Contig-U10052-1 |
Contig ID |
Contig-U10052-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
749 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
3307756 |
End point |
3307080 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U10052 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.18 |
Homology vs DNA |
Query= Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Contig-U10052-1Q.Seq.d (749 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ433273) Dictyostelium discoideum cDNA clone:ddv21f07, 3' ... 803 0.0 3 (BJ373804) Dictyostelium discoideum cDNA clone:ddc4g02, 3' e... 555 e-178 2 (DR846595) JGI_CABE10992.fwd NIH_XGC_tropOva1 Xenopus (Silur... 70 1e-07 1 (DR843293) JGI_CABE9262.fwd NIH_XGC_tropOva1 Xenopus (Silura... 70 1e-07 1 (DC155468) Xenopus tropicalis NBRP cDNA clone:rst76g15, 3' end. 70 1e-07 1 (CR413245) Xenopus tropicalis EST, clone TTbA010l07 5'. 70 1e-07 1 (BC125996) Xenopus laevis cDNA clone IMAGE:4963663. 62 3e-05 1 (BC089140) Xenopus laevis hypothetical protein LOC733148, mR... 62 3e-05 1 (BC160775) Xenopus laevis hypothetical protein LOC733148, mR... 58 5e-04 1 (CV458288) pam01-24ms1-a02 Pam01 Persea americana cDNA clone... 56 0.002 1 (AC131123) Rattus norvegicus clone CH230-5C18, WORKING DRAFT... 50 0.12 1 (AC118376) Rattus norvegicus clone CH230-71O15, *** SEQUENCI... 50 0.12 1 (AC117875) Rattus norvegicus clone CH230-366P15, WORKING DRA... 50 0.12 1 (CU570936) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.48 1 (CU468239) S.lycopersicum DNA sequence from clone SL_MboI-12... 40 0.64 2 (AF303741) Chilo iridescent virus complete genome. 46 1.9 1 (CT573216) Medicago truncatula chromosome 5 clone mte1-79f1,... 46 1.9 1 (CR382129) Yarrowia lipolytica chromosome C of strain CLIB12... 46 1.9 1 (AC129092) Medicago truncatula clone mth2-17n16, complete se... 46 1.9 1 (AC120488) Rattus norvegicus clone CH230-120E16, *** SEQUENC... 46 1.9 1 (CW555415) OA_ABa0075J02.r OA_ABa Oryza australiensis genomi... 46 1.9 1 (DC156008) Xenopus tropicalis NBRP cDNA clone:rst78g15, 3' end. 46 1.9 1 (BE480334) 165383 BARC 5BOV Bos taurus cDNA 5', mRNA sequence. 46 1.9 1 (CU329672) Schizosaccharomyces pombe chromosome III. 34 3.0 2 (AC113983) Mus musculus chromosome 5, clone RP24-95M11, comp... 44 7.5 1 (AC102896) Mus musculus chromosome 5, clone RP24-353A8, comp... 44 7.5 1 (EF625820) Carica papaya clone MSY BAC PH76M08 complete sequ... 44 7.5 1 (AC161655) Bos taurus clone CH240-105L9, WORKING DRAFT SEQUE... 44 7.5 1 (AC131222) Rattus norvegicus clone CH230-67I6, *** SEQUENCIN... 44 7.5 1 (AC125711) Rattus norvegicus clone CH230-34F4, *** SEQUENCIN... 44 7.5 1 (AC114623) Mus musculus clone RP24-104G17, WORKING DRAFT SEQ... 44 7.5 1 (AC112854) Rattus norvegicus clone CH230-253G17, WORKING DRA... 44 7.5 1 (AC112281) Rattus norvegicus clone CH230-30M16, *** SEQUENCI... 44 7.5 1 (AC107496) Rattus norvegicus clone CH230-103L6, *** SEQUENCI... 44 7.5 1 (AC106208) Rattus norvegicus clone CH230-36I7, WORKING DRAFT... 44 7.5 1 (CU861531) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.5 1 (CU571340) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.5 1 (AC230835) Bos taurus clone CH240-498B24, WORKING DRAFT SEQU... 44 7.5 1 (AC218848) Bos taurus clone CH240-292G20, WORKING DRAFT SEQU... 44 7.5 1 (AC185938) Bos taurus clone RP42-83O13, WORKING DRAFT SEQUEN... 44 7.5 1 (AC173464) Sorex araneus clone SA_Ba-399K20, WORKING DRAFT S... 44 7.5 1 (AC166922) Bos taurus clone CH240-190O23, WORKING DRAFT SEQU... 44 7.5 1 (DH697698) Rattus norvegicus DNA, BAC clone: RNB1-256L23, 3'... 44 7.5 1 (DH690908) Rattus norvegicus DNA, BAC clone: RNB1-247J22, 5'... 44 7.5 1 (CR824993) GR0AAA55DH08FM1 INRA BAC Bos taurus genomic clone... 44 7.5 1 (CR806167) GR0AAA28AB05FM1 INRA BAC Bos taurus genomic clone... 44 7.5 1 (CR804856) GR0AAA26AH06FM1 INRA BAC Bos taurus genomic clone... 44 7.5 1 (EL462199) CHTS16729.b1_A08.ab1 CHT(LMS) Jerusalem artichoke... 44 7.5 1 (DY289044) IC0AAA71BC04RM1 CitNFL Citrus clementina cDNA 5',... 44 7.5 1 (DN844478) KECB08-333.g-T7 NVH bovine early embryo cDNA libr... 44 7.5 1 (DC593180) Lotus japonicus mRNA, clone: GENLr034h11, 5' end ... 44 7.5 1 (BG217966) RST37690 Athersys RAGE Library Homo sapiens cDNA,... 44 7.5 1 (CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 44 7.5 1 (AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 44 7.5 1 (AB292356) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1 (AB292355) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1 (AB292354) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1 (AB292353) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1 (AB292352) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1 (AB292351) Campylobacter lari CDT operon (cdtA, cdtB, cdtC g... 44 7.5 1
>(BJ433273) Dictyostelium discoideum cDNA clone:ddv21f07, 3' end, single read. Length = 628
Score = 803 bits (405), Expect(3) = 0.0 Identities = 405/405 (100%) Strand = Plus / Minus
Query: 1 atacaatatgttatactacaagaatcaactctacatcatcgatgtttctcaatcggttga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 628 atacaatatgttatactacaagaatcaactctacatcatcgatgtttctcaatcggttga 569
Query: 61 acatgatcaccctcattcattggatttccttcgtatggattgttcaaacgttacagattt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 acatgatcaccctcattcattggatttccttcgtatggattgttcaaacgttacagattt 509
Query: 121 ctttagaaagaaagaagtgaacacaatgttcattcaagagttattcgaattcatcacaga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 ctttagaaagaaagaagtgaacacaatgttcattcaagagttattcgaattcatcacaga 449
Query: 181 tttaacaattaccgaggataatatcgatcaatatttagagaaaatgttagagaaaattca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 tttaacaattaccgaggataatatcgatcaatatttagagaaaatgttagagaaaattca 389
Query: 241 atcacgtggtgaaacaacagatgaacaaaaaattcaagaggaagtctttagaaatgctta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 atcacgtggtgaaacaacagatgaacaaaaaattcaagaggaagtctttagaaatgctta 329
Query: 301 tattccacgtactttagatcaaattatagatttagatagagatatggaaaaaattgaaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 tattccacgtactttagatcaaattatagatttagatagagatatggaaaaaattgaaag 269
Query: 361 aggtgaaggtcgtgatattttctatcaaaatttaacaggtttaag 405 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 aggtgaaggtcgtgatattttctatcaaaatttaacaggtttaag 224
Score = 44.1 bits (22), Expect(3) = 0.0 Identities = 22/22 (100%) Strand = Plus / Minus
Query: 547 aaaaattcgtaaattagttgta 568 |||||||||||||||||||||| Sbjct: 83 aaaaattcgtaaattagttgta 62
Score = 30.2 bits (15), Expect(3) = 0.0 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 573 atccaattactaaaa 587 ||||||||||||||| Sbjct: 59 atccaattactaaaa 45
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 554,486,583 Number of extensions: 34665347 Number of successful extensions: 2573157 Number of sequences better than 10.0: 60 Length of query: 749 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 725 Effective length of database: 97,308,875,965 Effective search space: 70548935074625 Effective search space used: 70548935074625 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.27 |
Homology vs Protein |
Query= Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Contig-U10052-1Q.Seq.d (749 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BC079173_1(BC079173|pid:none) Rattus norvegicus RIO kinase 1 (ye... 172 8e-42 CR388093_6(CR388093|pid:none) Zebrafish DNA sequence from clone ... 171 2e-41 (Q922Q2) RecName: Full=Serine/threonine-protein kinase RIO1; ... 170 4e-41 BC002158_1(BC002158|pid:none) Mus musculus RIO kinase 1 (yeast),... 170 4e-41 EF044030_1(EF044030|pid:none) Synthetic construct clone ATCC 106... 170 4e-41 BC160775_1(BC160775|pid:none) Xenopus laevis hypothetical protei... 170 5e-41 AL138878_1(AL138878|pid:none) Human DNA sequence from clone RP11... 169 8e-41 AY335583_1(AY335583|pid:none) Synthetic construct Homo sapiens A... 169 8e-41 AF258661_1(AF258661|pid:none) Homo sapiens AD034 mRNA, complete ... 169 8e-41 AL834277_1(AL834277|pid:none) Homo sapiens mRNA; cDNA DKFZp547L2... 169 8e-41 (Q9BRS2) RecName: Full=Serine/threonine-protein kinase RIO1; ... 169 8e-41 AE014296_2121(AE014296|pid:none) Drosophila melanogaster chromos... 159 1e-37 AB120324_1(AB120324|pid:none) Nicotiana tabacum NtRIO mRNA for R... 157 3e-37 BC089140_1(BC089140|pid:none) Xenopus laevis hypothetical protei... 153 6e-36 AK054568_1(AK054568|pid:none) Homo sapiens cDNA FLJ30006 fis, cl... 148 2e-34 AC006585_8(AC006585|pid:none) Arabidopsis thaliana chromosome 2 ... 148 2e-34 AY088156_1(AY088156|pid:none) Arabidopsis thaliana clone 42141 m... 147 3e-34 AK176351_1(AK176351|pid:none) Arabidopsis thaliana mRNA, complet... 147 3e-34 AY062719_1(AY062719|pid:none) Arabidopsis thaliana SUDD-like pro... 140 4e-32 AM270009_9(AM270009|pid:none) Aspergillus niger contig An02c0140... 135 2e-30 BX284753_9(BX284753|pid:none) Neurospora crassa DNA linkage grou... 134 3e-30 AM920427_1283(AM920427|pid:none) Penicillium chrysogenum Wiscons... 134 4e-30 AF013590_1(AF013590|pid:none) Emericella nidulans extragenic sup... 126 8e-28 CU633900_15(CU633900|pid:none) Podospora anserina genomic DNA ch... 117 5e-25 FN357334_5(FN357334|pid:none) Schistosoma mansoni genome sequenc... 109 8e-23 CP000496_948(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 109 1e-22 AF067624_5(AF067624|pid:none) Caenorhabditis elegans cosmid M01B... 106 7e-22 T33172(T33172)hypothetical protein M01B12.5 - Caenorhabditis ele... 106 7e-22 FM992688_1010(FM992688|pid:none) Candida dubliniensis CD36 chrom... 106 7e-22 CR382139_643(CR382139|pid:none) Debaryomyces hansenii strain CBS... 104 3e-21 AC123899_22(AC123899|pid:none) Medicago truncatula clone mth2-33... 102 1e-20 AE017356_177(AE017356|pid:none) Cryptococcus neoformans var. neo... 102 2e-20 BT069603_1(BT069603|pid:none) Zea mays full-length cDNA clone ZM... 98 2e-19 AC093543_31(AC093543|pid:none) Trypanosoma brucei chromosome 3 c... 85 3e-15 AM502247_40(AM502247|pid:none) Leishmania infantum chromosome 29. 82 2e-14 AM494966_25(AM494966|pid:none) Leishmania braziliensis chromosom... 79 1e-13 CU928178_421(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 78 3e-13 CR940347_344(CR940347|pid:none) Theileria annulata strain Ankara... 76 1e-12 BC077112_1(BC077112|pid:none) Danio rerio RIO kinase 3 (yeast), ... 76 1e-12 AM910996_474(AM910996|pid:none) Plasmodium knowlesi strain H chr... 75 2e-12 BC060398_1(BC060398|pid:none) Xenopus laevis hypothetical protei... 74 4e-12 CU928170_670(CU928170|pid:none) Kluyveromyces thermotolerans str... 74 4e-12 BT045996_1(BT045996|pid:none) Salmo salar clone ssal-rgf-538-310... 73 1e-11 BC075585_1(BC075585|pid:none) Xenopus tropicalis MGC89575 protei... 72 1e-11 BC077936_1(BC077936|pid:none) Xenopus laevis RIO kinase 3 (yeast... 72 2e-11 AK303938_1(AK303938|pid:none) Homo sapiens cDNA FLJ54233 complet... 71 3e-11 X96739_1(X96739|pid:none) S.cerevisiae RIO1 gene. 70 7e-11 AB169383_1(AB169383|pid:none) Macaca fascicularis testis cDNA, c... 70 9e-11 CR858252_1(CR858252|pid:none) Pongo abelii mRNA; cDNA DKFZp469N1... 70 9e-11 AK147074_1(AK147074|pid:none) Mus musculus 17 days pregnant adul... 69 1e-10 AK134327_1(AK134327|pid:none) Mus musculus 13 days embryo male t... 69 1e-10 AK011110_1(AK011110|pid:none) Mus musculus 13 days embryo liver ... 69 1e-10 (Q9DBU3) RecName: Full=Serine/threonine-protein kinase RIO3; ... 69 1e-10 (Q1RMT7) RecName: Full=Serine/threonine-protein kinase RIO3; ... 69 1e-10 AE014134_831(AE014134|pid:none) Drosophila melanogaster chromoso... 69 2e-10 AB169115_1(AB169115|pid:none) Macaca fascicularis testis cDNA, c... 68 3e-10 AK167309_1(AK167309|pid:none) Mus musculus 13 days pregnant adul... 67 6e-10 BC039729_1(BC039729|pid:none) Homo sapiens RIO kinase 3 (yeast),... 64 5e-09 AY596297_2196(AY596297|pid:none) Haloarcula marismortui ATCC 430... 57 5e-07 CP000780_2446(CP000780|pid:none) Candidatus Methanoregula boonei... 57 6e-07 AL590445_110(AL590445|pid:none) chromosome V of strain GB-M1 of ... 56 1e-06 BA000011_1203(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 55 2e-06 AE017261_252(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 54 5e-06 CP001365_2625(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 50 6e-05 CP001338_2651(CP001338|pid:none) Candidatus Methanosphaerula pal... 50 1e-04 (Q03021) RecName: Full=RIO-type serine/threonine-protein kinase ... 49 1e-04 BA000023_566(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 49 1e-04 AE004437_1712(AE004437|pid:none) Halobacterium sp. NRC-1, comple... 49 2e-04 AM180088_2481(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 49 2e-04 AM774415_1779(AM774415|pid:none) Halobacterium salinarum complet... 49 2e-04 (Q57886) RecName: Full=RIO-type serine/threonine-protein kinase ... 49 2e-04 CP001400_170(CP001400|pid:none) Sulfolobus islandicus M.14.25, c... 49 2e-04 AE017199_449(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, co... 48 4e-04 CP001399_203(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 47 5e-04 CP000866_1406(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 47 5e-04 CP000575_1088(CP000575|pid:none) Staphylothermus marinus F1, com... 47 6e-04 CP000254_2383(CP000254|pid:none) Methanospirillum hungatei JF-1,... 45 0.003 CR936257_654(CR936257|pid:none) Natronomonas pharaonis DSM 2160 ... 44 0.004 CP000852_489(CP000852|pid:none) Caldivirga maquilingensis IC-167... 44 0.004 AM114193_2910(AM114193|pid:none) Uncultured methanogenic archaeo... 44 0.004 BX950229_604(BX950229|pid:none) Methanococcus maripaludis strain... 44 0.005 CP000867_283(CP000867|pid:none) Methanococcus maripaludis C6, co... 44 0.005 CP000743_586(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 43 0.012 CP000099_2747(CP000099|pid:none) Methanosarcina barkeri str. Fus... 43 0.012 CP000505_509(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 43 0.012 AE008384_3081(AE008384|pid:none) Methanosarcina mazei strain Goe... 42 0.016 AE009439_514(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 42 0.027 CP000742_1455(CP000742|pid:none) Methanococcus vannielii SB, com... 41 0.035 CP000609_991(CP000609|pid:none) Methanococcus maripaludis C5, co... 41 0.035 CP001140_1084(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 41 0.046 CP000678_952(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 39 0.13 CP000504_683(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 37 0.50 CP000562_2485(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 37 0.66 (B2AS96) RecName: Full=Actin cytoskeleton-regulatory complex pro... 37 0.66 CP000504_765(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 37 0.86 CP000493_68(CP000493|pid:none) Hyperthermus butylicus DSM 5456, ... 36 1.1 AP006878_802(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 36 1.1 CP001014_1934(CP001014|pid:none) Thermoproteus neutrophilus V24S... 36 1.5 AK038690_1(AK038690|pid:none) Mus musculus adult male hypothalam... 36 1.5 CR382125_322(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 36 1.5 (P14873) RecName: Full=Microtubule-associated protein 1B; ... 36 1.5 CP000562_480(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 36 1.5 CP000561_1165(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 35 1.9 CP000509_3185(CP000509|pid:none) Nocardioides sp. JS614, complet... 35 1.9 CP001279_767(CP001279|pid:none) Nautilia profundicola AmH, compl... 35 1.9 CP000099_1732(CP000099|pid:none) Methanosarcina barkeri str. Fus... 35 1.9 AP006878_699(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 35 1.9 GM016639_278(GM016639|pid:none) Sequence 1469 from Patent EP1923... 35 1.9 AM432326_6(AM432326|pid:none) Vitis vinifera contig VV78X248522.... 35 1.9 CP000916_317(CP000916|pid:none) Thermotoga neapolitana DSM 4359,... 35 2.5 CP000013_73(CP000013|pid:none) Borrelia garinii PBi, complete ge... 35 3.3 CP000682_652(CP000682|pid:none) Metallosphaera sedula DSM 5348, ... 35 3.3 CP000300_865(CP000300|pid:none) Methanococcoides burtonii DSM 62... 35 3.3 AP009552_3056(AP009552|pid:none) Microcystis aeruginosa NIES-843... 35 3.3 CP001133_767(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ... 34 4.3 AM295250_2270(AM295250|pid:none) Staphylococcus carnosus subsp. ... 34 4.3 AE009439_1399(AE009439|pid:none) Methanopyrus kandleri AV19, com... 34 4.3 AE009439_1000(AE009439|pid:none) Methanopyrus kandleri AV19, com... 34 4.3 CP000021_692(CP000021|pid:none) Vibrio fischeri ES114 chromosome... 34 4.3 X64224_1(X64224|pid:none) M.musculus mRNA for Fc E receptor II (... 34 5.6 A75301(A75301) SudD-related protein - Deinococcus radiodurans (s... 34 5.6 AL590734_31(AL590734|pid:none) Leishmania major strain Friedlin ... 34 5.6 S67074_1(S67074|pid:none) Mus musculus low affinity IgE Fc recep... 34 5.6 CT005268_86(CT005268|pid:none) Leishmania major strain Friedlin,... 34 5.6 CR380959_518(CR380959|pid:none) Candida glabrata strain CBS138 c... 34 5.6 AP010656_680(AP010656|pid:none) Candidatus Azobacteroides pseudo... 34 5.6 AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte... 34 5.6 JC5497(JC5497;PC4334;S37561) claustrin - chicken &X67778_1(X677... 33 7.3 AF520782_1(AF520782|pid:none) Thermotoga neapolitana NADH:polysu... 33 7.3 CP000702_77(CP000702|pid:none) Thermotoga petrophila RKU-1, comp... 33 7.3 AJ871361_1(AJ871361|pid:none) Nyctotherus ovalis partial gene fo... 33 7.3 DQ645890_1(DQ645890|pid:none) Caenorhabditis elegans CIR-1 (cir-... 33 7.3 (Q498F0) RecName: Full=WD repeat-containing protein 44; &BC1002... 33 9.5 CP001230_1706(CP001230|pid:none) Persephonella marina EX-H1, com... 33 9.5 CU633459_34(CU633459|pid:none) Podospora anserina genomic DNA ch... 33 9.5 CP001185_1869(CP001185|pid:none) Thermosipho africanus TCF52B, c... 33 9.5 A69001(A69001) conserved hypothetical protein MTH1005 - Methanob... 33 9.5 AP008230_4010(AP008230|pid:none) Desulfitobacterium hafniense Y5... 33 9.5 AE016817_231(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 33 9.5 AB463119_1(AB463119|pid:none) Synthetic construct DNA, clone: pF... 33 9.5 BC108387_1(BC108387|pid:none) Mus musculus a disintegrin and met... 33 9.5
>BC079173_1(BC079173|pid:none) Rattus norvegicus RIO kinase 1 (yeast), mRNA (cDNA clone IMAGE:7130073), partial cds. Length = 560
Score = 172 bits (437), Expect = 8e-42 Identities = 101/247 (40%), Positives = 137/247 (55%), Gaps = 11/247 (4%) Frame = +2
Query: 2 YNMLYYKNQLYIIDVSQSVEHDHPHSLDFLRMDCSNVTDFFRKKEVNTMFIQELFEFITD 181 +NMLY+ +YIIDVSQSVEHDHPH+L+FLR DC+NV DFF K V M ++ELFEF+TD Sbjct: 326 FNMLYHGGDVYIIDVSQSVEHDHPHALEFLRKDCANVNDFFFKHAVAVMTVKELFEFVTD 385
Query: 182 LTITEDNIDQYLEKMLEKIQSR--GETTDEQKIQEEVFRNAYIPRTLDQIIDLDRDMEKI 355 +IT +NID YLEK +E R E T + + EEVF+ AYIPRTL+++ + +RD++ + Sbjct: 386 PSITLENIDAYLEKAMEIASQRTMEEKTSQDHVDEEVFKQAYIPRTLNEVKNYERDVDIM 445
Query: 356 ERGEGRD---------IFYQNLTGLSKDLQNIKSKNDLIXXXXXXXXXXXXXXXXXXXXX 508 R + D I YQ +TGL KDL ++ L+ Sbjct: 446 MRLKEEDMALNTQQDNILYQTVTGLKKDLSGVQKVPALLESEVKEETCFDSDDAGSSECS 505
Query: 509 XXXXXXXXXXXXXKIRKLVVIDPITKMEIRLEDMPKKDRKKFVKEMNKERRKTKIPKHIK 688 + DP D+ KK+RKK VKE +E+RK KIPKH+K Sbjct: 506 DTDPEEQGDQAGCQNH---TADP---------DVDKKERKKMVKEAQREKRKNKIPKHVK 553
Query: 689 K*LKREK 709 K K++K Sbjct: 554 KKKKKKK 560
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 775,255,768 Number of extensions: 12406638 Number of successful extensions: 43109 Number of sequences better than 10.0: 141 Number of HSP's gapped: 42863 Number of HSP's successfully gapped: 170 Length of query: 249 Length of database: 1,040,966,779 Length adjustment: 125 Effective length of query: 124 Effective length of database: 640,431,154 Effective search space: 79413463096 Effective search space used: 79413463096 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 31 (16.5 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |