Contig-U10018-1
Contig ID Contig-U10018-1
Contig update 2002. 9.13
Contig sequence
>Contig-U10018-1 (Contig-U10018-1Q) /CSM_Contig/Contig-U10018-1Q.Seq.d
TGGCCTACTGGTAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAATTACAACAAGAACAAGAGGAAAAAGAAAAAGAAAACACACC
ATTATCACCACCATCTGTACAAACGCAATCACCATCAAAAACAAACTCAT
CAATAAATAATAGTAACACTAACAATACAACAACAACAACAACCACAACA
ACTGTAACAATACCATCATTGGCAAGTTTAATTAAAGCAAAACCAGAGAT
ATTAGATCAAAAACAAACTGAATCTGATCCATCCAATGCACTTTCACCTC
AAAGTTGTTTAAAGAAGAAACAGGATTTAGAGAAAAAAATAATTTGGATG
AAAAATATAGAGGAAATGCCATCAAAATCACAATTAGTTGCTCATAGATC
AAGAGGTTAATCAATACCTCAAATACTTGTTTCATGAATGTTATCCTTCA
ATCTTTAACAGGTTGTCAATTGTTTTTAAGGGTTATTAAAAATTTATCAG
ATTTAGAAGATTTAGGAAAATATCCAACTTTACATAGTTTTAACCAATTT
TATACAGAATATTTTTCAAATCCTACTTCAAATATATTGAATAATAATAG
TAATTCAACAACAACAACATCTTCATCTTCAACTACAGCTACAACAACAT
CAACATCAAATAATAATAAATCGCAAACACCAACATCACCAATACAACAA
CATCATCAGAGTCAAACTAATGGTTTAAGTAATCAACCATCAGTAGCAAC
ACAATCACAACAACAACAACAACCACAACCACCAATTAATCCGAAACATT
TTAATGATTTAGTTAAATCATTTAATTCAAAAGTATCACCAGTACCTCAA
ACAACCGTTTCACCTCATTCAATGGTTCAAGTTTCAAAAAAGAAATTAAA
ACTTCAACTTTATAATAATTCGTTACCACAAACTATTTGTCAACAAGATG
CTCAAGGATTTTTAGTATTCCTTTTAGATTTAATTCATGAAGAATTTTTA
ACATTAATAAAAGATATTGATATACCAAAAGAGGATGATAAATCAACACC
AACATCAACATCAATTGTTGACGATAATTGGGAAGTAGTTGGTAAAAAGG
GTAAAACTGCAATCATTACAAATAGTCAACAAGAATTACCAAAAACTCCA
ATTTCACAAATATTTTCAGGTGTTTTAAGAAGTAGTTTTAATAGAACCGG
AAGTAAAGAATCAATTACAGTTGAACCATTTTATTGTTTACATTTGGATA
TTAGACCAGAAGAGATTAATAGTTTAGAGGATGCACTTAAATTCTTTATG
AAACCAGAGATTATTGAAGGTTATACATGTTCAACTAAAAAGATTGAAAT
ATCAGCTTCAAAGAGTTGGTCCTTTGAATCATTACCAAGAATTTTAATTG
TTCATTTCAAGAGGTTTGCTTTTGAGAGTGATACTTCAAAGAAATTGGAT
AAATTAATTCGTTTCCCAACTCAATTATCACTTTCAACCGCTTCAAATCA
TCAAACTCAAAAGAAATACTCACTATTCTCTGTCGTTAGTCATCATGGTA
GAGGTTTATCTCAAGGTCATTACACTTGTGATATCTATCAACCACAACAA
GCTCAATGGATTAGATATGATGATTCAACTTTTACGAAGTAAAAGAACAA
GATGTTTTAAATAGAGAAGCTTATCTATTATTATATCA

Gap no gap
Contig length 1688
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5149832
End point 5151510
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 6
Link to clone list U10018
List of clone(s)

est1=VFN402F,1,612
est2=AFL175F,246,718
est3=SFD454F,408,977
est4=VFN402Z,941,1606
est5=SFD454Z,960,1689
est6=AFL175Z,1103,1671
Translated Amino Acid sequence
gllvtttttttttttttttittrtrgkrkrkhtiittictnaitiknklink***h*qyn
nnnnhnncnntiigkfn*sktrdirsktn*i*siqctftsklfkeetgfreknnldekyr
gnaikitiscs*IKRLINTSNTCFMNVILQSLTGCQLFLRVIKNLSDLEDLGKYPTLHSF
NQFYTEYFSNPTSNILNNNSNSTTTTSSSSTTATTTSTSNNNKSQTPTSPIQQHHQSQTN
GLSNQPSVATQSQQQQQPQPPINPKHFNDLVKSFNSKVSPVPQTTVSPHSMVQVSKKKLK
LQLYNNSLPQTICQQDAQGFLVFLLDLIHEEFLTLIKDIDIPKEDDKSTPTSTSIVDDNW
EVVGKKGKTAIITNSQQELPKTPISQIFSGVLRSSFNRTGSKESITVEPFYCLHLDIRPE
EINSLEDALKFFMKPEIIEGYTCSTKKIEISASKSWSFESLPRILIVHFKRFAFESDTSK
KLDKLIRFPTQLSLSTASNHQTQKKYSLFSVVSHHGRGLSQGHYTCDIYQPQQAQWIRYD
DSTFTK*knkmf*iekliyyyi


Translated Amino Acid sequence (All Frames)
Frame A:
wptgnnnnnnnnnnnnnnnnynknkrkkkkkthhyhhhlykrnhhqkqthq*iivtltiq
qqqqpqql*qyhhwqv*lkqnqry*iknklnlihpmhfhlkvv*rrnri*rkk*fg*ki*
rkchqnhn*llidqevnqylkylfhecypsifnrlsivfkgy*kfirfrrfrkisnft*f
*pilyriffksyfkyie****fnnnnififnysynninik***iantnitntttssesn*
wfk*stissntitttttttttn*setf**fs*ii*fksitstsnnrftsfngssfkkeik
tstl**fvttnylstrcsrifsipfrfns*rifninkry*ytkrg**intnininc*r*l
gssw*kg*ncnhyk*stritknsnftnifrcfkk*f**nrk*rinys*tillftfgy*tr
rd**frgct*ilyetrdy*rlymfn*kd*nisfkelvl*iitknfncsfqevcf*e*yfk
eig*insfpnsiitfnrfkssnskeiltilcr*ssw*rfisrslhl*ylstttssmd*i*
*fnfyevkeqdvlnreayllly


Frame B:
gllvtttttttttttttttittrtrgkrkrkhtiittictnaitiknklink***h*qyn
nnnnhnncnntiigkfn*sktrdirsktn*i*siqctftsklfkeetgfreknnldekyr
gnaikitiscs*IKRLINTSNTCFMNVILQSLTGCQLFLRVIKNLSDLEDLGKYPTLHSF
NQFYTEYFSNPTSNILNNNSNSTTTTSSSSTTATTTSTSNNNKSQTPTSPIQQHHQSQTN
GLSNQPSVATQSQQQQQPQPPINPKHFNDLVKSFNSKVSPVPQTTVSPHSMVQVSKKKLK
LQLYNNSLPQTICQQDAQGFLVFLLDLIHEEFLTLIKDIDIPKEDDKSTPTSTSIVDDNW
EVVGKKGKTAIITNSQQELPKTPISQIFSGVLRSSFNRTGSKESITVEPFYCLHLDIRPE
EINSLEDALKFFMKPEIIEGYTCSTKKIEISASKSWSFESLPRILIVHFKRFAFESDTSK
KLDKLIRFPTQLSLSTASNHQTQKKYSLFSVVSHHGRGLSQGHYTCDIYQPQQAQWIRYD
DSTFTK*knkmf*iekliyyyi


Frame C:
ayw*qqqqqqqqqqqqqqqlqqeqeekekentplsppsvqtqspsktnssinnsntnntt
tttttttvtipslaslikakpeildqkqtesdpsnalspqsclkkkqdlekkiiwmknie
empsksqlvahrsrg*sipqilvs*mlsfnl*qvvncf*gllkiyqi*ki*eniqlyivl
tnfiqnifqillqiy*iiiviqqqqhlhlqlqlqqhqhqiiinrkhqhhqynniirvklm
v*vinhq*qhnhnnnnnhnhqlirnilmi*lnhliqkyhqylkqpfhliqwfkfqkrn*n
fnfiiiryhklfvnkmlkdf*ysf*i*fmknf*h**kiliyqkrminqhqhqhqlltiig
k*lvkrvklqslqivnknyqklqfhkyfqvf*evvliepevknqlqlnhfivyiwildqk
rliv*rmhlnsl*nqrllkvihvqlkrlkyqlqrvgplnhyqef*lfisrglllrvilqr
nwin*fvsqlnyhfqplqiiklkrnthyslslvimvevylkvitlvisinhnklngldmm
iqllrskrtrcfk*rslsiiis


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U10018-1 (Contig-U10018-1Q)
/CSM_Contig/Contig-U10018-1Q.Seq.d
(1688 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U10018-1 (Contig-U10018-1Q) /CSM_Contig/Conti... 1790 0.0
Contig-U11670-1 (Contig-U11670-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U05324-1 (Contig-U05324-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U12054-1 (Contig-U12054-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11475-1 (Contig-U11475-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11536-1 (Contig-U11536-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U04229-1 (Contig-U04229-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U14660-1 (Contig-U14660-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U13988-1 (Contig-U13988-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U12950-1 (Contig-U12950-1Q) /CSM_Contig/Conti... 38 0.030

>Contig-U10018-1 (Contig-U10018-1Q) /CSM_Contig/Contig-U10018-1Q.Seq.d
Length = 1688

Score = 1790 bits (903), Expect = 0.0
Identities = 903/903 (100%)
Strand = Plus / Plus


Query: 786 ttaatccgaaacattttaatgatttagttaaatcatttaattcaaaagtatcaccagtac 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ttaatccgaaacattttaatgatttagttaaatcatttaattcaaaagtatcaccagtac 845


Query: 846 ctcaaacaaccgtttcacctcattcaatggttcaagtttcaaaaaagaaattaaaacttc 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ctcaaacaaccgtttcacctcattcaatggttcaagtttcaaaaaagaaattaaaacttc 905


Query: 906 aactttataataattcgttaccacaaactatttgtcaacaagatgctcaaggatttttag 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aactttataataattcgttaccacaaactatttgtcaacaagatgctcaaggatttttag 965


Query: 966 tattccttttagatttaattcatgaagaatttttaacattaataaaagatattgatatac 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tattccttttagatttaattcatgaagaatttttaacattaataaaagatattgatatac 1025


Query: 1026 caaaagaggatgataaatcaacaccaacatcaacatcaattgttgacgataattgggaag 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 caaaagaggatgataaatcaacaccaacatcaacatcaattgttgacgataattgggaag 1085


Query: 1086 tagttggtaaaaagggtaaaactgcaatcattacaaatagtcaacaagaattaccaaaaa 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tagttggtaaaaagggtaaaactgcaatcattacaaatagtcaacaagaattaccaaaaa 1145


Query: 1146 ctccaatttcacaaatattttcaggtgttttaagaagtagttttaatagaaccggaagta 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 ctccaatttcacaaatattttcaggtgttttaagaagtagttttaatagaaccggaagta 1205


Query: 1206 aagaatcaattacagttgaaccattttattgtttacatttggatattagaccagaagaga 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 aagaatcaattacagttgaaccattttattgtttacatttggatattagaccagaagaga 1265


Query: 1266 ttaatagtttagaggatgcacttaaattctttatgaaaccagagattattgaaggttata 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 ttaatagtttagaggatgcacttaaattctttatgaaaccagagattattgaaggttata 1325


Query: 1326 catgttcaactaaaaagattgaaatatcagcttcaaagagttggtcctttgaatcattac 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1326 catgttcaactaaaaagattgaaatatcagcttcaaagagttggtcctttgaatcattac 1385


Query: 1386 caagaattttaattgttcatttcaagaggtttgcttttgagagtgatacttcaaagaaat 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 caagaattttaattgttcatttcaagaggtttgcttttgagagtgatacttcaaagaaat 1445


Query: 1446 tggataaattaattcgtttcccaactcaattatcactttcaaccgcttcaaatcatcaaa 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 tggataaattaattcgtttcccaactcaattatcactttcaaccgcttcaaatcatcaaa 1505


Query: 1506 ctcaaaagaaatactcactattctctgtcgttagtcatcatggtagaggtttatctcaag 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1506 ctcaaaagaaatactcactattctctgtcgttagtcatcatggtagaggtttatctcaag 1565


Query: 1566 gtcattacacttgtgatatctatcaaccacaacaagctcaatggattagatatgatgatt 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1566 gtcattacacttgtgatatctatcaaccacaacaagctcaatggattagatatgatgatt 1625


Query: 1626 caacttttacgaagtaaaagaacaagatgttttaaatagagaagcttatctattattata 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1626 caacttttacgaagtaaaagaacaagatgttttaaatagagaagcttatctattattata 1685


Query: 1686 tca 1688
|||
Sbjct: 1686 tca 1688


Score = 737 bits (372), Expect = 0.0
Identities = 386/393 (98%)
Strand = Plus / Plus


Query: 211 taccatcattggcaagtttaattaaagcaaaaccagagatattagatcaaaaacaaactg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 taccatcattggcaagtttaattaaagcaaaaccagagatattagatcaaaaacaaactg 270


Query: 271 aatctgatccatccaatgcactttcacctcaaagttgtttaaagaagaaacaggatttag 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aatctgatccatccaatgcactttcacctcaaagttgtttaaagaagaaacaggatttag 330


Query: 331 agnnnnnnntaatttggatgaaaaatatagaggaaatgccatcaaaatcacaattagttg 390
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agaaaaaaataatttggatgaaaaatatagaggaaatgccatcaaaatcacaattagttg 390


Query: 391 ctcatagatcaagaggttaatcaatacctcaaatacttgtttcatgaatgttatccttca 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctcatagatcaagaggttaatcaatacctcaaatacttgtttcatgaatgttatccttca 450


Query: 451 atctttaacaggttgtcaattgtttttaagggttattaaaaatttatcagatttagaaga 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atctttaacaggttgtcaattgtttttaagggttattaaaaatttatcagatttagaaga 510


Query: 511 tttaggaaaatatccaactttacatagttttaaccaattttatacagaatatttttcaaa 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttaggaaaatatccaactttacatagttttaaccaattttatacagaatatttttcaaa 570


Query: 571 tcctacttcaaatatattgaataataatagtaa 603
|||||||||||||||||||||||||||||||||
Sbjct: 571 tcctacttcaaatatattgaataataatagtaa 603


Score = 172 bits (87), Expect = 8e-43
Identities = 87/87 (100%)
Strand = Plus / Plus


Query: 659 aataataataaatcgcaaacaccaacatcaccaatacaacaacatcatcagagtcaaact 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aataataataaatcgcaaacaccaacatcaccaatacaacaacatcatcagagtcaaact 718


Query: 719 aatggtttaagtaatcaaccatcagta 745
|||||||||||||||||||||||||||
Sbjct: 719 aatggtttaagtaatcaaccatcagta 745


Score = 139 bits (70), Expect = 1e-32
Identities = 70/70 (100%)
Strand = Plus / Plus


Query: 95 cacaccattatcaccaccatctgtacaaacgcaatcaccatcaaaaacaaactcatcaat 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 cacaccattatcaccaccatctgtacaaacgcaatcaccatcaaaaacaaactcatcaat 154


Query: 155 aaataatagt 164
||||||||||
Sbjct: 155 aaataatagt 164


Score = 30.2 bits (15), Expect = 7.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1050 caacatcaacatcaa 1064
|||||||||||||||
Sbjct: 645 caacatcaacatcaa 659


>Contig-U11670-1 (Contig-U11670-1Q) /CSM_Contig/Contig-U11670-1Q.Seq.d
Length = 971

Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 1041 aatcaacaccaacatcaacatcaa 1064
||||||||||||||||||||||||
Sbjct: 515 aatcaacaccaacatcaacatcaa 538


Score = 40.1 bits (20), Expect = 0.008
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1044 caacaccaacatcaacatca 1063
||||||||||||||||||||
Sbjct: 554 caacaccaacatcaacatca 573


Score = 38.2 bits (19), Expect = 0.030
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 1042 atcaacaccaacatcaacatcaa 1064
||||||||||||| |||||||||
Sbjct: 546 atcaacaccaacaccaacatcaa 568


Score = 38.2 bits (19), Expect = 0.030
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1042 atcaacaccaacatcaaca 1060
|||||||||||||||||||
Sbjct: 534 atcaacaccaacatcaaca 552


>Contig-U05324-1 (Contig-U05324-1Q) /CSM_Contig/Contig-U05324-1Q.Seq.d
Length = 359

Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 1044 caacaccaacatcaacatcaat 1065
||||||||||||||||||||||
Sbjct: 102 caacaccaacatcaacatcaat 123


Score = 34.2 bits (17), Expect = 0.47
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1044 caacaccaacatcaacatcaa 1064
||||||||||| |||||||||
Sbjct: 96 caacaccaacaccaacatcaa 116


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,816
Number of Sequences: 6905
Number of extensions: 37816
Number of successful extensions: 3875
Number of sequences better than 10.0: 395
length of query: 1688
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1672
effective length of database: 5,564,391
effective search space: 9303661752
effective search space used: 9303661752
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U10018-1 (Contig-U10018-1Q) /CSM_Contig/Contig-U10018-1Q.Seq.d
(1688 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AF093690) Dictyostelium discoideum ubiquitin hydrolase B (u... 1677 0.0 3
(BJ399827) Dictyostelium discoideum cDNA clone:dds7l14, 3' e... 1445 0.0 1
(BJ435404) Dictyostelium discoideum cDNA clone:ddv27d02, 3' ... 1304 0.0 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 1015 0.0 2
(BJ345468) Dictyostelium discoideum cDNA clone:dda23e19, 3' ... 1021 0.0 2
(BJ388055) Dictyostelium discoideum cDNA clone:dds7l14, 5' e... 391 0.0 3
(BJ416702) Dictyostelium discoideum cDNA clone:ddv27d02, 5' ... 513 0.0 3
(BJ328328) Dictyostelium discoideum cDNA clone:dda23e19, 5' ... 392 0.0 3
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 36 0.002 9
(EK014738) 1092955225606 Global-Ocean-Sampling_GS-31-01-01-1... 54 0.009 2
(AC152519) Bos taurus clone CH240-11D15, WORKING DRAFT SEQUE... 36 0.044 2
(EJ491105) 1095403540729 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.28 1
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.73 7
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 42 0.80 10
(AC189030) Taeniopygia guttata chromosome UNK clone TGMCBa-1... 48 1.1 1
(AL354976) Human DNA sequence from clone RP11-20I6 on chromo... 48 1.1 1
(AC111948) Rattus norvegicus clone CH230-212L12, WORKING DRA... 48 1.1 1
(AC098321) Rattus norvegicus clone CH230-1M1, WORKING DRAFT ... 48 1.1 1
(AL445244) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 48 1.1 1
(AL359974) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 48 1.1 1
(AL358932) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 1.1 1
(ER623721) 1093017516108 Global-Ocean-Sampling_GS-36-01-01-2... 48 1.1 1
(EK526969) 1095515645959 Global-Ocean-Sampling_GS-32-01-01-1... 48 1.1 1
(EJ953858) 1093018961426 Global-Ocean-Sampling_GS-30-02-01-1... 48 1.1 1
(EJ923075) 1093018769851 Global-Ocean-Sampling_GS-30-02-01-1... 48 1.1 1
(BJ363610) Dictyostelium discoideum cDNA clone:ddc27e16, 5' ... 48 1.1 1
(BJ331789) Dictyostelium discoideum cDNA clone:dda36h01, 5' ... 48 1.1 1
(EX404742) GQ03511.B7_F05 GQ035 - Needles - End of season Pi... 48 1.1 1
(EX358643) GQ03125.B7_P11 GQ031 - Xylem Scrapings (Normalize... 48 1.1 1
(AC182668) Populus trichocarpa clone Pop1-19F23, complete se... 40 1.3 5
(DX250423) OR_ABa0138E14.f OR_ABa Oryza ridleyi genomic clon... 36 1.4 2
(DX002302) OG_ABa0127D23.f OG_ABa Oryza granulata genomic cl... 44 1.4 2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 1.6 9
(EK308899) 1095462390246 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.7 2
(DU791335) APKH4059.g2 HF770_12-21-03 uncultured marine micr... 40 1.8 2
(AC021130) Homo sapiens chromosome 11 clone RP11-382C9, WORK... 38 1.9 5
(AC133408) Rattus norvegicus clone CH230-129C18, *** SEQUENC... 36 2.1 2
(AC127119) Rattus norvegicus clone CH230-215K6, *** SEQUENCI... 36 2.2 2
(AC183665) Pan troglodytes BAC clone CH251-655J2 from chromo... 36 2.2 9
(AL031745) Plasmodium falciparum DNA from MAL1P2. 36 2.8 11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 3.3 18
(AC137389) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 36 3.8 7
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 4.0 12
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 46 4.1 10
(AC154100) Mus musculus chromosome 5, clone RP24-154F3, comp... 46 4.3 1
(AC151474) Mus musculus BAC clone RP23-338P12 from 5, comple... 46 4.3 1
(AC140398) Mus musculus BAC clone RP23-162P5 from chromosome... 46 4.3 1
(AP007161) Aspergillus oryzae RIB40 genomic DNA, SC012. 46 4.3 1
(CQ428197) Sequence 13231 from Patent WO0151628. 46 4.3 1
(AC064802) Homo sapiens chromosome 8, clone RP11-267L5, comp... 46 4.3 1
(AC025881) Homo sapiens chromosome 8, clone RP11-393K19, com... 46 4.3 1
(AC160365) Bos taurus clone CH240-83E1, WORKING DRAFT SEQUEN... 46 4.3 1
(AC080141) Mus musculus strain C57BL6/J chromosome 5 clone R... 46 4.3 1
(CU207226) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 4.3 1
(AC223640) Bos taurus clone CH240-463G16, WORKING DRAFT SEQU... 46 4.3 1
(ER548875) 1093016205138 Global-Ocean-Sampling_GS-35-01-01-1... 46 4.3 1
(EK577837) 1095521371616 Global-Ocean-Sampling_GS-32-01-01-1... 46 4.3 1
(CT400305) Sus scrofa genomic clone CH242-405L9, genomic sur... 46 4.3 1
(EC689757) JLE00002977 Jakoba libera Company (STANDARD) Jako... 46 4.3 1
(DR026420) Osmo00478 F. cylindrus osmotic stress library Fra... 46 4.3 1
(AF160645) D0274417 RZPD library 575 Danio rerio cDNA clone ... 46 4.3 1
(AF160643) D0274415 RZPD library 575 Danio rerio cDNA clone ... 46 4.3 1
(AA933304) SWBmL3SA487T3 Brugia malayi L3 subtracted cDNA li... 46 4.3 1
(EY504188) CBBP7356.fwd CBBP Hirudo medicinalis hermaphrodit... 46 4.3 1
(EY504187) CBBP7356.rev CBBP Hirudo medicinalis hermaphrodit... 46 4.3 1
(EY501525) CBBP587.rev CBBP Hirudo medicinalis hermaphrodite... 46 4.3 1
(EY495284) CBBP2206.fwd CBBP Hirudo medicinalis hermaphrodit... 46 4.3 1
(EY495283) CBBP2206.rev CBBP Hirudo medicinalis hermaphrodit... 46 4.3 1
(EY089692) CAZI19015.rev CAZI Artemisia annua normalized lea... 46 4.3 1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 4.5 20
(AC006994) Homo sapiens BAC clone RP11-396J8 from 2, complet... 44 5.6 6
(FC768312) CBBN4343.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv... 40 5.8 2
(EJ100335) 1095467041780 Global-Ocean-Sampling_GS-26-01-01-1... 40 6.0 2
(AC171957) Bos taurus clone CH240-232G1, WORKING DRAFT SEQUE... 36 6.5 7
(AC084457) Caenorhabditis briggsae cosmid CB032B18, complete... 40 6.8 2
(AM433558) Vitis vinifera, whole genome shotgun sequence, co... 36 7.0 6
(AC214282) Populus trichocarpa clone POP018-K04, complete se... 34 7.9 2
(AC157892) Medicago truncatula chromosome 7 BAC clone mte1-8... 32 8.1 2
(AC194364) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 32 8.2 2
(CU457452) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 8.3 6
(AY232271) Dictyostelium discoideum putative protein Roco9 (... 38 8.3 4
(CP000013) Borrelia garinii PBi, complete genome. 32 9.3 18

>(AF093690) Dictyostelium discoideum ubiquitin hydrolase B (ubpB)
mRNA, partial cds.
Length = 1642

Score = 1677 bits (846), Expect(3) = 0.0
Identities = 849/850 (99%)
Strand = Plus / Plus


Query: 786 ttaatccgaaacattttaatgatttagttaaatcatttaattcaaaagtatcaccagtac 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttaatccgaaacattttaatgatttagttaaatcatttaattcaaaagtatcaccagtac 787


Query: 846 ctcaaacaaccgtttcacctcattcaatggttcaagtttcaaaaaagaaattaaaacttc 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctcaaacaaccgtttcacctcattcaatggttcaagtttcaaaaaagaaattaaaacttc 847


Query: 906 aactttataataattcgttaccacaaactatttgtcaacaagatgctcaaggatttttag 965
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 848 aactttataataattcgttaccacaaactatttgtcaacaagatgctcaagaatttttag 907


Query: 966 tattccttttagatttaattcatgaagaatttttaacattaataaaagatattgatatac 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 tattccttttagatttaattcatgaagaatttttaacattaataaaagatattgatatac 967


Query: 1026 caaaagaggatgataaatcaacaccaacatcaacatcaattgttgacgataattgggaag 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 caaaagaggatgataaatcaacaccaacatcaacatcaattgttgacgataattgggaag 1027


Query: 1086 tagttggtaaaaagggtaaaactgcaatcattacaaatagtcaacaagaattaccaaaaa 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 tagttggtaaaaagggtaaaactgcaatcattacaaatagtcaacaagaattaccaaaaa 1087


Query: 1146 ctccaatttcacaaatattttcaggtgttttaagaagtagttttaatagaaccggaagta 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 ctccaatttcacaaatattttcaggtgttttaagaagtagttttaatagaaccggaagta 1147


Query: 1206 aagaatcaattacagttgaaccattttattgtttacatttggatattagaccagaagaga 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 aagaatcaattacagttgaaccattttattgtttacatttggatattagaccagaagaga 1207


Query: 1266 ttaatagtttagaggatgcacttaaattctttatgaaaccagagattattgaaggttata 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 ttaatagtttagaggatgcacttaaattctttatgaaaccagagattattgaaggttata 1267


Query: 1326 catgttcaactaaaaagattgaaatatcagcttcaaagagttggtcctttgaatcattac 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 catgttcaactaaaaagattgaaatatcagcttcaaagagttggtcctttgaatcattac 1327


Query: 1386 caagaattttaattgttcatttcaagaggtttgcttttgagagtgatacttcaaagaaat 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 caagaattttaattgttcatttcaagaggtttgcttttgagagtgatacttcaaagaaat 1387


Query: 1446 tggataaattaattcgtttcccaactcaattatcactttcaaccgcttcaaatcatcaaa 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 tggataaattaattcgtttcccaactcaattatcactttcaaccgcttcaaatcatcaaa 1447


Query: 1506 ctcaaaagaaatactcactattctctgtcgttagtcatcatggtagaggtttatctcaag 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1448 ctcaaaagaaatactcactattctctgtcgttagtcatcatggtagaggtttatctcaag 1507


Query: 1566 gtcattacacttgtgatatctatcaaccacaacaagctcaatggattagatatgatgatt 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1508 gtcattacacttgtgatatctatcaaccacaacaagctcaatggattagatatgatgatt 1567


Query: 1626 caacttttac 1635
||||||||||
Sbjct: 1568 caacttttac 1577

Score = 105 bits (53), Expect(3) = 0.0
Identities = 53/53 (100%)
Strand = Plus / Plus


Query: 1636 gaagtaaaagaacaagatgttttaaatagagaagcttatctattattatatca 1688
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 gaagtaaaagaacaagatgttttaaatagagaagcttatctattattatatca 1631

Score = 75.8 bits (38), Expect(3) = 0.0
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 709 gagtcaaactaatggtttaagtaatcaaccatcagtag 746
||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gagtcaaactaatggtttaagtaatcaaccatcagtag 688

Score = 392 bits (198), Expect(5) = 0.0
Identities = 198/198 (100%)
Strand = Plus / Plus


Query: 407 ttaatcaatacctcaaatacttgtttcatgaatgttatccttcaatctttaacaggttgt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttaatcaatacctcaaatacttgtttcatgaatgttatccttcaatctttaacaggttgt 408


Query: 467 caattgtttttaagggttattaaaaatttatcagatttagaagatttaggaaaatatcca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 caattgtttttaagggttattaaaaatttatcagatttagaagatttaggaaaatatcca 468


Query: 527 actttacatagttttaaccaattttatacagaatatttttcaaatcctacttcaaatata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 actttacatagttttaaccaattttatacagaatatttttcaaatcctacttcaaatata 528


Query: 587 ttgaataataatagtaat 604
||||||||||||||||||
Sbjct: 529 ttgaataataatagtaat 546

Score = 242 bits (122), Expect(5) = 0.0
Identities = 122/122 (100%)
Strand = Plus / Plus


Query: 211 taccatcattggcaagtttaattaaagcaaaaccagagatattagatcaaaaacaaactg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 taccatcattggcaagtttaattaaagcaaaaccagagatattagatcaaaaacaaactg 211


Query: 271 aatctgatccatccaatgcactttcacctcaaagttgtttaaagaagaaacaggatttag 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aatctgatccatccaatgcactttcacctcaaagttgtttaaagaagaaacaggatttag 271


Query: 331 ag 332
||
Sbjct: 272 ag 273

Score = 137 bits (69), Expect(5) = 0.0
Identities = 69/69 (100%)
Strand = Plus / Plus


Query: 340 taatttggatgaaaaatatagaggaaatgccatcaaaatcacaattagttgctcatagat 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taatttggatgaaaaatatagaggaaatgccatcaaaatcacaattagttgctcatagat 340


Query: 400 caagaggtt 408
|||||||||
Sbjct: 341 caagaggtt 349

Score = 65.9 bits (33), Expect(5) = 0.0
Identities = 36/37 (97%)
Strand = Plus / Plus


Query: 99 ccattatcaccaccatctgtacaaacgcaatcaccat 135
|||||||||||||||||||||||||| ||||||||||
Sbjct: 40 ccattatcaccaccatctgtacaaacacaatcaccat 76

Score = 30.2 bits (15), Expect(5) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1050 caacatcaacatcaa 1064
|||||||||||||||
Sbjct: 587 caacatcaacatcaa 601

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,789,132,437
Number of extensions: 109204857
Number of successful extensions: 9066992
Number of sequences better than 10.0: 82
Length of query: 1688
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1664
Effective length of database: 97,308,875,965
Effective search space: 161921969605760
Effective search space used: 161921969605760
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.27
Homology vs Protein
Query= Contig-U10018-1 (Contig-U10018-1Q) /CSM_Contig/Contig-U10018-1Q.Seq.d
(1688 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY127002_1(AY127002|pid:none) Arabidopsis thaliana AT4g30890/F6I... 160 1e-37
(Q9FPS3) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 24;... 160 1e-37
AM424959_1(AM424959|pid:none) Vitis vinifera contig VV78X172308.... 159 2e-37
BT084000_1(BT084000|pid:none) Zea mays full-length cDNA clone ZM... 156 1e-36
BC105892_1(BC105892|pid:none) Rattus norvegicus ubiquitin specif... 151 6e-35
AK165156_1(AK165156|pid:none) Mus musculus 8 cells embryo 8 cell... 150 1e-34
AK153675_1(AK153675|pid:none) Mus musculus 3 days neonate thymus... 150 2e-34
AK172443_1(AK172443|pid:none) Mus musculus activated spleen cDNA... 150 2e-34
AK129083_1(AK129083|pid:none) Mus musculus mRNA for mKIAA0190 pr... 150 2e-34
(P52479) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 10;... 150 2e-34
AB383788_1(AB383788|pid:none) Synthetic construct DNA, clone: pF... 149 3e-34
(Q14694) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 10;... 149 3e-34
AY890684_1(AY890684|pid:none) Synthetic construct Homo sapiens c... 149 3e-34
BX537402_1(BX537402|pid:none) Homo sapiens mRNA; cDNA DKFZp686O1... 149 3e-34
BC044285_1(BC044285|pid:none) Xenopus laevis ubiquitin specific ... 147 1e-33
BC110953_1(BC110953|pid:none) Xenopus laevis hypothetical protei... 147 1e-33
BC075544_1(BC075544|pid:none) Xenopus tropicalis ubiquitin speci... 146 3e-33
AM920437_1158(AM920437|pid:none) Penicillium chrysogenum Wiscons... 144 7e-33
AP007161_818(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 142 3e-32
AJ720400_1(AJ720400|pid:none) Gallus gallus mRNA for hypothetica... 142 4e-32
CU640366_1369(CU640366|pid:none) Podospora anserina genomic DNA ... 133 2e-29
AE014296_168(AE014296|pid:none) Drosophila melanogaster chromoso... 131 6e-29
BC064516_1(BC064516|pid:none) Homo sapiens ubiquitin specific pe... 120 1e-25
CR382125_38(CR382125|pid:none) Kluyveromyces lactis strain NRRL ... 117 1e-24
CR380955_280(CR380955|pid:none) Candida glabrata strain CBS138 c... 104 1e-20
CR382133_324(CR382133|pid:none) Debaryomyces hansenii strain CBS... 99 5e-19
CU928180_314(CU928180|pid:none) Kluyveromyces thermotolerans str... 98 8e-19
BC043910_1(BC043910|pid:none) Xenopus laevis ubiquitin specific ... 92 6e-17
BC167952_1(BC167952|pid:none) Xenopus tropicalis cDNA clone MGC:... 87 1e-15
AF064250_1(AF064250|pid:none) Gallus gallus ubiquitin specific p... 87 2e-15
AB179348_1(AB179348|pid:none) Macaca fascicularis testis cDNA cl... 87 2e-15
AK091775_1(AK091775|pid:none) Homo sapiens cDNA FLJ34456 fis, cl... 87 2e-15
BC086963_1(BC086963|pid:none) Danio rerio zgc:92134, mRNA (cDNA ... 87 2e-15
AF064248_1(AF064248|pid:none) Gallus gallus ubiquitin specific p... 86 3e-15
AK300590_1(AK300590|pid:none) Homo sapiens cDNA FLJ53203 complet... 86 5e-15
(P40818) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; ... 86 5e-15
AK296480_1(AK296480|pid:none) Homo sapiens cDNA FLJ55333 complet... 86 5e-15
AF057146_1(AF057146|pid:none) Mus musculus putative deubiquitina... 85 7e-15
BC027052_1(BC027052|pid:none) Mus musculus ubiquitin specific pe... 85 7e-15
BC122571_1(BC122571|pid:none) Bos taurus ubiquitin specific pept... 85 7e-15
AK122195_1(AK122195|pid:none) Mus musculus mRNA for mKIAA0055 pr... 85 7e-15
BC092078_1(BC092078|pid:none) Mus musculus ubiquitin specific pe... 85 7e-15
AL732330_1(AL732330|pid:none) Mouse DNA sequence from clone RP23... 85 7e-15
CR382124_346(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 85 9e-15
CR940348_619(CR940348|pid:none) Theileria annulata strain Ankara... 84 1e-14
AF079564_1(AF079564|pid:none) Homo sapiens ubiquitin-specific pr... 84 2e-14
(O75604) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 2; ... 84 2e-14
BC041366_1(BC041366|pid:none) Homo sapiens ubiquitin specific pe... 84 2e-14
DQ895743_1(DQ895743|pid:none) Synthetic construct Homo sapiens c... 84 2e-14
BX537420_1(BX537420|pid:none) Homo sapiens mRNA; cDNA DKFZp686M2... 84 2e-14
AY751540_1(AY751540|pid:none) Ubiquitin protease vector pHUsp2-c... 84 2e-14
AF106658_1(AF106658|pid:none) Rattus norvegicus deubiquitinating... 84 2e-14
AF202453_1(AF202453|pid:none) Rattus norvegicus ubiquitin specif... 84 2e-14
AK138799_1(AK138799|pid:none) Mus musculus 0 day neonate thymus ... 84 2e-14
AF079565_1(AF079565|pid:none) Mus musculus ubiquitin-specific pr... 84 2e-14
AE014298_3293(AE014298|pid:none) Drosophila melanogaster chromos... 82 8e-14
AK301563_1(AK301563|pid:none) Homo sapiens cDNA FLJ60359 complet... 82 8e-14
AE014298_3294(AE014298|pid:none) Drosophila melanogaster chromos... 82 8e-14
AE014298_3290(AE014298|pid:none) Drosophila melanogaster chromos... 82 8e-14
CR382129_362(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 82 8e-14
AC122160_6(AC122160|pid:none) Medicago truncatula clone mth2-23d... 76 9e-14
AB168551_1(AB168551|pid:none) Macaca fascicularis testis cDNA cl... 81 1e-13
(Q91W36) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 3; ... 80 2e-13
AP004094_8(AP004094|pid:none) Oryza sativa Japonica Group genomi... 72 3e-13
AK301236_1(AK301236|pid:none) Homo sapiens cDNA FLJ60355 complet... 79 4e-13
AK057225_1(AK057225|pid:none) Homo sapiens cDNA FLJ32663 fis, cl... 79 4e-13
AF302671_1(AF302671|pid:none) Arabidopsis thaliana ubiquitin-spe... 79 5e-13
AC116986_23(AC116986|pid:none) Dictyostelium discoideum chromoso... 79 6e-13
BC126023_1(BC126023|pid:none) Xenopus laevis ubiquitin specific ... 79 6e-13
DQ076481_1(DQ076481|pid:none) Rattus norvegicus ubiquitin specif... 78 8e-13
CR382130_972(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 78 1e-12
AY224488_1(AY224488|pid:none) Oryza sativa (japonica cultivar-gr... 73 1e-12
AE014297_3055(AE014297|pid:none) Drosophila melanogaster chromos... 77 1e-12
BT058062_1(BT058062|pid:none) Drosophila melanogaster MIP03335 f... 77 1e-12
CP001577_421(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 77 1e-12
AF073344_1(AF073344|pid:none) Homo sapiens ubiquitin-specific pr... 77 1e-12
BC075590_1(BC075590|pid:none) Xenopus tropicalis ubiquitin speci... 77 2e-12
AP005919_13(AP005919|pid:none) Oryza sativa Japonica Group genom... 72 2e-12
AP005919_12(AP005919|pid:none) Oryza sativa Japonica Group genom... 72 2e-12
AK102933_1(AK102933|pid:none) Oryza sativa Japonica Group cDNA c... 72 2e-12
AE014296_1062(AE014296|pid:none) Drosophila melanogaster chromos... 77 2e-12
CU928175_403(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 77 2e-12
BT010120_1(BT010120|pid:none) Drosophila melanogaster AT24152 fu... 77 2e-12
BT004507_1(BT004507|pid:none) Drosophila melanogaster AT31021 fu... 77 2e-12
CR762205_1(CR762205|pid:none) Xenopus tropicalis finished cDNA, ... 77 2e-12
AE014296_1063(AE014296|pid:none) Drosophila melanogaster chromos... 77 2e-12
AE014296_1065(AE014296|pid:none) Drosophila melanogaster chromos... 77 2e-12
(P39967) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 9; ... 76 3e-12
AL606615_26(AL606615|pid:none) Oryza sativa genomic DNA, chromos... 75 9e-12
AF077040_1(AF077040|pid:none) Homo sapiens SIH003 mRNA, complete... 74 1e-11
AL840632_1(AL840632|pid:none) Mouse DNA sequence from clone RP23... 74 1e-11
BC068889_1(BC068889|pid:none) Xenopus laevis hypothetical protei... 74 1e-11
(P39538) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 12;... 74 2e-11
BC047168_1(BC047168|pid:none) Danio rerio ubiquitin specific pep... 72 2e-11
BC057482_1(BC057482|pid:none) Danio rerio ubiquitin specific pep... 72 2e-11
FN392319_107(FN392319|pid:none) Pichia pastoris GS115 chromosome... 73 3e-11
EU975665_1(EU975665|pid:none) Zea mays clone 496098 unknown mRNA. 72 3e-11
(Q8LAM0) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ... 73 4e-11
FN357441_1(FN357441|pid:none) Schistosoma mansoni genome sequenc... 73 4e-11
(Q70EK9) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 51;... 72 5e-11
BT056040_1(BT056040|pid:none) Zea mays full-length cDNA clone ZM... 72 6e-11
(A6H8I0) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 22;... 71 8e-11
CR847787_2(CR847787|pid:none) Zebrafish DNA sequence from clone ... 71 1e-10
AP005755_22(AP005755|pid:none) Oryza sativa Japonica Group genom... 71 1e-10
AM489317_1(AM489317|pid:none) Vitis vinifera contig VV78X020403.... 71 1e-10
(Q9FIQ1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 21;... 71 1e-10
AC140026_8(AC140026|pid:none) Medicago truncatula clone mth2-36j... 70 2e-10
AM392541_1(AM392541|pid:none) Synthetic construct Homo sapiens c... 70 2e-10
(Q9H0E7) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 44;... 70 2e-10
AP003917_17(AP003917|pid:none) Oryza sativa Japonica Group genom... 70 3e-10
BC137942_1(BC137942|pid:none) Mus musculus deubiquitinating enzy... 70 3e-10
AM434540_1(AM434540|pid:none) Vitis vinifera contig VV78X210461.... 70 3e-10
CR382132_642(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 70 3e-10
CR954213_1(CR954213|pid:none) Ostreococcus tauri strain OTTH0595... 69 4e-10
AM270233_25(AM270233|pid:none) Aspergillus niger contig An11c016... 69 4e-10
BC016487_1(BC016487|pid:none) Homo sapiens ubiquitin specific pe... 69 4e-10
AY058707_1(AY058707|pid:none) Drosophila melanogaster LD43147 fu... 69 4e-10
(Q9VVR1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase non... 69 4e-10
AP008218_1389(AP008218|pid:none) Oryza sativa (japonica cultivar... 69 4e-10
AF302666_1(AF302666|pid:none) Arabidopsis thaliana ubiquitin-spe... 69 4e-10
CP000591_2(CP000591|pid:none) Ostreococcus lucimarinus CCE9901 c... 69 4e-10
AB384215_1(AB384215|pid:none) Synthetic construct DNA, clone: pF... 69 5e-10
BC071582_1(BC071582|pid:none) Homo sapiens ubiquitin specific pe... 69 5e-10
AX107033_1(AX107033|pid:none) Sequence 2 from Patent WO0123585. 69 5e-10
BC027992_1(BC027992|pid:none) Homo sapiens ubiquitin specific pe... 69 5e-10
AB040886_1(AB040886|pid:none) Homo sapiens mRNA for KIAA1453 pro... 69 5e-10
AK022913_1(AK022913|pid:none) Homo sapiens cDNA FLJ12851 fis, cl... 69 5e-10
CP000498_314(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 69 5e-10
CR954211_2(CR954211|pid:none) Ostreococcus tauri strain OTTH0595... 69 5e-10
AK001671_1(AK001671|pid:none) Homo sapiens cDNA FLJ10809 fis, cl... 69 5e-10
AK030383_1(AK030383|pid:none) Mus musculus adult male pituitary ... 68 7e-10
(Q5DU02) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 22;... 67 9e-10
AY336567_1(AY336567|pid:none) Mus musculus cell-type embryonic s... 68 9e-10
BC098528_1(BC098528|pid:none) Danio rerio ubiquitin specific pep... 68 9e-10
(O74442) RecName: Full=Probable ubiquitin carboxyl-terminal hydr... 68 9e-10
AK084022_1(AK084022|pid:none) Mus musculus 12 days embryo spinal... 67 9e-10
BC126898_1(BC126898|pid:none) Homo sapiens ubiquitin specific pe... 67 1e-09
BC110499_1(BC110499|pid:none) Homo sapiens ubiquitin specific pe... 67 1e-09
AK301527_1(AK301527|pid:none) Homo sapiens cDNA FLJ55451 partial... 68 1e-09
BC132862_1(BC132862|pid:none) Homo sapiens ubiquitin specific pe... 68 1e-09
AK133251_1(AK133251|pid:none) Mus musculus adult male testis cDN... 68 1e-09
BC057470_1(BC057470|pid:none) Danio rerio ubiquitin specific pep... 68 1e-09
AX882263_1(AX882263|pid:none) Sequence 17168 from Patent EP10746... 68 1e-09
AY618868_1(AY618868|pid:none) Homo sapiens ubiquitin specific pr... 68 1e-09
AX107851_1(AX107851|pid:none) Sequence 2 from Patent WO0123589. 68 1e-09
(Q9H9J4) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 42;... 68 1e-09
(Q3V0C5) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 48;... 68 1e-09
AC124957_10(AC124957|pid:none) Medicago truncatula clone mth2-15... 68 1e-09
AM920427_1084(AM920427|pid:none) Penicillium chrysogenum Wiscons... 67 1e-09
BC145562_1(BC145562|pid:none) Mus musculus ubiquitin specific pe... 67 1e-09
CP000496_11(CP000496|pid:none) Pichia stipitis CBS 6054 chromoso... 67 1e-09
AF229643_1(AF229643|pid:none) Mus musculus ubiquitin specific pr... 66 2e-09
(Q76LT8) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 48;... 67 2e-09
BC021769_1(BC021769|pid:none) Mus musculus ubiquitin specific pe... 67 2e-09
BT040660_1(BT040660|pid:none) Zea mays full-length cDNA clone ZM... 67 2e-09
(O60079) RecName: Full=Probable ubiquitin carboxyl-terminal hydr... 67 2e-09
AL591404_3(AL591404|pid:none) Mouse DNA sequence from clone RP23... 67 2e-09
(Q6DCJ1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 22 ... 67 3e-09
BC078033_1(BC078033|pid:none) Xenopus laevis ubiquitin specific ... 67 3e-09
BC048060_1(BC048060|pid:none) Danio rerio zgc:55661, mRNA (cDNA ... 67 3e-09
AK172230_1(AK172230|pid:none) Mus musculus activated spleen cDNA... 67 3e-09
CT005255_75(CT005255|pid:none) Leishmania major strain Friedlin,... 66 3e-09
AK031767_1(AK031767|pid:none) Mus musculus 11 days embryo head c... 66 3e-09
(P50102) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; ... 66 3e-09
AF544011_1(AF544011|pid:none) Homo sapiens deubiquitinating enzy... 66 3e-09
BC090333_1(BC090333|pid:none) Rattus norvegicus ubiquitin specif... 66 4e-09
AF105715_1(AF105715|pid:none) Gallus gallus ubiquitous nuclear p... 66 4e-09
BC105613_1(BC105613|pid:none) Rattus norvegicus ubiquitin specif... 66 4e-09
CT005269_130(CT005269|pid:none) Leishmania major strain Friedlin... 65 6e-09
AP007157_155(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 65 6e-09
BT044911_1(BT044911|pid:none) Salmo salar clone ssal-rgf-507-046... 65 6e-09
AM494969_140(AM494969|pid:none) Leishmania braziliensis chromoso... 65 6e-09
BC143354_1(BC143354|pid:none) Homo sapiens ubiquitin specific pe... 65 6e-09
BC143349_1(BC143349|pid:none) Homo sapiens ubiquitin specific pe... 65 6e-09
CR382123_148(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 65 6e-09
BC067261_1(BC067261|pid:none) Homo sapiens ubiquitin specific pe... 65 6e-09
(Q9H5N3) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 48;... 65 6e-09
BC011576_1(BC011576|pid:none) Homo sapiens ubiquitin specific pe... 65 6e-09
AB026726_1(AB026726|pid:none) Pichia anomala UBP1, ALX1 genes fo... 65 7e-09
CR380958_59(CR380958|pid:none) Candida glabrata strain CBS138 ch... 65 1e-08
AP007155_236(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 65 1e-08
AB013396_23(AB013396|pid:none) Arabidopsis thaliana genomic DNA,... 65 1e-08
(Q99K46) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 11;... 65 1e-08
BC005470_1(BC005470|pid:none) Mus musculus ubiquitin specific pe... 65 1e-08
FB914696_1(FB914696|pid:none) Sequence 133969 from Patent WO2008... 65 1e-08
BC042353_1(BC042353|pid:none) Xenopus laevis similar to ubiquiti... 64 1e-08
BC115286_1(BC115286|pid:none) Danio rerio ubiquitin specific pep... 64 1e-08
BC100992_1(BC100992|pid:none) Homo sapiens deubiquitinating enzy... 64 1e-08
AM442522_5(AM442522|pid:none) Vitis vinifera contig VV78X189854.... 64 1e-08
BC142473_1(BC142473|pid:none) Bos taurus ubiquitin specific pept... 64 1e-08
AC121489_20(AC121489|pid:none) Oryza sativa (japonica cultivar-g... 64 1e-08
AY533200_1(AY533200|pid:none) Homo sapiens deubiquitinating enzy... 64 1e-08
BC100991_1(BC100991|pid:none) Homo sapiens deubiquitinating enzy... 64 1e-08
BC100993_1(BC100993|pid:none) Homo sapiens deubiquitinating enzy... 64 1e-08
(Q6R6M4) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17-... 64 1e-08
BC082241_1(BC082241|pid:none) Homo sapiens ubiquitin specific pe... 64 2e-08
BC159174_1(BC159174|pid:none) Xenopus tropicalis hypothetical pr... 64 2e-08
BC048269_1(BC048269|pid:none) Homo sapiens ubiquitin specific pe... 64 2e-08
AK294756_1(AK294756|pid:none) Homo sapiens cDNA FLJ54450 complet... 64 2e-08
(Q3UJD6) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19;... 64 2e-08
AB020698_1(AB020698|pid:none) Homo sapiens mRNA for KIAA0891 pro... 64 2e-08
(Q6J1Y9) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19;... 64 2e-08
(O94966) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19;... 64 2e-08
BC065909_1(BC065909|pid:none) Homo sapiens ubiquitin specific pe... 64 2e-08
AK160807_1(AK160807|pid:none) Mus musculus 17 days embryo head c... 64 2e-08
BC142727_1(BC142727|pid:none) Homo sapiens ubiquitin specific pe... 64 2e-08
BC046824_1(BC046824|pid:none) Mus musculus ubiquitin specific pe... 64 2e-08
BC060613_1(BC060613|pid:none) Mus musculus ubiquitin specific pe... 64 2e-08
AP003847_10(AP003847|pid:none) Oryza sativa Japonica Group genom... 64 2e-08
AF393637_1(AF393637|pid:none) Mus musculus deubiquitinating enzy... 64 2e-08
AB073597_1(AB073597|pid:none) Homo sapiens usp11 mRNA for deubiq... 63 3e-08
FN357331_38(FN357331|pid:none) Schistosoma mansoni genome sequen... 63 3e-08
BC000350_1(BC000350|pid:none) Homo sapiens ubiquitin specific pe... 63 3e-08
CU633900_522(CU633900|pid:none) Podospora anserina genomic DNA c... 63 3e-08
AK294635_1(AK294635|pid:none) Homo sapiens cDNA FLJ61237 complet... 63 3e-08
AM502250_343(AM502250|pid:none) Leishmania infantum chromosome 32. 63 3e-08
BC063668_1(BC063668|pid:none) Homo sapiens ubiquitin specific pe... 63 3e-08
BC140849_1(BC140849|pid:none) Homo sapiens ubiquitin specific pe... 63 3e-08
U70369_1(U70369|pid:none) Mus musculus hematopoietic-specific IL... 63 4e-08
CR858432_1(CR858432|pid:none) Pongo abelii mRNA; cDNA DKFZp468L0... 63 4e-08
U70368_1(U70368|pid:none) Mus musculus hematopoietic-specific IL... 63 4e-08
BC152899_1(BC152899|pid:none) Synthetic construct Mus musculus c... 63 4e-08
AP007150_271(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 63 4e-08
AE017341_423(AE017341|pid:none) Cryptococcus neoformans var. neo... 63 4e-08
FN392319_1123(FN392319|pid:none) Pichia pastoris GS115 chromosom... 63 4e-08
BC125668_1(BC125668|pid:none) Xenopus tropicalis hypothetical pr... 62 5e-08
BC095783_1(BC095783|pid:none) Danio rerio zgc:112364, mRNA (cDNA... 62 5e-08
BC146298_1(BC146298|pid:none) Synthetic construct Mus musculus c... 62 5e-08
CR382125_884(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 62 5e-08
(O60139) RecName: Full=Probable ubiquitin carboxyl-terminal hydr... 62 5e-08
AP007162_435(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 62 5e-08
AB011101_1(AB011101|pid:none) Homo sapiens mRNA for KIAA0529 pro... 62 6e-08
(Q9Y4E8) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15;... 62 6e-08
BT058766_1(BT058766|pid:none) Salmo salar clone ssal-rgf-501-332... 62 6e-08
AK122301_1(AK122301|pid:none) Mus musculus mRNA for mKIAA0529 pr... 62 6e-08
AF013990_1(AF013990|pid:none) Homo sapiens ubiquitin C-terminal ... 62 6e-08
AM502234_76(AM502234|pid:none) Leishmania infantum chromosome 16. 62 6e-08
BC125123_1(BC125123|pid:none) Homo sapiens ubiquitin specific pe... 62 6e-08
(Q8R5H1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15;... 62 6e-08
AL021889_7(AL021889|pid:none) Arabidopsis thaliana DNA chromosom... 62 6e-08
(Q0WX57) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17;... 62 6e-08
AK168755_1(AK168755|pid:none) Mus musculus 17 days pregnant adul... 62 6e-08
CR954204_206(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 62 6e-08
(Q9FPS7) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 20;... 62 6e-08
AK161771_1(AK161771|pid:none) Mus musculus adult male thymus cDN... 62 6e-08
AK161469_1(AK161469|pid:none) Mus musculus adult male testis cDN... 62 6e-08
AM502250_167(AM502250|pid:none) Leishmania infantum chromosome 32. 62 6e-08
BC011341_1(BC011341|pid:none) Mus musculus ubiquitin specific pe... 62 8e-08
AK164245_1(AK164245|pid:none) Mus musculus 9 days embryo whole b... 62 8e-08
AK089425_1(AK089425|pid:none) Mus musculus B6-derived CD11 +ve d... 62 8e-08
AL132898_1(AL132898|pid:none) Caenorhabditis elegans YAC Y59A8B,... 62 8e-08
(Q61068) RecName: Full=Ubiquitin carboxyl-terminal hydrolase DUB... 62 8e-08
AK302438_1(AK302438|pid:none) Homo sapiens cDNA FLJ52415 complet... 62 8e-08
AK169372_1(AK169372|pid:none) Mus musculus 17 days embryo kidney... 62 8e-08
(P35123) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ... 62 8e-08
AK163201_1(AK163201|pid:none) Mus musculus 7 days neonate cerebe... 62 8e-08
AF026469_1(AF026469|pid:none) Mus musculus ubiquitin-specific pr... 62 8e-08
(P62068) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 46;... 62 8e-08
CP001142_248(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 62 8e-08
I58376(I58376)hypothetical protein unp - mouse 62 8e-08
CR382136_811(CR382136|pid:none) Debaryomyces hansenii strain CBS... 62 8e-08
BC066180_1(BC066180|pid:none) Mus musculus ubiquitin specific pe... 61 1e-07
AJ720146_1(AJ720146|pid:none) Gallus gallus mRNA for hypothetica... 61 1e-07
FM992688_1282(FM992688|pid:none) Candida dubliniensis CD36 chrom... 61 1e-07
(P32571) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ... 61 1e-07
(Q9C585) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; ... 61 1e-07
AK022614_1(AK022614|pid:none) Homo sapiens cDNA FLJ12552 fis, cl... 61 1e-07
BC166460_1(BC166460|pid:none) Rattus norvegicus ubiquitin specif... 61 1e-07
AF327414_1(AF327414|pid:none) Aspergillus nidulans CREB (creB) g... 61 1e-07
FB914692_1(FB914692|pid:none) Sequence 133965 from Patent WO2008... 61 1e-07
BT076091_1(BT076091|pid:none) Caligus rogercresseyi clone crog-e... 61 1e-07
AY148453_1(AY148453|pid:none) Mus musculus deubiquitinating enzy... 61 1e-07
AK296493_1(AK296493|pid:none) Homo sapiens cDNA FLJ58777 complet... 61 1e-07
Z29095_5(Z29095|pid:none) Caenorhabditis elegans Cosmid R10E11, ... 61 1e-07
S40715(S40715)hypothetical protein R10E11.3 - Caenorhabditis ele... 61 1e-07
CR382136_920(CR382136|pid:none) Debaryomyces hansenii chromosome... 61 1e-07
FN392319_751(FN392319|pid:none) Pichia pastoris GS115 chromosome... 61 1e-07
BC026072_1(BC026072|pid:none) Homo sapiens ubiquitin specific pe... 61 1e-07
FN392321_618(FN392321|pid:none) Pichia pastoris GS115 chromosome... 61 1e-07
(Q7RTZ2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17-... 60 2e-07
L08070_1(L08070|pid:none) Saccharomyces cerevisiae vacuole bioge... 60 2e-07
BC125131_1(BC125131|pid:none) Homo sapiens ubiquitin specific pe... 60 2e-07
AF022789_1(AF022789|pid:none) Homo sapiens ubiquitin hydrolyzing... 60 2e-07
BT030596_1(BT030596|pid:none) Bos taurus ubiquitin specific pept... 60 2e-07
AF017306_1(AF017306|pid:none) Homo sapiens deubiquitinating enzy... 60 2e-07
T09478(T09478) ubiquitin thiolesterase (EC 3.1.2.15) - human &U... 60 2e-07
(A6QR55) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ... 60 2e-07
AL953864_3(AL953864|pid:none) Zebrafish DNA sequence from clone ... 60 2e-07
BC094130_1(BC094130|pid:none) Xenopus laevis hypothetical protei... 60 2e-07
(Q13107) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ... 60 2e-07
AK223292_1(AK223292|pid:none) Homo sapiens mRNA for ubiquitin sp... 60 2e-07
CP000581_329(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 60 2e-07
(A6NCW0) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17-... 60 2e-07
AL049523_5(AL049523|pid:none) Arabidopsis thaliana DNA chromosom... 60 2e-07
CP000496_987(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 60 2e-07
AY190953_3(AY190953|pid:none) Drosophila virilis clone DVIF01_19... 54 3e-07
AF441835_1(AF441835|pid:none) Mus musculus deubiquitinating enzy... 60 3e-07
CR380953_216(CR380953|pid:none) Candida glabrata strain CBS138 c... 60 3e-07
BC049274_1(BC049274|pid:none) Mus musculus ubiquitin specific pe... 60 3e-07
CU633438_423(CU633438|pid:none) Podospora anserina genomic DNA c... 60 3e-07
AM502253_188(AM502253|pid:none) Leishmania infantum chromosome 35. 60 3e-07
CP000593_1(CP000593|pid:none) Ostreococcus lucimarinus CCE9901 c... 60 3e-07
(Q6P8X6) RecName: Full=Putative ubiquitin carboxyl-terminal hydr... 60 3e-07
(Q9D9M2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 12;... 60 3e-07
AC160629_6(AC160629|pid:none) Medicago truncatula clone mth2-24p... 59 4e-07
FB914698_1(FB914698|pid:none) Sequence 133971 from Patent WO2008... 59 4e-07
CR954201_301(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 59 4e-07
(Q4R6D3) RecName: Full=Putative ubiquitin carboxyl-terminal hydr... 59 4e-07
CU928174_137(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 59 4e-07
AB070143_1(AB070143|pid:none) Macaca fascicularis testis cDNA cl... 59 5e-07
AE016819_240(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 59 5e-07
AE016819_860(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 59 5e-07
AM494971_164(AM494971|pid:none) Leishmania braziliensis chromoso... 59 5e-07
(Q5RCD3) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ... 59 5e-07
(Q9ZSB5) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 10;... 59 5e-07
AE017345_169(AE017345|pid:none) Cryptococcus neoformans var. neo... 59 7e-07
(Q9FPS2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 25;... 59 7e-07
(P0C7H9) RecName: Full=Inactive ubiquitin carboxyl-terminal hydr... 59 7e-07
AY064992_1(AY064992|pid:none) Arabidopsis thaliana AT3g14400/MLN... 59 7e-07
BC025317_1(BC025317|pid:none) Homo sapiens ubiquitin specific pe... 57 8e-07
AM481020_3(AM481020|pid:none) Vitis vinifera contig VV78X251561.... 58 9e-07
AY815601_1(AY815601|pid:none) Schistosoma japonicum SJCHGC05977 ... 58 9e-07
CU928166_416(CU928166|pid:none) Kluyveromyces thermotolerans str... 58 1e-06
AJ720494_1(AJ720494|pid:none) Gallus gallus mRNA for hypothetica... 58 1e-06
BX908749_1(BX908749|pid:none) Zebrafish DNA sequence from clone ... 58 1e-06
B84639(B84639)probable ubiquitin carboxyl terminal hydrolase [im... 54 1e-06
(Q9SJA1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19;... 54 1e-06
AK319102_1(AK319102|pid:none) Arabidopsis thaliana AT2G24640 mRN... 54 1e-06
AM494964_139(AM494964|pid:none) Leishmania braziliensis chromoso... 57 2e-06
BC144041_1(BC144041|pid:none) Homo sapiens ubiquitin specific pe... 57 2e-06
CP000584_193(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 57 2e-06
BC066557_1(BC066557|pid:none) Danio rerio ubiquitin specific pep... 57 2e-06
BX649634_3(BX649634|pid:none) Zebrafish DNA sequence from clone ... 57 2e-06
CU928176_298(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 57 2e-06
(Q01988) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 11;... 57 2e-06
CR857421_1(CR857421|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1... 57 2e-06
BC081032_1(BC081032|pid:none) Xenopus laevis MGC81700 protein, m... 57 3e-06
(Q9WTV6) RecName: Full=Ubl carboxyl-terminal hydrolase 18; ... 57 3e-06
FM992689_911(FM992689|pid:none) Candida dubliniensis CD36 chromo... 57 3e-06
AL953864_4(AL953864|pid:none) Zebrafish DNA sequence from clone ... 57 3e-06
(Q9UTT1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 21;... 57 3e-06
CR382135_549(CR382135|pid:none) Debaryomyces hansenii strain CBS... 57 3e-06
(Q569C3) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 1; ... 56 3e-06
BC020007_1(BC020007|pid:none) Mus musculus ubiquitin specific pe... 56 3e-06
AM494969_316(AM494969|pid:none) Leishmania braziliensis chromoso... 56 3e-06
AB208893_1(AB208893|pid:none) Homo sapiens mRNA for ubiquitin sp... 56 3e-06
AK312423_1(AK312423|pid:none) Homo sapiens cDNA, FLJ92762, highl... 56 3e-06
(Q8BJQ2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 1; ... 56 3e-06
BC018179_1(BC018179|pid:none) Mus musculus ubiquitin specific pe... 56 3e-06
AF117386_1(AF117386|pid:none) Homo sapiens ubiquitin-specific pr... 56 3e-06
(Q29RP1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 1; ... 56 3e-06
AM474579_3(AM474579|pid:none) Vitis vinifera contig VV78X054901.... 56 3e-06
AK127075_1(AK127075|pid:none) Homo sapiens cDNA FLJ45132 fis, cl... 56 5e-06
(Q9UPU5) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 24;... 56 5e-06
BX927184_4(BX927184|pid:none) Zebrafish DNA sequence from clone ... 56 5e-06
AC157349_7(AC157349|pid:none) Medicago truncatula clone mth2-139... 56 5e-06
(B1AY13) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 24;... 56 5e-06
BC160138_1(BC160138|pid:none) Synthetic construct Homo sapiens c... 56 5e-06
CT010228_1(CT010228|pid:none) Mus musculus full open reading fra... 56 5e-06
CU928179_275(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 56 5e-06
CU640366_1255(CU640366|pid:none) Podospora anserina genomic DNA ... 56 5e-06
(B2GUX4) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 21;... 56 5e-06
AK152034_1(AK152034|pid:none) Mus musculus bone marrow macrophag... 55 6e-06
AK149772_1(AK149772|pid:none) Mus musculus bone marrow macrophag... 55 6e-06
(Q9MAQ3) RecName: Full=Putative ubiquitin carboxyl-terminal hydr... 55 6e-06
AE016820_14(AE016820|pid:none) Ashbya gossypii (= Eremothecium g... 55 6e-06
AC006424_5(AC006424|pid:none) Arabidopsis thaliana chromosome I ... 55 6e-06
BC138562_1(BC138562|pid:none) Mus musculus ubiquitin specific pe... 55 6e-06
AP007155_332(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 52 6e-06
AK151011_1(AK151011|pid:none) Mus musculus bone marrow macrophag... 55 8e-06
(Q9UK80) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 21;... 55 8e-06
BC090946_1(BC090946|pid:none) Homo sapiens ubiquitin specific pe... 55 8e-06
(Q9QZL6) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 21;... 55 1e-05
FN357292_90(FN357292|pid:none) Schistosoma mansoni genome sequen... 55 1e-05
BT039173_1(BT039173|pid:none) Zea mays full-length cDNA clone ZM... 55 1e-05
CR382139_668(CR382139|pid:none) Debaryomyces hansenii strain CBS... 55 1e-05
(Q9Y2K6) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 20;... 55 1e-05
AB385416_1(AB385416|pid:none) Synthetic construct DNA, clone: pF... 55 1e-05
AK011148_1(AK011148|pid:none) Mus musculus 10 days embryo whole ... 55 1e-05
BC039593_1(BC039593|pid:none) Homo sapiens ubiquitin specific pe... 55 1e-05
CP000582_157(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 55 1e-05
AE017341_729(AE017341|pid:none) Cryptococcus neoformans var. neo... 51 1e-05
(Q8TEY7) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 33;... 54 1e-05
BC016663_1(BC016663|pid:none) Homo sapiens ubiquitin specific pe... 54 1e-05
AB385425_1(AB385425|pid:none) Synthetic construct DNA, clone: pF... 54 1e-05
AK173083_1(AK173083|pid:none) Mus musculus mRNA for mKIAA1003 pr... 54 1e-05
FN357295_42(FN357295|pid:none) Schistosoma mansoni genome sequen... 54 1e-05
AF449715_1(AF449715|pid:none) Mus musculus pVHL-interacting deub... 54 1e-05
AP007171_732(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 54 1e-05
BC146302_1(BC146302|pid:none) Synthetic construct Mus musculus c... 54 2e-05
BC148905_1(BC148905|pid:none) Bos taurus ubiquitin specific pept... 54 2e-05
AE014187_142(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 54 2e-05
BC049870_1(BC049870|pid:none) Mus musculus ubiquitin specific pe... 54 2e-05
BC125749_1(BC125749|pid:none) Xenopus tropicalis ubiquitin speci... 54 2e-05
CR860104_1(CR860104|pid:none) Pongo abelii mRNA; cDNA DKFZp468P1... 54 2e-05
(Q9VYQ8) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 7; ... 54 2e-05
EU617333_1(EU617333|pid:none) Sus scrofa interferon-stimulated g... 54 2e-05
BC089315_1(BC089315|pid:none) Mus musculus ubiquitin specific pe... 54 2e-05
CR926290_1(CR926290|pid:none) Xenopus tropicalis finished cDNA, ... 54 2e-05
BC031366_1(BC031366|pid:none) Mus musculus ubiquitin specific pe... 54 2e-05
BC005506_1(BC005506|pid:none) Mus musculus ubiquitin specific pe... 54 2e-05
AF383174_1(AF383174|pid:none) Mus musculus pVHL-interacting deub... 54 2e-05
AK143844_1(AK143844|pid:none) Mus musculus 6 days neonate spleen... 54 2e-05
T23531(T23531)hypothetical protein K09A9.4 - Caenorhabditis eleg... 54 2e-05
FN357409_12(FN357409|pid:none) Schistosoma mansoni genome sequen... 54 2e-05
BC045507_1(BC045507|pid:none) Danio rerio ubiquitin specific pro... 53 3e-05
(Q3LFD5) RecName: Full=Putative ubiquitin carboxyl-terminal hydr... 53 3e-05
AC016795_20(AC016795|pid:none) Arabidopsis thaliana chromosome I... 53 3e-05
CR457216_1(CR457216|pid:none) Homo sapiens full open reading fra... 53 3e-05
CP001329_394(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 53 3e-05
AC144430_16(AC144430|pid:none) Medicago truncatula clone mth2-16... 53 3e-05
(Q9UMW8) RecName: Full=Ubl carboxyl-terminal hydrolase 18; ... 53 3e-05
AK226819_1(AK226819|pid:none) Arabidopsis thaliana mRNA for ubiq... 53 3e-05
AF118222_6(AF118222|pid:none) Arabidopsis thaliana BAC F3H7. 53 3e-05
AY891610_1(AY891610|pid:none) Synthetic construct Homo sapiens c... 53 3e-05
AY118676_1(AY118676|pid:none) Drosophila melanogaster AT06247 fu... 53 3e-05
AL844508_46(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 53 3e-05
AJ586979_1(AJ586979|pid:none) Homo sapiens partial mRNA for ubiq... 53 3e-05
(Q84WU2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 13;... 53 3e-05
AE013599_1950(AE013599|pid:none) Drosophila melanogaster chromos... 53 3e-05
FN392322_17(FN392322|pid:none) Pichia pastoris GS115 chromosome ... 53 3e-05
BC055398_1(BC055398|pid:none) Mus musculus ubiquitin specific pe... 53 4e-05
CR382137_138(CR382137|pid:none) Debaryomyces hansenii strain CBS... 53 4e-05
AB170626_1(AB170626|pid:none) Macaca fascicularis brain cDNA clo... 53 4e-05
T30979(T30979) hypothetical protein T22F3.2 - Caenorhabditis ele... 53 4e-05
AY144873_1(AY144873|pid:none) Saccharomyces bayanus clone Contig... 52 5e-05
AX510733_1(AX510733|pid:none) Sequence 9 from Patent WO0231205. 52 5e-05
B49132(B49132;A49132) fat facets (faf) splice form 1 - fruit fly... 52 5e-05
(P55824) RecName: Full=Probable ubiquitin carboxyl-terminal hydr... 52 5e-05
AE014297_5000(AE014297|pid:none) Drosophila melanogaster chromos... 52 5e-05
L04960_1(L04960|pid:none) Drosophila melanogaster fat facets (fa... 52 5e-05
AF302663_1(AF302663|pid:none) Arabidopsis thaliana ubiquitin-spe... 52 7e-05
AF360198_1(AF360198|pid:none) Arabidopsis thaliana putative ubiq... 52 7e-05
(Q9FPT1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 12;... 52 7e-05
DQ291157_1(DQ291157|pid:none) Carassius auratus ubiquitin specif... 52 7e-05
AP002543_13(AP002543|pid:none) Arabidopsis thaliana genomic DNA,... 52 7e-05
(Q9FPS9) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15;... 52 7e-05
BC172601_1(BC172601|pid:none) Synthetic construct Mus musculus c... 52 9e-05
AP008218_884(AP008218|pid:none) Oryza sativa (japonica cultivar-... 52 9e-05
FJ532267_1(FJ532267|pid:none) Gorilla gorilla isolate PR00573 ub... 52 9e-05
Y13619_1(Y13619|pid:none) Homo sapiens mRNA for DFFRY protein, r... 52 9e-05
AP008207_2653(AP008207|pid:none) Oryza sativa (japonica cultivar... 52 9e-05
CU928173_247(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 52 9e-05
AM502245_88(AM502245|pid:none) Leishmania infantum chromosome 27. 52 9e-05
Y13618_1(Y13618|pid:none) Homo sapiens mRNA for DFFRY protein, a... 52 9e-05
CP001331_142(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 51 1e-04
FN357450_44(FN357450|pid:none) Schistosoma mansoni genome sequen... 51 1e-04
AE017348_101(AE017348|pid:none) Cryptococcus neoformans var. neo... 51 1e-04
DQ294030_1(DQ294030|pid:none) Salmo salar ubiquitin-specific pep... 51 1e-04
AK126752_1(AK126752|pid:none) Homo sapiens cDNA FLJ44799 fis, cl... 51 1e-04
FN318888_1(FN318888|pid:none) Schistosoma japonicum isolate Anhu... 51 1e-04
(Q70CQ4) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 31;... 51 1e-04
AJ586135_1(AJ586135|pid:none) Homo sapiens mRNA for ubiquitin-sp... 51 1e-04
(Q67XW5) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 18;... 47 2e-04
(Q91X25) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 47;... 50 2e-04
AK041541_1(AK041541|pid:none) Mus musculus 3 days neonate thymus... 50 2e-04
AK092290_1(AK092290|pid:none) Homo sapiens cDNA FLJ34971 fis, cl... 50 2e-04
AK151051_1(AK151051|pid:none) Mus musculus bone marrow macrophag... 50 2e-04
BC108425_1(BC108425|pid:none) Mus musculus ubiquitin specific pe... 50 2e-04
(Q70EL3) RecName: Full=Inactive ubiquitin carboxyl-terminal hydr... 50 2e-04
CR380953_103(CR380953|pid:none) Candida glabrata strain CBS138 c... 50 2e-04
AK027362_1(AK027362|pid:none) Homo sapiens cDNA FLJ14456 fis, cl... 50 2e-04
CR382128_569(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 50 2e-04
BC148587_1(BC148587|pid:none) Synthetic construct Homo sapiens c... 50 2e-04
(Q96K76) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 47;... 50 2e-04
AP004664_14(AP004664|pid:none) Oryza sativa Japonica Group genom... 50 2e-04
AB172289_1(AB172289|pid:none) Macaca fascicularis brain cDNA clo... 50 2e-04
AL669967_1(AL669967|pid:none) Mouse DNA sequence from clone RP23... 50 2e-04
(P70398) RecName: Full=Probable ubiquitin carboxyl-terminal hydr... 50 2e-04
DQ086491_1(DQ086491|pid:none) Mus musculus ubiquitin specific pr... 50 2e-04
Z47812_1(Z47812|pid:none) Caenorhabditis elegans Cosmid T05H10, ... 50 2e-04
AK122442_1(AK122442|pid:none) Mus musculus premature mRNA for mK... 50 3e-04
BC128636_1(BC128636|pid:none) Xenopus tropicalis hypothetical pr... 50 3e-04
(Q93008) RecName: Full=Probable ubiquitin carboxyl-terminal hydr... 50 3e-04
AK303463_1(AK303463|pid:none) Homo sapiens cDNA FLJ59031 complet... 50 3e-04
BC172429_1(BC172429|pid:none) Synthetic construct Homo sapiens c... 50 3e-04
FJ627275_1(FJ627275|pid:none) Bos taurus Usp9y mRNA, complete cds. 49 6e-04
FJ195366_1(FJ195366|pid:none) Bos taurus Y-linked ubiquitin-spec... 49 6e-04
EF100424_1(EF100424|pid:none) Plasmodium chabaudi strain AS-ART ... 49 6e-04
(Q9USM5) RecName: Full=Probable ubiquitin carboxyl-terminal hydr... 48 0.001
AY144975_1(AY144975|pid:none) Saccharomyces castellii clone Cont... 48 0.001
(Q08DA3) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 16;... 48 0.001
AL844506_255(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 48 0.001
(Q99LG0) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 16;... 48 0.001
T20528(T20528) hypothetical protein F07A11.4 - Caenorhabditis el... 48 0.001
(P39944) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ... 48 0.001
BC004577_1(BC004577|pid:none) Mus musculus ubiquitin specific pe... 48 0.001
AM502242_27(AM502242|pid:none) Leishmania infantum chromosome 24. 48 0.001
BC084261_1(BC084261|pid:none) Xenopus laevis ubiquitin specific ... 47 0.002
CP000591_198(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 47 0.002
CR382129_97(CR382129|pid:none) Yarrowia lipolytica strain CLIB12... 47 0.002
AL844504_164(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 46 0.004
BC136368_1(BC136368|pid:none) Homo sapiens ubiquitin specific pe... 46 0.004
BC129040_1(BC129040|pid:none) Danio rerio zgc:153999, mRNA (cDNA... 46 0.005
AF302665_1(AF302665|pid:none) Arabidopsis thaliana ubiquitin-spe... 46 0.005
AP008214_1559(AP008214|pid:none) Oryza sativa (japonica cultivar... 46 0.005
AK023247_1(AK023247|pid:none) Homo sapiens cDNA FLJ13185 fis, cl... 46 0.005
DQ892395_1(DQ892395|pid:none) Synthetic construct clone IMAGE:10... 46 0.005
AL035476_11(AL035476|pid:none) Plasmodium falciparum MAL4P3. &A... 46 0.005
AK222884_1(AK222884|pid:none) Homo sapiens mRNA for ubiquitin sp... 46 0.005

>AY127002_1(AY127002|pid:none) Arabidopsis thaliana
AT4g30890/F6I18_200 mRNA, complete cds.
&BT000568_1(BT000568|pid:none)
Length = 276

Score = 160 bits (406), Expect = 1e-37
Identities = 92/237 (38%), Positives = 138/237 (58%), Gaps = 5/237 (2%)
Frame = +2

Query: 941 QQDAQGFLVFLLDLIHEEFLTLXXXXXXXXXXXXSTPTSTSIVDDNWEVVGKKGKTAIIT 1120
Q+DAQ FL F++D +H+E L L S +S + D WE VG K K+A+ T
Sbjct: 23 QEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGDEWETVGPKNKSAV-T 81

Query: 1121 NSQQELPKTPISQIFSGVLRSSFNRTGSKESITVEPFYCLHLDIRPEEINSLEDALKFFM 1300
+Q +P + +S+IF G L+S G+K S TV+P+ LHLDI P+ + +EDAL F
Sbjct: 82 RTQSFVP-SELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPDGVQGIEDALHLFS 140

Query: 1301 KPEIIEGYTCST--KKIEISASKSWSFESLPRILIVHFKRFAFESDTSKKLDKLIRFPTQ 1474
E +EGY S K +SASKS + L +I+I+H RF++ S S KL K ++FP +
Sbjct: 141 AQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLE 200

Query: 1475 LSLSTA---SNHQTQKKYSLFSVVSHHGRGLSQGHYTCDIYQPQQAQWIRYDDSTFT 1636
L+L+ + S +Y L + ++HHG S+GHYT D + + QW+R+DD++ T
Sbjct: 201 LNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDA-RRKNGQWLRFDDASVT 256

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,881,251,081
Number of extensions: 31367481
Number of successful extensions: 77685
Number of sequences better than 10.0: 691
Number of HSP's gapped: 77157
Number of HSP's successfully gapped: 765
Length of query: 562
Length of database: 1,040,966,779
Length adjustment: 134
Effective length of query: 428
Effective length of database: 611,592,589
Effective search space: 261761628092
Effective search space used: 261761628092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.90 gvh: 0.48 alm: 0.33 top: 0.33 tms: 0.00 mit: 0.47 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
20.0 %: mitochondrial
20.0 %: cytoplasmic
4.0 %: vesicles of secretory system

>> prediction for Contig-U10018-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0