Contig-U10026-1
Contig ID Contig-U10026-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Contig-U10026-1Q.Seq.d
AGACGAAAATAAAAAAAGAGAATGAAAAGTGCTGATGTTAGTGCCAGTAC
TCTAATAGCAACACCACCTGGAACTCCAACAACTAATCCAACAACTACTA
CAACTACATCAACCCCAACAACTCCTGTTTTAAGAGGGTCTGTTTCAACT
CCAAAAACTAAAGTTGAAGATGAAATTATAAGATCAATGTGGGAAACTCC
TGCAATTTATCAATATTTAACATTTTTTAAACAAACATTAGGTGTCAGAG
TTATATCAACTGATGATTTAGAAAGTTCTTTATTAAATCCAAAAAATAAT
ATAAAACTTTTAGGTGATATTTTCATACCTTTATTAAAAGAATTATTACC
AGTTACAAAAGCAAGAACTTTAAATCATACAACGTGGGAATTATTTTTAA
AACAAGAATTAAATAAAGAGAATAGTTTTTTCAATTGTTTTGAAGAGAAT
CCATTCAATGAAGATAGTTCACTCTTTTCTGAAGTTTCATTAAAGAATAG
AATTTTATTATTAAAATCAGTTTGTGATTGGAATTTATCAAAATCTCCAA
ATATTTTAGAGAGTGTTAAACAAATCATAGCTGCTGATGAAACTGATAAA
TTGAGAAATTTACCAATGGGTATTTTAAATGATCAAAAAGAATTTTATTG
GTATTTTGGTGATCATAGACTTTATAAAGAAACTTTAACAATGCCAGCAG
GTTCAAATGGTATTAAAAAGAGATCAAAAAATAATAATAACAATGGTAAT
ATAATTGATGAAAAAGGTAAATGGGAAATTATTTGTCAAACTAAAGAAGA
ATGGGAAGAATTAATTAAAAAATATGAACCATTTCATGAGGAAATCAATA
AAAATGGTGAAGTTGAAGAGGTTAAAGAAGAATCTGATGAAAAAACGTTA
TGTATAAATTTAAAGGATGTATTACCACAAGTTTTGAGTAAACTATCATC
AATAAAGAGAAAGAGAACTATGTTTACTCAAGTTCCAATCGGTAGTTCAC
CAATTGATATGAATGAATCAAAACAATGGAAATCAATGCGTTTATTATCT
CAAAATCTTAAAAAGAAAGAACAAGAAGAGTTTATGGAAATTCAACAACA
TCAACAACAACAATTAGAAGCTGATCCTTACAATAGACCAAGATCAAGTA
GAGTTAGAACAAATTTATTTTTTAATGATAGTGGTGTTTTAAATGGTGGT
GGTGGTATTGGTGGTGGTGATGGTGATAATGATGATAATGATAATGATGA
TGAAGATGACGATGATGACGGTGGTGATAACATTTATAACAATGGCAGAG
CTTCTAAAAGTAACAGGTATAATAAATCAATTGAACCAACAGTTCATCTA
AGTAGAAGTGGTAGAAGAATTATAACTGCAGGTCTTGATCAACAAGGTAG
ACCAGTTTCAGCAAATCAATTATCTGTAGACACAAAAAAAAAATTAATTA
AGATTTTAATGATCATGAAAATGTAAATAATAATAATAATA

Gap no gap
Contig length 1491
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1714915
End point 1713423
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U10026
List of clone(s)

est1=VFO852F,1,557
est2=VFD325F,504,1073
est3=SFF590Z,689,1424
est4=VFO852Z,795,1378
est5=AFN887Z,829,1492
Translated Amino Acid sequence
rrk*KKRMKSADVSASTLIATPPGTPTTNPTTTTTTSTPTTPVLRGSVSTPKTKVEDEII
RSMWETPAIYQYLTFFKQTLGVRVISTDDLESSLLNPKNNIKLLGDIFIPLLKELLPVTK
ARTLNHTTWELFLKQELNKENSFFNCFEENPFNEDSSLFSEVSLKNRILLLKSVCDWNLS
KSPNILESVKQIIAADETDKLRNLPMGILNDQKEFYWYFGDHRLYKETLTMPAGSNGIKK
RSKNNNNNGNIIDEKGKWEIICQTKEEWEELIKKYEPFHEEINKNGEVEEVKEESDEKTL
CINLKDVLPQVLSKLSSIKRKRTMFTQVPIGSSPIDMNESKQWKSMRLLSQNLKKKEQEE
FMEIQQHQQQQLEADPYNRPRSSRVRTNLFFNDSGVLNGGGGIGGGDGDNDDNDNDDEDD
DDDGGDNIYNNGRASKSNRYNKSIEPTVHLSRSGRRIITAGLDQQGRPVSANQLSVDTKK
KLIKILMIMKM*iiiii


Translated Amino Acid sequence (All Frames)
Frame A:
rrk*KKRMKSADVSASTLIATPPGTPTTNPTTTTTTSTPTTPVLRGSVSTPKTKVEDEII
RSMWETPAIYQYLTFFKQTLGVRVISTDDLESSLLNPKNNIKLLGDIFIPLLKELLPVTK
ARTLNHTTWELFLKQELNKENSFFNCFEENPFNEDSSLFSEVSLKNRILLLKSVCDWNLS
KSPNILESVKQIIAADETDKLRNLPMGILNDQKEFYWYFGDHRLYKETLTMPAGSNGIKK
RSKNNNNNGNIIDEKGKWEIICQTKEEWEELIKKYEPFHEEINKNGEVEEVKEESDEKTL
CINLKDVLPQVLSKLSSIKRKRTMFTQVPIGSSPIDMNESKQWKSMRLLSQNLKKKEQEE
FMEIQQHQQQQLEADPYNRPRSSRVRTNLFFNDSGVLNGGGGIGGGDGDNDDNDNDDEDD
DDDGGDNIYNNGRASKSNRYNKSIEPTVHLSRSGRRIITAGLDQQGRPVSANQLSVDTKK
KLIKILMIMKM*iiiii


Frame B:
denkkre*kvlmlvpvl**qhhlelqqliqqllqlhqpqqllf*eglfqlqklklkmkl*
dqcgkllqfini*hflnkh*vselyqlmi*kvly*iqkii*nf*vifsyly*knyyqlqk
qel*iiqrgnyf*nkn*ikrivfsivlkrihsmkivhsflkfh*riefyy*nqfvigiyq
nlqif*rvlnks*llmklin*eiyqwvf*mikknfigilviidfikkl*qcqqvqmvlkr
dqkiiitmvi*lmkkvngklfvklkkngkn*lknmnhfmrksikmvklkrlkknlmkkry
v*i*rmyyhkf*vnyhq*rerelcllkfqsvvhqli*mnqnngnqcvyylkilkrknkks
lwkfnninnnn*kliltidqdqveleqiyflmivvf*mvvvvlvvvmvimmimimmmkmt
mmtvvitfitmaellkvtgiinqlnqqfi*vevveel*lqvlinkvdqfqqinyl*tqkk
n*lrf**s*kck****


Frame C:
tkikkenekc*c*cqysnsnttwnsnn*snnyynyinpnnscfkrvcfnskn*s*r*nyk
invgnscnlsifnif*tnircqsyin**frkffikskk*yktfr*yfhtfikriitsyks
knfksynvgiifktrik*re*ffqlf*resiq*r*ftlf*sfike*nfiikisl*lefik
iskyfrec*tnhsc**n**iekftngyfk*skrillvfw*s*tl*rnfnnasrfkwy*ke
ikk***qw*yn**kr*mgnylsn*rrmgrin*ki*tis*gnq*kw*s*rg*rri**knvm
ykfkgcittsfe*tiinkekenyvysssnr*ftn*ye*iktmeinafiisks*kertrrv
ygnsttstttirs*slq*tkik*s*nkfif***wcfkwwwwywww*w**********r*r
**rw**hl*qwqsf*k*qv**in*tnsssk*kw*knyncrs*str*tsfsksiicrhkkk
in*dfndhenvnnnnn


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10026-1 (Contig-U10026-1Q)
/CSM_Contig/Contig-U10026-1Q.Seq.d
(1491 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Conti... 2305 0.0
Contig-U12510-1 (Contig-U12510-1Q) /CSM_Contig/Conti... 52 2e-06
Contig-U14907-1 (Contig-U14907-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U12231-1 (Contig-U12231-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U12079-1 (Contig-U12079-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U12054-1 (Contig-U12054-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U14628-1 (Contig-U14628-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U01709-1 (Contig-U01709-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U12605-1 (Contig-U12605-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U12303-1 (Contig-U12303-1Q) /CSM_Contig/Conti... 36 0.11

>Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Contig-U10026-1Q.Seq.d
Length = 1491

Score = 2305 bits (1163), Expect = 0.0
Identities = 1163/1163 (100%)
Strand = Plus / Plus


Query: 18 gagaatgaaaagtgctgatgttagtgccagtactctaatagcaacaccacctggaactcc 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 gagaatgaaaagtgctgatgttagtgccagtactctaatagcaacaccacctggaactcc 77


Query: 78 aacaactaatccaacaactactacaactacatcaaccccaacaactcctgttttaagagg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 aacaactaatccaacaactactacaactacatcaaccccaacaactcctgttttaagagg 137


Query: 138 gtctgtttcaactccaaaaactaaagttgaagatgaaattataagatcaatgtgggaaac 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gtctgtttcaactccaaaaactaaagttgaagatgaaattataagatcaatgtgggaaac 197


Query: 198 tcctgcaatttatcaatatttaacattttttaaacaaacattaggtgtcagagttatatc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcctgcaatttatcaatatttaacattttttaaacaaacattaggtgtcagagttatatc 257


Query: 258 aactgatgatttagaaagttctttattaaatccaaaaaataatataaaacttttaggtga 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aactgatgatttagaaagttctttattaaatccaaaaaataatataaaacttttaggtga 317


Query: 318 tattttcatacctttattaaaagaattattaccagttacaaaagcaagaactttaaatca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tattttcatacctttattaaaagaattattaccagttacaaaagcaagaactttaaatca 377


Query: 378 tacaacgtgggaattatttttaaaacaagaattaaataaagagaatagttttttcaattg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tacaacgtgggaattatttttaaaacaagaattaaataaagagaatagttttttcaattg 437


Query: 438 ttttgaagagaatccattcaatgaagatagttcactcttttctgaagtttcattaaagaa 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttttgaagagaatccattcaatgaagatagttcactcttttctgaagtttcattaaagaa 497


Query: 498 tagaattttattattaaaatcagtttgtgattggaatttatcaaaatctccaaatatttt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tagaattttattattaaaatcagtttgtgattggaatttatcaaaatctccaaatatttt 557


Query: 558 agagagtgttaaacaaatcatagctgctgatgaaactgataaattgagaaatttaccaat 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agagagtgttaaacaaatcatagctgctgatgaaactgataaattgagaaatttaccaat 617


Query: 618 gggtattttaaatgatcaaaaagaattttattggtattttggtgatcatagactttataa 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gggtattttaaatgatcaaaaagaattttattggtattttggtgatcatagactttataa 677


Query: 678 agaaactttaacaatgccagcaggttcaaatggtattaaaaagagatcaaaaaataataa 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaaactttaacaatgccagcaggttcaaatggtattaaaaagagatcaaaaaataataa 737


Query: 738 taacaatggtaatataattgatgaaaaaggtaaatgggaaattatttgtcaaactaaaga 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 taacaatggtaatataattgatgaaaaaggtaaatgggaaattatttgtcaaactaaaga 797


Query: 798 agaatgggaagaattaattaaaaaatatgaaccatttcatgaggaaatcaataaaaatgg 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 agaatgggaagaattaattaaaaaatatgaaccatttcatgaggaaatcaataaaaatgg 857


Query: 858 tgaagttgaagaggttaaagaagaatctgatgaaaaaacgttatgtataaatttaaagga 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tgaagttgaagaggttaaagaagaatctgatgaaaaaacgttatgtataaatttaaagga 917


Query: 918 tgtattaccacaagttttgagtaaactatcatcaataaagagaaagagaactatgtttac 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tgtattaccacaagttttgagtaaactatcatcaataaagagaaagagaactatgtttac 977


Query: 978 tcaagttccaatcggtagttcaccaattgatatgaatgaatcaaaacaatggaaatcaat 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 tcaagttccaatcggtagttcaccaattgatatgaatgaatcaaaacaatggaaatcaat 1037


Query: 1038 gcgtttattatctcaaaatcttaaaaagaaagaacaagaagagtttatggaaattcaaca 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 gcgtttattatctcaaaatcttaaaaagaaagaacaagaagagtttatggaaattcaaca 1097


Query: 1098 acatcaacaacaacaattagaagctgatccttacaatagaccaagatcaagtagagttag 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 acatcaacaacaacaattagaagctgatccttacaatagaccaagatcaagtagagttag 1157


Query: 1158 aacaaatttattttttaatgata 1180
|||||||||||||||||||||||
Sbjct: 1158 aacaaatttattttttaatgata 1180


Score = 383 bits (193), Expect = e-106
Identities = 213/223 (95%)
Strand = Plus / Plus


Query: 1269 cggtggtgataacatttataacaatggcagagcttctaaaagtaacaggtataataaatc 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 cggtggtgataacatttataacaatggcagagcttctaaaagtaacaggtataataaatc 1328


Query: 1329 aattgaaccaacagttcatctaagtagaagtggtagaagaattataactgcaggtcttga 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 aattgaaccaacagttcatctaagtagaagtggtagaagaattataactgcaggtcttga 1388


Query: 1389 tcaacaaggtagaccagtttcagcaaatcaattatctgtagacacnnnnnnnnnnttaat 1448
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1389 tcaacaaggtagaccagtttcagcaaatcaattatctgtagacacaaaaaaaaaattaat 1448


Query: 1449 taagattttaatgatcatgaaaatgtaaataataataataata 1491
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1449 taagattttaatgatcatgaaaatgtaaataataataataata 1491


>Contig-U12510-1 (Contig-U12510-1Q) /CSM_Contig/Contig-U12510-1Q.Seq.d
Length = 1340

Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1088 aaattcaacaacatcaacaacaacaa 1113
||||||||||||||||||||||||||
Sbjct: 996 aaattcaacaacatcaacaacaacaa 1021


Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1476 aataataataataata 1491
||||||||||||||||
Sbjct: 68 aataataataataata 83


Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1476 aataataataataata 1491
||||||||||||||||
Sbjct: 59 aataataataataata 74


Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1476 aataataataataata 1491
||||||||||||||||
Sbjct: 62 aataataataataata 77


Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1476 aataataataataata 1491
||||||||||||||||
Sbjct: 56 aataataataataata 71


Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1476 aataataataataata 1491
||||||||||||||||
Sbjct: 71 aataataataataata 86


Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1476 aataataataataata 1491
||||||||||||||||
Sbjct: 53 aataataataataata 68


Score = 32.2 bits (16), Expect = 1.7
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1476 aataataataataata 1491
||||||||||||||||
Sbjct: 65 aataataataataata 80


Score = 30.2 bits (15), Expect = 6.5
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 1094 aacaacatcaacaacaaca 1112
||||||||||||| |||||
Sbjct: 888 aacaacatcaacatcaaca 906


Score = 30.2 bits (15), Expect = 6.5
Identities = 24/27 (88%)
Strand = Plus / Plus


Query: 1088 aaattcaacaacatcaacaacaacaat 1114
||||||||||||| | ||||| |||||
Sbjct: 498 aaattcaacaacaaccacaaccacaat 524


Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 730 aataataataacaat 744
|||||||||||||||
Sbjct: 77 aataataataacaat 91


>Contig-U14907-1 (Contig-U14907-1Q) /CSM_Contig/Contig-U14907-1Q.Seq.d
Length = 422

Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 1093 caacaacatcaacaacaacaattagaag 1120
|||||||| |||||||||||||||||||
Sbjct: 226 caacaacaacaacaacaacaattagaag 253


Score = 42.1 bits (21), Expect = 0.002
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1089 aattcaacaacatcaacaacaacaa 1113
|||||||||||| ||||||||||||
Sbjct: 204 aattcaacaacaacaacaacaacaa 228


Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1093 caacaacatcaacaacaacaa 1113
|||||||| ||||||||||||
Sbjct: 220 caacaacaacaacaacaacaa 240


Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1093 caacaacatcaacaacaacaa 1113
|||||||| ||||||||||||
Sbjct: 214 caacaacaacaacaacaacaa 234


Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1093 caacaacatcaacaacaacaa 1113
|||||||| ||||||||||||
Sbjct: 223 caacaacaacaacaacaacaa 243


Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1093 caacaacatcaacaacaacaa 1113
|||||||| ||||||||||||
Sbjct: 217 caacaacaacaacaacaacaa 237


Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1093 caacaacatcaacaacaacaa 1113
|||||||| ||||||||||||
Sbjct: 211 caacaacaacaacaacaacaa 231


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,576
Number of Sequences: 6905
Number of extensions: 69576
Number of successful extensions: 21294
Number of sequences better than 10.0: 2445
length of query: 1491
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1475
effective length of database: 5,564,391
effective search space: 8207476725
effective search space used: 8207476725
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Contig-U10026-1Q.Seq.d
(1491 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ398521) Dictyostelium discoideum cDNA clone:dds12c23, 3' ... 819 0.0 4
(BJ345826) Dictyostelium discoideum cDNA clone:dda28n22, 3' ... 720 0.0 2
(BJ412179) Dictyostelium discoideum cDNA clone:ddv7b07, 5' e... 585 0.0 2
(BJ436257) Dictyostelium discoideum cDNA clone:ddv30h14, 3' ... 745 0.0 2
(BJ417428) Dictyostelium discoideum cDNA clone:ddv30h14, 5' ... 860 0.0 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 5e-06 12
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 6e-05 20
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 1e-04 15
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 40 4e-04 11
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 44 6e-04 11
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 38 8e-04 10
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.002 17
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 42 0.002 8
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 48 0.003 17
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.003 14
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 46 0.003 9
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 44 0.003 11
(DE225361) Trifolium pratense DNA, clone:RCG17449. 40 0.004 2
(BJ435672) Dictyostelium discoideum cDNA clone:ddv27i19, 3' ... 42 0.005 2
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.005 15
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.008 10
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 40 0.010 8
(AC095634) Rattus norvegicus clone CH230-8J10, *** SEQUENCIN... 38 0.010 2
(AC141942) Rattus norvegicus clone CH230-450E20, WORKING DRA... 38 0.011 2
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 36 0.011 8
(AF024654) Dictyostelium discoideum hybrid histidine kinase ... 40 0.016 4
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 0.016 12
(FF508921) G709P522RF8.T0 Acorn worm normalized neurula pExp... 54 0.016 1
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.019 14
(AC074307) Mus musculus chromosome 16 clone RP23-6K21, WORKI... 40 0.019 6
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 36 0.020 13
(BJ442518) Dictyostelium discoideum cDNA clone:ddv50k02, 3' ... 52 0.021 2
(AU060598) Dictyostelium discoideum slug cDNA, clone SLK579. 42 0.022 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.024 13
(AC175049) Medicago truncatula chromosome 7 BAC clone mth2-9... 40 0.025 7
(AF241823) Dictyostelium discoideum prespore protein MF12 ge... 40 0.025 5
(AL844509) Plasmodium falciparum chromosome 13. 38 0.029 15
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.033 11
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.041 12
(AM285301) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.042 8
(AC149360) Phakopsora pachyrhizi clone JGIAFNA-41F18, comple... 40 0.042 2
(AL035476) Plasmodium falciparum MAL4P3. 36 0.055 14
(AU060623) Dictyostelium discoideum slug cDNA, clone SLK660. 42 0.059 2
(EB312331) CNSN01-F-076005-501 Normalized CNS library (juven... 46 0.059 2
(BX649370) Zebrafish DNA sequence from clone DKEY-97I11 in l... 52 0.062 1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 40 0.082 18
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 46 0.091 8
(AC091627) Solanum demissum chromosome 11 clone PGEC513, com... 46 0.18 4
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 32 0.18 13
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 0.18 11
(AE017308) Mycoplasma mobile 163K complete genome. 34 0.18 19
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 36 0.19 10
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.20 12
(AX489410) Sequence 6710 from Patent WO02053728. 40 0.21 3
(CZ539818) SRAA-aad28a01.b1 Strongyloides ratti whole genome... 42 0.21 2
(AC090783) Homo sapiens chromosome 15 clone RP11-205B5 map 1... 36 0.21 7
(AC115368) Rattus norvegicus clone CH230-102L11, *** SEQUENC... 40 0.23 6
(BV604965) S217P60319RE11.T0 Noemie Pan troglodytes troglody... 50 0.24 1
(DU044151) 150919 Tomato HindIII BAC Library Solanum lycoper... 50 0.24 1
(AE017263) Mesoplasma florum L1 complete genome. 44 0.25 16
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 0.26 12
(AC186203) Canis Familiaris chromosome 26, clone XX-299G16, ... 40 0.26 6
(ER349178) 1092345447866 Global-Ocean-Sampling_GS-34-01-01-1... 40 0.26 2
(AL711334) Homo sapiens mRNA; EST DKFZp686B0182_r1 (from cl... 34 0.27 3
(AC193241) Pan troglodytes BAC clone CH251-169J19 from chrom... 40 0.27 6
(EK259684) 1095462101020 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.28 3
(AM467691) Vitis vinifera, whole genome shotgun sequence, co... 36 0.29 6
(AC162714) Bos taurus clone CH240-64E24, WORKING DRAFT SEQUE... 40 0.33 6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 46 0.37 9
(AP001400) Homo sapiens genomic DNA, chromosome 18q22 clone:... 38 0.38 8
(EJ203128) 1092344315777 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.38 2
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.40 13
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 34 0.40 6
(AF362368) Dictyostelium discoideum histidine kinase DhkF (d... 42 0.40 4
(BX548009) Zebrafish DNA sequence from clone CH211-237K17 in... 36 0.41 7
(EJ909046) 1093018528247 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.41 2
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 38 0.41 14
(ET089256) QM0AAA13CH10RM1 CCL1 Citrus clementina genomic cl... 36 0.43 2
(AX346376) Sequence 1447 from Patent WO0200928. 34 0.43 5
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 36 0.52 19
(FE045106) LV_ES_RA04C17r Litopenaeus vannamei eyestalk cDNA... 34 0.58 3
(AC096717) Homo sapiens BAC clone RP11-10O3 from 4, complete... 34 0.60 10
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 36 0.61 8
(BJ352056) Dictyostelium discoideum cDNA clone:dda45b14, 3' ... 34 0.62 3
(AL158819) Human DNA sequence from clone RP11-382F24 on chro... 40 0.65 5
(AF001352) Psychotria maingayi ribosomal protein S16 (rps16)... 36 0.69 2
(AL353193) Human DNA sequence from clone RP11-137F15 on chro... 36 0.69 3
(BE737256) 601305817F1 NIH_MGC_39 Homo sapiens cDNA clone IM... 36 0.69 2
(EV086289) BNSCS5CT_UP_119_H07_30MAY2007_049 Brassica napus ... 34 0.69 4
(AC180714) Strongylocentrotus purpuratus clone R3-3085A22, W... 36 0.72 9
(CR450774) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 0.72 6
(AC128372) Rattus norvegicus clone CH230-164C7, *** SEQUENCI... 38 0.73 9
(AC165331) Mus musculus chromosome 3 clone wi1-1755M24 map 3... 48 0.77 2
(CU571186) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.78 7
(AC226416) Oryza minuta clone OM__Ba0162H19, *** SEQUENCING ... 34 0.79 7
(AC136506) Medicago truncatula clone mth2-33c8, complete seq... 38 0.79 6
(CU459059) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 0.81 7
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 34 0.81 8
(BJ369646) Dictyostelium discoideum cDNA clone:ddc51d08, 5' ... 38 0.86 2
(AC176111) Strongylocentrotus purpuratus clone R3-3023G8, WO... 36 0.86 10

>(BJ398521) Dictyostelium discoideum cDNA clone:dds12c23, 3' end,
single read.
Length = 736

Score = 819 bits (413), Expect(4) = 0.0
Identities = 413/413 (100%)
Strand = Plus / Minus


Query: 779 ttatttgtcaaactaaagaagaatgggaagaattaattaaaaaatatgaaccatttcatg 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttatttgtcaaactaaagaagaatgggaagaattaattaaaaaatatgaaccatttcatg 586


Query: 839 aggaaatcaataaaaatggtgaagttgaagaggttaaagaagaatctgatgaaaaaacgt 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aggaaatcaataaaaatggtgaagttgaagaggttaaagaagaatctgatgaaaaaacgt 526


Query: 899 tatgtataaatttaaaggatgtattaccacaagttttgagtaaactatcatcaataaaga 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tatgtataaatttaaaggatgtattaccacaagttttgagtaaactatcatcaataaaga 466


Query: 959 gaaagagaactatgtttactcaagttccaatcggtagttcaccaattgatatgaatgaat 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaaagagaactatgtttactcaagttccaatcggtagttcaccaattgatatgaatgaat 406


Query: 1019 caaaacaatggaaatcaatgcgtttattatctcaaaatcttaaaaagaaagaacaagaag 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 caaaacaatggaaatcaatgcgtttattatctcaaaatcttaaaaagaaagaacaagaag 346


Query: 1079 agtttatggaaattcaacaacatcaacaacaacaattagaagctgatccttacaatagac 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agtttatggaaattcaacaacatcaacaacaacaattagaagctgatccttacaatagac 286


Query: 1139 caagatcaagtagagttagaacaaatttattttttaatgatagtggtgtttta 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 caagatcaagtagagttagaacaaatttattttttaatgatagtggtgtttta 233

Score = 232 bits (117), Expect(4) = 0.0
Identities = 117/117 (100%)
Strand = Plus / Minus


Query: 1269 cggtggtgataacatttataacaatggcagagcttctaaaagtaacaggtataataaatc 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 cggtggtgataacatttataacaatggcagagcttctaaaagtaacaggtataataaatc 96


Query: 1329 aattgaaccaacagttcatctaagtagaagtggtagaagaattataactgcaggtct 1385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aattgaaccaacagttcatctaagtagaagtggtagaagaattataactgcaggtct 39

Score = 73.8 bits (37), Expect(4) = 0.0
Identities = 37/37 (100%)
Strand = Plus / Minus


Query: 1388 atcaacaaggtagaccagtttcagcaaatcaattatc 1424
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 atcaacaaggtagaccagtttcagcaaatcaattatc 1

Score = 50.1 bits (25), Expect(4) = 0.0
Identities = 25/25 (100%)
Strand = Plus / Minus


Query: 689 caatgccagcaggttcaaatggtat 713
|||||||||||||||||||||||||
Sbjct: 736 caatgccagcaggttcaaatggtat 712

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,848,721,992
Number of extensions: 126634227
Number of successful extensions: 12640462
Number of sequences better than 10.0: 613
Length of query: 1491
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1467
Effective length of database: 97,308,875,965
Effective search space: 142752121040655
Effective search space used: 142752121040655
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Contig-U10026-1Q.Seq.d
(1491 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE014296_1213(AE014296|pid:none) Drosophila melanogaster chromos... 74 2e-11
AM480194_3(AM480194|pid:none) Vitis vinifera contig VV78X010452.... 61 1e-07
EU850803_1(EU850803|pid:none) Gallus gallus cat eye syndrome chr... 58 8e-07
AC108906_11(AC108906|pid:none) Oryza sativa chromosome 3 BAC OSJ... 55 5e-06
AB234882_1(AB234882|pid:none) Trifolium pratense mRNA for aminoa... 53 2e-05
AM269974_21(AM269974|pid:none) Aspergillus niger contig An01c027... 43 0.034
AC068602_9(AC068602|pid:none) Genomic sequence for Arabidopsis t... 39 0.37
AM920437_554(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 39 0.64
BC023491_1(BC023491|pid:none) Mus musculus predicted gene, ENSMU... 39 0.64
CU179680_253(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo... 38 0.83
AF087160_1(AF087160|pid:none) Homo sapiens DNA topoisomerase II ... 35 5.4
AB208879_1(AB208879|pid:none) Homo sapiens mRNA for DNA topoisom... 35 5.4
CR857392_1(CR857392|pid:none) Pongo abelii mRNA; cDNA DKFZp469C0... 35 5.4
(Q64511) RecName: Full=DNA topoisomerase 2-beta; EC=5.9... 35 5.4
A39242(S26730;A39242;S10710;S33970;S30191;S41641;S30190)DNA topo... 35 5.4
Z15115_1(Z15115|pid:none) H.sapiens TOP2 mRNA for DNA topoisomer... 35 5.4
AK296510_1(AK296510|pid:none) Homo sapiens cDNA FLJ55300 partial... 35 5.4
BC156330_1(BC156330|pid:none) Synthetic construct Homo sapiens c... 35 5.4
(Q64399) RecName: Full=DNA topoisomerase 2-beta; EC=5.9... 35 5.4
(Q02880) RecName: Full=DNA topoisomerase 2-beta; EC=5.9... 35 5.4
BC097834_1(BC097834|pid:none) Xenopus laevis hypothetical protei... 35 5.4
BC121340_1(BC121340|pid:none) Xenopus tropicalis hypothetical pr... 35 5.4

>AE014296_1213(AE014296|pid:none) Drosophila melanogaster chromosome
3L, complete sequence.
&AE014296_1214(AE014296|pid:none)
&AY060386_1(AY060386|pid:none)
&FJ631922_1(FJ631922|pid:none)
&FJ636649_1(FJ636649|pid:none)
Length = 342

Score = 73.6 bits (179), Expect = 2e-11
Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)
Frame = +1

Query: 178 IRSMWETPAIYQYLTFFKQTLGVRVISTDDLESSLLNP----KNNIKLLGDIFIPLLKEL 345
I+S WE P I + + F + I +DLES+LL+ ++ + L+ ++ + LLK
Sbjct: 11 IQSWWEIPCISHFCSLFSSAFDLPDIDIEDLESALLSDGTSDEDQVALVPELIVRLLKGC 70

Query: 346 LPV-TKARTLNHTTWELFLKQELNKXXXXXXXXXXXXXXXDSSLFSEVSLKNRILLLKSV 522
+ T A+ + H+ +++FL++ L + D F + ++ R+ +L +
Sbjct: 71 DALQTVAKEITHSNYQMFLRRFLRQQCRLHQTENHFDTDID---FQSLPVRKRLHILHDL 127

Query: 523 CDWNLSKSPNILESVKQIIAADETDKLRNLPMGILNDQKEFYWYFGDHRLYKETLTM--P 696
C + L V+ I++ E D LR P+G + + YWYF RLY+E
Sbjct: 128 CHFRLDSV-----DVQVILSNLEADSLRVEPLGY-DAKNSGYWYFYGTRLYREDKATGGS 181

Query: 697 AXXXXXXXXXXXXXXXXXXXDEKG------KWEIICQTKEEWEELIKKYE 828
A + KG W++IC T+E+W+ L K++
Sbjct: 182 ASSSSGSGSGGAGASTGGASNSKGIGSNGTVWQVICFTEEDWQNLAAKFK 231

Lambda K H
0.317 0.133 0.382

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,540,457,376
Number of extensions: 23777672
Number of successful extensions: 57688
Number of sequences better than 10.0: 22
Number of HSP's gapped: 57614
Number of HSP's successfully gapped: 25
Length of query: 497
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 364
Effective length of database: 614,796,874
Effective search space: 223786062136
Effective search space used: 223786062136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.90 gvh: 0.42 alm: 0.39 top: 0.13 tms: 0.00 mit: 0.51 mip: 0.08
nuc: 0.04 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: mitochondrial
24.0 %: cytoplasmic
20.0 %: extracellular, including cell wall
16.0 %: nuclear
4.0 %: vacuolar

>> prediction for Contig-U10026-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0