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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09928-1
Contig ID Contig-U09928-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09928-1 (Contig-U09928-1Q) /CSM_Contig/Contig-U09928-1Q.Seq.d
CAGAAACTGACCTTAAGAGTACTCCTTCGAAACAATTTTGAGTGGTTGTT
AGTAAGGCTTTTTCTGGCAAAAAGAGAAATTAGAGAGAGATCTTTAAACA
ACTGGGTTTAGAAATTCTATGATCATTTCGGTTGTGCCAAGATCTCACAT
AAAAAATTTTTTATTTCCAAATTACAATGAAAAGATTTATTTCAACAACA
AGTTTACGTGTTTTATCAAATTTAAATAAAAACAATAACAATAACAACAA
GTTTAACAAATCAATTGTTGGAGTATTCAATAGAGAATTCTCAAGTTCAA
ATGAAGGATTAAATAAAGTTAATTTTGGTGAAAATAATAACTCATCCACC
ACTGAACCAACTAAAGTATTATTTAACGATTCACAATTTTATCAAGAGGA
TAAATATCAAGGTATTTCAAAAGAACCATTTAGTAAAGAGATTGTTGATA
CTTTATTAGCAGATTTAAATCCAGACGATATTGAAATCAAACCAGATGGT
TTAATTTATTTACCAGAGATCAAATATAGACGTATTTTAAATCAAGCATT
CGGACCAGGAGGTTGGGCATTAAAACCATTCGGACCACCAGTTGTCGAGG
GTAAAACATTGATTAGACCTTATGCACTCTATTGTTTAGGTAGATATGTA
GCCCGAATCCATTGGTGAGCAACAATACGTTCCCAAATTCATTCATTTCA
TTTGCCACCGCCACTGAATCTGCTAAATCCAATGCATTGGTTCGTTGTTG
TAAAGATTTAGGTATTGGCTCAAGTCTTTGGGATCCAATTTTCATTCGTC
AATGGAAATCTGAATATGCCACAGAGAGATGGTGTGAAAATTCAAAAACA
AAAGAAAGACGTTTGTTTTGGTTCCTTTCAAATCGTTCAGAAAATCAACT
TCCATATCCATGGAAAGAATCTGATTTTAATCAAGTACCATCAAATTCAT
CATATTCATCATCATCATCATCAATAAATAACAATAGTAATAGTAGTAAT
AATAATAATAATAATAGTGATTCATCATCTTCAATAAATCAACCACAACA
AGAAACAATTTCATATCATCAAGATGATTCATCTTCACCATCATCAAAAA
TTACAGAACAACAAGATGATTCAGAAGATATTGATATCGATGATGTAGTA
CCACCACAATTAAAGAAATATGCAGGTAAAACATGGAGACAACTTGTTGC
TGATCCAAAAGGTCTTAGTTATTTACAATGGGCTTCTTCATCATTCGATA
ATGCCCCCAAAATTAAAAGTCAAGCAACTGCAATTTTAGAATTTATCAAT
AAAAGTCAATAAATTATTAAAATTTTAAAAAAAATAAAATTACTTTTTTA
TTTTTAT
Gap no gap
Contig length 1357
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 8104285
End point 8105490
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 6
Link to clone list U09928
List of clone(s) 

est1=AFE142F,1,585
est2=VFN410E,135,1332
est3=VFF236E,152,1339
est4=AFC765E,153,1354
est5=VSE133Z,734,1328
est6=AFE142Z,781,1358
Translated Amino Acid sequence 
rn*p*eysfetilsgc**gffwqkeklerdl*ttgfrnsmiisvvprshiknflfpnyne
kiyfnnkftcfikfk*kq*q*qqv*qincwsiq*rilkfk*rik*s*fw*k**lihh*tn
*sii*rftilsrg*isryfkrti**rdc*yfisrfksrry*nqtrwfnlftrdqi*tyfk
ssirtrrlgiktirttscrg*nid*tlctllfr*ICSPNPLVSNNTFPNSFISFATATES
AKSNALVRCCKDLGIGSSLWDPIFIRQWKSEYATERWCENSKTKERRLFWFLSNRSENQL
PYPWKESDFNQVPSNSSYSSSSSSINNNSNSSNNNNNNSDSSSSINQPQQETISYHQDDS
SSPSSKITEQQDDSEDIDIDDVVPPQLKKYAGKTWRQLVADPKGLSYLQWASSSFDNAPK
IKSQATAILEFINKSQ*iikilkkikllfyfy
Translated Amino Acid sequence (All Frames) 
Frame A:
qkltlrvllrnnfewllvrlflakreirerslnnwv*kfydhfgcakishkkffisklq*
kdlfqqqvyvfyqi*iktitittsltnqlleysiensqvqmkd*iklilvkiithpplnq
lkyyltihnfikrinikvfqknhlvkrllily*qi*iqtilksnqmv*fiyqrsnidvf*
ikhsdqevgh*nhsdhqlsrvkh*ldlmhsiv*vdm*pesigeqqyvpkfihfichrh*i
c*iqcigsll*rfrywlkslgsnfhssmei*ichremv*kfknkrktfvlvpfksfrkst
sismeri*f*sstikfiifiiiiink*q************fiifnkstttrnnfissr*f
iftiiknyrttr*frry*yr*cstttikeicr*nmettcc*skrs*lftmgffiir*cpq
n*kssncnfriyq*ksiny*nfkknkitflfl


Frame B:
rn*p*eysfetilsgc**gffwqkeklerdl*ttgfrnsmiisvvprshiknflfpnyne
kiyfnnkftcfikfk*kq*q*qqv*qincwsiq*rilkfk*rik*s*fw*k**lihh*tn
*sii*rftilsrg*isryfkrti**rdc*yfisrfksrry*nqtrwfnlftrdqi*tyfk
ssirtrrlgiktirttscrg*nid*tlctllfr*ICSPNPLVSNNTFPNSFISFATATES
AKSNALVRCCKDLGIGSSLWDPIFIRQWKSEYATERWCENSKTKERRLFWFLSNRSENQL
PYPWKESDFNQVPSNSSYSSSSSSINNNSNSSNNNNNNSDSSSSINQPQQETISYHQDDS
SSPSSKITEQQDDSEDIDIDDVVPPQLKKYAGKTWRQLVADPKGLSYLQWASSSFDNAPK
IKSQATAILEFINKSQ*iikilkkikllfyfy


Frame C:
etdlkstpskqf*vvvskafsgkkrn*reifkqlgleil*sfrlcqdlt*kifyfqitmk
rfisttslrvlsnlnknnnnnnkfnksivgvfnrefsssneglnkvnfgennnssttept
kvlfndsqfyqedkyqgiskepfskeivdtlladlnpddieikpdgliylpeikyrriln
qafgpggwalkpfgppvvegktlirpyalyclgryvarihw*atirsqihsfhlppplnl
lnpmhwfvvvki*vlaqvfgiqfsfvngnlnmpqrdgvkiqkqkkdvcfgsfqivqkinf
hihgknlilikyhqihhihhhhhq*itivivviiiiiivihhlq*inhnkkqfhiikmih
lhhhqklqnnkmiqkilismm*yhhn*rnmqvkhgdnllliqkvlviyngllhhsimppk
lkvkqlqf*nlsikvnkllkf*kk*nyffif
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09928-1 (Contig-U09928-1Q)
/CSM_Contig/Contig-U09928-1Q.Seq.d
         (1357 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09928-1 (Contig-U09928-1Q) /CSM_Contig/Conti...  1859  0.0
Contig-U01618-1 (Contig-U01618-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U09102-1 (Contig-U09102-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12593-1 (Contig-U12593-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12071-1 (Contig-U12071-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11808-1 (Contig-U11808-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U05483-1 (Contig-U05483-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14831-1 (Contig-U14831-1Q) /CSM_Contig/Conti...    38  0.024

>Contig-U09928-1 (Contig-U09928-1Q) /CSM_Contig/Contig-U09928-1Q.Seq.d
          Length = 1357

 Score = 1859 bits (938), Expect = 0.0
 Identities = 938/938 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaactgaccttaagagtactccttcgaaacaattttgagtggttgttagtaaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagaaactgaccttaagagtactccttcgaaacaattttgagtggttgttagtaaggctt 60

                                                                       
Query: 61  tttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattctat 120

                                                                       
Query: 121 gatcatttcggttgtgccaagatctcacataaaaaattttttatttccaaattacaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatcatttcggttgtgccaagatctcacataaaaaattttttatttccaaattacaatga 180

                                                                       
Query: 181 aaagatttatttcaacaacaagtttacgtgttttatcaaatttaaataaaaacaataaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagatttatttcaacaacaagtttacgtgttttatcaaatttaaataaaaacaataaca 240

                                                                       
Query: 241 ataacaacaagtttaacaaatcaattgttggagtattcaatagagaattctcaagttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataacaacaagtttaacaaatcaattgttggagtattcaatagagaattctcaagttcaa 300

                                                                       
Query: 301 atgaaggattaaataaagttaattttggtgaaaataataactcatccaccactgaaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgaaggattaaataaagttaattttggtgaaaataataactcatccaccactgaaccaa 360

                                                                       
Query: 361 ctaaagtattatttaacgattcacaattttatcaagaggataaatatcaaggtatttcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctaaagtattatttaacgattcacaattttatcaagaggataaatatcaaggtatttcaa 420

                                                                       
Query: 421 aagaaccatttagtaaagagattgttgatactttattagcagatttaaatccagacgata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagaaccatttagtaaagagattgttgatactttattagcagatttaaatccagacgata 480

                                                                       
Query: 481 ttgaaatcaaaccagatggtttaatttatttaccagagatcaaatatagacgtattttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgaaatcaaaccagatggtttaatttatttaccagagatcaaatatagacgtattttaa 540

                                                                       
Query: 541 atcaagcattcggaccaggaggttgggcattaaaaccattcggaccaccagttgtcgagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcaagcattcggaccaggaggttgggcattaaaaccattcggaccaccagttgtcgagg 600

                                                                       
Query: 601 gtaaaacattgattagaccttatgcactctattgtttaggtagatatgtagcccgaatcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtaaaacattgattagaccttatgcactctattgtttaggtagatatgtagcccgaatcc 660

                                                                       
Query: 661 attggtgagcaacaatacgttcccaaattcattcatttcatttgccaccgccactgaatc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 attggtgagcaacaatacgttcccaaattcattcatttcatttgccaccgccactgaatc 720

                                                                       
Query: 721 tgctaaatccaatgcattggttcgttgttgtaaagatttaggtattggctcaagtctttg 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgctaaatccaatgcattggttcgttgttgtaaagatttaggtattggctcaagtctttg 780

                                                                       
Query: 781 ggatccaattttcattcgtcaatggaaatctgaatatgccacagagagatggtgtgaaaa 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggatccaattttcattcgtcaatggaaatctgaatatgccacagagagatggtgtgaaaa 840

                                                                       
Query: 841 ttcaaaaacaaaagaaagacgtttgttttggttcctttcaaatcgttcagaaaatcaact 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttcaaaaacaaaagaaagacgtttgttttggttcctttcaaatcgttcagaaaatcaact 900

                                                 
Query: 901 tccatatccatggaaagaatctgattttaatcaagtac 938
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tccatatccatggaaagaatctgattttaatcaagtac 938


 Score =  615 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1017 gtgattcatcatcttcaataaatcaaccacaacaagaaacaatttcatatcatcaagatg 1076
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 gtgattcatcatcttcaataaatcaaccacaacaagaaacaatttcatatcatcaagatg 1076

                                                                        
Query: 1077 attcatcttcaccatcatcaaaaattacagaacaacaagatgattcagaagatattgata 1136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 attcatcttcaccatcatcaaaaattacagaacaacaagatgattcagaagatattgata 1136

                                                                        
Query: 1137 tcgatgatgtagtaccaccacaattaaagaaatatgcaggtaaaacatggagacaacttg 1196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 tcgatgatgtagtaccaccacaattaaagaaatatgcaggtaaaacatggagacaacttg 1196

                                                                        
Query: 1197 ttgctgatccaaaaggtcttagttatttacaatgggcttcttcatcattcgataatgccc 1256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 ttgctgatccaaaaggtcttagttatttacaatgggcttcttcatcattcgataatgccc 1256

                                                                        
Query: 1257 ccaaaattaaaagtcaagcaactgcaattttagaatttatcaataaaagtcaataaatta 1316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 ccaaaattaaaagtcaagcaactgcaattttagaatttatcaataaaagtcaataaatta 1316

                      
Query: 1317 ttaaaatttt 1326
            ||||||||||
Sbjct: 1317 ttaaaatttt 1326


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 149 ataaaaaattttttat 164
           ||||||||||||||||
Sbjct: 164 ataaaaaattttttat 149


>Contig-U01618-1 (Contig-U01618-1Q) /CSM_Contig/Contig-U01618-1Q.Seq.d
          Length = 254

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 222 ttaaataaaaacaataacaataacaa 247
           |||||||| |||||||||||||||||
Sbjct: 188 ttaaataataacaataacaataacaa 213


>Contig-U09102-1 (Contig-U09102-1Q) /CSM_Contig/Contig-U09102-1Q.Seq.d
          Length = 1163

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 227 taaaaacaataacaataacaa 247
           |||||||||||||||||||||
Sbjct: 20  taaaaacaataacaataacaa 40


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,917
Number of Sequences: 6905
Number of extensions: 24917
Number of successful extensions: 3302
Number of sequences better than 10.0: 455
length of query: 1357
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1341
effective length of database: 5,564,391
effective search space: 7461848331
effective search space used: 7461848331
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA 
Query= Contig-U09928-1 (Contig-U09928-1Q) /CSM_Contig/Contig-U09928-1Q.Seq.d
         (1357 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ325020) Dictyostelium discoideum cDNA clone:dda9c11, 5' e...  1160   0.0    1
(BJ324478) Dictyostelium discoideum cDNA clone:dda6b17, 5' e...  1051   0.0    1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...   993   0.0    3
(BJ416704) Dictyostelium discoideum cDNA clone:ddv27d04, 5' ...   993   0.0    3
(BJ410128) Dictyostelium discoideum cDNA clone:ddv11g10, 5' ...   993   0.0    3
(BJ341398) Dictyostelium discoideum cDNA clone:dda6b17, 3' e...   567   0.0    3
(BJ435406) Dictyostelium discoideum cDNA clone:ddv27d04, 3' ...   553   0.0    4
(BJ428268) Dictyostelium discoideum cDNA clone:ddv11g10, 3' ...   553   0.0    3
(AU262895) Dictyostelium discoideum vegetative cDNA clone:VS...   553   0.0    2
(BJ342041) Dictyostelium discoideum cDNA clone:dda9c11, 3' e...   553   0.0    2
(BJ413318) Dictyostelium discoideum cDNA clone:ddv15g01, 5' ...   274   8e-69  1
(BJ410192) Dictyostelium discoideum cDNA clone:ddv11g14, 5' ...   274   8e-69  1
(BJ394909) Dictyostelium discoideum cDNA clone:dds36o19, 5' ...   133   2e-26  1
(DY893374) CeleSEQ12698 Cunninghamella elegans pBluescript (...    94   4e-15  2
(DY886989) CeleSEQ2839 Cunninghamella elegans pBluescript (E...    94   4e-15  2
(U43558) Kluyveromyces lactis mitochondrial genome maintenan...    66   1e-07  2
(CR382122) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    66   4e-06  1
(CZ282903) cp26h11.f Candida parapsilosis Random Genomic Lib...    58   1e-04  2
(EE006404) ROE00000073 Rhizopus oryzae Company Rhizopus oryz...    48   0.001  2
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...    36   0.004  7
(EC757582) PPE00006249 Agencourt Biosciences Agen-0020 Non-n...    54   0.014  1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    40   0.022  11
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.031  2
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    40   0.034  2
(AU087618) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    40   0.046  2
(CA856749) PfESToac41f06.y1 Plasmodium falciparum 3D7 gameto...    40   0.046  2
(AX344960) Sequence 31 from Patent WO0200928.                      42   0.056  4
(CU210934) Mouse DNA sequence from clone DN-192H14 on chromo...    52   0.056  1
(AL606988) Mouse DNA sequence from clone RP23-35A4 on chromo...    52   0.056  1
(AC171917) Mus musculus chromosome 8, clone RP23-390K13, com...    52   0.056  1
(AC171678) Mus musculus chromosome 8, clone RP24-104E12, com...    52   0.056  1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    52   0.056  1
(AC079576) Mus musculus clone RP23-87B17, WORKING DRAFT SEQU...    52   0.056  1
(AC171915) Mus musculus chromosome 8 clone RP24-233O4 map 8,...    52   0.056  1
(AZ512223) 1M0357E09R Mouse 10kb plasmid UUGC1M library Mus ...    52   0.056  1
(AL397047) T3 end of clone XAR0AA002D05 of library XAR0AA fr...    50   0.081  2
(EA102720) Sequence 103 from patent US 7195870.                    44   0.083  4
(AX323627) Sequence 115 from Patent WO0192565.                     44   0.083  4
(AX277940) Sequence 103 from Patent WO0177375.                     44   0.083  4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   0.085  18
(DJ386702) Diagnosis of Diseases Associated with Metastasis.       42   0.090  3
(AX281498) Sequence 162 from Patent WO0177376.                     42   0.090  3
(AC180049) Strongylocentrotus purpuratus clone R3-3030J14, W...    48   0.13   2
(AC224175) Bos taurus clone CH240-448D23, WORKING DRAFT SEQU...    38   0.14   7
(AP009601) Solanum lycopersicum DNA, chromosome 8, clone: C0...    50   0.22   1
(AM437658) Vitis vinifera contig VV78X236844.6, whole genome...    50   0.22   1
(EC762912) PPE00002546 Agencourt Biosciences Agen-0020 Non-n...    50   0.22   1
(DW404853) ES-N-S02-0102-W Penaeus monodon Eyestalk cDNA lib...    50   0.22   1
(CK845306) UI-R-BJ0p-aff-c-09-0-UI.s10 UI-R-BJ0p Rattus norv...    48   0.22   2
(BH264508) CH230-121K14.TJ CHORI-230 Segment 1 Rattus norveg...    42   0.23   2
(BQ208362) UI-R-EP0-coc-l-03-0-UI.s1 UI-R-EP0 Rattus norvegi...    48   0.23   2
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    40   0.23   11
(BQ201354) UI-R-DQ1-clt-p-10-0-UI.s1 UI-R-DQ1 Rattus norvegi...    48   0.24   2
(AC009378) Drosophila melanogaster 3L BAC RP98-9E8 (Roswell ...    44   0.37   7
(CX111195) EI056K20 A normalized whole-life-cycle cDNA libra...    46   0.38   2
(AC144884) Papio anubis clone RP41-321K2, WORKING DRAFT SEQU...    36   0.49   2
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    44   0.57   6
(AG945951) Drosophila ananassae DNA, clone: DNB1-022E15.R.fa...    34   0.64   2
(AM462757) Vitis vinifera contig VV78X154072.10, whole genom...    46   0.67   2
(AC019306) Homo sapiens chromosome 18, clone RP11-326M20, co...    42   0.74   2
(BX936448) Zebrafish DNA sequence from clone DKEY-11J4 in li...    48   0.88   1
(BX927412) Zebrafish DNA sequence from clone CH211-143A8 in ...    48   0.88   1
(AM473463) Vitis vinifera contig VV78X199135.8, whole genome...    48   0.88   1
(AM471946) Vitis vinifera contig VV78X027989.3, whole genome...    48   0.88   1
(AM455085) Vitis vinifera contig VV78X077143.46, whole genom...    48   0.88   1
(AM441912) Vitis vinifera contig VV78X216953.7, whole genome...    48   0.88   1
(AC188649) Canis Familiaris chromosome 19, clone XX-399J23, ...    48   0.88   1
(AC150890) Medicago truncatula chromosome 2 clone mth2-74h3,...    48   0.88   1
(AC108560) Rattus norvegicus clone CH230-31G21, *** SEQUENCI...    48   0.88   1
(CU915426) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.88   1
(CU914444) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.88   1
(AC212065) Pongo abelii chromosome 1 clone CH276-63G24, WORK...    48   0.88   1
(AC211428) Pongo abelii chromosome 1 clone CH276-43L3, WORKI...    48   0.88   1
(AC188374) Macaca mulatta chromosome UNK clone CH250-9H12, W...    48   0.88   1
(AC186212) Canis lupus familiaris chromosome 19 clone XX-240...    48   0.88   1
(AC180115) Strongylocentrotus purpuratus clone R3-4007J20, W...    48   0.88   1
(FH677266) CHO_OF5052xe10f1.ab1 CHO_OF5 Nicotiana tabacum ge...    48   0.88   1
(ET920606) CHO_OF214xe19r1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.88   1
(ED055748) AUAC-aal70g11.g1 Ascaris suum whole genome shotgu...    48   0.88   1
(DU320036) 1098448046724 CHORI-243 Ovis aries genomic clone ...    48   0.88   1
(CU392502) Equus caballus GSS, BAC clone CH241-326J18, T7 en...    48   0.88   1
(CG756889) P052-1-A06.za Ppa EcoRI BAC Library Pristionchus ...    48   0.88   1
(BH820781) BACPP15-G01.z Pristionchus pacificus BAC ends Pri...    48   0.88   1
(ES333907) CTZ22-G08.y1d-s SHGC-CTZ Ostreococcus lucimarinus...    48   0.88   1
(AM841158) Nicotiana tabacum EST, clone nt005149023.               48   0.88   1
(AI176851) EST220454 Normalized rat ovary, Bento Soares Ratt...    48   0.88   1
(EY353783) CAWZ2693.rev CAWZ Helobdella robusta Primary Late...    48   0.88   1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    40   0.92   7
(AL109815) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    44   1.1    3
(AF396436) Tetrahymena thermophila strain SB210 mitochondrio...    40   1.4    4
(AX356493) Sequence 127 from Patent WO0181622.                     32   1.4    7
(AX347026) Sequence 2097 from Patent WO0200928.                    32   1.4    7
(AY160101) Dictyostelium discoideum strain AX4 nucleotide ex...    34   1.5    5
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   1.5    7
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    32   1.6    9
(AC017130) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    36   1.8    5
(AC216593) Populus trichocarpa clone POP016-L16, complete se...    40   2.2    9
(CL643630) CH213-53B23.T7 CH213 Gasterosteus aculeatus genom...    36   2.3    2
(BZ395197) EINAI57TF EI_10_12_KB Entamoeba invadens genomic ...    34   2.3    2
(CO733491) SlLT02c05n20f1 squirrel testis library 1 Spermoph...    36   2.4    3

>(BJ325020) Dictyostelium discoideum cDNA clone:dda9c11, 5' end,
           single read.
          Length = 585

 Score = 1160 bits (585), Expect = 0.0
 Identities = 585/585 (100%)
 Strand = Plus / Plus


Query: 1   cagaaactgaccttaagagtactccttcgaaacaattttgagtggttgttagtaaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagaaactgaccttaagagtactccttcgaaacaattttgagtggttgttagtaaggctt 60


Query: 61  tttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttctggcaaaaagagaaattagagagagatctttaaacaactgggtttagaaattctat 120


Query: 121 gatcatttcggttgtgccaagatctcacataaaaaattttttatttccaaattacaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatcatttcggttgtgccaagatctcacataaaaaattttttatttccaaattacaatga 180


Query: 181 aaagatttatttcaacaacaagtttacgtgttttatcaaatttaaataaaaacaataaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagatttatttcaacaacaagtttacgtgttttatcaaatttaaataaaaacaataaca 240


Query: 241 ataacaacaagtttaacaaatcaattgttggagtattcaatagagaattctcaagttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataacaacaagtttaacaaatcaattgttggagtattcaatagagaattctcaagttcaa 300


Query: 301 atgaaggattaaataaagttaattttggtgaaaataataactcatccaccactgaaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgaaggattaaataaagttaattttggtgaaaataataactcatccaccactgaaccaa 360


Query: 361 ctaaagtattatttaacgattcacaattttatcaagaggataaatatcaaggtatttcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctaaagtattatttaacgattcacaattttatcaagaggataaatatcaaggtatttcaa 420


Query: 421 aagaaccatttagtaaagagattgttgatactttattagcagatttaaatccagacgata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagaaccatttagtaaagagattgttgatactttattagcagatttaaatccagacgata 480


Query: 481 ttgaaatcaaaccagatggtttaatttatttaccagagatcaaatatagacgtattttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgaaatcaaaccagatggtttaatttatttaccagagatcaaatatagacgtattttaa 540


Query: 541 atcaagcattcggaccaggaggttgggcattaaaaccattcggac 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcaagcattcggaccaggaggttgggcattaaaaccattcggac 585

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,675,208,653
Number of extensions: 104695278
Number of successful extensions: 9327515
Number of sequences better than 10.0: 279
Length of query: 1357
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1333
Effective length of database: 97,308,875,965
Effective search space: 129712731661345
Effective search space used: 129712731661345
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09928-1 (Contig-U09928-1Q) /CSM_Contig/Contig-U09928-1Q.Seq.d
         (1357 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_54(AC117081|pid:none) Dictyostelium discoideum chromoso...   300   e-161
AM920437_1939(AM920437|pid:none) Penicillium chrysogenum Wiscons...   112   1e-41
U43558_1(U43558|pid:none) Kluyveromyces lactis mitochondrial gen...   106   2e-41
(Q00970) RecName: Full=Mitochondrial genome maintenance protein ...   106   3e-41
AP007171_598(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...   108   7e-40
(Q6BN05) RecName: Full=Mitochondrial genome maintenance protein ...   108   1e-39
S72480(S72480)mgm101 protein - yeast (Kluyveromyces marxianus va...   103   2e-39
AM270372_32(AM270372|pid:none) Aspergillus niger contig An16c020...   105   3e-39
(Q5AI97) RecName: Full=Mitochondrial genome maintenance protein ...   103   2e-38
FM992688_244(FM992688|pid:none) Candida dubliniensis CD36 chromo...   104   5e-38
(Q75DV9) RecName: Full=Mitochondrial genome maintenance protein ...    94   1e-37
(Q4P4Y2) RecName: Full=Mitochondrial genome maintenance protein ...   100   4e-37
CU633895_112(CU633895|pid:none) Podospora anserina genomic DNA c...    83   2e-14
CT573071_2140(CT573071|pid:none) Kuenenia stuttgartiensis genome...    57   6e-13
AF122982_1(AF122982|pid:none) Arabidopsis lyrata cultivar 24 NBS...    37   1.6
(Q5UR06) RecName: Full=Uncharacterized protein R651;  &AY653733_...    35   8.1
CP000264_2682(CP000264|pid:none) Jannaschia sp. CCS1, complete g...    35   8.1

>AC117081_54(AC117081|pid:none) Dictyostelium discoideum chromosome 2
            map 5862124-6045772 strain AX4, complete sequence.
          Length = 377

 Score =  300 bits (767), Expect(3) = e-161
 Identities = 153/209 (73%), Positives = 153/209 (73%)
 Frame = +2

Query: 683  PNSFISFATATESAKSNALVRCCKDLGIGSSLWDPIFIRQWKSEYATERWCENSKTKERR 862
            PNSFISFATATESAKSNALVRCCKDLGIGSSLWDPIFIRQWKSEYATERWCENSKTKERR
Sbjct: 169  PNSFISFATATESAKSNALVRCCKDLGIGSSLWDPIFIRQWKSEYATERWCENSKTKERR 228

Query: 863  LFWFLSNRSENQLPYPWKESDFNQVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 1042
            LFWFLSNRSENQLPYPWKESDFNQVP                                 Q
Sbjct: 229  LFWFLSNRSENQLPYPWKESDFNQVPSNSSYSSSSSSINNNSNSSNNNNNNSDSSSSINQ 288

Query: 1043 PQQETISYHQDDXXXXXXKITXXXXXXXXXXXXXXXXXQLKKYAGKTWRQLVADPKGLSY 1222
            PQQETISYHQDD      KIT                 QLKKYAGKTWRQLVADPKGLSY
Sbjct: 289  PQQETISYHQDDSSSPSSKITEQQDDSEDIDIDDVVPPQLKKYAGKTWRQLVADPKGLSY 348

Query: 1223 LQWASSSFDNAPKIKSQATAILEFINKSQ 1309
            LQWASSSFDNAPKIKSQATAILEFINKSQ
Sbjct: 349  LQWASSSFDNAPKIKSQATAILEFINKSQ 377

 Score =  290 bits (742), Expect(3) = e-161
 Identities = 145/159 (91%), Positives = 145/159 (91%)
 Frame = +3

Query: 177 MKRFISTTSLRVLSXXXXXXXXXXXXXXSIVGVFNREFSSSNEGLNKVNFGENNNSSTTE 356
           MKRFISTTSLRVLS              SIVGVFNREFSSSNEGLNKVNFGENNNSSTTE
Sbjct: 1   MKRFISTTSLRVLSNLNKNNNNNNKFNKSIVGVFNREFSSSNEGLNKVNFGENNNSSTTE 60

Query: 357 PTKVLFNDSQFYQEDKYQGISKEPFSKEIVDTLLADLNPDDIEIKPDGLIYLPEIKYRRI 536
           PTKVLFNDSQFYQEDKYQGISKEPFSKEIVDTLLADLNPDDIEIKPDGLIYLPEIKYRRI
Sbjct: 61  PTKVLFNDSQFYQEDKYQGISKEPFSKEIVDTLLADLNPDDIEIKPDGLIYLPEIKYRRI 120

Query: 537 LNQAFGPGGWALKPFGPPVVEGKTLIRPYALYCLGRYVA 653
           LNQAFGPGGWALKPFGPPVVEGKTLIRPYALYCLGRYVA
Sbjct: 121 LNQAFGPGGWALKPFGPPVVEGKTLIRPYALYCLGRYVA 159

 Score = 24.6 bits (52), Expect(3) = e-161
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 655 ESIGEQQYVP 684
           ESIGEQQYVP
Sbjct: 160 ESIGEQQYVP 169

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,957,114,697
Number of extensions: 37392185
Number of successful extensions: 87646
Number of sequences better than 10.0: 17
Number of HSP's gapped: 87540
Number of HSP's successfully gapped: 32
Length of query: 452
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 320
Effective length of database: 618,001,159
Effective search space: 197760370880
Effective search space used: 197760370880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.93  gvh: 0.46  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for Contig-U09928-1 is mit
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0