Contig-U10052-1
Contig ID Contig-U10052-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Contig-U10052-1Q.Seq.d
ATACAATATGTTATACTACAAGAATCAACTCTACATCATCGATGTTTCTC
AATCGGTTGAACATGATCACCCTCATTCATTGGATTTCCTTCGTATGGAT
TGTTCAAACGTTACAGATTTCTTTAGAAAGAAAGAAGTGAACACAATGTT
CATTCAAGAGTTATTCGAATTCATCACAGATTTAACAATTACCGAGGATA
ATATCGATCAATATTTAGAGAAAATGTTAGAGAAAATTCAATCACGTGGT
GAAACAACAGATGAACAAAAAATTCAAGAGGAAGTCTTTAGAAATGCTTA
TATTCCACGTACTTTAGATCAAATTATAGATTTAGATAGAGATATGGAAA
AAATTGAAAGAGGTGAAGGTCGTGATATTTTCTATCAAAATTTAACAGGT
TTAAGTAAAGATTTACAAAATATTAAATCAAAAAATGATTTAATTAATGA
TTCAAATGAAAATAAGGATTCTGATGATTCTTCTTCTGATTCTTCTGAAG
ATTCTGATGATGATTCCGATTCTGATCAATTAAATGAAGATGATGAAAAA
ATTCGTAAATTAGTTGTAATTGATCCAATTACTAAAATGGAAATTAGATT
AGAAGATATGCCTAAAAAAGATCGTAAGAAATTTGTAAAAGAAATGAATA
AAGAAAGAAGAAAAACAAAAATACCAAAACATATTAAAAAATAACTAAAA
AGAGAAAAGCAGAGAAATTGGTAAAAAGAAATAAAATAAATAAAAAATT

Gap no gap
Contig length 749
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3307756
End point 3307080
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U10052
List of clone(s)

est1=VFK327Z,1,634
est2=CFB604Z,123,750
Translated Amino Acid sequence
YNMLYYKNQLYIIDVSQSVEHDHPHSLDFLRMDCSNVTDFFRKKEVNTMFIQELFEFITD
LTITEDNIDQYLEKMLEKIQSRGETTDEQKIQEEVFRNAYIPRTLDQIIDLDRDMEKIER
GEGRDIFYQNLTGLSKDLQNIKSKNDLINDSNENKDSDDSSSDSSEDSDDDSDSDQLNED
DEKIRKLVVIDPITKMEIRLEDMPKKDRKKFVKEMNKERRKTKIPKHIKK*lkrekqrnw
*keik*ikn


Translated Amino Acid sequence (All Frames)
Frame A:
iqyvilqestlhhrcfsig*t*spsfigfpsyglfkryrfl*kersehnvhsrvirihhr
fnnyrg*yrsifrenvrensitw*nnr*tknsrgsl*kclystyfrsnyrfr*rygkn*k
r*rs*yflskfnrfk*rftky*ikk*fn**fk*k*gf**fff*ff*rf***frf*sik*r
**kns*iscn*sny*ngn*irrya*krs*eickrne*rkkknkntkty*kitkkrkaekl
vkrnkinkk


Frame B:
YNMLYYKNQLYIIDVSQSVEHDHPHSLDFLRMDCSNVTDFFRKKEVNTMFIQELFEFITD
LTITEDNIDQYLEKMLEKIQSRGETTDEQKIQEEVFRNAYIPRTLDQIIDLDRDMEKIER
GEGRDIFYQNLTGLSKDLQNIKSKNDLINDSNENKDSDDSSSDSSEDSDDDSDSDQLNED
DEKIRKLVVIDPITKMEIRLEDMPKKDRKKFVKEMNKERRKTKIPKHIKK*lkrekqrnw
*keik*ikn


Frame C:
ticyttrinstssmflnrlnmitlihwisfvwivqtlqislerkk*tqcsfksysnssqi
*qlpriisini*rkc*rkfnhvvkqqmnkkfkrkslemlifhvl*ikl*i*ieiwkklke
vkvvifsiki*qv*vkiykilnqkmi*lmiqmkirilmilllillkilmmipilin*mkm
mkkfvn*l*liqllkwkld*kiclkkivrnl*kk*ikkeekqkyqnilknn*keksreig
kkk*nk*ki


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10052-1 (Contig-U10052-1Q)
/CSM_Contig/Contig-U10052-1Q.Seq.d
(749 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Conti... 924 0.0
Contig-U07559-1 (Contig-U07559-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U01577-1 (Contig-U01577-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U04481-1 (Contig-U04481-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U03801-1 (Contig-U03801-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U13907-1 (Contig-U13907-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U13760-1 (Contig-U13760-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U13021-1 (Contig-U13021-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U11513-1 (Contig-U11513-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti... 36 0.053

>Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Contig-U10052-1Q.Seq.d
Length = 749

Score = 924 bits (466), Expect = 0.0
Identities = 466/466 (100%)
Strand = Plus / Plus


Query: 1 atacaatatgttatactacaagaatcaactctacatcatcgatgtttctcaatcggttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atacaatatgttatactacaagaatcaactctacatcatcgatgtttctcaatcggttga 60


Query: 61 acatgatcaccctcattcattggatttccttcgtatggattgttcaaacgttacagattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acatgatcaccctcattcattggatttccttcgtatggattgttcaaacgttacagattt 120


Query: 121 ctttagaaagaaagaagtgaacacaatgttcattcaagagttattcgaattcatcacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctttagaaagaaagaagtgaacacaatgttcattcaagagttattcgaattcatcacaga 180


Query: 181 tttaacaattaccgaggataatatcgatcaatatttagagaaaatgttagagaaaattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttaacaattaccgaggataatatcgatcaatatttagagaaaatgttagagaaaattca 240


Query: 241 atcacgtggtgaaacaacagatgaacaaaaaattcaagaggaagtctttagaaatgctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcacgtggtgaaacaacagatgaacaaaaaattcaagaggaagtctttagaaatgctta 300


Query: 301 tattccacgtactttagatcaaattatagatttagatagagatatggaaaaaattgaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tattccacgtactttagatcaaattatagatttagatagagatatggaaaaaattgaaag 360


Query: 361 aggtgaaggtcgtgatattttctatcaaaatttaacaggtttaagtaaagatttacaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggtgaaggtcgtgatattttctatcaaaatttaacaggtttaagtaaagatttacaaaa 420


Query: 421 tattaaatcaaaaaatgatttaattaatgattcaaatgaaaataag 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tattaaatcaaaaaatgatttaattaatgattcaaatgaaaataag 466


Score = 200 bits (101), Expect = 2e-51
Identities = 101/101 (100%)
Strand = Plus / Plus


Query: 512 gattccgattctgatcaattaaatgaagatgatgaaaaaattcgtaaattagttgtaatt 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gattccgattctgatcaattaaatgaagatgatgaaaaaattcgtaaattagttgtaatt 571


Query: 572 gatccaattactaaaatggaaattagattagaagatatgcc 612
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gatccaattactaaaatggaaattagattagaagatatgcc 612


>Contig-U07559-1 (Contig-U07559-1Q) /CSM_Contig/Contig-U07559-1Q.Seq.d
Length = 598

Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 424 taaatcaaaaaatgatttaattaat 448
||||||||||||||| |||||||||
Sbjct: 470 taaatcaaaaaatgaattaattaat 446


>Contig-U01577-1 (Contig-U01577-1Q) /CSM_Contig/Contig-U01577-1Q.Seq.d
Length = 950

Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 526 tcaattaaatgaagatgatgaaaa 549
||||||||||||| ||||||||||
Sbjct: 426 tcaattaaatgaaaatgatgaaaa 449


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9679
Number of Sequences: 6905
Number of extensions: 9679
Number of successful extensions: 1202
Number of sequences better than 10.0: 159
length of query: 749
length of database: 5,674,871
effective HSP length: 16
effective length of query: 733
effective length of database: 5,564,391
effective search space: 4078698603
effective search space used: 4078698603
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Contig-U10052-1Q.Seq.d
(749 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433273) Dictyostelium discoideum cDNA clone:ddv21f07, 3' ... 803 0.0 3
(BJ373804) Dictyostelium discoideum cDNA clone:ddc4g02, 3' e... 555 e-178 2
(DR846595) JGI_CABE10992.fwd NIH_XGC_tropOva1 Xenopus (Silur... 70 1e-07 1
(DR843293) JGI_CABE9262.fwd NIH_XGC_tropOva1 Xenopus (Silura... 70 1e-07 1
(DC155468) Xenopus tropicalis NBRP cDNA clone:rst76g15, 3' end. 70 1e-07 1
(CR413245) Xenopus tropicalis EST, clone TTbA010l07 5'. 70 1e-07 1
(BC125996) Xenopus laevis cDNA clone IMAGE:4963663. 62 3e-05 1
(BC089140) Xenopus laevis hypothetical protein LOC733148, mR... 62 3e-05 1
(BC160775) Xenopus laevis hypothetical protein LOC733148, mR... 58 5e-04 1
(CV458288) pam01-24ms1-a02 Pam01 Persea americana cDNA clone... 56 0.002 1
(AC131123) Rattus norvegicus clone CH230-5C18, WORKING DRAFT... 50 0.12 1
(AC118376) Rattus norvegicus clone CH230-71O15, *** SEQUENCI... 50 0.12 1
(AC117875) Rattus norvegicus clone CH230-366P15, WORKING DRA... 50 0.12 1
(CU570936) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.48 1
(CU468239) S.lycopersicum DNA sequence from clone SL_MboI-12... 40 0.64 2
(AF303741) Chilo iridescent virus complete genome. 46 1.9 1
(CT573216) Medicago truncatula chromosome 5 clone mte1-79f1,... 46 1.9 1
(CR382129) Yarrowia lipolytica chromosome C of strain CLIB12... 46 1.9 1
(AC129092) Medicago truncatula clone mth2-17n16, complete se... 46 1.9 1
(AC120488) Rattus norvegicus clone CH230-120E16, *** SEQUENC... 46 1.9 1
(CW555415) OA_ABa0075J02.r OA_ABa Oryza australiensis genomi... 46 1.9 1
(DC156008) Xenopus tropicalis NBRP cDNA clone:rst78g15, 3' end. 46 1.9 1
(BE480334) 165383 BARC 5BOV Bos taurus cDNA 5', mRNA sequence. 46 1.9 1
(CU329672) Schizosaccharomyces pombe chromosome III. 34 3.0 2
(AC113983) Mus musculus chromosome 5, clone RP24-95M11, comp... 44 7.5 1
(AC102896) Mus musculus chromosome 5, clone RP24-353A8, comp... 44 7.5 1
(EF625820) Carica papaya clone MSY BAC PH76M08 complete sequ... 44 7.5 1
(AC161655) Bos taurus clone CH240-105L9, WORKING DRAFT SEQUE... 44 7.5 1
(AC131222) Rattus norvegicus clone CH230-67I6, *** SEQUENCIN... 44 7.5 1
(AC125711) Rattus norvegicus clone CH230-34F4, *** SEQUENCIN... 44 7.5 1
(AC114623) Mus musculus clone RP24-104G17, WORKING DRAFT SEQ... 44 7.5 1
(AC112854) Rattus norvegicus clone CH230-253G17, WORKING DRA... 44 7.5 1
(AC112281) Rattus norvegicus clone CH230-30M16, *** SEQUENCI... 44 7.5 1
(AC107496) Rattus norvegicus clone CH230-103L6, *** SEQUENCI... 44 7.5 1
(AC106208) Rattus norvegicus clone CH230-36I7, WORKING DRAFT... 44 7.5 1
(CU861531) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.5 1
(CU571340) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.5 1
(AC230835) Bos taurus clone CH240-498B24, WORKING DRAFT SEQU... 44 7.5 1
(AC218848) Bos taurus clone CH240-292G20, WORKING DRAFT SEQU... 44 7.5 1
(AC185938) Bos taurus clone RP42-83O13, WORKING DRAFT SEQUEN... 44 7.5 1
(AC173464) Sorex araneus clone SA_Ba-399K20, WORKING DRAFT S... 44 7.5 1
(AC166922) Bos taurus clone CH240-190O23, WORKING DRAFT SEQU... 44 7.5 1
(DH697698) Rattus norvegicus DNA, BAC clone: RNB1-256L23, 3'... 44 7.5 1
(DH690908) Rattus norvegicus DNA, BAC clone: RNB1-247J22, 5'... 44 7.5 1
(CR824993) GR0AAA55DH08FM1 INRA BAC Bos taurus genomic clone... 44 7.5 1
(CR806167) GR0AAA28AB05FM1 INRA BAC Bos taurus genomic clone... 44 7.5 1
(CR804856) GR0AAA26AH06FM1 INRA BAC Bos taurus genomic clone... 44 7.5 1
(EL462199) CHTS16729.b1_A08.ab1 CHT(LMS) Jerusalem artichoke... 44 7.5 1
(DY289044) IC0AAA71BC04RM1 CitNFL Citrus clementina cDNA 5',... 44 7.5 1
(DN844478) KECB08-333.g-T7 NVH bovine early embryo cDNA libr... 44 7.5 1
(DC593180) Lotus japonicus mRNA, clone: GENLr034h11, 5' end ... 44 7.5 1
(BG217966) RST37690 Athersys RAGE Library Homo sapiens cDNA,... 44 7.5 1
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 44 7.5 1
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 44 7.5 1
(AB292356) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1
(AB292355) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1
(AB292354) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1
(AB292353) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1
(AB292352) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1
(AB292351) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1

>(BJ433273) Dictyostelium discoideum cDNA clone:ddv21f07, 3' end,
single read.
Length = 628

Score = 803 bits (405), Expect(3) = 0.0
Identities = 405/405 (100%)
Strand = Plus / Minus


Query: 1 atacaatatgttatactacaagaatcaactctacatcatcgatgtttctcaatcggttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atacaatatgttatactacaagaatcaactctacatcatcgatgtttctcaatcggttga 569


Query: 61 acatgatcaccctcattcattggatttccttcgtatggattgttcaaacgttacagattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 acatgatcaccctcattcattggatttccttcgtatggattgttcaaacgttacagattt 509


Query: 121 ctttagaaagaaagaagtgaacacaatgttcattcaagagttattcgaattcatcacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctttagaaagaaagaagtgaacacaatgttcattcaagagttattcgaattcatcacaga 449


Query: 181 tttaacaattaccgaggataatatcgatcaatatttagagaaaatgttagagaaaattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttaacaattaccgaggataatatcgatcaatatttagagaaaatgttagagaaaattca 389


Query: 241 atcacgtggtgaaacaacagatgaacaaaaaattcaagaggaagtctttagaaatgctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atcacgtggtgaaacaacagatgaacaaaaaattcaagaggaagtctttagaaatgctta 329


Query: 301 tattccacgtactttagatcaaattatagatttagatagagatatggaaaaaattgaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tattccacgtactttagatcaaattatagatttagatagagatatggaaaaaattgaaag 269


Query: 361 aggtgaaggtcgtgatattttctatcaaaatttaacaggtttaag 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aggtgaaggtcgtgatattttctatcaaaatttaacaggtttaag 224

Score = 44.1 bits (22), Expect(3) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Minus


Query: 547 aaaaattcgtaaattagttgta 568
||||||||||||||||||||||
Sbjct: 83 aaaaattcgtaaattagttgta 62

Score = 30.2 bits (15), Expect(3) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 573 atccaattactaaaa 587
|||||||||||||||
Sbjct: 59 atccaattactaaaa 45

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 554,486,583
Number of extensions: 34665347
Number of successful extensions: 2573157
Number of sequences better than 10.0: 60
Length of query: 749
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 725
Effective length of database: 97,308,875,965
Effective search space: 70548935074625
Effective search space used: 70548935074625
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Contig-U10052-1Q.Seq.d
(749 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC079173_1(BC079173|pid:none) Rattus norvegicus RIO kinase 1 (ye... 172 8e-42
CR388093_6(CR388093|pid:none) Zebrafish DNA sequence from clone ... 171 2e-41
(Q922Q2) RecName: Full=Serine/threonine-protein kinase RIO1; ... 170 4e-41
BC002158_1(BC002158|pid:none) Mus musculus RIO kinase 1 (yeast),... 170 4e-41
EF044030_1(EF044030|pid:none) Synthetic construct clone ATCC 106... 170 4e-41
BC160775_1(BC160775|pid:none) Xenopus laevis hypothetical protei... 170 5e-41
AL138878_1(AL138878|pid:none) Human DNA sequence from clone RP11... 169 8e-41
AY335583_1(AY335583|pid:none) Synthetic construct Homo sapiens A... 169 8e-41
AF258661_1(AF258661|pid:none) Homo sapiens AD034 mRNA, complete ... 169 8e-41
AL834277_1(AL834277|pid:none) Homo sapiens mRNA; cDNA DKFZp547L2... 169 8e-41
(Q9BRS2) RecName: Full=Serine/threonine-protein kinase RIO1; ... 169 8e-41
AE014296_2121(AE014296|pid:none) Drosophila melanogaster chromos... 159 1e-37
AB120324_1(AB120324|pid:none) Nicotiana tabacum NtRIO mRNA for R... 157 3e-37
BC089140_1(BC089140|pid:none) Xenopus laevis hypothetical protei... 153 6e-36
AK054568_1(AK054568|pid:none) Homo sapiens cDNA FLJ30006 fis, cl... 148 2e-34
AC006585_8(AC006585|pid:none) Arabidopsis thaliana chromosome 2 ... 148 2e-34
AY088156_1(AY088156|pid:none) Arabidopsis thaliana clone 42141 m... 147 3e-34
AK176351_1(AK176351|pid:none) Arabidopsis thaliana mRNA, complet... 147 3e-34
AY062719_1(AY062719|pid:none) Arabidopsis thaliana SUDD-like pro... 140 4e-32
AM270009_9(AM270009|pid:none) Aspergillus niger contig An02c0140... 135 2e-30
BX284753_9(BX284753|pid:none) Neurospora crassa DNA linkage grou... 134 3e-30
AM920427_1283(AM920427|pid:none) Penicillium chrysogenum Wiscons... 134 4e-30
AF013590_1(AF013590|pid:none) Emericella nidulans extragenic sup... 126 8e-28
CU633900_15(CU633900|pid:none) Podospora anserina genomic DNA ch... 117 5e-25
FN357334_5(FN357334|pid:none) Schistosoma mansoni genome sequenc... 109 8e-23
CP000496_948(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 109 1e-22
AF067624_5(AF067624|pid:none) Caenorhabditis elegans cosmid M01B... 106 7e-22
T33172(T33172)hypothetical protein M01B12.5 - Caenorhabditis ele... 106 7e-22
FM992688_1010(FM992688|pid:none) Candida dubliniensis CD36 chrom... 106 7e-22
CR382139_643(CR382139|pid:none) Debaryomyces hansenii strain CBS... 104 3e-21
AC123899_22(AC123899|pid:none) Medicago truncatula clone mth2-33... 102 1e-20
AE017356_177(AE017356|pid:none) Cryptococcus neoformans var. neo... 102 2e-20
BT069603_1(BT069603|pid:none) Zea mays full-length cDNA clone ZM... 98 2e-19
AC093543_31(AC093543|pid:none) Trypanosoma brucei chromosome 3 c... 85 3e-15
AM502247_40(AM502247|pid:none) Leishmania infantum chromosome 29. 82 2e-14
AM494966_25(AM494966|pid:none) Leishmania braziliensis chromosom... 79 1e-13
CU928178_421(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 78 3e-13
CR940347_344(CR940347|pid:none) Theileria annulata strain Ankara... 76 1e-12
BC077112_1(BC077112|pid:none) Danio rerio RIO kinase 3 (yeast), ... 76 1e-12
AM910996_474(AM910996|pid:none) Plasmodium knowlesi strain H chr... 75 2e-12
BC060398_1(BC060398|pid:none) Xenopus laevis hypothetical protei... 74 4e-12
CU928170_670(CU928170|pid:none) Kluyveromyces thermotolerans str... 74 4e-12
BT045996_1(BT045996|pid:none) Salmo salar clone ssal-rgf-538-310... 73 1e-11
BC075585_1(BC075585|pid:none) Xenopus tropicalis MGC89575 protei... 72 1e-11
BC077936_1(BC077936|pid:none) Xenopus laevis RIO kinase 3 (yeast... 72 2e-11
AK303938_1(AK303938|pid:none) Homo sapiens cDNA FLJ54233 complet... 71 3e-11
X96739_1(X96739|pid:none) S.cerevisiae RIO1 gene. 70 7e-11
AB169383_1(AB169383|pid:none) Macaca fascicularis testis cDNA, c... 70 9e-11
CR858252_1(CR858252|pid:none) Pongo abelii mRNA; cDNA DKFZp469N1... 70 9e-11
AK147074_1(AK147074|pid:none) Mus musculus 17 days pregnant adul... 69 1e-10
AK134327_1(AK134327|pid:none) Mus musculus 13 days embryo male t... 69 1e-10
AK011110_1(AK011110|pid:none) Mus musculus 13 days embryo liver ... 69 1e-10
(Q9DBU3) RecName: Full=Serine/threonine-protein kinase RIO3; ... 69 1e-10
(Q1RMT7) RecName: Full=Serine/threonine-protein kinase RIO3; ... 69 1e-10
AE014134_831(AE014134|pid:none) Drosophila melanogaster chromoso... 69 2e-10
AB169115_1(AB169115|pid:none) Macaca fascicularis testis cDNA, c... 68 3e-10
AK167309_1(AK167309|pid:none) Mus musculus 13 days pregnant adul... 67 6e-10
BC039729_1(BC039729|pid:none) Homo sapiens RIO kinase 3 (yeast),... 64 5e-09
AY596297_2196(AY596297|pid:none) Haloarcula marismortui ATCC 430... 57 5e-07
CP000780_2446(CP000780|pid:none) Candidatus Methanoregula boonei... 57 6e-07
AL590445_110(AL590445|pid:none) chromosome V of strain GB-M1 of ... 56 1e-06
BA000011_1203(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 55 2e-06
AE017261_252(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 54 5e-06
CP001365_2625(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 50 6e-05
CP001338_2651(CP001338|pid:none) Candidatus Methanosphaerula pal... 50 1e-04
(Q03021) RecName: Full=RIO-type serine/threonine-protein kinase ... 49 1e-04
BA000023_566(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 49 1e-04
AE004437_1712(AE004437|pid:none) Halobacterium sp. NRC-1, comple... 49 2e-04
AM180088_2481(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 49 2e-04
AM774415_1779(AM774415|pid:none) Halobacterium salinarum complet... 49 2e-04
(Q57886) RecName: Full=RIO-type serine/threonine-protein kinase ... 49 2e-04
CP001400_170(CP001400|pid:none) Sulfolobus islandicus M.14.25, c... 49 2e-04
AE017199_449(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, co... 48 4e-04
CP001399_203(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 47 5e-04
CP000866_1406(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 47 5e-04
CP000575_1088(CP000575|pid:none) Staphylothermus marinus F1, com... 47 6e-04
CP000254_2383(CP000254|pid:none) Methanospirillum hungatei JF-1,... 45 0.003
CR936257_654(CR936257|pid:none) Natronomonas pharaonis DSM 2160 ... 44 0.004
CP000852_489(CP000852|pid:none) Caldivirga maquilingensis IC-167... 44 0.004
AM114193_2910(AM114193|pid:none) Uncultured methanogenic archaeo... 44 0.004
BX950229_604(BX950229|pid:none) Methanococcus maripaludis strain... 44 0.005
CP000867_283(CP000867|pid:none) Methanococcus maripaludis C6, co... 44 0.005
CP000743_586(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 43 0.012
CP000099_2747(CP000099|pid:none) Methanosarcina barkeri str. Fus... 43 0.012
CP000505_509(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 43 0.012
AE008384_3081(AE008384|pid:none) Methanosarcina mazei strain Goe... 42 0.016
AE009439_514(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 42 0.027
CP000742_1455(CP000742|pid:none) Methanococcus vannielii SB, com... 41 0.035
CP000609_991(CP000609|pid:none) Methanococcus maripaludis C5, co... 41 0.035
CP001140_1084(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 41 0.046
CP000678_952(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 39 0.13
CP000504_683(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 37 0.50
CP000562_2485(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 37 0.66
(B2AS96) RecName: Full=Actin cytoskeleton-regulatory complex pro... 37 0.66
CP000504_765(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 37 0.86
CP000493_68(CP000493|pid:none) Hyperthermus butylicus DSM 5456, ... 36 1.1
AP006878_802(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 36 1.1
CP001014_1934(CP001014|pid:none) Thermoproteus neutrophilus V24S... 36 1.5
AK038690_1(AK038690|pid:none) Mus musculus adult male hypothalam... 36 1.5
CR382125_322(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 36 1.5
(P14873) RecName: Full=Microtubule-associated protein 1B; ... 36 1.5
CP000562_480(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 36 1.5
CP000561_1165(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 35 1.9
CP000509_3185(CP000509|pid:none) Nocardioides sp. JS614, complet... 35 1.9
CP001279_767(CP001279|pid:none) Nautilia profundicola AmH, compl... 35 1.9
CP000099_1732(CP000099|pid:none) Methanosarcina barkeri str. Fus... 35 1.9
AP006878_699(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 35 1.9
GM016639_278(GM016639|pid:none) Sequence 1469 from Patent EP1923... 35 1.9
AM432326_6(AM432326|pid:none) Vitis vinifera contig VV78X248522.... 35 1.9
CP000916_317(CP000916|pid:none) Thermotoga neapolitana DSM 4359,... 35 2.5
CP000013_73(CP000013|pid:none) Borrelia garinii PBi, complete ge... 35 3.3
CP000682_652(CP000682|pid:none) Metallosphaera sedula DSM 5348, ... 35 3.3
CP000300_865(CP000300|pid:none) Methanococcoides burtonii DSM 62... 35 3.3
AP009552_3056(AP009552|pid:none) Microcystis aeruginosa NIES-843... 35 3.3
CP001133_767(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ... 34 4.3
AM295250_2270(AM295250|pid:none) Staphylococcus carnosus subsp. ... 34 4.3
AE009439_1399(AE009439|pid:none) Methanopyrus kandleri AV19, com... 34 4.3
AE009439_1000(AE009439|pid:none) Methanopyrus kandleri AV19, com... 34 4.3
CP000021_692(CP000021|pid:none) Vibrio fischeri ES114 chromosome... 34 4.3
X64224_1(X64224|pid:none) M.musculus mRNA for Fc E receptor II (... 34 5.6
A75301(A75301) SudD-related protein - Deinococcus radiodurans (s... 34 5.6
AL590734_31(AL590734|pid:none) Leishmania major strain Friedlin ... 34 5.6
S67074_1(S67074|pid:none) Mus musculus low affinity IgE Fc recep... 34 5.6
CT005268_86(CT005268|pid:none) Leishmania major strain Friedlin,... 34 5.6
CR380959_518(CR380959|pid:none) Candida glabrata strain CBS138 c... 34 5.6
AP010656_680(AP010656|pid:none) Candidatus Azobacteroides pseudo... 34 5.6
AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte... 34 5.6
JC5497(JC5497;PC4334;S37561) claustrin - chicken &X67778_1(X677... 33 7.3
AF520782_1(AF520782|pid:none) Thermotoga neapolitana NADH:polysu... 33 7.3
CP000702_77(CP000702|pid:none) Thermotoga petrophila RKU-1, comp... 33 7.3
AJ871361_1(AJ871361|pid:none) Nyctotherus ovalis partial gene fo... 33 7.3
DQ645890_1(DQ645890|pid:none) Caenorhabditis elegans CIR-1 (cir-... 33 7.3
(Q498F0) RecName: Full=WD repeat-containing protein 44; &BC1002... 33 9.5
CP001230_1706(CP001230|pid:none) Persephonella marina EX-H1, com... 33 9.5
CU633459_34(CU633459|pid:none) Podospora anserina genomic DNA ch... 33 9.5
CP001185_1869(CP001185|pid:none) Thermosipho africanus TCF52B, c... 33 9.5
A69001(A69001) conserved hypothetical protein MTH1005 - Methanob... 33 9.5
AP008230_4010(AP008230|pid:none) Desulfitobacterium hafniense Y5... 33 9.5
AE016817_231(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 33 9.5
AB463119_1(AB463119|pid:none) Synthetic construct DNA, clone: pF... 33 9.5
BC108387_1(BC108387|pid:none) Mus musculus a disintegrin and met... 33 9.5

>BC079173_1(BC079173|pid:none) Rattus norvegicus RIO kinase 1 (yeast),
mRNA (cDNA clone IMAGE:7130073), partial cds.
Length = 560

Score = 172 bits (437), Expect = 8e-42
Identities = 101/247 (40%), Positives = 137/247 (55%), Gaps = 11/247 (4%)
Frame = +2

Query: 2 YNMLYYKNQLYIIDVSQSVEHDHPHSLDFLRMDCSNVTDFFRKKEVNTMFIQELFEFITD 181
+NMLY+ +YIIDVSQSVEHDHPH+L+FLR DC+NV DFF K V M ++ELFEF+TD
Sbjct: 326 FNMLYHGGDVYIIDVSQSVEHDHPHALEFLRKDCANVNDFFFKHAVAVMTVKELFEFVTD 385

Query: 182 LTITEDNIDQYLEKMLEKIQSR--GETTDEQKIQEEVFRNAYIPRTLDQIIDLDRDMEKI 355
+IT +NID YLEK +E R E T + + EEVF+ AYIPRTL+++ + +RD++ +
Sbjct: 386 PSITLENIDAYLEKAMEIASQRTMEEKTSQDHVDEEVFKQAYIPRTLNEVKNYERDVDIM 445

Query: 356 ERGEGRD---------IFYQNLTGLSKDLQNIKSKNDLIXXXXXXXXXXXXXXXXXXXXX 508
R + D I YQ +TGL KDL ++ L+
Sbjct: 446 MRLKEEDMALNTQQDNILYQTVTGLKKDLSGVQKVPALLESEVKEETCFDSDDAGSSECS 505

Query: 509 XXXXXXXXXXXXXKIRKLVVIDPITKMEIRLEDMPKKDRKKFVKEMNKERRKTKIPKHIK 688
+ DP D+ KK+RKK VKE +E+RK KIPKH+K
Sbjct: 506 DTDPEEQGDQAGCQNH---TADP---------DVDKKERKKMVKEAQREKRKNKIPKHVK 553

Query: 689 K*LKREK 709
K K++K
Sbjct: 554 KKKKKKK 560

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 775,255,768
Number of extensions: 12406638
Number of successful extensions: 43109
Number of sequences better than 10.0: 141
Number of HSP's gapped: 42863
Number of HSP's successfully gapped: 170
Length of query: 249
Length of database: 1,040,966,779
Length adjustment: 125
Effective length of query: 124
Effective length of database: 640,431,154
Effective search space: 79413463096
Effective search space used: 79413463096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.68 gvh: 0.26 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.20 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U10052-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0