Contig-U10026-1 |
Contig ID |
Contig-U10026-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1491 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
1714915 |
End point |
1713423 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
4 |
Number of EST |
5 |
Link to clone list |
U10026 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.18 |
Homology vs DNA |
Query= Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Contig-U10026-1Q.Seq.d (1491 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ398521) Dictyostelium discoideum cDNA clone:dds12c23, 3' ... 819 0.0 4 (BJ345826) Dictyostelium discoideum cDNA clone:dda28n22, 3' ... 720 0.0 2 (BJ412179) Dictyostelium discoideum cDNA clone:ddv7b07, 5' e... 585 0.0 2 (BJ436257) Dictyostelium discoideum cDNA clone:ddv30h14, 3' ... 745 0.0 2 (BJ417428) Dictyostelium discoideum cDNA clone:ddv30h14, 5' ... 860 0.0 2 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 5e-06 12 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 6e-05 20 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 1e-04 15 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 40 4e-04 11 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 44 6e-04 11 (AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 38 8e-04 10 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.002 17 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 42 0.002 8 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 48 0.003 17 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.003 14 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 46 0.003 9 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 44 0.003 11 (DE225361) Trifolium pratense DNA, clone:RCG17449. 40 0.004 2 (BJ435672) Dictyostelium discoideum cDNA clone:ddv27i19, 3' ... 42 0.005 2 (AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.005 15 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.008 10 (AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 40 0.010 8 (AC095634) Rattus norvegicus clone CH230-8J10, *** SEQUENCIN... 38 0.010 2 (AC141942) Rattus norvegicus clone CH230-450E20, WORKING DRA... 38 0.011 2 (AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 36 0.011 8 (AF024654) Dictyostelium discoideum hybrid histidine kinase ... 40 0.016 4 (AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 0.016 12 (FF508921) G709P522RF8.T0 Acorn worm normalized neurula pExp... 54 0.016 1 (AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.019 14 (AC074307) Mus musculus chromosome 16 clone RP23-6K21, WORKI... 40 0.019 6 (AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 36 0.020 13 (BJ442518) Dictyostelium discoideum cDNA clone:ddv50k02, 3' ... 52 0.021 2 (AU060598) Dictyostelium discoideum slug cDNA, clone SLK579. 42 0.022 2 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.024 13 (AC175049) Medicago truncatula chromosome 7 BAC clone mth2-9... 40 0.025 7 (AF241823) Dictyostelium discoideum prespore protein MF12 ge... 40 0.025 5 (AL844509) Plasmodium falciparum chromosome 13. 38 0.029 15 (AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.033 11 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.041 12 (AM285301) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.042 8 (AC149360) Phakopsora pachyrhizi clone JGIAFNA-41F18, comple... 40 0.042 2 (AL035476) Plasmodium falciparum MAL4P3. 36 0.055 14 (AU060623) Dictyostelium discoideum slug cDNA, clone SLK660. 42 0.059 2 (EB312331) CNSN01-F-076005-501 Normalized CNS library (juven... 46 0.059 2 (BX649370) Zebrafish DNA sequence from clone DKEY-97I11 in l... 52 0.062 1 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 40 0.082 18 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 46 0.091 8 (AC091627) Solanum demissum chromosome 11 clone PGEC513, com... 46 0.18 4 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 32 0.18 13 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 0.18 11 (AE017308) Mycoplasma mobile 163K complete genome. 34 0.18 19 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 36 0.19 10 (AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.20 12 (AX489410) Sequence 6710 from Patent WO02053728. 40 0.21 3 (CZ539818) SRAA-aad28a01.b1 Strongyloides ratti whole genome... 42 0.21 2 (AC090783) Homo sapiens chromosome 15 clone RP11-205B5 map 1... 36 0.21 7 (AC115368) Rattus norvegicus clone CH230-102L11, *** SEQUENC... 40 0.23 6 (BV604965) S217P60319RE11.T0 Noemie Pan troglodytes troglody... 50 0.24 1 (DU044151) 150919 Tomato HindIII BAC Library Solanum lycoper... 50 0.24 1 (AE017263) Mesoplasma florum L1 complete genome. 44 0.25 16 (AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 0.26 12 (AC186203) Canis Familiaris chromosome 26, clone XX-299G16, ... 40 0.26 6 (ER349178) 1092345447866 Global-Ocean-Sampling_GS-34-01-01-1... 40 0.26 2 (AL711334) Homo sapiens mRNA; EST DKFZp686B0182_r1 (from cl... 34 0.27 3 (AC193241) Pan troglodytes BAC clone CH251-169J19 from chrom... 40 0.27 6 (EK259684) 1095462101020 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.28 3 (AM467691) Vitis vinifera, whole genome shotgun sequence, co... 36 0.29 6 (AC162714) Bos taurus clone CH240-64E24, WORKING DRAFT SEQUE... 40 0.33 6 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 46 0.37 9 (AP001400) Homo sapiens genomic DNA, chromosome 18q22 clone:... 38 0.38 8 (EJ203128) 1092344315777 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.38 2 (AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.40 13 (AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 34 0.40 6 (AF362368) Dictyostelium discoideum histidine kinase DhkF (d... 42 0.40 4 (BX548009) Zebrafish DNA sequence from clone CH211-237K17 in... 36 0.41 7 (EJ909046) 1093018528247 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.41 2 (AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 38 0.41 14 (ET089256) QM0AAA13CH10RM1 CCL1 Citrus clementina genomic cl... 36 0.43 2 (AX346376) Sequence 1447 from Patent WO0200928. 34 0.43 5 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 36 0.52 19 (FE045106) LV_ES_RA04C17r Litopenaeus vannamei eyestalk cDNA... 34 0.58 3 (AC096717) Homo sapiens BAC clone RP11-10O3 from 4, complete... 34 0.60 10 (AC115581) Dictyostelium discoideum chromosome 2 map complem... 36 0.61 8 (BJ352056) Dictyostelium discoideum cDNA clone:dda45b14, 3' ... 34 0.62 3 (AL158819) Human DNA sequence from clone RP11-382F24 on chro... 40 0.65 5 (AF001352) Psychotria maingayi ribosomal protein S16 (rps16)... 36 0.69 2 (AL353193) Human DNA sequence from clone RP11-137F15 on chro... 36 0.69 3 (BE737256) 601305817F1 NIH_MGC_39 Homo sapiens cDNA clone IM... 36 0.69 2 (EV086289) BNSCS5CT_UP_119_H07_30MAY2007_049 Brassica napus ... 34 0.69 4 (AC180714) Strongylocentrotus purpuratus clone R3-3085A22, W... 36 0.72 9 (CR450774) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 0.72 6 (AC128372) Rattus norvegicus clone CH230-164C7, *** SEQUENCI... 38 0.73 9 (AC165331) Mus musculus chromosome 3 clone wi1-1755M24 map 3... 48 0.77 2 (CU571186) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.78 7 (AC226416) Oryza minuta clone OM__Ba0162H19, *** SEQUENCING ... 34 0.79 7 (AC136506) Medicago truncatula clone mth2-33c8, complete seq... 38 0.79 6 (CU459059) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 0.81 7 (AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 34 0.81 8 (BJ369646) Dictyostelium discoideum cDNA clone:ddc51d08, 5' ... 38 0.86 2 (AC176111) Strongylocentrotus purpuratus clone R3-3023G8, WO... 36 0.86 10
>(BJ398521) Dictyostelium discoideum cDNA clone:dds12c23, 3' end, single read. Length = 736
Score = 819 bits (413), Expect(4) = 0.0 Identities = 413/413 (100%) Strand = Plus / Minus
Query: 779 ttatttgtcaaactaaagaagaatgggaagaattaattaaaaaatatgaaccatttcatg 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 645 ttatttgtcaaactaaagaagaatgggaagaattaattaaaaaatatgaaccatttcatg 586
Query: 839 aggaaatcaataaaaatggtgaagttgaagaggttaaagaagaatctgatgaaaaaacgt 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 aggaaatcaataaaaatggtgaagttgaagaggttaaagaagaatctgatgaaaaaacgt 526
Query: 899 tatgtataaatttaaaggatgtattaccacaagttttgagtaaactatcatcaataaaga 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 tatgtataaatttaaaggatgtattaccacaagttttgagtaaactatcatcaataaaga 466
Query: 959 gaaagagaactatgtttactcaagttccaatcggtagttcaccaattgatatgaatgaat 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 465 gaaagagaactatgtttactcaagttccaatcggtagttcaccaattgatatgaatgaat 406
Query: 1019 caaaacaatggaaatcaatgcgtttattatctcaaaatcttaaaaagaaagaacaagaag 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405 caaaacaatggaaatcaatgcgtttattatctcaaaatcttaaaaagaaagaacaagaag 346
Query: 1079 agtttatggaaattcaacaacatcaacaacaacaattagaagctgatccttacaatagac 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 345 agtttatggaaattcaacaacatcaacaacaacaattagaagctgatccttacaatagac 286
Query: 1139 caagatcaagtagagttagaacaaatttattttttaatgatagtggtgtttta 1191 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 285 caagatcaagtagagttagaacaaatttattttttaatgatagtggtgtttta 233
Score = 232 bits (117), Expect(4) = 0.0 Identities = 117/117 (100%) Strand = Plus / Minus
Query: 1269 cggtggtgataacatttataacaatggcagagcttctaaaagtaacaggtataataaatc 1328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 155 cggtggtgataacatttataacaatggcagagcttctaaaagtaacaggtataataaatc 96
Query: 1329 aattgaaccaacagttcatctaagtagaagtggtagaagaattataactgcaggtct 1385 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95 aattgaaccaacagttcatctaagtagaagtggtagaagaattataactgcaggtct 39
Score = 73.8 bits (37), Expect(4) = 0.0 Identities = 37/37 (100%) Strand = Plus / Minus
Query: 1388 atcaacaaggtagaccagtttcagcaaatcaattatc 1424 ||||||||||||||||||||||||||||||||||||| Sbjct: 37 atcaacaaggtagaccagtttcagcaaatcaattatc 1
Score = 50.1 bits (25), Expect(4) = 0.0 Identities = 25/25 (100%) Strand = Plus / Minus
Query: 689 caatgccagcaggttcaaatggtat 713 ||||||||||||||||||||||||| Sbjct: 736 caatgccagcaggttcaaatggtat 712
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,848,721,992 Number of extensions: 126634227 Number of successful extensions: 12640462 Number of sequences better than 10.0: 613 Length of query: 1491 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1467 Effective length of database: 97,308,875,965 Effective search space: 142752121040655 Effective search space used: 142752121040655 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.27 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |