDSITNLMKNGPHLLAPTGSDLKRFGNLDQIFAGFHYDFNLLTIH
GKSRYPGLYIWLRDGTRVPVKVPNGCLLLQAGKQLEWITGGDILAGFHEVVVTEDTLKVM
EKSKDEGKSLWRISSTLFGHVASDKNLTLLEPFNNPQNLEKYPNILAGKQSEAELEMIKL
SKK*iikkkkvmdiikkkkrrn*kfirkkrkkkifk*ikinsvlll
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U10064-1 (Contig-U10064-1Q)
/CSM_Contig/Contig-U10064-1Q.Seq.d
         (1221 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U10064-1 (Contig-U10064-1Q) /CSM_Contig/Conti...  2149  0.0
Contig-U11179-1 (Contig-U11179-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14794-1 (Contig-U14794-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U14360-1 (Contig-U14360-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U13434-1 (Contig-U13434-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U12702-1 (Contig-U12702-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U11859-1 (Contig-U11859-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U11283-1 (Contig-U11283-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U11186-1 (Contig-U11186-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U11152-1 (Contig-U11152-1Q) /CSM_Contig/Conti...    36  0.086

>Contig-U10064-1 (Contig-U10064-1Q) /CSM_Contig/Contig-U10064-1Q.Seq.d
          Length = 1221

 Score = 2149 bits (1084), Expect = 0.0
 Identities = 1084/1084 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    attttaaacagctctttagctaatattacaacaacgcaaatatataaaaataaagatgga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    attttaaacagctctttagctaatattacaacaacgcaaatatataaaaataaagatgga 60

                                                                        
Query: 61   aagtggtccagtcgtcattgatgtttctaggatttcttgctgatccaaccagtgctgaag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   aagtggtccagtcgtcattgatgtttctaggatttcttgctgatccaaccagtgctgaag 120

                                                                        
Query: 121  cattggaagattgcaaaaaattagttaaaactttacaagaaacatcttgtttagttatta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  cattggaagattgcaaaaaattagttaaaactttacaagaaacatcttgtttagttatta 180

                                                                        
Query: 181  aacatccaaaagtcaatgaggaagataattcaagatttttagatatgatggaaaaatatt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aacatccaaaagtcaatgaggaagataattcaagatttttagatatgatggaaaaatatt 240

                                                                        
Query: 241  atgaacaaccaactgaggaattaatgaaagatgttcatccagaatggagttatcaattag 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  atgaacaaccaactgaggaattaatgaaagatgttcatccagaatggagttatcaattag 300

                                                                        
Query: 301  gagccacaccagaatttacagaggaaccaagagatcatagtgaagttatcactaaattat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gagccacaccagaatttacagaggaaccaagagatcatagtgaagttatcactaaattat 360

                                                                        
Query: 361  taccacaatatgcagcacatgcaccaaaaggagccgatccaaaatggagattcttttgga 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  taccacaatatgcagcacatgcaccaaaaggagccgatccaaaatggagattcttttgga 420

                                                                        
Query: 421  gaattggtgatcgtccagaggatactaaatttccagaattaaattgtgccccagtcattc 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  gaattggtgatcgtccagaggatactaaatttccagaattaaattgtgccccagtcattc 480

                                                                        
Query: 481  caaaagcattcccggaatggcaaaatgttatggactcatggggttcattaatgttgtcat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  caaaagcattcccggaatggcaaaatgttatggactcatggggttcattaatgttgtcat 540

                                                                        
Query: 541  caattgagaccgtctctgagatgattgccactggttataatttaccaaaggattcaatca 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  caattgagaccgtctctgagatgattgccactggttataatttaccaaaggattcaatca 600

                                                                        
Query: 601  ccaacttgatgaagaacggcccacatttattagcaccaaccggttctgatttaaagagat 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  ccaacttgatgaagaacggcccacatttattagcaccaaccggttctgatttaaagagat 660

                                                                        
Query: 661  ttggtaatttggatcaaattttcgcaggtttccactacgatttcaatttattgactattc 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  ttggtaatttggatcaaattttcgcaggtttccactacgatttcaatttattgactattc 720

                                                                        
Query: 721  acggtaagagtcgttatccaggtttatacatttggcttcgtgatggtactcgtgttccag 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  acggtaagagtcgttatccaggtttatacatttggcttcgtgatggtactcgtgttccag 780

                                                                        
Query: 781  ttaaagttccaaatggttgtttactcttacaagctggtaaacaattagaatggatcactg 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ttaaagttccaaatggttgtttactcttacaagctggtaaacaattagaatggatcactg 840

                                                                        
Query: 841  gtggtgatattttagcaggtttccatgaagtcgtagtcactgaagataccttaaaagtta 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  gtggtgatattttagcaggtttccatgaagtcgtagtcactgaagataccttaaaagtta 900

                                                                        
Query: 901  tggaaaaatcaaaagatgaaggtaaatcattatggcgtatctcttcaactctctttggtc 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tggaaaaatcaaaagatgaaggtaaatcattatggcgtatctcttcaactctctttggtc 960

                                                                        
Query: 961  atgttgcttctgataaaaatcttaccctcttagaaccattcaataatcctcaaaatcttg 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  atgttgcttctgataaaaatcttaccctcttagaaccattcaataatcctcaaaatcttg 1020

                                                                        
Query: 1021 aaaaatatccaaacattttagctggtaaacaatctgaagctgaattagaaatgattaaat 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aaaaatatccaaacattttagctggtaaacaatctgaagctgaattagaaatgattaaat 1080

                
Query: 1081 tatc 1084
            ||||
Sbjct: 1081 tatc 1084


 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                   
Query: 1183 tttttaaataaataaaaattaacagtgtgctactattat 1221
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 tttttaaataaataaaaattaacagtgtgctactattat 1221


>Contig-U11179-1 (Contig-U11179-1Q) /CSM_Contig/Contig-U11179-1Q.Seq.d
          Length = 2758

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 1043 tggtaaacaatctgaagctgaattagaa 1070
            ||||||||||||| |||| |||||||||
Sbjct: 1378 tggtaaacaatctcaagcagaattagaa 1405


 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 814 ctggtaaacaattaga 829
           ||||||||||||||||
Sbjct: 8   ctggtaaacaattaga 23


>Contig-U14794-1 (Contig-U14794-1Q) /CSM_Contig/Contig-U14794-1Q.Seq.d
          Length = 203

 Score = 36.2 bits (18), Expect = 0.086
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1187 taaataaataaaaattaa 1204
            ||||||||||||||||||
Sbjct: 111  taaataaataaaaattaa 128


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,551
Number of Sequences: 6905
Number of extensions: 18551
Number of successful extensions: 2680
Number of sequences better than 10.0: 324
length of query: 1221
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1205
effective length of database: 5,564,391
effective search space: 6705091155
effective search space used: 6705091155
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA 
Query= Contig-U10064-1 (Contig-U10064-1Q) /CSM_Contig/Contig-U10064-1Q.Seq.d
         (1221 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ429654) Dictyostelium discoideum cDNA clone:ddv4m10, 3' e...  1425   0.0    2
(BJ360808) Dictyostelium discoideum cDNA clone:ddc8e06, 5' e...  1221   0.0    2
(BJ430777) Dictyostelium discoideum cDNA clone:ddv8p13, 3' e...  1197   0.0    2
(BJ390251) Dictyostelium discoideum cDNA clone:dds21a19, 5' ...  1110   0.0    2
(BJ432056) Dictyostelium discoideum cDNA clone:ddv17a14, 3' ...  1108   0.0    2
(BJ415979) Dictyostelium discoideum cDNA clone:ddv24l12, 5' ...  1074   0.0    2
(BJ411353) Dictyostelium discoideum cDNA clone:ddv4e06, 5' e...  1039   0.0    2
(BJ411925) Dictyostelium discoideum cDNA clone:ddv6g12, 5' e...  1033   0.0    2
(BJ417506) Dictyostelium discoideum cDNA clone:ddv30h19, 5' ...   952   0.0    2
(BJ412489) Dictyostelium discoideum cDNA clone:ddv8p13, 5' e...   942   0.0    2
(BJ413942) Dictyostelium discoideum cDNA clone:ddv17a14, 5' ...   940   0.0    2
(BJ412242) Dictyostelium discoideum cDNA clone:ddv7c13, 5' e...   904   0.0    2
(AU261922) Dictyostelium discoideum vegetative cDNA clone:VS...  1019   0.0    1
(AU267886) Dictyostelium discoideum vegetative cDNA clone:VS...   841   0.0    2
(AU267887) Dictyostelium discoideum vegetative cDNA clone:VS...   908   0.0    2
(BJ411436) Dictyostelium discoideum cDNA clone:ddv4m10, 5' e...   722   0.0    2
(BJ410177) Dictyostelium discoideum cDNA clone:ddv11d13, 5' ...   704   0.0    2
(BJ413653) Dictyostelium discoideum cDNA clone:ddv16d13, 5' ...   825   0.0    2
(FE259793) CAPH7910.fwd CAPH Naegleria gruberi amoeba stage ...    54   1e-14  3
(FE243599) CAPG7729.fwd CAPG Naegleria gruberi amoeba stage ...    46   3e-12  3
(FE257517) CAPH6669.fwd CAPH Naegleria gruberi amoeba stage ...    46   3e-07  2
(FE260186) CAZN1112.fwd CAZN Naegleria gruberi Flagellate St...    46   3e-07  2
(CT743105) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   5e-06  3
(FE254414) CAPH5044.fwd CAPH Naegleria gruberi amoeba stage ...    54   5e-06  2
(CT750663) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   6e-06  3
(CT748686) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   6e-06  3
(CT783502) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   6e-06  3
(CT748236) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   6e-06  3
(CT749628) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   6e-06  3
(CT768384) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   6e-06  3
(CT796303) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   6e-06  3
(CT748520) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   7e-06  3
(CT749489) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   7e-06  3
(CT768791) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   7e-06  3
(CT752565) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   6e-05  3
(CN597983) TTE00010307 Normalized large Tetrahymena thermoph...    46   7e-05  3
(CT754945) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   0.004  3
(CT784382) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   0.004  3
(CT758195) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   0.004  3
(CT758510) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   0.005  3
(CT758770) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   0.005  3
(CT810881) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.011  2
(FE260185) CAZN1112.rev CAZN Naegleria gruberi Flagellate St...    54   0.013  1
(FE259792) CAPH7910.rev CAPH Naegleria gruberi amoeba stage ...    54   0.013  1
(FE257516) CAPH6669.rev CAPH Naegleria gruberi amoeba stage ...    54   0.013  1
(FE256994) CAPH6396.rev CAPH Naegleria gruberi amoeba stage ...    54   0.013  1
(FE254413) CAPH5044.rev CAPH Naegleria gruberi amoeba stage ...    54   0.013  1
(FE243598) CAPG7729.rev CAPG Naegleria gruberi amoeba stage ...    54   0.013  1
(CT812906) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.015  2
(CT747164) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.017  2
(CU046608) Equus caballus GSS, BAC clone CH241-145G12, SP6 e...    42   0.032  3
(EY340597) CAWZ10360.rev CAWZ Helobdella robusta Primary Lat...    40   0.052  2
(EY368804) CAXA12015.rev CAXA Helobdella robusta Subtracted ...    40   0.056  2
(CT744017) Paramecium tetraurelia 5-PRIME EST from clone LK0...    34   0.14   3
(AC150566) Medicago truncatula clone mth2-21o10, complete se...    50   0.20   1
(AC127021) Medicago truncatula clone mth2-5e5, complete sequ...    50   0.20   1
(AI356322) qz20h01.x1 NCI_CGAP_CLL1 Homo sapiens cDNA clone ...    50   0.20   1
(AP007999) Lotus japonicus genomic DNA, chromosome 6, clone:...    40   0.25   5
(CT770218) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.79   1
(CT765157) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.79   1
(CT741321) Paramecium tetraurelia 3-PRIME EST from clone LK0...    48   0.79   1
(FG220186) Aaov03359 Antheraea assama fifth instar larval ov...    48   0.79   1
(BJ374367) Dictyostelium discoideum cDNA clone:ddc7o07, 3' e...    38   3.0    2
(AL161516) Arabidopsis thaliana DNA chromosome 4, contig fra...    46   3.1    1
(AL049487) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    46   3.1    1
(AL049481) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    46   3.1    1
(EJ089822) 1095460156642 Global-Ocean-Sampling_GS-26-01-01-1...    46   3.1    1
(DK270120) Drosophila auraria mRNA, adult full-length cDNA c...    46   3.1    1
(DK270027) Drosophila auraria mRNA, adult full-length cDNA c...    46   3.1    1
(DB531062) Homo sapiens hippocampus cDNA, RIKEN full-length ...    46   3.1    1
(DB373882) Homo sapiens cDNA clone PLACE1002483, 3' end, mRN...    46   3.1    1
(BW608786) Lotus japonicus cDNA, clone: LjFL1-033-DB07, 5' e...    46   3.1    1
(BI516349) BB160022A10B08.5 Bee Brain Normalized Library, BB...    46   3.1    1
(AA664083) ac04a11.s1 Stratagene lung (#937210) Homo sapiens...    46   3.1    1
(AR531619) Sequence 166 from patent US 6727066.                    42   4.7    2
(AU034536) Dictyostelium discoideum slug cDNA, clone SLC407.       36   5.5    2
(C94050) Dictyostelium discoideum slug cDNA, clone SSG331.         36   6.5    2
(BJ398773) Dictyostelium discoideum cDNA clone:dds2l01, 3' e...    36   6.5    2
(CX530939) s13dNF35D11MJ091_248019 Methyl Jasmonate-Elicited...    40   7.0    2
(DW097986) CLPY9017.b1_B23.ab1 CLP(XYZ) lettuce perennis Lac...    32   7.7    3
(DY658305) SY_MF_03_F01 SY_MF Senecio chrysanthemifolius cDN...    34   7.9    2
(AI077862) oy11c07.s1 Soares_senescent_fibroblasts_NbHSF Hom...    42   8.4    2
(AU033492) Dictyostelium discoideum slug cDNA, clone SLA893.       36   8.4    2
(AU033363) Dictyostelium discoideum slug cDNA, clone SLA668.       36   8.5    2
(AU034190) Dictyostelium discoideum slug cDNA, clone SLC239.       36   8.8    2
(CX155601) TfEST021E10 Tf30924 cDNA Library Tritrichomonas f...    36   8.9    2
(C92985) Dictyostelium discoideum slug cDNA, clone SSF415.         36   8.9    2
(AU060607) Dictyostelium discoideum slug cDNA, clone SLK626.       36   9.3    2
(AA660854) 00749 MtRHE Medicago truncatula cDNA 5', mRNA seq...    40   9.3    2
(CX154989) TfEST033F03 Tf30924 cDNA Library Tritrichomonas f...    36   9.4    2
(C90106) Dictyostelium discoideum slug cDNA, clone SSG546.         36   9.5    2
(C94427) Dictyostelium discoideum slug cDNA, clone SSK786.         36   9.5    2
(C92596) Dictyostelium discoideum slug cDNA, clone SSF172.         36   9.6    2
(EV260505) MTYE846TF JCVI-MT1 Medicago truncatula cDNA 5', m...    40   9.7    2

>(BJ429654) Dictyostelium discoideum cDNA clone:ddv4m10, 3' end,
            single read.
          Length = 787

 Score = 1425 bits (719), Expect(2) = 0.0
 Identities = 722/723 (99%)
 Strand = Plus / Minus


Query: 302  agccacaccagaatttacagaggaaccaagagatcatagtgaagttatcactaaattatt 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  agccacaccagaatttacagaggaaccaagagatcatagtgaagttatcactaaattatt 725


Query: 362  accacaatatgcagcacatgcaccaaaaggagccgatccaaaatggagattcttttggag 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  accacaatatgcagcacatgcaccaaaaggagccgatccaaaatggagattcttttggag 665


Query: 422  aattggtgatcgtccagaggatactaaatttccagaattaaattgtgccccagtcattcc 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  aattggtgatcgtccagaggatactaaatttccagaattaaattgtgccccagtcattcc 605


Query: 482  aaaagcattcccggaatggcaaaatgttatggactcatggggttcattaatgttgtcatc 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  aaaagcattcccggaatggcaaaatgttatggactcatggggttcattaatgttgtcatc 545


Query: 542  aattgagaccgtctctgagatgattgccactggttataatttaccaaaggattcaatcac 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  aattgagaccgtctctgagatgattgccactggttataatttaccaaaggattcaatcac 485


Query: 602  caacttgatgaagaacggcccacatttattagcaccaaccggttctgatttaaagagatt 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484  caacttgatgaagaacggcccacatttattagcaccaaccggttctgatttaaagagatt 425


Query: 662  tggtaatttggatcaaattttcgcaggtttccactacgatttcaatttattgactattca 721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424  tggtaatttggatcaaattttcgcaggtttccactacgatttcaatttattgactattca 365


Query: 722  cggtaagagtcgttatccaggtttatacatttggcttcgtgatggtactcgtgttccagt 781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364  cggtaagagtcgttatccaggtttatacatttggcttcgtgatggtactcgtgttccagt 305


Query: 782  taaagttccaaatggttgtttactcttacaagctggtaaacaattagaatggatcactgg 841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304  taaagttccaaatggttgtttactcttacaagctggtaaacaattagaatggatcactgg 245


Query: 842  tggtgatattttagcaggtttccatgaagtcgtagtcactgaagataccttaaaagttat 901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244  tggtgatattttagcaggtttccatgaagtcgtagtcactgaagataccttaaaagttat 185


Query: 902  ggaaaaatcaaaagatgaaggtaaatcattatggcgtatctcttcaactctctttggtca 961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184  ggaaaaatcaaaagatgaaggtaaatcattatggcgtatctcttcaactctctttggtca 125


Query: 962  tgttgcttctgataaaaatcttaccctcttagaaccattcaataatcctcaaaatcttga 1021
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 124  tgttgcttctgataaaaatcttaccctcttagaaccattcaataatcctcaaaatcttaa 65


Query: 1022 aaa 1024
            |||
Sbjct: 64   aaa 62

 Score = 67.9 bits (34), Expect(2) = 0.0
 Identities = 34/34 (100%)
 Strand = Plus / Minus


Query: 1021 aaaaatatccaaacattttagctggtaaacaatc 1054
            ||||||||||||||||||||||||||||||||||
Sbjct: 66   aaaaatatccaaacattttagctggtaaacaatc 33

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,293,083,871
Number of extensions: 74980087
Number of successful extensions: 5945943
Number of sequences better than 10.0: 106
Length of query: 1221
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1197
Effective length of database: 97,308,875,965
Effective search space: 116478724530105
Effective search space used: 116478724530105
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.27
Homology vs Protein 
Query= Contig-U10064-1 (Contig-U10064-1Q) /CSM_Contig/Contig-U10064-1Q.Seq.d
         (1221 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB017064_7(AB017064|pid:none) Arabidopsis thaliana genomic DNA, ...   364   4e-99
BT064205_1(BT064205|pid:none) Zea mays full-length cDNA clone ZM...   348   2e-94
AK067050_1(AK067050|pid:none) Oryza sativa Japonica Group cDNA c...   346   8e-94
AM424957_3(AM424957|pid:none) Vitis vinifera contig VV78X140396....   335   2e-90
EF408659_1(EF408659|pid:none) Silene latifolia unknown protein (...   333   1e-89
EU561055_1(EU561055|pid:none) Silene noctiflora isolate Snoc7 X7...   271   3e-71
EU561058_1(EU561058|pid:none) Silene latifolia isolate SlX7 X7 m...   271   3e-71
EU561057_1(EU561057|pid:none) Silene diclinis isolate SdicX7 X7 ...   271   3e-71
EU561060_1(EU561060|pid:none) Silene latifolia isolate SlY7 X7 m...   271   4e-71
EF145976_1(EF145976|pid:none) Populus trichocarpa clone WS0114_K...   268   4e-70
EU561063_1(EU561063|pid:none) Silene conica isolate Scon7 X7 mRN...   268   4e-70
DQ056143_2(DQ056143|pid:none) Coprinellus disseminatus strain C3...   251   4e-65
AY685680_1(AY685680|pid:none) Gossypium arboreum unknown mRNA.        143   1e-32
AY685681_1(AY685681|pid:none) Gossypium bickii unknown mRNA.          142   3e-32
BT060678_1(BT060678|pid:none) Zea mays full-length cDNA clone ZM...   139   2e-31
AE017340_1658(AE017340|pid:none) Idiomarina loihiensis L2TR, com...    69   4e-10
BX548175_146(BX548175|pid:none) Prochlorococcus marinus MIT9313 ...    65   4e-09
CP000113_3772(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    65   4e-09
AE005673_199(AE005673|pid:none) Caulobacter crescentus CB15, com...    62   3e-08
CP000554_170(CP000554|pid:none) Prochlorococcus marinus str. MIT...    58   6e-07
CP000927_181(CP000927|pid:none) Caulobacter sp. K31, complete ge...    57   1e-06
CP000749_531(CP000749|pid:none) Marinomonas sp. MWYL1, complete ...    53   2e-05
AE017346_141(AE017346|pid:none) Cryptococcus neoformans var. neo...    47   0.001
CP000681_1742(CP000681|pid:none) Shewanella putrefaciens CN-32, ...    47   0.002
CP000753_1853(CP000753|pid:none) Shewanella baltica OS185, compl...    46   0.002
CP000503_2243(CP000503|pid:none) Shewanella sp. W3-18-1, complet...    46   0.002
CP000563_1825(CP000563|pid:none) Shewanella baltica OS155, compl...    46   0.002
CP001280_657(CP001280|pid:none) Methylocella silvestris BL2, com...    46   0.002
AM269995_4(AM269995|pid:none) Aspergillus niger contig An01c0490...    45   0.004
AM039952_2862(AM039952|pid:none) Xanthomonas campestris pv. vesi...    45   0.004
CP000158_2203(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...    45   0.007
AP008229_3076(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M...    45   0.007
AE013598_3174(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...    45   0.007
AM743169_3218(AM743169|pid:none) Stenotrophomonas maltophilia K2...    44   0.012
CP000469_2378(CP000469|pid:none) Shewanella sp. ANA-3, complete ...    44   0.012
CR378677_214(CR378677|pid:none) Photobacterium profundum SS9 chr...    44   0.012
CP000113_1437(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    44   0.012
CP000020_1669(CP000020|pid:none) Vibrio fischeri ES114 chromosom...    44   0.015
AM920428_1588(AM920428|pid:none) Penicillium chrysogenum Wiscons...    43   0.020
CP001111_2829(CP001111|pid:none) Stenotrophomonas maltophilia R5...    43   0.020
CP001139_1706(CP001139|pid:none) Vibrio fischeri MJ11 chromosome...    43   0.026
CP000302_2288(CP000302|pid:none) Shewanella denitrificans OS217,...    42   0.044
BA000032_866(BA000032|pid:none) Vibrio parahaemolyticus RIMD 221...    42   0.044
CP000821_2631(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...    42   0.044
BX842632_25(BX842632|pid:none) Neurospora crassa DNA linkage gro...    42   0.057
AY973618_1(AY973618|pid:none) Manihot esculenta ACC oxidase ACCO...    41   0.098
CP001341_666(CP001341|pid:none) Arthrobacter chlorophenolicus A6...    41   0.098
CP000155_6499(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    41   0.098
AY086757_1(AY086757|pid:none) Arabidopsis thaliana clone 27387 m...    40   0.13
CP000388_527(CP000388|pid:none) Pseudoalteromonas atlantica T6c,...    40   0.13
CP000447_1476(CP000447|pid:none) Shewanella frigidimarina NCIMB ...    40   0.13
AM398681_1004(AM398681|pid:none) Flavobacterium psychrophilum JI...    40   0.17
CP000826_1619(CP000826|pid:none) Serratia proteamaculans 568, co...    39   0.37
BT070229_1(BT070229|pid:none) Picea sitchensis clone WS02710_A10...    39   0.37
AF506282_1(AF506282|pid:none) Spinacia oleracea gibberellin 2-ox...    39   0.37
CU207366_1599(CU207366|pid:none) Gramella forsetii KT0803 comple...    39   0.37
AM920433_595(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    39   0.37
BT071131_1(BT071131|pid:none) Picea sitchensis clone WS02772_K18...    39   0.37
CP000606_1584(CP000606|pid:none) Shewanella loihica PV-4, comple...    39   0.49
EU393183_1(EU393183|pid:none) Pinus taeda isolate FBRC6 leucoant...    39   0.49
CU633438_716(CU633438|pid:none) Podospora anserina genomic DNA c...    39   0.49
AB067640_1(AB067640|pid:none) Daucus carota Dc2ox2 mRNA for gibb...    39   0.49
CP000790_1070(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch...    39   0.49
AC064879_9(AC064879|pid:none) Arabidopsis thaliana chromosome I ...    38   0.64
CP000437_1381(CP000437|pid:none) Francisella tularensis subsp. h...    38   0.64
AM233362_1732(AM233362|pid:none) Francisella tularensis subsp. h...    38   0.64
AY967064_1(AY967064|pid:none) Synthetic construct isolate FTT015...    38   0.83
CP000608_195(CP000608|pid:none) Francisella tularensis subsp. tu...    38   0.83
CP000439_1510(CP000439|pid:none) Francisella tularensis subsp. n...    38   0.83
AF462865_1(AF462865|pid:none) Arabidopsis thaliana AT5g27950/F15...    38   0.83
AJ749949_155(AJ749949|pid:none) Francisella tularensis subsp. tu...    38   0.83
EF147098_1(EF147098|pid:none) Populus trichocarpa clone WS01227_...    37   1.4
DQ198089_1(DQ198089|pid:none) Camellia sinensis flavonol synthas...    37   1.8
EF205150_1(EF205150|pid:none) Camellia sinensis flavonol synthas...    37   1.8
CP000249_184(CP000249|pid:none) Frankia sp. CcI3, complete genome.     36   2.4
AE016825_45(AE016825|pid:none) Chromobacterium violaceum ATCC 12...    36   2.4
AP007164_418(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   2.4
CP001160_454(CP001160|pid:none) Thalassiosira pseudonana CCMP133...    36   3.2
EU003995_1(EU003995|pid:none) Solanum tuberosum gibberellin 2-ox...    36   3.2
AP000735_10(AP000735|pid:none) Arabidopsis thaliana genomic DNA,...    35   4.1
CP000699_3744(CP000699|pid:none) Sphingomonas wittichii RW1, com...    35   4.1
AE001363_90(AE001363|pid:none) Chlamydophila pneumoniae CWL029, ...    35   4.1
(Q9Z986) RecName: Full=Serine/threonine-protein kinase pknD;    ...    35   4.1
(Q7BS31) RecName: Full=2-oxoglutarate-dependent ethylene/succina...    35   4.1
(P32021) RecName: Full=2-oxoglutarate-dependent ethylene/succina...    35   4.1
AF418232_1(AF418232|pid:none) Arabidopsis thaliana Aa-0 2-oxoglu...    35   5.4
AF418225_1(AF418225|pid:none) Arabidopsis thaliana Pa 2-oxogluta...    35   5.4
AC079029_2(AC079029|pid:none) Oryza sativa chromosome 10 BAC OSJ...    35   5.4
BT029463_1(BT029463|pid:none) Arabidopsis thaliana At4g03060 mRN...    35   5.4
EU284931_1(EU284931|pid:none) TSA: Elaeis guineensis EgEfMPOB001...    35   5.4
FB790634_1(FB790634|pid:none) Sequence 9907 from Patent WO200803...    35   5.4
AF506281_1(AF506281|pid:none) Spinacia oleracea gibberellin 2-ox...    35   5.4
AF418233_1(AF418233|pid:none) Arabidopsis thaliana Hodja 2-oxogl...    35   5.4
AF418229_1(AF418229|pid:none) Arabidopsis thaliana Mt-0 2-oxoglu...    35   5.4
AF418235_1(AF418235|pid:none) Arabidopsis thaliana Per-1 2-oxogl...    35   5.4
AB289599_1(AB289599|pid:none) Rhododendron x pulchrum RpFLS mRNA...    35   5.4
AY588978_1(AY588978|pid:none) Nerium oleander gibberellin 2 oxid...    35   7.0
CP000480_1266(CP000480|pid:none) Mycobacterium smegmatis str. MC...    35   7.0
AF033581_1(AF033581|pid:none) Cucumis sativus ACC oxidase 1 (Cs-...    35   7.0
AB246668_1(AB246668|pid:none) Glycine max gmfls1 mRNA for flavon...    35   7.0
AE017351_279(AE017351|pid:none) Cryptococcus neoformans var. neo...    35   7.0
AY392094_1(AY392094|pid:none) Populus alba x Populus tremuloides...    35   7.0
FB789177_1(FB789177|pid:none) Sequence 8450 from Patent WO200803...    35   7.0
CS406139_1(CS406139|pid:none) Sequence 1 from Patent WO200609119...    35   7.0
EU952634_1(EU952634|pid:none) Zea mays clone 1284979 1-aminocycl...    35   7.0
AB210711_1(AB210711|pid:none) Ciona intestinalis Ci-STAT-a mRNA,...    35   7.0
CP001013_15(CP001013|pid:none) Leptothrix cholodnii SP-6, comple...    35   7.0
AF074710_1(AF074710|pid:none) Citrullus lanatus putative gibbere...    35   7.0
AM920431_935(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    35   7.0
DQ641076_1(DQ641076|pid:none) Cucumis sativus clone CU22F1 ACC o...    35   7.0
EF084078_1(EF084078|pid:none) Picea sitchensis clone WS0272_B01 ...    34   9.2
AP007166_291(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    34   9.2
CP000638_127(CP000638|pid:none) Agrobacterium vitis S4 plasmid p...    34   9.2
CP000462_3489(CP000462|pid:none) Aeromonas hydrophila subsp. hyd...    34   9.2
CP000569_554(CP000569|pid:none) Actinobacillus pleuropneumoniae ...    34   9.2
AB181374_1(AB181374|pid:none) Vigna angularis VaGA2oxB1 mRNA for...    34   9.2
EU711357_1(EU711357|pid:none) Brassica juncea cultivar Heera A g...    34   9.2
CP000644_3313(CP000644|pid:none) Aeromonas salmonicida subsp. sa...    34   9.2
AY044425_1(AY044425|pid:none) Brassica oleracea 2-oxoglutarate-d...    34   9.2
AP007174_196(AP007174|pid:none) Aspergillus oryzae RIB40 genomic...    34   9.2
CT573213_5217(CT573213|pid:none) Frankia alni str. ACN14A chromo...    34   9.2
(P19464) RecName: Full=1-aminocyclopropane-1-carboxylate oxidase...    34   9.2

>AB017064_7(AB017064|pid:none) Arabidopsis thaliana genomic DNA,
            chromosome 5, P1 clone:MDN11.
            &AK227707_1(AK227707|pid:none)
            &AY087978_1(AY087978|pid:none)
            &BT008313_1(BT008313|pid:none)
          Length = 355

 Score =  364 bits (934), Expect = 4e-99
 Identities = 171/335 (51%), Positives = 225/335 (67%), Gaps = 5/335 (1%)
 Frame = +3

Query: 84   FLGFLADPTSAEALEDCKKLVKTLQETSCLVIKHPKVNEEDNSRFLDMMEKYYEQPTEEL 263
            +L F  D   ++ LE C+++ + L+ET  L++K P+   +DN RF+DMME Y+E+P +
Sbjct: 11   YLDFSGDELGSDLLESCRQVSRILKETGALIVKDPRCCAQDNDRFIDMMENYFEKPDDFK 70

Query: 264  MKDVHPEWSYQLGATPEFTEEPR-----DHSEVITKLLPQYAAHAPKGADPKWRFFWRIG 428
                 P   YQ+GATPE  E PR     +  E    +  +Y  H PKG D KWR+ WR+G
Sbjct: 71   RLQQRPNLHYQVGATPEGVEVPRSLVDEEMQEKFNTMPNEYKPHIPKGPDHKWRYMWRVG 130

Query: 429  DRPEDTKFPELNCAPVIPKAFPEWQNVMDSWGSLMLSSIETVSEMIATGYNLPKDSITNL 608
             RP +T+F ELN  PV+P+ FP W+ VMDSWG  M+S++E V+EM A G+ LPKD+ T+L
Sbjct: 131  PRPSNTRFKELNSEPVVPEGFPGWEEVMDSWGYKMISAVEVVAEMAAIGFGLPKDAFTSL 190

Query: 609  MKNGPHLLAPTGSDLKRFGNLDQIFAGFHYDFNLLTIHGKSRYPGLYIWLRDGTRVPVKV 788
            MK GPHLLAPTGSDL  +     IFAG+HYD N LTIHG+SR+PGLYIWLR+G +V VKV
Sbjct: 191  MKQGPHLLAPTGSDLNCYNEEGTIFAGYHYDLNFLTIHGRSRFPGLYIWLRNGEKVAVKV 250

Query: 789  PNGCLLLQAGKQLEWITGGDILAGFHEVVVTEDTLKVMEKSKDEGKSLWRISSTLFGHVA 968
            P GCLL+QAGKQ+EW+T G+ +AG HEVVVT  T   +  +K++ +SLWR+SSTLF H+A
Sbjct: 251  PVGCLLIQAGKQIEWLTAGECIAGMHEVVVTSKTKDAITLAKEQNRSLWRVSSTLFAHIA 310

Query: 969  SDKNLTLLEPFNNPQNLEKYPNILAGKQSEAELEM 1073
            SD  L  L  F       KYP I AG+  E EL +
Sbjct: 311  SDAELKPLGHFAESSLASKYPAIPAGEYVEQELSV 345

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,856,899,591
Number of extensions: 38492949
Number of successful extensions: 109790
Number of sequences better than 10.0: 122
Number of HSP's gapped: 109662
Number of HSP's successfully gapped: 122
Length of query: 407
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 276
Effective length of database: 621,205,444
Effective search space: 171452702544
Effective search space used: 171452702544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.98  gvh: 0.71  alm: 0.45  top: 0.20  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: extracellular, including cell wall
	 16.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U10064-1 is exc
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 10
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0