Contig-U09871-1
Contig ID Contig-U09871-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09871-1 (Contig-U09871-1Q) /CSM_Contig/Contig-U09871-1Q.Seq.d
ATTTTTTAATTTTGATTTTCAACATTTCATTCATATATTTGTATATACTT
ATATAAAATGTCACTCTTTAATTCAGCTAATAAAGTTATTGGAGGAGTTT
TAAAATTTAATCCAAGTAAATATCAAGTTAGATATTTAAATTTACATGAA
TATCAAAGTAAATCATTAATGGATAAATATGGAGTTAATACACAAAAATG
GAGAGTTGTAACAAAAGCATCAGATGCCATCAAAGCAGCATCAGAATTGA
ATGGAGAATTAGTAGTTAAAGCACAAGTACATGCAGGTGGTAGAGGTAAG
GGTTCATTCATAGAGACAGGATTTAAAGGAGGTGTTCATCTCTGTAAAAC
TGGTAAGGAAGCAGAACGTTTATGTGACGAAATGTTGGGTAAACATCTTG
TAACCAAACAAACCACCAAAGAAGGTACCAAAGTTCAAAGTGTAATGTTG
GCAGAATCAGTTGACCCAAAGAGAGAATTGTATTTTGCAATCGTTATGGA
TCGTAAATATGGTGGACCAGTTATGATTGCATCACCACAAGGTGGTGTTG
ACATTGAGAGTGTTGCAGAGGAAACACCAGATTTAATTTTCAAAGAACCA
ATCGATATCGTCAAAGGTATTCGTCCAGAACAAACTAAAAACCTCGCTGA
GAAATTAGGTTTCACCGGTGAGAAAGCAAAGATCGCTCAACAACAAATGG
AAAACCTCTATCAATTATTCATCAAGAGTGATGCAACTCAAAGTCGAGAT
TAACCCATTCGCTGAAACCACCGATGGTCAAGTCATTTGTATGGATGCTA
AAATCAATTTCGATGACAATGCCTCATTCCGTCAAAAGGAGATTTTCGAA
ATGAGAGATACCGCCGAAGAGGATCCACGTGAGGTTGAAGCTGGTAAATT
TGGTCTCAATTACATTGGTCTCGATGGTAACATTGGTTGTATGGTTAATG
GTGCTGGTTTGGCTATGGCCACCATGGATATCATTAAATTAAAGGGTGGT
ATCCCTGCTAATTTCCTCGATGTAGGTGGTAGTGCCTCTGAACAAGCCGT
CACTGAAGCCTTCAAAATCCTCACTAAAGATCCAAGAGTTAAATGTTTAC
TCGTAAACATTTTCGGTGGTATCATGAAATGTGATATCATTGCCTCTGGT
ATCGTAAATGCTTCAAAACAAGTTGGTCTTAAAATTCCATTAGTTGTACG
TTTAGAAGGTACAAATGTAAACATTGGTAAAGAAATCTTGGAAAAATCTG
GTTTAAATATTACTTCTGCTAGTGATTTAGATGATGCTGCTATTAAAGCT
GTTAATTGTTTAAAAAAATAATTAAATAAAAAAGAAATAATAATAAAAAA
AAAAAAAAAAAAAAAAAGTAGTAATAAATTACAATAGTTAATTATTATTA
TTTATT

Gap no gap
Contig length 1406
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4558102
End point 4556745
Strand (PLUS/MINUS) MINUS
Number of clones 72
Number of EST 126
Link to clone list U09871
List of clone(s)

est1=VFH579F,-9,564
est2=VFM201F,-3,616
est3=AFC617F,1,573
est4=VFF506F,1,584
est5=VFN677F,1,514
est6=AFD423F,2,473
est7=AFJ372F,4,586
est8=SFA258F,5,339
est9=VFC388F,6,271
est10=AFA739F,8,596
est11=AFF274F,8,617
est12=AFI578F,8,594
est13=AFI855F,8,585
est14=AFK346F,8,593
est15=AFN675F,8,582
est16=SFH344F,8,569
est17=VFC521E,8,1343
est18=VFD633F,8,615
est19=VFD829F,8,567
est20=VFM213F,8,609
est21=VFO422F,8,511
est22=AFB401F,9,616
est23=VFL479F,14,656
est24=VFN746F,14,568
est25=VFO461F,14,506
est26=VFB707F,16,242
est27=AFK704F,20,654
est28=AFI542F,21,569
est29=SFJ195F,21,508
est30=SFJ594F,21,581
est31=SFK777E,21,1340
est32=VFG281F,21,505
est33=VFN263F,21,626
est34=VFN464F,21,632
est35=VFO491F,21,573
est36=VFE788F,22,470
est37=VFF749F,22,566
est38=AFI689F,23,582
est39=CFF501F,24,572
est40=SFK514F,24,613
est41=VFF668F,24,627
est42=VFO208F,24,560
est43=VFJ843F,25,616
est44=VFM558F,31,627
est45=AFO473F,32,581
est46=CFG893F,32,625
est47=VFA632F,32,507
est48=VFA670F,32,614
est49=VFJ185F,32,572
est50=AFD742F,33,633
est51=CFB555F,33,513
est52=CFH893F,33,627
est53=VFB164F,33,570
est54=VFM565F,33,591
est55=AFD689F,34,617
est56=VFA203F,34,583
est57=AFB325F,35,659
est58=CFI546F,35,627
est59=SFH625F,35,430
est60=VFA723F,39,617
est61=AFG227E,41,1342
est62=SSI167F,41,638
est63=SLG726F,48,679
est64=SLG890F,48,636
est65=AFI318F,138,563
est66=AFB125F,175,402
est67=SFC186Z,572,1337
est68=AFI855Z,573,1340
est69=AFK346Z,573,1340
est70=SFH344Z,578,1340
est71=AFD742Z,587,1214
est72=AFJ372Z,589,1340
est73=AFD689Z,590,1306
est74=VFJ446Z,594,1290
est75=AFF274Z,611,1341
est76=VFD829Z,611,1344
est77=VFF668Z,611,1343
est78=VFH579Z,611,1345
est79=VFJ843Z,611,1342
est80=VFA764Z,612,1229
est81=VFM558Z,612,1305
est82=AFI578Z,614,1305
est83=VFA723Z,626,1303
est84=AFC617Z,630,1340
est85=CFI546Z,632,1298
est86=VFB707Z,636,1286
est87=VFO208Z,639,1344
est88=VFA632Z,651,1322
est89=AFI318Z,653,1305
est90=AFI689Z,653,1342
est91=CFB555Z,653,1281
est92=VFM213Z,653,1347
est93=VFN464Z,653,1344
est94=AFO473Z,654,1324
est95=VFF749Z,661,1341
est96=SSI167Z,663,1355
est97=VFB164Z,663,1305
est98=VFA203Z,666,1311
est99=CFG893Z,671,1298
est100=VFL479Z,673,1325
est101=AFI542Z,674,1342
est102=VFA670Z,675,1342
est103=CFF501Z,676,1334
est104=AFN675Z,698,1306
est105=AFI894Z,702,1306
est106=CFH893Z,704,1286
est107=AFA739Z,706,1293
est108=AFE362Z,706,1288
est109=SFJ195Z,707,1340
est110=SFJ594Z,708,1340
est111=VFM201Z,710,1346
est112=SLG726Z,726,1407
est113=AFI453Z,757,1320
est114=VFE788Z,757,1343
est115=VFG281Z,757,1344
est116=VFF506Z,765,1347
est117=SLG890Z,800,1407
est118=AFD423Z,852,1323
est119=AFK704Z,874,1342
est120=VFN263Z,876,1341
est121=AFB401Z,894,1317
est122=VFM565Z,896,1313
est123=SFA258Z,926,1323
est124=SFK514Z,935,1292
est125=VFC388Z,979,1324
est126=VFN677Z,1103,1253
Translated Amino Acid sequence
if*f*FSTFHSYICIYLYKMSLFNSANKVIGGVLKFNPSKYQVRYLNLHEYQSKSLMDKY
GVNTQKWRVVTKASDAIKAASELNGELVVKAQVHAGGRGKGSFIETGFKGGVHLCKTGKE
AERLCDEMLGKHLVTKQTTKEGTKVQSVMLAESVDPKRELYFAIVMDRKYGGPVMIASPQ
GGVDIESVAEETPDLIFKEPIDIVKGIRPEQTKNLAEKLGFTGEKAKIAQQQMENLYQLF
IKSDATQSRD*pir*nhrwsshlygc*nqfr*qclipskgdfrneryrrrgst*g*sw*i
wsqlhwsrw*hwlyg*wcwfgyghhgyh*ikgwypc*fprcrw*cl*tsrh*slqnph*r
sks*mftrkhfrwyhem*yhclwyrkcfktsws*nsisctfrrykckhw*rnlgkiwfky
yfc**fr*ccy*sc*lfkkiik*krnnnkkkkkkkk***itivnyyyl


Translated Amino Acid sequence (All Frames)
Frame A:
if*f*FSTFHSYICIYLYKMSLFNSANKVIGGVLKFNPSKYQVRYLNLHEYQSKSLMDKY
GVNTQKWRVVTKASDAIKAASELNGELVVKAQVHAGGRGKGSFIETGFKGGVHLCKTGKE
AERLCDEMLGKHLVTKQTTKEGTKVQSVMLAESVDPKRELYFAIVMDRKYGGPVMIASPQ
GGVDIESVAEETPDLIFKEPIDIVKGIRPEQTKNLAEKLGFTGEKAKIAQQQMENLYQLF
IKSDATQSRD*pir*nhrwsshlygc*nqfr*qclipskgdfrneryrrrgst*g*sw*i
wsqlhwsrw*hwlyg*wcwfgyghhgyh*ikgwypc*fprcrw*cl*tsrh*slqnph*r
sks*mftrkhfrwyhem*yhclwyrkcfktsws*nsisctfrrykckhw*rnlgkiwfky
yfc**fr*ccy*sc*lfkkiik*krnnnkkkkkkkk***itivnyyyl


Frame B:
ffnfdfqhfihifvytyikchsliqliklleef*nliqvnikldi*iymnikvnh*winm
elihkngel*qkhqmpskqhqn*men**lkhkymqvvevrvhs*rqdlkevfisvklvrk
qnvyvtkcwvnil*pnkppkkvpkfkv*cwqnqltqrencilqslwivnmvdql*lhhhk
vvltlrvlqrkhqi*fsknqsisskvfvqnklktslrn*vspvrkqrslnnkwktsinys
srvmqlkveinpfaettdgqvicmdakinfddnasfrqkeifemrdtaeedpreveagkf
glnyigldgnigcmvngaglamatmdiiklkggipanfldvggsaseqavteafkiltkd
prvkcllvnifggimkcdiiasgivnaskqvglkiplvvrlegtnvnigkeileksglni
tsasdlddaaikavnclkk*lnkkeiiikkkkkkkssnklq*liiiiy


Frame C:
flilifnisfiylyili*nvtl*fs**sywrsfki*sk*iss*ifkft*isk*iing*iw
s*ytkmescnksirchqssiriewriss*ststcrw*r*gfihrdri*rrcssl*nw*gs
rtfm*rnvg*tscnqtnhqrryqsskcnvgris*pkerivfcnrygs*iwwtsydcittr
wc*h*eccrgntrfnfqrtnryrqryssrtn*kpr*eirfhr*eskdrsttngkplsiih
qe*cnsksrlthslkppmvksfvwmlksismtmphsvkrrfsk*eippkrihvrlklvnl
vsitlvsmvtlvvwlmvlvwlwppwisln*rvvsllissm*vvvplnkpslkpsksslki
qelnvys*tfsvvs*nvislplvs*mlqnklvlkfh*lyv*kvqm*tlvkkswknlv*il
lllvi*mmlllklliv*knn*ikkk***kkkkkkkvvinyns*lllfi


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09871-1 (Contig-U09871-1Q)
/CSM_Contig/Contig-U09871-1Q.Seq.d
(1406 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09871-1 (Contig-U09871-1Q) /CSM_Contig/Conti... 2597 0.0
Contig-U10749-1 (Contig-U10749-1Q) /CSM_Contig/Conti... 62 2e-09
Contig-U12843-1 (Contig-U12843-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U12182-1 (Contig-U12182-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U10276-1 (Contig-U10276-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U06683-1 (Contig-U06683-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U12113-1 (Contig-U12113-1Q) /CSM_Contig/Conti... 36 0.100
Contig-U11848-1 (Contig-U11848-1Q) /CSM_Contig/Conti... 34 0.39

>Contig-U09871-1 (Contig-U09871-1Q) /CSM_Contig/Contig-U09871-1Q.Seq.d
Length = 1406

Score = 2597 bits (1310), Expect = 0.0
Identities = 1310/1310 (100%)
Strand = Plus / Plus


Query: 1 attttttaattttgattttcaacatttcattcatatatttgtatatacttatataaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttttaattttgattttcaacatttcattcatatatttgtatatacttatataaaatg 60


Query: 61 tcactctttaattcagctaataaagttattggaggagttttaaaatttaatccaagtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcactctttaattcagctaataaagttattggaggagttttaaaatttaatccaagtaaa 120


Query: 121 tatcaagttagatatttaaatttacatgaatatcaaagtaaatcattaatggataaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatcaagttagatatttaaatttacatgaatatcaaagtaaatcattaatggataaatat 180


Query: 181 ggagttaatacacaaaaatggagagttgtaacaaaagcatcagatgccatcaaagcagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggagttaatacacaaaaatggagagttgtaacaaaagcatcagatgccatcaaagcagca 240


Query: 241 tcagaattgaatggagaattagtagttaaagcacaagtacatgcaggtggtagaggtaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcagaattgaatggagaattagtagttaaagcacaagtacatgcaggtggtagaggtaag 300


Query: 301 ggttcattcatagagacaggatttaaaggaggtgttcatctctgtaaaactggtaaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggttcattcatagagacaggatttaaaggaggtgttcatctctgtaaaactggtaaggaa 360


Query: 361 gcagaacgtttatgtgacgaaatgttgggtaaacatcttgtaaccaaacaaaccaccaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcagaacgtttatgtgacgaaatgttgggtaaacatcttgtaaccaaacaaaccaccaaa 420


Query: 421 gaaggtaccaaagttcaaagtgtaatgttggcagaatcagttgacccaaagagagaattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaggtaccaaagttcaaagtgtaatgttggcagaatcagttgacccaaagagagaattg 480


Query: 481 tattttgcaatcgttatggatcgtaaatatggtggaccagttatgattgcatcaccacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tattttgcaatcgttatggatcgtaaatatggtggaccagttatgattgcatcaccacaa 540


Query: 541 ggtggtgttgacattgagagtgttgcagaggaaacaccagatttaattttcaaagaacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggtggtgttgacattgagagtgttgcagaggaaacaccagatttaattttcaaagaacca 600


Query: 601 atcgatatcgtcaaaggtattcgtccagaacaaactaaaaacctcgctgagaaattaggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atcgatatcgtcaaaggtattcgtccagaacaaactaaaaacctcgctgagaaattaggt 660


Query: 661 ttcaccggtgagaaagcaaagatcgctcaacaacaaatggaaaacctctatcaattattc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttcaccggtgagaaagcaaagatcgctcaacaacaaatggaaaacctctatcaattattc 720


Query: 721 atcaagagtgatgcaactcaaagtcgagattaacccattcgctgaaaccaccgatggtca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atcaagagtgatgcaactcaaagtcgagattaacccattcgctgaaaccaccgatggtca 780


Query: 781 agtcatttgtatggatgctaaaatcaatttcgatgacaatgcctcattccgtcaaaagga 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agtcatttgtatggatgctaaaatcaatttcgatgacaatgcctcattccgtcaaaagga 840


Query: 841 gattttcgaaatgagagataccgccgaagaggatccacgtgaggttgaagctggtaaatt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gattttcgaaatgagagataccgccgaagaggatccacgtgaggttgaagctggtaaatt 900


Query: 901 tggtctcaattacattggtctcgatggtaacattggttgtatggttaatggtgctggttt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tggtctcaattacattggtctcgatggtaacattggttgtatggttaatggtgctggttt 960


Query: 961 ggctatggccaccatggatatcattaaattaaagggtggtatccctgctaatttcctcga 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ggctatggccaccatggatatcattaaattaaagggtggtatccctgctaatttcctcga 1020


Query: 1021 tgtaggtggtagtgcctctgaacaagccgtcactgaagccttcaaaatcctcactaaaga 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tgtaggtggtagtgcctctgaacaagccgtcactgaagccttcaaaatcctcactaaaga 1080


Query: 1081 tccaagagttaaatgtttactcgtaaacattttcggtggtatcatgaaatgtgatatcat 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tccaagagttaaatgtttactcgtaaacattttcggtggtatcatgaaatgtgatatcat 1140


Query: 1141 tgcctctggtatcgtaaatgcttcaaaacaagttggtcttaaaattccattagttgtacg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tgcctctggtatcgtaaatgcttcaaaacaagttggtcttaaaattccattagttgtacg 1200


Query: 1201 tttagaaggtacaaatgtaaacattggtaaagaaatcttggaaaaatctggtttaaatat 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 tttagaaggtacaaatgtaaacattggtaaagaaatcttggaaaaatctggtttaaatat 1260


Query: 1261 tacttctgctagtgatttagatgatgctgctattaaagctgttaattgtt 1310
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 tacttctgctagtgatttagatgatgctgctattaaagctgttaattgtt 1310


Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 1368 gtagtaataaattacaatagttaattattattatttatt 1406
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 gtagtaataaattacaatagttaattattattatttatt 1406


>Contig-U10749-1 (Contig-U10749-1Q) /CSM_Contig/Contig-U10749-1Q.Seq.d
Length = 1397

Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus


Query: 1109 attttcggtggtatcatgaaatgtgatatcattgc 1143
||||||||||||||||||||||||||| |||||||
Sbjct: 1095 attttcggtggtatcatgaaatgtgatgtcattgc 1129


Score = 58.0 bits (29), Expect = 3e-08
Identities = 158/201 (78%)
Strand = Plus / Plus


Query: 788 tgtatggatgctaaaatcaatttcgatgacaatgcctcattccgtcaaaaggagattttc 847
||||||||||| ||| | ||||||||||| ||||| |||||||||| || ||||||
Sbjct: 774 tgtatggatgccaaattgaatttcgatgataatgctgcattccgtcatccagatattttc 833


Query: 848 gaaatgagagataccgccgaagaggatccacgtgaggttgaagctggtaaatttggtctc 907
|| | ||||||| | |||||||||||||||| ||| |||| | | |||| | |
Sbjct: 834 aaattaagagataaatctcaagaggatccacgtgaagttaaagcagcagagtttgatttg 893


Query: 908 aattacattggtctcgatggtaacattggttgtatggttaatggtgctggtttggctatg 967
|| ||||||||| | ||||| || ||||||||| | || |||||||| ||||| || |||
Sbjct: 894 aactacattggtttggatggcaatattggttgtttagtaaatggtgcaggtttagcaatg 953


Query: 968 gccaccatggatatcattaaa 988
|| | |||||||||||||||
Sbjct: 954 gcatcaatggatatcattaaa 974


Score = 54.0 bits (27), Expect = 4e-07
Identities = 51/59 (86%)
Strand = Plus / Plus


Query: 479 tgtattttgcaatcgttatggatcgtaaatatggtggaccagttatgattgcatcacca 537
||||||| ||||| |||||||||||||| |||||| ||||||||| |||| ||||||
Sbjct: 539 tgtatttcgcaattcttatggatcgtaaagctggtggtccagttatggttgcttcacca 597


Score = 42.1 bits (21), Expect = 0.002
Identities = 36/41 (87%)
Strand = Plus / Plus


Query: 259 ttagtagttaaagcacaagtacatgcaggtggtagaggtaa 299
|||||||| ||||||||||| |||||||||||||||||
Sbjct: 322 ttagtagtcaaagcacaagttttagcaggtggtagaggtaa 362


Score = 38.2 bits (19), Expect = 0.025
Identities = 34/39 (87%)
Strand = Plus / Plus


Query: 625 ccagaacaaactaaaaacctcgctgagaaattaggtttc 663
|||||||||||||||| | ||||| ||||||||||||
Sbjct: 612 ccagaacaaactaaaagattagctgaaaaattaggtttc 650


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 400 gtaaccaaacaaacc 414
|||||||||||||||
Sbjct: 460 gtaaccaaacaaacc 474


>Contig-U12843-1 (Contig-U12843-1Q) /CSM_Contig/Contig-U12843-1Q.Seq.d
Length = 177

Score = 38.2 bits (19), Expect = 0.025
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 1388 ttaattattattatttatt 1406
|||||||||||||||||||
Sbjct: 143 ttaattattattatttatt 125


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,276
Number of Sequences: 6905
Number of extensions: 28276
Number of successful extensions: 3482
Number of sequences better than 10.0: 415
length of query: 1406
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1390
effective length of database: 5,564,391
effective search space: 7734503490
effective search space used: 7734503490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U09871-1 (Contig-U09871-1Q) /CSM_Contig/Contig-U09871-1Q.Seq.d
(1406 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ434456) Dictyostelium discoideum cDNA clone:ddv16m19, 3' ... 1330 0.0 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 1291 0.0 2
(BJ411863) Dictyostelium discoideum cDNA clone:ddv6i05, 5' e... 1275 0.0 1
(BJ415843) Dictyostelium discoideum cDNA clone:ddv23n20, 5' ... 1271 0.0 1
(BJ325212) Dictyostelium discoideum cDNA clone:dda13e08, 5' ... 1267 0.0 1
(AU061945) Dictyostelium discoideum slug cDNA, clone SLG726. 1253 0.0 1
(BJ390559) Dictyostelium discoideum cDNA clone:dds22j19, 5' ... 1243 0.0 1
(BJ327877) Dictyostelium discoideum cDNA clone:dda22h01, 5' ... 1241 0.0 1
(BJ346663) Dictyostelium discoideum cDNA clone:dda24j16, 3' ... 1239 0.0 2
(BJ325977) Dictyostelium discoideum cDNA clone:dda3b07, 5' e... 1231 0.0 1
(BJ329970) Dictyostelium discoideum cDNA clone:dda26l24, 5' ... 1215 0.0 1
(BJ416904) Dictyostelium discoideum cDNA clone:ddv27p16, 5' ... 1211 0.0 1
(BJ412388) Dictyostelium discoideum cDNA clone:ddv8a10, 5' e... 1203 0.0 1
(BJ323682) Dictyostelium discoideum cDNA clone:dda11c20, 5' ... 1201 0.0 1
(BJ325917) Dictyostelium discoideum cDNA clone:dda3b02, 5' e... 1197 0.0 1
(BJ416891) Dictyostelium discoideum cDNA clone:ddv27m16, 5' ... 1191 0.0 1
(BJ416145) Dictyostelium discoideum cDNA clone:ddv25i04, 5' ... 1191 0.0 1
(BJ410446) Dictyostelium discoideum cDNA clone:ddv12g18, 5' ... 1187 0.0 1
(BJ434789) Dictyostelium discoideum cDNA clone:ddv25a02, 3' ... 1183 0.0 1
(BJ361362) Dictyostelium discoideum cDNA clone:ddc16j24, 5' ... 1179 0.0 1
(BJ359464) Dictyostelium discoideum cDNA clone:ddc14j24, 5' ... 1178 0.0 1
(BJ324833) Dictyostelium discoideum cDNA clone:dda8d11, 5' e... 1178 0.0 1
(BJ361705) Dictyostelium discoideum cDNA clone:ddc18k11, 5' ... 1176 0.0 1
(BJ390361) Dictyostelium discoideum cDNA clone:dds22k03, 5' ... 1170 0.0 1
(AU061987) Dictyostelium discoideum slug cDNA, clone SLG890. 1168 0.0 1
(BJ416463) Dictyostelium discoideum cDNA clone:ddv26c15, 5' ... 1168 0.0 1
(BJ416106) Dictyostelium discoideum cDNA clone:ddv25a02, 5' ... 1162 0.0 2
(BJ325814) Dictyostelium discoideum cDNA clone:dda2n09, 5' e... 1162 0.0 1
(BJ327026) Dictyostelium discoideum cDNA clone:dda18k19, 5' ... 1158 0.0 1
(BJ410335) Dictyostelium discoideum cDNA clone:ddv12k01, 5' ... 1156 0.0 1
(BJ327693) Dictyostelium discoideum cDNA clone:dda21l11, 5' ... 1156 0.0 1
(BJ411000) Dictyostelium discoideum cDNA clone:ddv2k18, 5' e... 1154 0.0 1
(BJ329740) Dictyostelium discoideum cDNA clone:dda26i05, 5' ... 1152 0.0 1
(BJ414756) Dictyostelium discoideum cDNA clone:ddv20f12, 5' ... 1142 0.0 1
(BJ326966) Dictyostelium discoideum cDNA clone:dda18n14, 5' ... 1140 0.0 1
(BJ328598) Dictyostelium discoideum cDNA clone:dda28e20, 5' ... 1134 0.0 1
(C90165) Dictyostelium discoideum slug cDNA, clone SSI167. 1130 0.0 2
(BJ324372) Dictyostelium discoideum cDNA clone:dda6a06, 5' e... 1130 0.0 1
(BJ430107) Dictyostelium discoideum cDNA clone:ddv6i05, 3' e... 1116 0.0 2
(BJ390016) Dictyostelium discoideum cDNA clone:dds20k23, 5' ... 1112 0.0 1
(BJ412414) Dictyostelium discoideum cDNA clone:ddv8j08, 5' e... 1108 0.0 1
(BJ347500) Dictyostelium discoideum cDNA clone:dda27e07, 3' ... 1108 0.0 2
(BJ416456) Dictyostelium discoideum cDNA clone:ddv26a17, 5' ... 1106 0.0 1
(BJ410879) Dictyostelium discoideum cDNA clone:ddv2n05, 5' e... 1106 0.0 2
(BJ326984) Dictyostelium discoideum cDNA clone:dda18a24, 5' ... 1100 0.0 1
(BJ417676) Dictyostelium discoideum cDNA clone:ddv28l11, 5' ... 1098 0.0 1
(BJ431318) Dictyostelium discoideum cDNA clone:ddv13a22, 3' ... 1096 0.0 1
(BJ435237) Dictyostelium discoideum cDNA clone:ddv26c15, 3' ... 1094 0.0 2
(BJ417200) Dictyostelium discoideum cDNA clone:ddv29f24, 5' ... 1094 0.0 1
(BJ358932) Dictyostelium discoideum cDNA clone:ddc12a01, 5' ... 1088 0.0 1
(BJ327239) Dictyostelium discoideum cDNA clone:dda19p17, 5' ... 1084 0.0 1
(BJ428164) Dictyostelium discoideum cDNA clone:ddv10p21, 3' ... 1082 0.0 1
(BJ375350) Dictyostelium discoideum cDNA clone:ddc18k11, 3' ... 1082 0.0 2
(BJ344254) Dictyostelium discoideum cDNA clone:dda18l24, 3' ... 1076 0.0 2
(BJ410426) Dictyostelium discoideum cDNA clone:ddv12b13, 5' ... 1074 0.0 1
(BJ326854) Dictyostelium discoideum cDNA clone:dda18c11, 5' ... 1074 0.0 1
(BJ324927) Dictyostelium discoideum cDNA clone:dda8a24, 5' e... 1068 0.0 2
(BJ432677) Dictyostelium discoideum cDNA clone:ddv19l12, 3' ... 1065 0.0 2
(BJ414620) Dictyostelium discoideum cDNA clone:ddv19i21, 5' ... 1065 0.0 1
(BJ411270) Dictyostelium discoideum cDNA clone:ddv3o15, 5' e... 1065 0.0 1
(BJ435624) Dictyostelium discoideum cDNA clone:ddv27p16, 3' ... 1057 0.0 3
(BJ434115) Dictyostelium discoideum cDNA clone:ddv23n20, 3' ... 1057 0.0 3
(BJ401949) Dictyostelium discoideum cDNA clone:dds19m23, 3' ... 1057 0.0 3
(BJ345994) Dictyostelium discoideum cDNA clone:dda29b20, 3' ... 1057 0.0 3
(BJ344050) Dictyostelium discoideum cDNA clone:dda18c11, 3' ... 1057 0.0 3
(BJ342289) Dictyostelium discoideum cDNA clone:dda13e08, 3' ... 1057 0.0 3
(BJ341278) Dictyostelium discoideum cDNA clone:dda6a06, 3' e... 1057 0.0 3
(BJ340130) Dictyostelium discoideum cDNA clone:dda11c20, 3' ... 1057 0.0 3
(BJ430696) Dictyostelium discoideum cDNA clone:ddv8j08, 3' e... 1055 0.0 3
(BJ428607) Dictyostelium discoideum cDNA clone:ddv12g18, 3' ... 1055 0.0 3
(BJ428583) Dictyostelium discoideum cDNA clone:ddv12b13, 3' ... 1055 0.0 3
(BJ417035) Dictyostelium discoideum cDNA clone:ddv29o02, 5' ... 1055 0.0 1
(BJ413773) Dictyostelium discoideum cDNA clone:ddv16m19, 5' ... 1055 0.0 2
(BJ401319) Dictyostelium discoideum cDNA clone:dds22j19, 3' ... 1055 0.0 3
(BJ400906) Dictyostelium discoideum cDNA clone:dds15h11, 3' ... 1055 0.0 3
(BJ399416) Dictyostelium discoideum cDNA clone:dds5k21, 3' e... 1055 0.0 3
(BJ344198) Dictyostelium discoideum cDNA clone:dda18a24, 3' ... 1055 0.0 3
(BJ343744) Dictyostelium discoideum cDNA clone:dda17d05, 3' ... 1055 0.0 3
(BJ402227) Dictyostelium discoideum cDNA clone:dds20k23, 3' ... 1053 0.0 3
(BJ434833) Dictyostelium discoideum cDNA clone:ddv25i04, 3' ... 1049 0.0 3
(BJ372288) Dictyostelium discoideum cDNA clone:ddc12a01, 3' ... 1049 0.0 3
(BJ344244) Dictyostelium discoideum cDNA clone:dda18k19, 3' ... 1031 0.0 3
(BJ342135) Dictyostelium discoideum cDNA clone:dda9l15, 3' e... 1029 0.0 2
(AU039978) Dictyostelium discoideum slug cDNA, clone SLG890. 1013 0.0 2
(BJ410568) Dictyostelium discoideum cDNA clone:ddv1e02, 5' e... 1005 0.0 2
(AU039910) Dictyostelium discoideum slug cDNA, clone SLG726. 1001 0.0 3
(BJ344552) Dictyostelium discoideum cDNA clone:dda19p17, 3' ... 991 0.0 4
(BJ432947) Dictyostelium discoideum cDNA clone:ddv20f12, 3' ... 987 0.0 4
(BJ429604) Dictyostelium discoideum cDNA clone:ddv4n01, 3' e... 987 0.0 2
(BJ429494) Dictyostelium discoideum cDNA clone:ddv3o15, 3' e... 987 0.0 3
(BJ429186) Dictyostelium discoideum cDNA clone:ddv2k18, 3' e... 987 0.0 4
(BJ347373) Dictyostelium discoideum cDNA clone:dda26l24, 3' ... 987 0.0 4
(BJ345042) Dictyostelium discoideum cDNA clone:dda21l11, 3' ... 987 0.0 2
(BJ340510) Dictyostelium discoideum cDNA clone:dda2n09, 3' e... 987 0.0 3
(BJ429048) Dictyostelium discoideum cDNA clone:ddv2n05, 3' e... 981 0.0 3
(BJ374946) Dictyostelium discoideum cDNA clone:ddc16j24, 3' ... 981 0.0 4
(BJ373713) Dictyostelium discoideum cDNA clone:ddc4m13, 3' e... 981 0.0 3
(BJ344180) Dictyostelium discoideum cDNA clone:dda18n14, 3' ... 979 0.0 4
(BJ435972) Dictyostelium discoideum cDNA clone:ddv29o02, 3' ... 969 0.0 4
(BJ429211) Dictyostelium discoideum cDNA clone:ddv2p15, 3' e... 959 0.0 2

>(BJ434456) Dictyostelium discoideum cDNA clone:ddv16m19, 3' end,
single read.
Length = 730

Score = 1330 bits (671), Expect(2) = 0.0
Identities = 673/674 (99%)
Strand = Plus / Minus


Query: 637 aaaaacctcgctgagaaattaggtttcaccggtgagaaagcaaagatcgctcaacaacaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aaaaacctcgctgagaaattaggtttcaccggtgagaaagcaaagatcgctcaacaacaa 643


Query: 697 atggaaaacctctatcaattattcatcaagagtgatgcaactcaaagtcgagattaaccc 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atggaaaacctctatcaattattcatcaagagtgatgcaactcaaagtcgagattaaccc 583


Query: 757 attcgctgaaaccaccgatggtcaagtcatttgtatggatgctaaaatcaatttcgatga 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 attcgctgaaaccaccgatggtcaagtcatttgtatggatgctaaaatcaatttcgatga 523


Query: 817 caatgcctcattccgtcaaaaggagattttcgaaatgagagataccgccgaagaggatcc 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 caatgcctcattccgtcaaaaggagattttcgaaatgagagataccgccgaagaggatcc 463


Query: 877 acgtgaggttgaagctggtaaatttggtctcaattacattggtctcgatggtaacattgg 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acgtgaggttgaagctggtaaatttggtctcaattacattggtctcgatggtaacattgg 403


Query: 937 ttgtatggttaatggtgctggtttggctatggccaccatggatatcattaaattaaaggg 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttgtatggttaatggtgctggtttggctatggccaccatggatatcattaaattaaaggg 343


Query: 997 tggtatccctgctaatttcctcgatgtaggtggtagtgcctctgaacaagccgtcactga 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tggtatccctgctaatttcctcgatgtaggtggtagtgcctctgaacaagccgtcactga 283


Query: 1057 agccttcaaaatcctcactaaagatccaagagttaaatgtttactcgtaaacattttcgg 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agccttcaaaatcctcactaaagatccaagagttaaatgtttactcgtaaacattttcgg 223


Query: 1117 tggtatcatgaaatgtgatatcattgcctctggtatcgtaaatgcttcaaaacaagttgg 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tggtatcatgaaatgtgatatcattgcctctggtatcgtaaatgcttcaaaacaagttgg 163


Query: 1177 tcttaaaattccattagttgtacgtttagaaggtacaaatgtaaacattggtaaagaaat 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tcttaaaattccattagttgtacgtttagaaggtacaaatgtaaacattggtaaagaaat 103


Query: 1237 cttggaaaaatctggtttaaatattacttctgctagtgatttagatgatgctgctattaa 1296
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 102 cttggaaaaatctggtttaaatattacttctgctagtnatttagatgatgctgctattaa 43


Query: 1297 agctgttaattgtt 1310
||||||||||||||
Sbjct: 42 agctgttaattgtt 29

Score = 63.9 bits (32), Expect(2) = 0.0
Identities = 32/32 (100%)
Strand = Plus / Minus


Query: 610 gtcaaaggtattcgtccagaacaaactaaaaa 641
||||||||||||||||||||||||||||||||
Sbjct: 730 gtcaaaggtattcgtccagaacaaactaaaaa 699

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,558,524,931
Number of extensions: 97955222
Number of successful extensions: 8196028
Number of sequences better than 10.0: 2357
Length of query: 1406
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1382
Effective length of database: 97,308,875,965
Effective search space: 134480866583630
Effective search space used: 134480866583630
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09871-1 (Contig-U09871-1Q) /CSM_Contig/Contig-U09871-1Q.Seq.d
(1406 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115594_9(AC115594|pid:none) Dictyostelium discoideum chromosom... 259 e-126
(Q55AI5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 259 e-126
BC108802_1(BC108802|pid:none) Xenopus laevis hypothetical protei... 254 e-123
BC084473_1(BC084473|pid:none) Xenopus tropicalis hypothetical LO... 255 e-123
BC160886_1(BC160886|pid:none) Rattus norvegicus succinate-CoA li... 247 e-122
BC099746_1(BC099746|pid:none) Rattus norvegicus succinate-CoA li... 247 e-122
AF058956_1(AF058956|pid:none) Mus musculus GTP-specific succinyl... 248 e-120
BT039713_1(BT039713|pid:none) Zea mays full-length cDNA clone ZM... 283 e-118
(P53589) RecName: Full=Probable succinyl-CoA ligase [GDP-forming... 256 e-118
BC089863_1(BC089863|pid:none) Rattus norvegicus succinate-CoA li... 247 e-117
(Q6K9N6) RecName: Full=Succinyl-CoA ligase [GDP-forming] subunit... 284 e-116
(O82662) RecName: Full=Succinyl-CoA ligase [GDP-forming] subunit... 278 e-116
EF530042_1(EF530042|pid:none) Caragana jubata succinyl-CoA ligas... 277 e-116
AY087596_1(AY087596|pid:none) Arabidopsis thaliana clone 36904 m... 276 e-116
DQ294279_1(DQ294279|pid:none) Solanum tuberosum clone 180E05 suc... 276 e-114
AE014296_1024(AE014296|pid:none) Drosophila melanogaster chromos... 258 e-113
AJ851731_1(AJ851731|pid:none) Gallus gallus mRNA for hypothetica... 243 e-111
BC043312_1(BC043312|pid:none) Mus musculus succinate-Coenzyme A ... 248 e-111
(O97580) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 242 e-110
AK001847_1(AK001847|pid:none) Homo sapiens cDNA FLJ10985 fis, cl... 242 e-110
U87095_1(U87095|pid:none) Trichomonas vaginalis adhesin protein ... 247 e-110
AK150594_1(AK150594|pid:none) Mus musculus bone marrow macrophag... 242 e-110
AF058953_1(AF058953|pid:none) Homo sapiens ATP-specific succinyl... 242 e-109
BX640602_1(BX640602|pid:none) Homo sapiens mRNA; cDNA DKFZp686D0... 242 e-109
BC118443_1(BC118443|pid:none) Bos taurus succinate-CoA ligase, A... 242 e-109
(Q4R517) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 240 e-109
AL157369_1(AL157369|pid:none) Human DNA sequence from clone RP11... 242 e-109
AF058955_1(AF058955|pid:none) Mus musculus ATP-specific succinyl... 242 e-109
BC166998_1(BC166998|pid:none) Rattus norvegicus succinate-CoA li... 240 e-108
BC059701_1(BC059701|pid:none) Danio rerio succinate-CoA ligase, ... 239 e-108
AE014297_861(AE014297|pid:none) Drosophila melanogaster chromoso... 246 e-106
(A1AZH7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 249 e-106
AY849649_1(AY849649|pid:none) Magnaporthe grisea succinyl-CoA li... 239 e-106
AK316271_1(AK316271|pid:none) Homo sapiens cDNA, FLJ79170 comple... 242 e-105
CP000922_1730(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 263 e-105
AF087890_1(AF087890|pid:none) Homo sapiens beta-succinyl CoA syn... 242 e-105
AE017341_719(AE017341|pid:none) Cryptococcus neoformans var. neo... 240 e-105
(B6JE33) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 249 e-105
(A4WNM6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 248 e-105
(Q9EYG9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 253 e-104
(A3PN13) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 248 e-104
(A4IM83) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 262 e-104
CP000943_2036(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 252 e-103
(A5VSQ3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 256 e-103
(Q9P567) RecName: Full=Probable succinyl-CoA ligase [GDP-forming... 236 e-103
(Q5L0N7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 258 e-103
(Q65JP0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 256 e-103
CP001349_1078(CP001349|pid:none) Methylobacterium nodulans ORS 2... 249 e-103
(A8FD73) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 254 e-103
CP000830_2862(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 246 e-102
CU459003_926(CU459003|pid:none) Magnetospirillum gryphiswaldense... 247 e-102
CR380952_334(CR380952|pid:none) Candida glabrata strain CBS138 c... 218 e-102
CP001032_4214(CP001032|pid:none) Opitutus terrae PB90-1, complet... 230 e-102
(Q6MGW1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 254 e-102
(Q98EC5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 252 e-102
CP000356_174(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ... 240 e-101
(Q07UX6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 248 e-101
CP001615_2881(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 246 e-101
CP001029_1554(CP001029|pid:none) Methylobacterium populi BJ001, ... 249 e-101
(Q5WFP4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 247 e-101
(Q11CV8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 250 e-100
AM920428_665(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 228 e-100
CP000362_1505(CP000362|pid:none) Roseobacter denitrificans OCh 1... 244 e-100
(A9VT74) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 249 e-100
CP000908_1614(CP000908|pid:none) Methylobacterium extorquens PA1... 248 e-100
CP001298_1819(CP001298|pid:none) Methylobacterium chloromethanic... 248 e-100
(Q2N695) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 242 e-100
(A0RHK9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 248 e-100
(Q6G1M1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 247 e-100
CP001052_3230(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 238 e-100
(Q28U74) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 241 e-100
CP000859_74(CP000859|pid:none) Desulfococcus oleovorans Hxd3, co... 241 e-100
CP000781_154(CP000781|pid:none) Xanthobacter autotrophicus Py2, ... 241 1e-99
(Q89X60) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 249 1e-99
(B7HDV9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 247 1e-99
(A1UQV9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 247 3e-99
AP007172_32(AP007172|pid:none) Aspergillus oryzae RIB40 genomic ... 224 3e-99
AP009484_833(AP009484|pid:none) Macrococcus caseolyticus JCSC540... 243 3e-99
(A4YKC6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 247 6e-99
(A5E936) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 247 6e-99
(Q819X0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 247 6e-99
(B3Q760) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 244 9e-99
(A5VB78) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 242 1e-98
(Q5HPU5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 239 1e-98
(Q1D6I9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 244 2e-98
EU076379_1(EU076379|pid:none) Blastocystis sp. ATCC 50177 mitoch... 231 2e-98
FN317706_1(FN317706|pid:none) Schistosoma japonicum isolate Anhu... 242 3e-98
CP000496_535(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 226 3e-98
(Q1QQR3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 243 3e-98
(A8MM16) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 243 4e-98
(O94415) RecName: Full=Probable succinyl-CoA ligase [GDP-forming... 243 6e-98
(Q2W063) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 243 1e-97
(Q2IIC1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 249 1e-97
CP001612_481(CP001612|pid:none) Rickettsia africae ESF-5, comple... 228 1e-97
(P53312) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 209 2e-97
FM992695_594(FM992695|pid:none) Candida dubliniensis CD36 chromo... 228 2e-97
CP000781_489(CP000781|pid:none) Xanthobacter autotrophicus Py2, ... 242 2e-97
CP001131_2217(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 248 2e-97
AM295250_877(AM295250|pid:none) Staphylococcus carnosus subsp. c... 238 2e-97
AP009384_4015(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 240 2e-97
CP001100_2246(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 240 2e-97
(Q4ULQ7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 2e-97
(A5ISD0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 240 4e-97
CP001390_241(CP001390|pid:none) Geobacter sp. FRC-32, complete g... 244 5e-97
(Q6GHJ0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 240 5e-97
CP000353_737(CP000353|pid:none) Ralstonia metallidurans CH34 meg... 241 7e-97
(B1YIL7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 242 9e-97
(Q3SVK4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 243 1e-96
(A8EYY8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 1e-96
(Q1IJS5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 233 2e-96
CP000628_3272(CP000628|pid:none) Agrobacterium radiobacter K84 c... 244 3e-96
CP001227_87(CP001227|pid:none) Rickettsia peacockii str. Rustic,... 227 3e-96
(Q1RH55) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 228 6e-96
(A0LZD4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 221 7e-96
AM490515_1(AM490515|pid:none) Herbaspirillum seropedicae sucC ge... 241 7e-96
(O05966) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 226 7e-96
CP001391_1004(CP001391|pid:none) Wolbachia sp. wRi, complete gen... 247 1e-95
(B0T3D1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 242 2e-95
CP001068_462(CP001068|pid:none) Ralstonia pickettii 12J chromoso... 234 2e-95
AP009385_2552(AP009385|pid:none) Burkholderia multivorans ATCC 1... 234 2e-95
(A4JHJ8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 232 2e-95
(A8GUV0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 228 2e-95
(A8GNF5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 227 2e-95
BX294152_3(BX294152|pid:none) Rhodopirellula baltica SH 1 comple... 218 4e-95
AM889285_2951(AM889285|pid:none) Gluconacetobacter diazotrophicu... 232 4e-95
(B5ZSR9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 239 4e-95
(Q7UKI3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 218 4e-95
(A1TW81) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 6e-95
AM494972_317(AM494972|pid:none) Leishmania braziliensis chromoso... 230 1e-94
CU633749_497(CU633749|pid:none) Cupriavidus taiwanensis str. LMG... 234 1e-94
(Q3ATR4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 237 1e-94
(Q2K3F0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 238 2e-94
CP001097_1867(CP001097|pid:none) Chlorobium limicola DSM 245, co... 236 2e-94
(A9IKE3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 228 2e-94
(Q73FW3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 248 2e-94
CP001074_4114(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 238 2e-94
(A1TZS9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 233 2e-94
DQ200398_1(DQ200398|pid:none) Solanum tuberosum clone 071C05 suc... 276 2e-94
CP001110_709(CP001110|pid:none) Pelodictyon phaeoclathratiforme ... 238 3e-94
(Q8Y1Y3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 233 3e-94
CP001013_2688(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 231 3e-94
(A4VKQ1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 236 4e-94
(Q7N6V5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 236 4e-94
CU861906_561(CU861906|pid:none) Ralstonia solanacearum strain Mo... 232 4e-94
(Q3YSV6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 236 4e-94
(Q1MAW1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 239 5e-94
CP000352_469(CP000352|pid:none) Ralstonia metallidurans CH34, co... 232 7e-94
(Q68WU5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 218 9e-94
CP001157_2872(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 239 3e-93
(A3QDH6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 236 3e-93
(A4XV90) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 230 3e-93
(A1KAU3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 227 3e-93
CP001472_2480(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 228 4e-93
CP000698_153(CP000698|pid:none) Geobacter uraniireducens Rf4, co... 234 6e-93
(Q0HJQ4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 232 6e-93
(A0KVX6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 232 6e-93
(Q0I3A8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 232 7e-93
(Q5X7K6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 230 7e-93
(A1JRB6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 7e-93
(A4TNT8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 1e-92
(Q4FVH9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 220 1e-92
(A6T6F6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 1e-92
CP001103_1861(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 230 1e-92
(Q87A98) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 1e-92
CP000941_1922(CP000941|pid:none) Xylella fastidiosa M12, complet... 229 1e-92
(A6Q391) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 220 2e-92
(B5FNF9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 232 2e-92
(Q8EFN8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 2e-92
(Q47AN8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 2e-92
(A9GD65) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 224 3e-92
(Q2S3H9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 223 3e-92
CP000698_4274(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 236 3e-92
(A9MTQ2) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 232 3e-92
(Q0KE75) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 3e-92
(Q15UW6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 228 3e-92
(B7UVD3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 227 3e-92
AP008981_1349(AP008981|pid:none) Orientia tsutsugamushi str. Ike... 231 3e-92
(A8GB83) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 4e-92
AM181176_1782(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 229 4e-92
(Q02K73) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 227 4e-92
(A0KJK9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 226 4e-92
FN313843_1(FN313843|pid:none) Schistosoma japonicum isolate Anhu... 187 5e-92
(A7MQX5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 233 5e-92
CP001277_1700(CP001277|pid:none) Candidatus Hamiltonella defensa... 214 5e-92
CP001321_598(CP001321|pid:none) Haemophilus parasuis SH0165, com... 234 8e-92
AK302311_1(AK302311|pid:none) Homo sapiens cDNA FLJ54097 complet... 242 8e-92
CP000934_1471(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 223 1e-91
(A6TKJ3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 218 1e-91
(Q4KFY6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 1e-91
(B7M5P1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 232 2e-91
(Q5NMF5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 224 2e-91
FM180568_607(FM180568|pid:none) Escherichia coli 0127:H6 E2348/6... 231 3e-91
(Q324I4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 3e-91
CP000961_1822(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 227 3e-91
CP001281_883(CP001281|pid:none) Thauera sp. MZ1T, complete genome. 221 3e-91
(Q6D7G2) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 226 4e-91
(Q6F8L4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 213 4e-91
(A9N8R8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 5e-91
AM942759_564(AM942759|pid:none) Proteus mirabilis strain HI4320,... 229 5e-91
(B1JAV3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 225 5e-91
(Q04QS3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 223 7e-91
(B0KNW8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 226 7e-91
(A5CC52) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 228 7e-91
AM910995_189(AM910995|pid:none) Plasmodium knowlesi strain H chr... 221 9e-91
AY967152_1(AY967152|pid:none) Synthetic construct isolate FTT050... 212 1e-90
(A9KBQ4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 230 1e-90
(Q0T6W6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 1e-90
CU468135_2302(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 226 1e-90
(Q14IV5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 212 1e-90
(A7NDR1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 211 1e-90
CP000915_1117(CP000915|pid:none) Francisella tularensis subsp. m... 211 1e-90
CP001099_1466(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,... 226 1e-90
(Q32IK3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 1e-90
CP001600_2765(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 224 1e-90
(A5UCR4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 2e-90
(Q3KFU6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 2e-90
EU904003_1(EU904003|pid:none) Escherichia coli strain TB182A suc... 228 2e-90
(A8FX46) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 227 2e-90
(Q65SV1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 224 2e-90
FP236842_2436(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 225 3e-90
(Q9JUT0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 221 4e-90
(Q3IGW5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 6e-90
(A3MZH0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 224 6e-90
CP000884_868(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 234 6e-90
(Q482S1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 224 7e-90
(Q0VPF7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 220 7e-90
(A5WC33) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 214 7e-90
(A9M4F8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 222 1e-89
(A5UIW0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 1e-89
(Q31FV4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 226 1e-89
CP000687_454(CP000687|pid:none) Actinobacillus pleuropneumoniae ... 224 1e-89
(A4SZY0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 224 1e-89
(Q9JZP4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 220 1e-89
(A3M887) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 215 1e-89
AL954747_50(AL954747|pid:none) Nitrosomonas europaea ATCC 19718,... 237 2e-89
(B2V8I4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 2e-89
(B0RPQ9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 223 2e-89
(A6VPM2) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 2e-89
(Q8PHL5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 224 3e-89
(Q3BQ83) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 224 3e-89
CP001230_1121(CP001230|pid:none) Persephonella marina EX-H1, com... 223 3e-89
(A1KTM6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 220 3e-89
CP001349_6804(CP001349|pid:none) Methylobacterium nodulans ORS 2... 226 4e-89
(P45101) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 4e-89
(Q5F878) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 219 4e-89
(B4U901) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 236 5e-89
(Q4QLA3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 231 6e-89
CP001089_2691(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 212 6e-89
(Q87RE8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 229 8e-89
CP000148_721(CP000148|pid:none) Geobacter metallireducens GS-15,... 210 8e-89
CP000450_212(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 239 1e-88
CU468230_727(CU468230|pid:none) Acinetobacter baumannii str. SDF... 215 1e-88
CP001124_258(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 209 1e-88
(Q4FP29) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 236 2e-88
(A7N158) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 228 2e-88
CP000698_3924(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 210 7e-88
(A1WZ92) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 223 1e-87
(Q6ARL2) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 227 1e-87
CP001280_1678(CP001280|pid:none) Methylocella silvestris BL2, co... 219 2e-87
CP000769_3683(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 221 3e-87
(A0LIY8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 228 6e-87
CP001001_3615(CP001001|pid:none) Methylobacterium radiotolerans ... 213 3e-86
(B5EMG2) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 227 4e-86
CP000908_1769(CP000908|pid:none) Methylobacterium extorquens PA1... 214 6e-86
CP000555_3248(CP000555|pid:none) Methylibium petroleiphilum PM1,... 221 8e-86
AE017282_907(AE017282|pid:none) Methylococcus capsulatus str. Ba... 218 8e-86
(P53594) RecName: Full=Malate--CoA ligase subunit beta; ... 214 1e-85
CP000394_52(CP000394|pid:none) Granulibacter bethesdensis CGDNIH... 217 1e-85
(Q3SKM1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 214 2e-85
AB124582_4(AB124582|pid:none) Hydrogenobacter thermophilus genes... 221 3e-85
CP000127_671(CP000127|pid:none) Nitrosococcus oceani ATCC 19707,... 213 5e-85
CT573073_197(CT573073|pid:none) Kuenenia stuttgartiensis genome ... 200 7e-85
(A5EX54) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 222 4e-83
CP000450_585(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 215 2e-82
(A1APQ8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 194 2e-82
CP000243_4532(CP000243|pid:none) Escherichia coli UTI89, complet... 213 2e-82
CP000103_1073(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 216 3e-81
(Q5HVN3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 206 2e-80
AL157369_3(AL157369|pid:none) Human DNA sequence from clone RP11... 166 2e-80
(Q3A7Y4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 195 3e-80
BA000021_417(BA000021|pid:none) Wigglesworthia glossinidia endos... 202 6e-80
EU016581_6(EU016581|pid:none) Uncultured marine microorganism HF... 205 1e-79
(A7H4K9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 203 1e-79
(A8FKV6) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 203 1e-79
CP000975_1040(CP000975|pid:none) Methylacidiphilum infernorum V4... 200 2e-79
(A1VYP2) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 203 2e-79
CP000830_2476(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 204 5e-79
(Q6MBM7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 203 3e-76
CP000875_4548(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 189 9e-76
(Q822A1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 192 4e-74
(Q5L593) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 188 1e-73
AK221149_1(AK221149|pid:none) Arabidopsis thaliana mRNA for succ... 278 3e-73
AM920435_1008(AM920435|pid:none) Penicillium chrysogenum Wiscons... 183 5e-73
(A5V080) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 179 3e-72
(Q255N7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 187 7e-72
(A7NNW3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 179 1e-71
CP001337_2020(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 171 3e-71
(A7GYI5) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 179 5e-71
AP009153_1646(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 187 8e-71
AP007157_319(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 187 3e-70
AE017221_170(AE017221|pid:none) Thermus thermophilus HB27, compl... 162 3e-69
AP008226_538(AP008226|pid:none) Thermus thermophilus HB8 genomic... 162 6e-69
(P25126) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 162 1e-68
(Q8A9M7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 189 8e-68
FM872308_838(FM872308|pid:none) Chlamydia trachomatis JALI20 ser... 184 1e-67
FM872307_839(FM872307|pid:none) Chlamydia trachomatis B/TZ1A828/... 182 2e-67
(Q1AWI8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 156 1e-65
AM180088_1926(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 150 4e-65
CP000016_321(CP000016|pid:none) Candidatus Blochmannia pennsylva... 164 8e-65
(A4WL16) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 160 1e-64
L06944_1(L06944|pid:none) Sus scrofa succinyl-CoA synthetase bet... 249 2e-64
A44529(A44529)succinate-CoA ligase (GDP-forming) (EC 6.2.1.4) be... 249 2e-64
BT030582_1(BT030582|pid:none) Bos taurus Homo sapiens similar to... 249 2e-64
(Q96I99) RecName: Full=Succinyl-CoA ligase [GDP-forming] subunit... 248 3e-64
BC019868_1(BC019868|pid:none) Homo sapiens, clone IMAGE:4996134,... 248 3e-64
AE004437_1182(AE004437|pid:none) Halobacterium sp. NRC-1, comple... 143 5e-64
CP001365_2178(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 147 5e-64
(O28732) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 164 1e-63
AE000782_1521(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 164 1e-63
AJ293311_7(AJ293311|pid:none) Rickettsia rickettsii ompR gene (p... 228 2e-63
AJ293312_7(AJ293312|pid:none) Rickettsia montanensis ompR gene (... 228 3e-63
BX248583_314(BX248583|pid:none) Blochmannia floridanus complete ... 152 3e-63
(Q5V4Q4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 143 7e-63
(P53587) RecName: Full=Succinyl-CoA ligase [GDP-forming] subunit... 243 9e-63
(Q6A6Y0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 160 1e-62
(Q5LCW4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 175 1e-62
CP001014_1430(CP001014|pid:none) Thermoproteus neutrophilus V24S... 159 1e-62
(Q9AB94) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 243 2e-62
AL080096_1(AL080096|pid:none) Homo sapiens mRNA; cDNA DKFZp564P2... 242 2e-62
T12480(T12480)hypothetical protein DKFZp564P2062.1 - human (frag... 242 2e-62
BC052774_1(BC052774|pid:none) Mus musculus succinate-Coenzyme A ... 242 3e-62
(Q3INN3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 144 3e-62
BA000035_2446(BA000035|pid:none) Corynebacterium efficiens YS-31... 158 8e-62
(A4FP60) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 160 1e-61
(Q5HC25) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 239 2e-61
BA000030_3459(BA000030|pid:none) Streptomyces avermitilis MA-468... 154 2e-61
(Q5FH54) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 239 2e-61
CU458896_1043(CU458896|pid:none) Mycobacterium abscessus chromos... 150 2e-61
CP000750_3970(CP000750|pid:none) Kineococcus radiotolerans SRS30... 158 9e-61
CT573213_1119(CT573213|pid:none) Frankia alni str. ACN14A chromo... 164 9e-61
AJ621270_1(AJ621270|pid:none) Thermoproteus tenax sucC gene for ... 158 3e-60
CP001618_2996(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 159 3e-60
FN357619_8(FN357619|pid:none) Schistosoma mansoni genome sequenc... 235 3e-60
CP001114_1281(CP001114|pid:none) Deinococcus deserti VCD115, com... 146 4e-60
(A1KH85) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 159 6e-60
AP011115_5642(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 154 6e-60
CP000854_4485(CP000854|pid:none) Mycobacterium marinum M, comple... 156 9e-60
(A0PWD1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 156 9e-60
(A5U0Z1) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 157 2e-59
CP000852_1193(CP000852|pid:none) Caldivirga maquilingensis IC-16... 156 2e-59
(Q122H7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 232 3e-59
(A1UL96) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 150 5e-59
(Q5YPP8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 150 8e-59
DQ457191_1(DQ457191|pid:none) Toxoplasma gondii mitochondrial pu... 230 1e-58
(A1R3M0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 150 7e-58
(Q9RUY3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 146 7e-58
CP000493_194(CP000493|pid:none) Hyperthermus butylicus DSM 5456,... 148 9e-58
(A0LRU4) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 149 1e-57
AX065441_1(AX065441|pid:none) Sequence 567 from Patent WO0100844... 142 1e-57
CP001341_924(CP001341|pid:none) Arthrobacter chlorophenolicus A6... 150 3e-57
AP009044_2519(AP009044|pid:none) Corynebacterium glutamicum R DN... 139 9e-57
AM849034_2550(AM849034|pid:none) Clavibacter michiganensis subsp... 150 2e-56
CP001034_2362(CP001034|pid:none) Natranaerobius thermophilus JW/... 146 4e-56
AB221128_1(AB221128|pid:none) Pelotomaculum thermopropionicum mm... 148 6e-55
CP000141_889(CP000141|pid:none) Carboxydothermus hydrogenoforman... 133 3e-54
CP000362_3952(CP000362|pid:none) Roseobacter denitrificans OCh 1... 214 8e-54
CP000102_1338(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 137 3e-53
(Q30RQ3) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 209 2e-52
CP000777_1956(CP000777|pid:none) Leptospira biflexa serovar Pato... 208 4e-52
AK294598_1(AK294598|pid:none) Homo sapiens cDNA FLJ50080 complet... 207 7e-52
B72706(B72706)probable succinyl-CoA synthetase beta chain APE106... 139 1e-51
BA000002_732(BA000002|pid:none) Aeropyrum pernix K1 DNA, complet... 139 2e-51
BA000011_275(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 149 4e-51
(A0RPE8) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 204 6e-51
(O27115) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 129 2e-50
AP008230_982(AP008230|pid:none) Desulfitobacterium hafniense Y51... 122 3e-50
AE009439_731(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 126 8e-50
AE017261_1003(AE017261|pid:none) Picrophilus torridus DSM 9790, ... 136 1e-49
(Q57663) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 121 2e-49
CP000930_391(CP000930|pid:none) Heliobacterium modesticaldum Ice... 129 5e-49
AY811842_1(AY811842|pid:none) Schistosoma japonicum SJCHGC05155 ... 175 8e-49
AP008230_245(AP008230|pid:none) Desulfitobacterium hafniense Y51... 122 9e-48
CP001336_189(CP001336|pid:none) Desulfitobacterium hafniense DCB... 122 2e-47
CP000866_1119(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 126 1e-45
CP000254_92(CP000254|pid:none) Methanospirillum hungatei JF-1, c... 134 2e-45
CP001196_2696(CP001196|pid:none) Oligotropha carboxidovorans OM5... 122 5e-45
CP000867_1548(CP000867|pid:none) Methanococcus maripaludis C6, c... 124 9e-45
CP000745_353(CP000745|pid:none) Methanococcus maripaludis C7, co... 120 1e-44
CP001338_1854(CP001338|pid:none) Candidatus Methanosphaerula pal... 135 4e-44
CP000780_721(CP000780|pid:none) Candidatus Methanoregula boonei ... 136 1e-43
BX950229_1105(BX950229|pid:none) Methanococcus maripaludis strai... 121 2e-43
CP000682_1560(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 137 4e-43
(A3DLR9) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 176 1e-42
CP000463_3177(CP000463|pid:none) Rhodopseudomonas palustris BisA... 117 1e-41
EU016640_28(EU016640|pid:none) Uncultured Group I marine crenarc... 124 4e-41
CP001298_4030(CP001298|pid:none) Methylobacterium chloromethanic... 130 5e-40
CP000968_1378(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 167 8e-40
BA000023_1041(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 141 1e-39
(O28097) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 166 2e-39
AY387892_1(AY387892|pid:none) Bacillus sp. AH 1123 succinyl-CoA ... 158 5e-39
CP001140_1038(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 164 9e-39
(O87840) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 164 9e-39
AY387909_1(AY387909|pid:none) Bacillus sp. AH 547 succinyl-CoA s... 155 1e-38
AY387896_1(AY387896|pid:none) Bacillus sp. AH 1247 succinyl-CoA ... 155 2e-38
AY387859_1(AY387859|pid:none) Bacillus sp. AH 1127 succinyl-CoA ... 155 3e-38
CP000088_2570(CP000088|pid:none) Thermobifida fusca YX, complete... 161 6e-38
AM920428_1329(AM920428|pid:none) Penicillium chrysogenum Wiscons... 160 8e-38
AY387897_1(AY387897|pid:none) Bacillus sp. AH 1270 succinyl-CoA ... 155 9e-38
AY387891_1(AY387891|pid:none) Bacillus thuringiensis strain AH 1... 154 9e-38
AY387908_1(AY387908|pid:none) Bacillus sp. AH 546 succinyl-CoA s... 154 2e-37
(Q0S533) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 159 2e-37
AP008957_4429(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 159 2e-37
CP000252_20(CP000252|pid:none) Syntrophus aciditrophicus SB, com... 100 6e-37
(A3MWQ7) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 157 9e-37
CP001400_272(CP001400|pid:none) Sulfolobus islandicus M.14.25, c... 155 3e-36
AE006641_2269(AE006641|pid:none) Sulfolobus solfataricus P2, com... 155 3e-36
CP001401_274(CP001401|pid:none) Sulfolobus islandicus M.16.27, c... 155 3e-36
AY387866_1(AY387866|pid:none) Bacillus sp. AH 407 succinyl-CoA s... 155 3e-36
AY387899_1(AY387899|pid:none) Bacillus sp. AH 1272 succinyl-CoA ... 155 3e-36
AY387923_1(AY387923|pid:none) Bacillus sp. AH 685 succinyl-CoA s... 154 6e-36
(A0QBP0) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit... 152 3e-35
CP000112_2330(CP000112|pid:none) Desulfovibrio desulfuricans G20... 115 5e-35
AY815062_1(AY815062|pid:none) Schistosoma japonicum SJCHGC05557 ... 92 2e-34
AY813442_1(AY813442|pid:none) Schistosoma japonicum SJCHGC06370 ... 144 8e-33
CP001196_2526(CP001196|pid:none) Oligotropha carboxidovorans OM5... 140 1e-31
BC030947_1(BC030947|pid:none) Mus musculus succinate-Coenzyme A ... 135 3e-30
CR954204_459(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 132 3e-29
AB196983_3(AB196983|pid:none) Acidithiobacillus thiooxidans aco,... 113 5e-29
AJ720176_1(AJ720176|pid:none) Gallus gallus mRNA for hypothetica... 131 7e-29
CP000716_1822(CP000716|pid:none) Thermosipho melanesiensis BI429... 129 3e-28
AL157369_4(AL157369|pid:none) Human DNA sequence from clone RP11... 80 2e-27
CP000527_1091(CP000527|pid:none) Desulfovibrio vulgaris subsp. v... 126 2e-27
AE000657_904(AE000657|pid:none) Aquifex aeolicus VF5, complete g... 81 2e-26
AL050226_1(AL050226|pid:none) Homo sapiens mRNA; cDNA DKFZp586M2... 121 7e-26
AP008230_1926(AP008230|pid:none) Desulfitobacterium hafniense Y5... 87 4e-25
DQ848941_1(DQ848941|pid:none) Scophthalmus maximus clone sba535 ... 109 2e-22
AF244654_1(AF244654|pid:none) Carboxydothermus hydrogenoformans ... 107 1e-21
CP001037_4712(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 69 1e-21
AL157369_5(AL157369|pid:none) Human DNA sequence from clone RP11... 104 7e-21
AY915365_1(AY915365|pid:none) Schistosoma japonicum SJCHGC05313 ... 103 1e-20
CP000806_2355(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 71 5e-20
DQ780073_1(DQ780073|pid:none) Endoriftia persephone 'Hot96_1+Hot... 95 5e-18
CP000771_1352(CP000771|pid:none) Fervidobacterium nodosum Rt17-B... 94 1e-17
AJ002750_3(AJ002750|pid:none) Rhizobium leguminosarum mdh gene a... 92 6e-17
CP001287_510(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 59 6e-17
AY998639_1(AY998639|pid:none) Pelodiscus sinensis ATP synthetase... 91 8e-17
CP001291_294(CP001291|pid:none) Cyanothece sp. PCC 7424, complet... 61 7e-16
EU379700_1(EU379700|pid:none) Alteromonas macleodii strain 7 suc... 67 2e-15
AP009180_100(AP009180|pid:none) Candidatus Carsonella ruddii PV ... 84 2e-14
AK003867_1(AK003867|pid:none) Mus musculus 18-day embryo whole b... 83 3e-14
CP000096_1031(CP000096|pid:none) Pelodictyon luteolum DSM 273, c... 52 4e-14
CP000492_1261(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 52 1e-13
CP001097_1191(CP001097|pid:none) Chlorobium limicola DSM 245, co... 52 5e-13
CP001100_2530(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 55 6e-13
AB054669_1(AB054669|pid:none) Chlorobium limicola aclB gene for ... 52 1e-12
CP001101_1291(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 51 3e-12
AX885525_1(AX885525|pid:none) Sequence 1388 from Patent EP1033401. 76 3e-12
CP001099_987(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 50 4e-12
AE006470_1079(AE006470|pid:none) Chlorobium tepidum TLS, complet... 50 1e-11
DQ306920_1(DQ306920|pid:none) Bos taurus ATP-specific succinyl-C... 74 1e-11
AE014296_1025(AE014296|pid:none) Drosophila melanogaster chromos... 70 2e-10
F72706(F72706)hypothetical protein APE1069 - Aeropyrum pernix (s... 66 3e-09
CP001108_1058(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 43 4e-09
AB062764_3(AB062764|pid:none) Acidithiobacillus thiooxidans aco,... 65 5e-09
FN371540_1(FN371540|pid:none) Schistosoma mansoni genome sequenc... 64 1e-08
BA000035_2447(BA000035|pid:none) Corynebacterium efficiens YS-31... 61 1e-07
CP000471_3595(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 56 4e-06
CP000607_853(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 53 3e-05
DQ333983_1(DQ333983|pid:none) Spermophilus parryii clone SP00022... 52 4e-05
CP000124_964(CP000124|pid:none) Burkholderia pseudomallei 1710b ... 52 5e-05
CP001080_543(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 45 0.008
CP000107_793(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 43 0.024
CP000859_137(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c... 43 0.031
BA000030_3835(BA000030|pid:none) Streptomyces avermitilis MA-468... 42 0.053
CP000866_1305(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 41 0.091
CP000236_958(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan... 41 0.091
AE016877_264(AE016877|pid:none) Bacillus cereus ATCC 14579, comp... 41 0.12
CP000903_277(CP000903|pid:none) Bacillus weihenstephanensis KBAB... 40 0.16
AE017194_328(AE017194|pid:none) Bacillus cereus ATCC 10987, comp... 40 0.16
AY929802_1(AY929802|pid:none) Sulfurovum lithotrophicum strain B... 40 0.27
CP001186_265(CP001186|pid:none) Bacillus cereus G9842, complete ... 40 0.27
AM286690_2016(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 39 0.45
CP001087_920(CP001087|pid:none) Desulfobacterium autotrophicum H... 39 0.45
CP000148_300(CP000148|pid:none) Geobacter metallireducens GS-15,... 39 0.45
CP001055_506(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 39 0.59
EU622913_1(EU622913|pid:none) Cricetulus griseus phosphoribosylg... 39 0.59
CP000001_264(CP000001|pid:none) Bacillus cereus E33L, complete g... 39 0.59
CP001177_279(CP001177|pid:none) Bacillus cereus AH187, complete ... 39 0.59
EF655902_7(EF655902|pid:none) Uncultured Acidobacteria bacterium... 38 0.77
AE000782_919(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,... 38 0.77
CP000088_1300(CP000088|pid:none) Thermobifida fusca YX, complete... 38 0.77
EU956969_1(EU956969|pid:none) Zea mays clone 1579046 phosphoribo... 38 1.0
CP001087_2166(CP001087|pid:none) Desulfobacterium autotrophicum ... 38 1.0
(P52420) RecName: Full=Phosphoribosylamine--glycine ligase, chlo... 38 1.0
S37104(S37104)phosphoribosylamine-glycine ligase (EC 6.3.4.13) -... 38 1.0
CR767821_803(CR767821|pid:none) Ehrlichia ruminantium strain Wel... 38 1.0
BT054325_1(BT054325|pid:none) Zea mays full-length cDNA clone ZM... 38 1.0
EU016629_24(EU016629|pid:none) Uncultured marine microorganism H... 38 1.0
CR925677_811(CR925677|pid:none) Ehrlichia ruminantium str. Garde... 38 1.0
AY929800_1(AY929800|pid:none) Thioreductor micantisoli strain BK... 37 1.3

>AC115594_9(AC115594|pid:none) Dictyostelium discoideum chromosome 2
map 4071862-4101005 strain AX4, complete sequence.
Length = 445

Score = 259 bits (663), Expect(2) = e-126
Identities = 124/187 (66%), Positives = 156/187 (83%)
Frame = +2

Query: 743 VEINPFAETTDGQVICMDAKINFDDNASFRQKEIFEMRDTAEEDPREVEAGKFGLNYIGL 922
VEINP AET G V+CMDAK+NFDDNA+FR +IF++RD ++EDPREV+A +F LNYIGL
Sbjct: 237 VEINPLAETASGDVLCMDAKLNFDDNAAFRHPDIFKLRDKSQEDPREVKAAEFDLNYIGL 296

Query: 923 DGNIGCMVNGAGLAMATMDIIKLKGGIPANFLDVGGSASEQAVTEAFKILTKDPRVKCLL 1102
DGNIGC+VNGAGLAMA+MDIIKL GG PANFLDVGG A+++ VTEA K+++ D +VK +L
Sbjct: 297 DGNIGCLVNGAGLAMASMDIIKLYGGSPANFLDVGGGATQKQVTEAIKLISSDKKVKSIL 356

Query: 1103 VNIFGGIMKCDIIASGIVNASKQVGLKIPLVVRLEGTNVNIGKEILEKSGLNITSASDLD 1282
VNIFGGIMKCD+IA GI+ A K++ + PLVVRL+GTNV K+I+E SGL + +A +LD
Sbjct: 357 VNIFGGIMKCDVIALGIIAALKELSIATPLVVRLQGTNVEAAKKIMEDSGLRLIAADNLD 416

Query: 1283 DAAIKAV 1303
DAA K+V
Sbjct: 417 DAAQKSV 423

Score = 216 bits (551), Expect(2) = e-126
Identities = 111/207 (53%), Positives = 145/207 (70%), Gaps = 1/207 (0%)
Frame = +1

Query: 121 YQVRYLNLHEYQSKSLMDKYGVNTQKWRVVTKASDAIKAASELNGE-LVVKAQVHAGGRG 297
YQ R+LN+HEYQ++ +M YG+N V +A K A +N + LVVKAQV AGGRG
Sbjct: 30 YQKRFLNVHEYQAQKMMKSYGINCPVGNVAETPEEAEKIAEVMNTQDLVVKAQVLAGGRG 89

Query: 298 KGSFIETGFKGGVHLCKTGKEAERLCDEMLGKHLVTKQTTKEGTKVQSVMLAESVDPKRE 477
KG F +G KGGV LC + ++ ++ +MLG LVTKQT ++G V V + E ++E
Sbjct: 90 KGIFT-SGLKGGVQLCSSAEDVKKFASKMLGHTLVTKQTGEDGKVVHQVYVTERHFLRKE 148

Query: 478 LYFAIVMDRKYGGPVMIASPQGGVDIESVAEETPDLIFKEPIDIVKGIRPEQTKNLAEKL 657
+YFAI+MDRK GGPVM+ASP+GGVDIE VA + P IFKEPIDI+ G++PEQTK LAEKL
Sbjct: 149 MYFAILMDRKAGGPVMVASPEGGVDIEGVARDNPSAIFKEPIDIMIGVQPEQTKRLAEKL 208

Query: 658 GFTGEKAKIAQQQMENLYQLFIKSDAT 738
GF+ + +AQ QM+ LY FIK+D T
Sbjct: 209 GFSKKNISMAQDQMKKLYDFFIKNDCT 235

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,081,632,853
Number of extensions: 42231387
Number of successful extensions: 124965
Number of sequences better than 10.0: 552
Number of HSP's gapped: 124013
Number of HSP's successfully gapped: 991
Length of query: 468
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 336
Effective length of database: 618,001,159
Effective search space: 207648389424
Effective search space used: 207648389424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.86 gvh: 0.37 alm: 0.49 top: 0.57 tms: 0.00 mit: 0.32 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for Contig-U09871-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 33
AH (FL, L) 0
AF (FL, S) 23
SL (DIR, L) 2
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 8
CH (FL, L) 0
CF (FL, S) 5
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0