| Contig-U09858-1 |
| Contig ID |
Contig-U09858-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1203 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
4413392 |
| End point |
4414595 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
27 |
| Number of EST |
35 |
| Link to clone list |
U09858 |
| List of clone(s) |
est1=VFE423F,1,596
est2=AFH820F,2,542
est3=SFA134F,2,504
est4=SFA810E,2,1204
est5=VFL817F,2,311
est6=SFD771F,3,601
est7=AFA476F,4,543
est8=AFF801F,4,632
est9=SFC339F,7,552
est10=SFA371F,8,494
est11=AFN633E,11,1146
est12=AFB590F,19,552
est13=AFF280F,19,540
est14=CFC815F,19,444
est15=CFH263F,19,570
est16=SFE204F,19,552
est17=AFA504F,25,603
est18=AFG270F,25,577
est19=VFD220E,25,1197
est20=VFH384F,25,541
est21=VFO417F,25,571
est22=AFJ507F,33,685
est23=SLB153E,36,1204
est24=VSI649E,479,1178
est25=SFC339Z,518,1193
est26=SFE204Z,526,1185
est27=SFA134Z,539,1176
est28=AFG270Z,552,1193
est29=VFO417Z,564,1172
est30=CFC815Z,612,1194
est31=VFH384Z,621,1136
est32=SFA371Z,628,1188
est33=VSB510Z,641,1204
est34=SLC726E,813,1194
est35=SLJ711Z,1081,1204
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.18 |
| Homology vs DNA |
Query= Contig-U09858-1 (Contig-U09858-1Q) /CSM_Contig/Contig-U09858-1Q.Seq.d
(1203 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU033546) Dictyostelium discoideum slug cDNA, clone SLB153. 1179 0.0 1
(BJ430389) Dictyostelium discoideum cDNA clone:ddv7g06, 3' e... 1176 0.0 1
(AF103870) Dictyostelium discoideum repC-binding protein A (... 1172 0.0 1
(BJ345610) Dictyostelium discoideum cDNA clone:dda28a10, 3' ... 1146 0.0 1
(BJ342364) Dictyostelium discoideum cDNA clone:dda13k18, 3' ... 1146 0.0 2
(BJ400172) Dictyostelium discoideum cDNA clone:dds9g02, 3' e... 1138 0.0 1
(BJ435931) Dictyostelium discoideum cDNA clone:ddv29b06, 3' ... 1116 0.0 1
(BJ398618) Dictyostelium discoideum cDNA clone:dds1c09, 3' e... 1104 0.0 1
(BJ374259) Dictyostelium discoideum cDNA clone:ddc6n04, 3' e... 1059 0.0 1
(AU262059) Dictyostelium discoideum vegetative cDNA clone:VS... 1035 0.0 1
(BJ399320) Dictyostelium discoideum cDNA clone:dds5n09, 3' e... 821 0.0 2
(BJ398753) Dictyostelium discoideum cDNA clone:dds2d04, 3' e... 714 0.0 2
(BJ398701) Dictyostelium discoideum cDNA clone:dds1n17, 3' e... 995 0.0 2
(BJ431861) Dictyostelium discoideum cDNA clone:ddv15h21, 3' ... 856 0.0 2
(AU269023) Dictyostelium discoideum vegetative cDNA clone:VS... 684 0.0 3
(AU269022) Dictyostelium discoideum vegetative cDNA clone:VS... 436 0.0 2
(BJ327362) Dictyostelium discoideum cDNA clone:dda20m01, 5' ... 381 e-174 4
(BJ323733) Dictyostelium discoideum cDNA clone:dda12b02, 5' ... 381 e-149 4
(AU034346) Dictyostelium discoideum slug cDNA, clone SLC726. 507 e-139 1
(BJ328451) Dictyostelium discoideum cDNA clone:dda28a10, 5' ... 381 e-135 4
(AU060696) Dictyostelium discoideum slug cDNA, clone SLB153. 381 e-134 4
(BJ325746) Dictyostelium discoideum cDNA clone:dda2g01, 5' e... 381 e-132 4
(BJ412137) Dictyostelium discoideum cDNA clone:ddv7g06, 5' e... 381 e-132 4
(BJ329882) Dictyostelium discoideum cDNA clone:dda26j17, 5' ... 381 e-132 4
(BJ388262) Dictyostelium discoideum cDNA clone:dds8n17, 5' e... 381 e-130 4
(BJ387366) Dictyostelium discoideum cDNA clone:dds2d04, 5' e... 381 e-130 4
(BJ412603) Dictyostelium discoideum cDNA clone:ddv9n06, 5' e... 381 e-128 4
(BJ387327) Dictyostelium discoideum cDNA clone:dds1n17, 5' e... 381 e-118 3
(BJ387278) Dictyostelium discoideum cDNA clone:dds1c09, 5' e... 381 e-118 3
(BJ323720) Dictyostelium discoideum cDNA clone:dda11o20, 5' ... 381 e-118 3
(BJ388343) Dictyostelium discoideum cDNA clone:dds9g02, 5' e... 381 e-118 3
(BJ326331) Dictyostelium discoideum cDNA clone:dda16h06, 5' ... 381 e-118 3
(BJ325655) Dictyostelium discoideum cDNA clone:dda1h20, 5' e... 381 e-118 3
(BJ387851) Dictyostelium discoideum cDNA clone:dds5n09, 5' e... 381 e-118 3
(BJ416982) Dictyostelium discoideum cDNA clone:ddv29b06, 5' ... 381 e-118 3
(BJ325285) Dictyostelium discoideum cDNA clone:dda13k18, 5' ... 381 e-118 3
(BJ324100) Dictyostelium discoideum cDNA clone:dda4c23, 5' e... 381 e-113 3
(BJ359626) Dictyostelium discoideum cDNA clone:ddc15m16, 5' ... 381 e-113 3
(BJ360457) Dictyostelium discoideum cDNA clone:ddc6n04, 5' e... 381 e-110 2
(BJ417865) Dictyostelium discoideum cDNA clone:ddv15h21, 5' ... 369 e-105 2
(AU053800) Dictyostelium discoideum slug cDNA, clone SLJ711. 272 3e-68 1
(BJ415870) Dictyostelium discoideum cDNA clone:ddv24b06, 5' ... 226 1e-63 2
(AU060429) Dictyostelium discoideum slug cDNA, clone SLJ711. 72 3e-10 2
(BI862953) rm14e07.y1 Meloidogyne arenaria egg pAMP1 v1 Chia... 56 2e-04 2
(EB811906) 3760_E22 Botrytis cinerea expressed sequence tags... 48 0.004 2
(FF492646) G708P5218RB2.T0 Acorn worm normalized gastrula pE... 50 0.012 2
(FF448332) G178P60097RD7.T0 Acorn worm gastrula/neurula pCMV... 50 0.012 2
(FF449273) G178P60111RH7.T0 Acorn worm gastrula/neurula pCMV... 50 0.012 2
(FF515747) G709P590RF8.T0 Acorn worm normalized neurula pExp... 50 0.013 2
(CU855664) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 54 0.013 1
(FF523829) G710P5280RD3.T0 Acorn worm normalized juvenile pE... 50 0.013 2
(FF500483) G709P5113RG2.T0 Acorn worm normalized neurula pEx... 50 0.014 2
(FF504934) G709P518RG5.T0 Acorn worm normalized neurula pExp... 50 0.014 2
(EY819019) PT11-C1-901-004-E12-CT.F Poncirus trifoliata leaf... 52 0.017 2
(EY823407) PT11-C1-901-050-E05-CT.F Poncirus trifoliata leaf... 52 0.017 2
(FD700682) CAAA10392.fwd CAAA Petromyzon marinus Petromyzon ... 36 0.040 2
(FD715655) CAAA19011.fwd CAAA Petromyzon marinus Petromyzon ... 36 0.040 2
(AC122955) Rattus norvegicus clone CH230-66H17, *** SEQUENCI... 52 0.050 1
(AC117085) Rattus norvegicus clone CH230-247G13, WORKING DRA... 52 0.050 1
(AC103081) Rattus norvegicus clone CH230-226H16, WORKING DRA... 52 0.050 1
(EC999412) ROE00011065 Rhizopus oryzae Company Rhizopus oryz... 52 0.050 1
(CZ400233) ZMMBF0181D07f ZMMBF Zea mays genomic clone ZMMBF0... 34 0.051 3
(AW332072) S3H5 AGS-1 Pneumocystis carinii cDNA 3', mRNA seq... 40 0.14 2
(ES391978) MUS02-F08.x1d-t SHGC-MUS Mytilus californianus cD... 50 0.20 1
(ES391405) MUS06-N06.y1d-s SHGC-MUS Mytilus californianus cD... 50 0.20 1
(DY888283) CeleSEQ5109 Cunninghamella elegans pBluescript (E... 50 0.20 1
(CK086856) AmeR240 Limulus hemocyte ESTs 3-6 h rev Carcinosc... 50 0.20 1
(FF496406) G708P53RC1.T0 Acorn worm normalized gastrula pExp... 50 0.20 1
(AL116512) Botrytis cinerea strain T4 cDNA library. 48 0.78 1
(AL158800) Human chromosome 14 DNA sequence BAC R-359N5 of l... 48 0.78 1
(AC131485) Lytechinus variegatus clone Lv183H12, *** SEQUENC... 48 0.78 1
(AC094771) Rattus norvegicus clone CH230-5P4, *** SEQUENCING... 48 0.78 1
(CU469565) Medicago truncatula chromosome 5 clone mte1-9k20,... 48 0.78 1
(EK002188) 1093025620762 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.78 1
(AG629953) Macaca fuscata fuscata DNA, clone: MSB2-030F16_F,... 48 0.78 1
(EL567650) Physarum04296 Physarum polycephalum starvation st... 48 0.78 1
(DY772854) 5TH_new06_E01 Bicyclus anynana wings - 5TH instar... 48 0.78 1
(DV038367) AcF000894 Specific subtracted floral cDNA library... 48 0.78 1
(DT603500) she01-29ms3-h04 She01 Saruma henryi cDNA clone sh... 48 0.78 1
(CX535355) s13dNF85B07MJ061_388879 Methyl Jasmonate-Elicited... 48 0.78 1
(BI309150) EST530560 GPOD Medicago truncatula cDNA clone pGP... 48 0.78 1
(FE755051) CAYF4108.b3 CAYF Petrolisthes cinctipes heart, wh... 48 0.78 1
(CP000879) Petrotoga mobilis SJ95, complete genome. 48 0.78 1
(AC130903) Rattus norvegicus clone CH230-215I17, *** SEQUENC... 34 1.5 2
(AL096841) Human DNA sequence from clone RP4-575L21 on chrom... 32 1.6 2
(EH773998) CNSM6387.b1_E14.ab1 CNS(LMS) yellow starthistle C... 34 1.6 3
(DW023006) PMAD-aae94j07.g1 Lamprey_WGS_pCMV-sport6 Petromyz... 34 2.1 2
(EH665080) 17H03 Transformed tobacco Lambda Zap II library N... 34 2.1 2
(EG328742) MGC13nov.3.1.L1.1.D09.R.1 NIH_MGC_331 Homo sapien... 32 2.2 2
(C94248) Dictyostelium discoideum slug cDNA, clone SSK591. 40 2.5 2
(BX284624) Mouse DNA sequence from clone RP23-299A2 on chrom... 46 3.1 1
(AC154375) Mus musculus BAC clone RP23-69H21 from chromosome... 46 3.1 1
(AC133193) Mus musculus BAC clone RP23-396L1 from chromosome... 46 3.1 1
(EA427585) Sequence 47 from patent US 7332281. 46 3.1 1
(DL007604) NOVEL THERAPEUTIC TARGETS IN CANCER. 46 3.1 1
(AR555852) Sequence 10983 from patent US 6747137. 46 3.1 1
(AR319114) Sequence 1664 from patent US 6562958. 46 3.1 1
(CT005266) Leishmania major chromosome 28 strain Friedlin, c... 46 3.1 1
(AC224333) Bos taurus clone CH240-488A6, WORKING DRAFT SEQUE... 46 3.1 1
(AC220362) Bos taurus clone CH240-360M8, WORKING DRAFT SEQUE... 46 3.1 1
>(AU033546) Dictyostelium discoideum slug cDNA, clone SLB153.
Length = 715
Score = 1179 bits (595), Expect = 0.0
Identities = 595/595 (100%)
Strand = Plus / Plus
Query: 568 ggttcaacctctacaacttcaccacaacaatcctctgatttcgccaccggcactgaatta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 ggttcaacctctacaacttcaccacaacaatcctctgatttcgccaccggcactgaatta 138
Query: 628 gaagccacaattaaaaatattacagatatgggttttgcaagagatcaagttttaagagca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gaagccacaattaaaaatattacagatatgggttttgcaagagatcaagttttaagagca 198
Query: 688 ctcagacttacctttaacaatgctgaacgtgctattgaatatttagttagtggaaatatt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctcagacttacctttaacaatgctgaacgtgctattgaatatttagttagtggaaatatt 258
Query: 748 ccagctgcaaatgatccagaagatgaagaagaaatggaaggtggtggtggtagtggtgat 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccagctgcaaatgatccagaagatgaagaagaaatggaaggtggtggtggtagtggtgat 318
Query: 808 aatccattcgaagctttaagaaatcatccacacttcaacttacttcgtgaagccatctcc 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatccattcgaagctttaagaaatcatccacacttcaacttacttcgtgaagccatctcc 378
Query: 868 aaaaatccaagcattatcccaggaatcttacaacaattagctcaaaccaatccagccctc 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaaatccaagcattatcccaggaatcttacaacaattagctcaaaccaatccagccctc 438
Query: 928 gttagacaaatccaagaaaatccaaatgaatttattcgtctcttccaaggtgatggtaac 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gttagacaaatccaagaaaatccaaatgaatttattcgtctcttccaaggtgatggtaac 498
Query: 988 ccaggtggcaatccaggtcaatttactcttcaagtcactcaagaagaatctgaagcaatt 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccaggtggcaatccaggtcaatttactcttcaagtcactcaagaagaatctgaagcaatt 558
Query: 1048 caaagattacaagccttaacaggtatggataaatcaacagttattgaagcttattttgca 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caaagattacaagccttaacaggtatggataaatcaacagttattgaagcttattttgca 618
Query: 1108 tgtgacaagaatgaagaactcacagcttcttatctttttgaaactgctgacgatg 1162
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgtgacaagaatgaagaactcacagcttcttatctttttgaaactgctgacgatg 673
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,031,502,908
Number of extensions: 63727667
Number of successful extensions: 5803604
Number of sequences better than 10.0: 141
Length of query: 1203
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1179
Effective length of database: 97,308,875,965
Effective search space: 114727164762735
Effective search space used: 114727164762735
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.26 |
| Homology vs Protein |
Query= Contig-U09858-1 (Contig-U09858-1Q) /CSM_Contig/Contig-U09858-1Q.Seq.d
(1203 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54LV1) RecName: Full=UV excision repair protein RAD23 homolog;... 312 1e-83
AF103870_1(AF103870|pid:none) Dictyostelium discoideum repC-bind... 312 1e-83
BC079526_1(BC079526|pid:none) Danio rerio RAD23 homolog A (S. ce... 131 5e-29
AB463210_1(AB463210|pid:none) Synthetic construct DNA, clone: pF... 130 1e-28
BC088364_1(BC088364|pid:none) Homo sapiens RAD23 homolog A (S. c... 130 1e-28
AK289908_1(AK289908|pid:none) Homo sapiens cDNA FLJ78534 complet... 130 1e-28
(A3KMV2) RecName: Full=UV excision repair protein RAD23 homolog ... 130 1e-28
AM055942_212(AM055942|pid:none) Toxoplasma gondii RH, genomic DN... 129 2e-28
CR940347_352(CR940347|pid:none) Theileria annulata strain Ankara... 129 2e-28
BC152590_1(BC152590|pid:none) Danio rerio zgc:123349, mRNA (cDNA... 123 1e-26
AP004840_13(AP004840|pid:none) Oryza sativa Japonica Group genom... 119 2e-25
BC044089_1(BC044089|pid:none) Xenopus laevis RAD23 homolog B (S.... 118 4e-25
BC091020_1(BC091020|pid:none) Xenopus tropicalis rad23b protein,... 118 4e-25
BC003846_1(BC003846|pid:none) Mus musculus RAD23a homolog (S. ce... 118 5e-25
AK142280_1(AK142280|pid:none) Mus musculus 13 days embryo heart ... 117 1e-24
(O74803) RecName: Full=UV excision repair protein rhp23; AltName... 117 1e-24
(Q29RK4) RecName: Full=UV excision repair protein RAD23 homolog ... 117 1e-24
AB172343_1(AB172343|pid:none) Macaca fascicularis brain cDNA clo... 116 1e-24
AY891626_1(AY891626|pid:none) Synthetic construct Homo sapiens c... 116 1e-24
AK297986_1(AK297986|pid:none) Homo sapiens cDNA FLJ50817 complet... 116 1e-24
AY890842_1(AY890842|pid:none) Synthetic construct Homo sapiens c... 116 1e-24
AY889045_1(AY889045|pid:none) Synthetic construct Homo sapiens c... 116 1e-24
AY313777_1(AY313777|pid:none) Homo sapiens RAD23-like protein B ... 116 1e-24
FN357476_17(FN357476|pid:none) Schistosoma mansoni genome sequen... 116 2e-24
CR382130_656(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 116 2e-24
AY394976_1(AY394976|pid:none) Danio rerio clone RK061A2F08 RAD23... 116 2e-24
BC070960_1(BC070960|pid:none) Rattus norvegicus RAD23 homolog B ... 115 3e-24
DQ415920_46(DQ415920|pid:none) Cleome spinosa clone BAC Cs3, com... 115 3e-24
AJ243875_1(AJ243875|pid:none) Lycopersicon esculentum mRNA for R... 115 3e-24
DQ413221_1(DQ413221|pid:none) Acyrthosiphon pisum isolate WHAP02... 115 4e-24
(Q84L30) RecName: Full=Putative DNA repair protein RAD23-4; AltN... 114 5e-24
AK316189_1(AK316189|pid:none) Homo sapiens cDNA, FLJ79088 comple... 114 7e-24
DQ222505_1(DQ222505|pid:none) Solanum tuberosum clone 108E05 RAD... 114 9e-24
AK223479_1(AK223479|pid:none) Homo sapiens mRNA for UV excision ... 113 1e-23
DQ228332_1(DQ228332|pid:none) Solanum tuberosum clone 140H03 unk... 113 2e-23
BT087696_1(BT087696|pid:none) Zea mays full-length cDNA clone ZM... 109 2e-22
DQ683057_1(DQ683057|pid:none) Synthetic construct Rad23-3Ai (Rad... 109 2e-22
(Q84L32) RecName: Full=Putative DNA repair protein RAD23-2; AltN... 108 4e-22
AB109197_1(AB109197|pid:none) Arabidopsis thaliana AtRAD23-3beta... 108 4e-22
AB109195_1(AB109195|pid:none) Arabidopsis thaliana AtRAD23-2 mRN... 108 4e-22
BT045977_1(BT045977|pid:none) Salmo salar clone ssal-rgf-538-141... 107 6e-22
BT042567_1(BT042567|pid:none) Zea mays full-length cDNA clone ZM... 107 6e-22
AB109194_1(AB109194|pid:none) Arabidopsis thaliana AtRAD23-1beta... 107 1e-21
AB109193_1(AB109193|pid:none) Arabidopsis thaliana AtRAD23-1alph... 107 1e-21
BC068193_1(BC068193|pid:none) Mus musculus RAD23b homolog (S. ce... 107 1e-21
EF147005_1(EF147005|pid:none) Populus trichocarpa clone WS01226_... 106 2e-21
(Q40742) RecName: Full=Probable DNA repair protein RAD23; AltNam... 104 5e-21
T14336(T14336) RAD23 protein, isoform I - carrot &Y12013_1(Y120... 103 2e-20
AK064881_1(AK064881|pid:none) Oryza sativa Japonica Group cDNA c... 102 2e-20
CP000497_314(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 102 3e-20
AM920435_115(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 100 1e-19
BC084695_1(BC084695|pid:none) Rattus norvegicus RAD23 homolog A ... 96 2e-18
CP000590_190(CP000590|pid:none) Ostreococcus lucimarinus CCE9901... 94 1e-17
AK045224_1(AK045224|pid:none) Mus musculus 9.5 days embryo parth... 93 2e-17
EU960776_1(EU960776|pid:none) Zea mays clone 228503 DNA repair p... 91 6e-17
EU962226_1(EU962226|pid:none) Zea mays clone 241083 DNA repair p... 90 1e-16
AB109199_1(AB109199|pid:none) Arabidopsis thaliana AtRAD23-4beta... 90 2e-16
AF136606_1(AF136606|pid:none) Drosophila melanogaster DHR23 (DHR... 88 5e-16
AE014135_63(AE014135|pid:none) Drosophila melanogaster chromosom... 88 5e-16
AE014135_62(AE014135|pid:none) Drosophila melanogaster chromosom... 88 5e-16
BT050741_1(BT050741|pid:none) Medicago truncatula clone MTYF5_F6... 87 9e-16
AE014297_3600(AE014297|pid:none) Drosophila melanogaster chromos... 86 2e-15
AK293532_1(AK293532|pid:none) Homo sapiens cDNA FLJ56531 complet... 85 4e-15
AE014185_112(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 84 1e-14
FJ409562_1(FJ409562|pid:none) Sebastiscus marmoratus proliferati... 77 9e-13
AC006341_1(AC006341|pid:none) Arabidopsis thaliana chromosome 1 ... 77 9e-13
EU290670_1(EU290670|pid:none) Clonorchis sinensis clone CMXR-GP1... 75 5e-12
U82163_1(U82163|pid:none) Oryctolagus cuniculus oncogene rsc mRN... 73 2e-11
CR382125_963(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 72 3e-11
(P32628) RecName: Full=UV excision repair protein RAD23; &AY693... 72 3e-11
AM910990_113(AM910990|pid:none) Plasmodium knowlesi strain H chr... 72 3e-11
FM992689_168(FM992689|pid:none) Candida dubliniensis CD36 chromo... 60 1e-07
AY812063_1(AY812063|pid:none) Schistosoma japonicum SJCHGC06167 ... 60 2e-07
AM502248_373(AM502248|pid:none) Leishmania infantum chromosome 30. 60 2e-07
CU928178_212(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 58 6e-07
EU967882_1(EU967882|pid:none) Zea mays clone 306810 unknown mRNA. 56 3e-06
EU306599_1(EU306599|pid:none) Brassica napus RAD23-like protein ... 55 4e-06
AL844508_220(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 55 6e-06
AY942832_1(AY942832|pid:none) Adineta ricciae RAD23B-like protei... 54 8e-06
EU952121_1(EU952121|pid:none) Zea mays clone 1167287 hypothetica... 54 8e-06
EU306600_1(EU306600|pid:none) Brassica napus DNA repair protein ... 54 1e-05
AL137852_2(AL137852|pid:none) Human DNA sequence from clone RP11... 54 1e-05
BT058466_1(BT058466|pid:none) Salmo salar clone Contig1073 UV ex... 53 2e-05
AF063866_144(AF063866|pid:none) Melanoplus sanguinipes entomopox... 53 2e-05
BX510301_2(BX510301|pid:none) Zebrafish DNA sequence from clone ... 53 2e-05
AF250284_180(AF250284|pid:none) Amsacta moorei entomopoxvirus, c... 52 4e-05
FM992689_971(FM992689|pid:none) Candida dubliniensis CD36 chromo... 52 5e-05
BC135335_1(BC135335|pid:none) Xenopus tropicalis HLA-B associate... 51 7e-05
AM910989_193(AM910989|pid:none) Plasmodium knowlesi strain H chr... 51 7e-05
EF035042_123(EF035042|pid:none) Spodoptera frugiperda MNPV isola... 51 9e-05
AE017342_100(AE017342|pid:none) Cryptococcus neoformans var. neo... 50 1e-04
EU780426_128(EU780426|pid:none) Spodoptera litura nucleopolyhedr... 50 2e-04
AY573761_1(AY573761|pid:none) Drosophila simulans isolate Cook R... 50 2e-04
AF499596_49(AF499596|pid:none) Phthorimaea operculella granulovi... 49 3e-04
EU309041_58(EU309041|pid:none) Orgyia leucostigma NPV isolate CF... 49 3e-04
AF539999_151(AF539999|pid:none) Mamestra configurata nucleopolyh... 49 4e-04
AF528705_1(AF528705|pid:none) Arabidopsis thaliana ecotype Lisse... 49 5e-04
U43128_1(U43128|pid:none) Naegleria fowleri ubiquitin mRNA, part... 49 5e-04
AF469060_1(AF469060|pid:none) Heterodera glycines ubiquitin exte... 49 5e-04
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 48 6e-04
Z28649_1(Z28649|pid:none) Acetabularia cliftonii gene for polyub... 48 6e-04
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 48 6e-04
FJ527489_1(FJ527489|pid:none) Plutella xylostella isolate Ub1 ub... 48 6e-04
EU030444_4(EU030444|pid:none) Ornithorhynchus anatinus pseudoaut... 48 6e-04
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 48 6e-04
AY857455_1(AY857455|pid:none) Suberites domuncula L40-ubiquitin ... 48 6e-04
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 48 6e-04
(P42739) RecName: Full=Ubiquitin; 48 6e-04
AB045758_1(AB045758|pid:none) Physarum polycephalum ppub4 mRNA f... 48 8e-04
AY831445_1(AY831445|pid:none) Monocercomonoides sp. PA203 polyub... 48 8e-04
AJ243802_2(AJ243802|pid:none) Kluyveromyces lactis ORF YDR183W (... 48 8e-04
CQ918486_1(CQ918486|pid:none) Sequence 6 from Patent WO2004097011. 48 8e-04
AJ007936_1(AJ007936|pid:none) Gibberella pulicaris ubi1 gene. &... 48 8e-04
AE016816_144(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 48 8e-04
CR382132_415(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 48 8e-04
CU928169_242(CU928169|pid:none) Kluyveromyces thermotolerans str... 48 8e-04
AF056624_1(AF056624|pid:none) Magnaporthe grisea strain Guy-11 u... 48 8e-04
A29456(A29456;B29456;S48386;S38172) ubiquitin / ribosomal protei... 48 8e-04
AJ698912_1(AJ698912|pid:none) Fusarium fujikuroi partial mRNA fo... 48 8e-04
AC115584_9(AC115584|pid:none) Dictyostelium discoideum chromosom... 48 8e-04
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526... 48 8e-04
CR380950_216(CR380950|pid:none) Candida glabrata strain CBS138 c... 48 8e-04
CS362623_1(CS362623|pid:none) Sequence 3 from Patent WO2006073320. 48 8e-04
X01474_1(X01474|pid:none) Yeast gene fragment for polyubiquitin ... 48 8e-04
AB045756_1(AB045756|pid:none) Physarum polycephalum ppub2 mRNA f... 48 8e-04
M33018_1(M33018|pid:none) D.melanogaster ubiquitin gene, 5' end. 48 8e-04
CR382139_690(CR382139|pid:none) Debaryomyces hansenii strain CBS... 48 8e-04
AF056623_1(AF056623|pid:none) Magnaporthe grisea strain Guy-11 u... 48 8e-04
FN392322_794(FN392322|pid:none) Pichia pastoris GS115 chromosome... 48 8e-04
DQ011576_1(DQ011576|pid:none) Euphorbia characias polyubiquitin ... 48 8e-04
AF056625_1(AF056625|pid:none) Magnaporthe grisea strain Guy-11 p... 48 8e-04
CU928179_320(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 48 8e-04
DQ914562_1(DQ914562|pid:none) Porphyra yezoensis polyubiquitin (... 48 8e-04
DQ286557_1(DQ286557|pid:none) Helicoverpa assulta ubiquitin-53aa... 48 8e-04
AP007155_1027(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 48 8e-04
AY303168_2(AY303168|pid:none) Degron tagging vector pSMUG2+ beta... 48 8e-04
Y17558_1(Y17558|pid:none) Candida albicans UB14 gene. 48 8e-04
AJ243800_3(AJ243800|pid:none) Kluyveromyces lactis rim101 (parti... 48 8e-04
CU928179_267(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 48 8e-04
U17246_2(U17246|pid:none) Saccharomyces cerevisiae chromosome XI... 48 8e-04
AY571670_1(AY571670|pid:none) Gromia oviformis polyubiquitin gen... 48 8e-04
CS362629_1(CS362629|pid:none) Sequence 9 from Patent WO2006073320. 48 8e-04
DQ837165_21(DQ837165|pid:none) Ecotropis obliqua NPV strain A1, ... 48 8e-04
(P42740) RecName: Full=Ubiquitin; 48 8e-04
CU928175_164(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 48 8e-04
U32627_1(U32627|pid:none) Candida albicans ubiquitin precursor (... 48 8e-04
CQ918481_1(CQ918481|pid:none) Sequence 1 from Patent WO2004097011. 48 8e-04
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 48 8e-04
AB045757_1(AB045757|pid:none) Physarum polycephalum ppub3 mRNA f... 48 8e-04
AF517849_1(AF517849|pid:none) Griffithsia japonica isolate Gj532... 48 8e-04
UQBY(D29456;S64790;B22696;A22696) polyubiquitin 5 - yeast (Sacch... 48 8e-04
FM992690_680(FM992690|pid:none) Candida dubliniensis CD36 chromo... 48 8e-04
M31426_1(M31426|pid:none) Synthetic yeast (S.cerevisiae) ubiquit... 48 8e-04
DQ914563_1(DQ914563|pid:none) Porphyra yezoensis polyubiquitin (... 48 8e-04
CR382131_778(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 48 8e-04
AE017341_332(AE017341|pid:none) Cryptococcus neoformans var. neo... 48 8e-04
CR380953_349(CR380953|pid:none) Candida glabrata strain CBS138 c... 48 8e-04
S34285(S34285) polyubiquitin - tomato &X73156_1(X73156|pid:none) 48 8e-04
AL031854_8(AL031854|pid:none) S.pombe chromosome II cosmid c337.... 48 8e-04
AB045755_1(AB045755|pid:none) Physarum polycephalum ppub1 mRNA f... 48 8e-04
DQ019224_1(DQ019224|pid:none) Gracilaria lemaneiformis ubiquitin... 47 0.001
BT046483_1(BT046483|pid:none) Salmo salar clone ssal-evd-569-157... 47 0.001
AY286305_1(AY286305|pid:none) Heterodera schachtii ubiquitin ext... 47 0.001
(Q55DZ5) RecName: Full=Ubiquitin; 47 0.001
AK291539_1(AK291539|pid:none) Homo sapiens cDNA FLJ75516 complet... 47 0.001
M30305_1(M30305|pid:none) A.californica nuclear polyhedrosis vir... 47 0.001
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos... 47 0.001
(P13117) RecName: Full=Ubiquitin; 47 0.001
(P49634) RecName: Full=Ubiquitin; 47 0.001
M23749_1(M23749|pid:none) D.discoideum ubiquitin mRNA, complete ... 47 0.001
DQ216250_1(DQ216250|pid:none) Taeniopygia guttata clone 0058P002... 47 0.001
U53466_54(U53466|pid:none) Cydia pomonella granulovirus, complet... 47 0.001
AF175521_1(AF175521|pid:none) Emericella nidulans UBI1 (ubi1) mR... 47 0.001
X87156_1(X87156|pid:none) Acanthamoeba sp. 4b3 polyubiquitin gene. 47 0.001
EF144403_1(EF144403|pid:none) Populus trichocarpa clone PX0019_E... 47 0.001
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019... 47 0.001
X98063_1(X98063|pid:none) P.sylvestris mRNA for polyubiquitin. 47 0.001
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 47 0.001
UQNC(S05323) polyubiquitin 4 - Neurospora crassa &X13140_1(X131... 47 0.001
AY864330_26(AY864330|pid:none) Chrysodeixis chalcites nucleopoly... 47 0.001
AJ575140_1(AJ575140|pid:none) Sordaria macrospora partial smu599... 47 0.001
U45317_1(U45317|pid:none) Litomosoides sigmodontis ubiquitin c-t... 47 0.001
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 47 0.001
AJ277169_1(AJ277169|pid:none) Galdieria sulphuraria mRNA for ubi... 47 0.001
S55245(S55245)polyubiquitin 5 - Arabidopsis thaliana 47 0.001
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 47 0.001
X92422_1(X92422|pid:none) Z.mays mRNA for ubiquitin/ribosomal pr... 47 0.001
L31492_1(L31492|pid:none) Caenorhabditis elegans ubiquitin/ribos... 47 0.001
AM087935_1(AM087935|pid:none) Chorocaris chacei mitochondrial pa... 47 0.001
Y17004_1(Y17004|pid:none) Suberites domuncula mRNA for monoubiqu... 47 0.001
FN323957_1(FN323957|pid:none) Schistosoma japonicum isolate Anhu... 47 0.001
BT078470_1(BT078470|pid:none) Lepeophtheirus salmonis clone lsal... 47 0.001
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 47 0.001
FJ227128_48(FJ227128|pid:none) Euproctis pseudoconspersa nucleop... 47 0.001
AP008209_971(AP008209|pid:none) Oryza sativa (japonica cultivar-... 47 0.001
AY375335_1(AY375335|pid:none) Gossypium barbadense fiber polyubi... 47 0.001
EU139240_1(EU139240|pid:none) Flustra foliacea ubiquinated putat... 47 0.001
DQ115333_1(DQ115333|pid:none) Caenorhabditis remanei ubiquitin p... 47 0.001
AF285161_1(AF285161|pid:none) Mus musculus cell-line C3H/He poly... 47 0.001
DQ413222_1(DQ413222|pid:none) Acyrthosiphon pisum isolate WHAP02... 47 0.001
AY303811_1(AY303811|pid:none) Carassius auratus ubquitin-like pr... 47 0.001
DQ104334_1(DQ104334|pid:none) Morus mongolica ubiquitin monomer ... 47 0.001
S43306(S43306)polyubiquitin 6 - Geodia cydonium 47 0.001
EU139195_1(EU139195|pid:none) Flustra foliacea ubiquinated putat... 47 0.001
AB021972_1(AB021972|pid:none) Bombyx mori UBI1 mRNA for ubiquiti... 47 0.001
AY961529_1(AY961529|pid:none) Lysiphlebus testaceipes ribosomal ... 47 0.001
AY771321_1(AY771321|pid:none) Scleronephthya gracillimum ubuiqui... 47 0.001
EU302560_1(EU302560|pid:none) Lineus viridis ribosomal protein r... 47 0.001
AF088848_1(AF088848|pid:none) Capsicum chinense polyubiquitin (U... 47 0.001
(P14792) RecName: Full=Ubiquitin; &(P59669) RecName: Fu &EF1015... 47 0.001
AY961507_1(AY961507|pid:none) Lysiphlebus testaceipes ribosomal ... 47 0.001
AY485340_1(AY485340|pid:none) Schistosoma mansoni ubiquitin mRNA... 47 0.001
Y12082_1(Y12082|pid:none) Suberites domuncula mRNA for polyubiqu... 47 0.001
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 47 0.001
AF400203_1(AF400203|pid:none) Spodoptera frugiperda ribosomal pr... 47 0.001
BT076736_1(BT076736|pid:none) Caligus rogercresseyi clone crog-e... 47 0.001
BT076264_1(BT076264|pid:none) Caligus rogercresseyi clone crog-e... 47 0.001
BT071477_1(BT071477|pid:none) Picea sitchensis clone WS02916_A12... 47 0.001
S40611(S40611;S34707) polyubiquitin 5 - Volvox carteri &X74214_... 47 0.002
M22214_1(M22214|pid:none) Synthetic human ubiquitin gene (Phe4- ... 47 0.002
(P19848) RecName: Full=Ubiquitin; &AB210844_1(AB210844|pid:none... 47 0.002
AJ416499_1(AJ416499|pid:none) Pleurotus ostreatus partial mRNA f... 47 0.002
DQ363465_1(DQ363465|pid:none) Ictalurus punctatus clone C153BB02... 47 0.002
EU586197_1(EU586197|pid:none) Malus x domestica cultivar Fuji po... 47 0.002
AM117573_1(AM117573|pid:none) Paralvinella grasslei partial gene... 47 0.002
X07451_1(X07451|pid:none) Trypanosoma cruzi ubiquitin gene. &X0... 47 0.002
FN316697_1(FN316697|pid:none) Schistosoma japonicum isolate Anhu... 47 0.002
A63899_1(A63899|pid:none) Sequence 24 from Patent WO9723633. &C... 47 0.002
AF060232_1(AF060232|pid:none) Botryotinia fuckeliana monoubiquit... 47 0.002
UQUTC(S00510) ubiquitin precursor - Trypanosoma cruzi (fragment)... 47 0.002
AF060501_1(AF060501|pid:none) Botryotinia fuckeliana polyubiquit... 47 0.002
AE016819_518(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 47 0.002
EF676128_1(EF676128|pid:none) Picea sitchensis clone WS02711_O04... 47 0.002
AE016820_243(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 47 0.002
AM087928_1(AM087928|pid:none) Nereis diversicolor mitochondrial ... 47 0.002
AF031628_1(AF031628|pid:none) Schizophyllum commune polyubiquiti... 47 0.002
DQ413200_1(DQ413200|pid:none) Acyrthosiphon pisum isolate WHAP00... 47 0.002
UQKM(S06598;S19543;S21687) ubiquitin / ribosomal protein CEP52 -... 47 0.002
AY318871_96(AY318871|pid:none) Canarypox virus strain ATCC VR-11... 47 0.002
M22217_1(M22217|pid:none) Synthetic human ubiquitin gene (Phe4- ... 47 0.002
AF098511_1(AF098511|pid:none) Xenopus laevis Scythe mRNA, comple... 47 0.002
S62680(S62680)ubiquitin/ribosomal protein S27a fusion protein - ... 47 0.002
AE017351_259(AE017351|pid:none) Cryptococcus neoformans var. neo... 47 0.002
U29158_1(U29158|pid:none) Zea mays polyubiquitin (MubC5) mRNA, c... 47 0.002
FN315480_1(FN315480|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
AF061807_1(AF061807|pid:none) Elaeagnus umbellata polyubiquitin ... 46 0.002
EF146368_1(EF146368|pid:none) Populus trichocarpa clone WS0117_J... 46 0.002
AJ309010_1(AJ309010|pid:none) Nicotiana tabacum mRNA for polyubi... 46 0.002
FN316690_1(FN316690|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
FJ438516_1(FJ438516|pid:none) Epinephelus coioides ubiquitin C v... 46 0.002
BC168051_1(BC168051|pid:none) Xenopus tropicalis cDNA clone MGC:... 46 0.002
UQSY(S02222)ubiquitin precursor - soybean (fragment) 46 0.002
EU348739_1(EU348739|pid:none) Adonis aestivalis var. palaestina ... 46 0.002
AK010964_1(AK010964|pid:none) Mus musculus 13 days embryo liver ... 46 0.002
AF093505_1(AF093505|pid:none) Saccharum hybrid cultivar H32-8560... 46 0.002
M74156_1(M74156|pid:none) Nicotiana sylvestris (clone 6PU4) pent... 46 0.002
UQFS(S03599)ubiquitin precursor - common sunflower (fragment) 46 0.002
S11248(S11248)ubiquitin / ribosomal protein CEP52 - mouse (fragm... 46 0.002
DQ336883_1(DQ336883|pid:none) Zinnia elegans putative pentameric... 46 0.002
BC049473_1(BC049473|pid:none) Danio rerio zgc:172187, mRNA (cDNA... 46 0.002
BC127395_1(BC127395|pid:none) Danio rerio zgc:153686, mRNA (cDNA... 46 0.002
L22576_1(L22576|pid:none) Solanum tuberosum ubiquitin/ribosomal ... 46 0.002
EF120638_1(EF120638|pid:none) Hevea brasiliensis ubiquitin exten... 46 0.002
S12161(S12161)polyubiquitin - large-leaved lupine (fragment) 46 0.002
EU953492_1(EU953492|pid:none) Zea mays clone 1424191 unknown mRNA. 46 0.002
EU284858_1(EU284858|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 46 0.002
AF395864_1(AF395864|pid:none) Branchiostoma belcheri ubiquitin m... 46 0.002
AJ965275_1(AJ965275|pid:none) Polyplastron multivesiculatum part... 46 0.002
BT051676_1(BT051676|pid:none) Medicago truncatula clone MTYF5_F6... 46 0.002
AY752852_1(AY752852|pid:none) Culicoides sonorensis clone CsUB1 ... 46 0.002
AB003730_1(AB003730|pid:none) Homo sapiens gene for polyubiquiti... 46 0.002
AB170649_1(AB170649|pid:none) Macaca fascicularis brain cDNA clo... 46 0.002
AF506022_1(AF506022|pid:none) Tribolium castaneum isolate pCPUb ... 46 0.002
FN315482_1(FN315482|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
AM466823_1(AM466823|pid:none) Vitis vinifera contig VV78X042351.... 46 0.002
AL161503_16(AL161503|pid:none) Arabidopsis thaliana DNA chromoso... 46 0.002
DQ320121_3(DQ320121|pid:none) Binary vector pBINPLUS/ARS, comple... 46 0.002
BC045004_1(BC045004|pid:none) Xenopus laevis similar to ubiquiti... 46 0.002
EF145452_1(EF145452|pid:none) Populus trichocarpa clone WS01124_... 46 0.002
AM910993_48(AM910993|pid:none) Plasmodium knowlesi strain H chro... 46 0.002
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu... 46 0.002
FN315486_1(FN315486|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
AF298826_1(AF298826|pid:none) Prunus avium ubiquitin/ribosomal p... 46 0.002
CP000592_120(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 46 0.002
JH0226(JH0226) ubiquitin / ribosomal protein S27a.1 - barley &M... 46 0.002
AB036060_1(AB036060|pid:none) Oncorhynchus mykiss mRNA for ubiqu... 46 0.002
AB033601_1(AB033601|pid:none) Cucumis melo mRNA for polyubiquiti... 46 0.002
AK300882_1(AK300882|pid:none) Homo sapiens cDNA FLJ51326 complet... 46 0.002
AF322415_1(AF322415|pid:none) Synthetic construct HPV type 6b hu... 46 0.002
BC006680_1(BC006680|pid:none) Mus musculus ubiquitin C, mRNA (cD... 46 0.002
FN316698_1(FN316698|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
FN316688_1(FN316688|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
AP003725_1(AP003725|pid:none) Oryza sativa Japonica Group genomi... 46 0.002
AJ965273_1(AJ965273|pid:none) Polyplastron multivesiculatum part... 46 0.002
EU328536_1(EU328536|pid:none) Lolium temulentum ubiquitin (UBQ) ... 46 0.002
AF104020_1(AF104020|pid:none) Bovine viral diarrhea virus-2 subg... 46 0.002
BT057945_1(BT057945|pid:none) Salmo salar clone ssal-rgf-504-035... 46 0.002
AB005240_15(AB005240|pid:none) Arabidopsis thaliana genomic DNA,... 46 0.002
(P0C033) RecName: Full=Ubiquitin-like protein 1; 46 0.002
JQ1728(JQ1728)ubiquitin precursor - Arabidopsis thaliana (fragme... 46 0.002
EU436761_1(EU436761|pid:none) Sandersonia aurantiaca clone SAND7... 46 0.002
EU007433_1(EU007433|pid:none) Catharanthus roseus ubiquitin (UBQ... 46 0.002
EU586198_1(EU586198|pid:none) Malus x domestica cultivar Fuji po... 46 0.002
AM426496_4(AM426496|pid:none) Vitis vinifera contig VV78X245184.... 46 0.002
BT058181_1(BT058181|pid:none) Salmo salar clone Contig1385 Ubiqu... 46 0.002
AY819759_1(AY819759|pid:none) Homo sapiens ubiquitin C splice va... 46 0.002
BC021837_1(BC021837|pid:none) Mus musculus ubiquitin C, mRNA (cD... 46 0.002
AY086062_1(AY086062|pid:none) Arabidopsis thaliana clone 20908 m... 46 0.002
EU959003_1(EU959003|pid:none) Zea mays clone 208868 40S ribosoma... 46 0.002
FN315483_1(FN315483|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
DQ118117_1(DQ118117|pid:none) Lupinus albus polyubiquitin mRNA, ... 46 0.002
AY372537_1(AY372537|pid:none) Cucumis sativus ubiquitin extensio... 46 0.002
AB032025_1(AB032025|pid:none) Canis lupus familiaris mRNA for ub... 46 0.002
BT052956_1(BT052956|pid:none) Medicago truncatula clone MTYFL_FM... 46 0.002
AY099133_1(AY099133|pid:none) Cercomonas edax isolate pub5 polyu... 46 0.002
BT051458_1(BT051458|pid:none) Medicago truncatula clone MTYF1_F2... 46 0.002
U29160_1(U29160|pid:none) Zea mays clone MubG10 ubiquitin fusion... 46 0.002
AF321441_1(AF321441|pid:none) Galleria mellonella polyubiquitin ... 46 0.002
AC152972_3(AC152972|pid:none) Oryza sativa (japonica cultivar-gr... 46 0.002
BT035083_1(BT035083|pid:none) Zea mays full-length cDNA clone ZM... 46 0.002
AB122067_1(AB122067|pid:none) Crassostrea gigas mRNA for polyubi... 46 0.002
AE014134_1952(AE014134|pid:none) Drosophila melanogaster chromos... 46 0.002
AF502575_1(AF502575|pid:none) Musa acuminata ubiquitin (UBQ1) ge... 46 0.002
BT043890_1(BT043890|pid:none) Salmo salar clone HM4_3735 ribosom... 46 0.002
AF162221_52(AF162221|pid:none) Xestia c-nigrum granulovirus geno... 46 0.002
EF676259_1(EF676259|pid:none) Picea sitchensis clone WS02724_L09... 46 0.002
AK003190_1(AK003190|pid:none) Mus musculus 18-day embryo whole b... 46 0.002
D63791_1(D63791|pid:none) Homo sapiens UbC gene for polyubiquiti... 46 0.002
AY813866_1(AY813866|pid:none) Schistosoma japonicum clone SJCHGC... 46 0.002
AB098891_1(AB098891|pid:none) Bos taurus mRNA for similar to ubi... 46 0.002
AL117514_1(AL117514|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0... 46 0.002
DQ353761_1(DQ353761|pid:none) Ictalurus punctatus isolate C16JH0... 46 0.002
U84969_1(U84969|pid:none) Arabidopsis thaliana ubiquitin (UBQ11)... 46 0.002
S42643(S42643)ubiquitin / ribosomal protein S27a - potato (fragm... 46 0.002
EU558350_1(EU558350|pid:none) Phoronis muelleri putative ubiquit... 46 0.002
M22216_1(M22216|pid:none) Synthetic human ubiquitin gene (Phe4- ... 46 0.002
BT058174_1(BT058174|pid:none) Salmo salar clone Contig1232 Ubiqu... 46 0.002
BC114001_1(BC114001|pid:none) Bos taurus polyubiquitin, mRNA (cD... 46 0.002
BC019850_1(BC019850|pid:none) Mus musculus ubiquitin B, mRNA (cD... 46 0.002
CR954212_116(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 46 0.002
AJ965270_1(AJ965270|pid:none) Polyplastron multivesiculatum part... 46 0.002
BC093445_1(BC093445|pid:none) Homo sapiens ubiquitin C, mRNA (cD... 46 0.002
EU081898_1(EU081898|pid:none) Triticum aestivum polyubiquitin (W... 46 0.002
AK007273_1(AK007273|pid:none) Mus musculus adult male testis cDN... 46 0.002
FN316689_1(FN316689|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
UQFFM(A02575)ubiquitin - Mediterranean fruit fly 46 0.002
EU952584_1(EU952584|pid:none) Zea mays clone 1283821 40S ribosom... 46 0.002
AP008211_348(AP008211|pid:none) Oryza sativa (japonica cultivar-... 46 0.002
AF502576_1(AF502576|pid:none) Musa acuminata ubiquitin (UBQ2) ge... 46 0.002
DQ216251_1(DQ216251|pid:none) Taeniopygia guttata clone 0063P002... 46 0.002
BT079002_1(BT079002|pid:none) Esox lucius clone eluc-evq-516-246... 46 0.002
AY042884_1(AY042884|pid:none) Arabidopsis thaliana Unknown prote... 46 0.002
AF528678_1(AF528678|pid:none) Arabidopsis lyrata putative polyub... 46 0.002
BC049478_1(BC049478|pid:none) Danio rerio zgc:66168, mRNA (cDNA ... 46 0.002
AF035383_1(AF035383|pid:none) Arabidopsis thaliana polyubiquitin... 46 0.002
EU255577_47(EU255577|pid:none) Helicoverpa armigera granulovirus... 46 0.002
AB009010_1(AB009010|pid:none) Homo sapiens UbC1 mRNA for polyubi... 46 0.002
AY072292_1(AY072292|pid:none) Spodoptera frugiperda ribosomal pr... 46 0.002
S11296(S11296)polyubiquitin (clone arf3) - mouse (fragment) 46 0.002
DQ887067_1(DQ887067|pid:none) Arachis hypogaea polyubiquitin 10 ... 46 0.002
AK018706_1(AK018706|pid:none) Mus musculus adult male kidney cDN... 46 0.002
AF348700_1(AF348700|pid:none) Homo sapiens ubiquitin A-52 residu... 46 0.002
AL662988_4(AL662988|pid:none) Oryza sativa genomic DNA, chromoso... 46 0.002
BT074005_1(BT074005|pid:none) Oncorhynchus mykiss clone omyk-evo... 46 0.002
EF147813_1(EF147813|pid:none) Populus trichocarpa clone WS0125_D... 46 0.002
DQ673439_1(DQ673439|pid:none) Diaphorina citri putative ubiquiti... 46 0.002
BT061197_1(BT061197|pid:none) Zea mays full-length cDNA clone ZM... 46 0.002
AC141106_28(AC141106|pid:none) Medicago truncatula clone mth2-33... 46 0.002
T12035(T12035) polyubiquitin 4.4 - kidney bean &U77939_1(U77939... 46 0.002
AY394942_1(AY394942|pid:none) Danio rerio clone RK046A2G11 ubiqu... 46 0.002
BC167447_1(BC167447|pid:none) Danio rerio zgc:172187, mRNA (cDNA... 46 0.002
D63782_1(D63782|pid:none) Cricetulus sp. gene for polyubiquitin,... 46 0.002
AK013873_1(AK013873|pid:none) Mus musculus 12 days embryo head c... 46 0.002
DQ216246_1(DQ216246|pid:none) Taeniopygia guttata clone 0058P001... 46 0.002
AF104026_1(AF104026|pid:none) Bovine viral diarrhea virus-2 subg... 46 0.002
EF473650_1(EF473650|pid:none) Sus scrofa ubiquitin B (UBB) gene,... 46 0.002
EU952265_1(EU952265|pid:none) Zea mays clone 1273639 unknown mRNA. 46 0.002
AK168448_1(AK168448|pid:none) Mus musculus 17 days embryo kidney... 46 0.002
AY954394_1(AY954394|pid:none) Oryza sativa (japonica cultivar-gr... 46 0.002
AL953908_5(AL953908|pid:none) Zebrafish DNA sequence from clone ... 46 0.002
AF323508_1(AF323508|pid:none) Synthetic construct HPV type 6b hu... 46 0.002
AB291582_1(AB291582|pid:none) Solea senegalensis rpS27a mRNA for... 46 0.002
AB099083_1(AB099083|pid:none) Bos taurus mRNA for similar to pol... 46 0.002
BT073985_1(BT073985|pid:none) Oncorhynchus mykiss clone omyk-evo... 46 0.002
DQ267236_1(DQ267236|pid:none) Tragopogon dubius clone TDUBUBQ pu... 46 0.002
BC054976_1(BC054976|pid:none) Xenopus laevis ubiquitin C, mRNA (... 46 0.002
M22218_1(M22218|pid:none) Synthetic human ubiquitin gene (Thr66-... 46 0.002
AF429429_1(AF429429|pid:none) Olea europaea polyubiquitin OUB1 m... 46 0.002
DQ216234_1(DQ216234|pid:none) Taeniopygia guttata clone 0058P001... 46 0.002
DQ793132_1(DQ793132|pid:none) Arabidopsis thaliana ubiquitin (UB... 46 0.002
AP005393_13(AP005393|pid:none) Oryza sativa Japonica Group genom... 46 0.002
DQ445503_1(DQ445503|pid:none) Graphocephala atropunctata isolate... 46 0.002
AY785814_1(AY785814|pid:none) Oryza sativa (indica cultivar-grou... 46 0.002
AY732488_1(AY732488|pid:none) Homo sapiens ubiquitin C splice va... 46 0.002
AJ965272_1(AJ965272|pid:none) Polyplastron multivesiculatum part... 46 0.002
S40239(S40239) ubiquitin/ribosomal protein S27a fusion protein -... 46 0.002
I45964(I45964) polyubiquitin - bovine (fragment) &M62428_1(M624... 46 0.002
EU586196_1(EU586196|pid:none) Malus x domestica cultivar Fuji po... 46 0.002
BC157791_1(BC157791|pid:none) Xenopus tropicalis hypothetical pr... 46 0.002
CP001327_692(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 46 0.002
(P0C274) RecName: Full=Ubiquitin; &(P62972) RecName: Fu &(P6297... 46 0.002
FN323949_1(FN323949|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
BT058428_1(BT058428|pid:none) Salmo salar clone Contig656 Ubiqui... 46 0.002
FN323948_1(FN323948|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
CR940347_507(CR940347|pid:none) Theileria annulata strain Ankara... 46 0.002
DQ200392_1(DQ200392|pid:none) Solanum tuberosum clone 068E12 ubi... 46 0.002
AF104023_1(AF104023|pid:none) Bovine viral diarrhea virus-2 subg... 46 0.002
U26831_1(U26831|pid:none) Solanum tuberosum polyubiquitin gene, ... 46 0.002
FN320998_1(FN320998|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
DQ216239_1(DQ216239|pid:none) Taeniopygia guttata clone 0058P004... 46 0.002
L13783_1(L13783|pid:none) Bovine viral diarrhea virus p125 prote... 46 0.002
BT075650_1(BT075650|pid:none) Osmerus mordax clone omor-rgc-508-... 46 0.002
AF104024_1(AF104024|pid:none) Bovine viral diarrhea virus-2 subg... 46 0.002
AM269955_93(AM269955|pid:none) Aspergillus niger contig An01c008... 46 0.002
(O46543) RecName: Full=Ubiquitin; 46 0.002
AF045474_1(AF045474|pid:none) Schistosoma mansoni polyubiquitin ... 46 0.002
X94621_1(X94621|pid:none) C.alpestris ubiquitin gene. 46 0.002
AM040011_1(AM040011|pid:none) Agriotes lineatus mRNA for ubiquit... 46 0.002
AY254344_1(AY254344|pid:none) Schistosoma japonicum polyubiquiti... 46 0.002
X08013_1(X08013|pid:none) Chinese hamster mRNA for ubiquitin. 46 0.002
M17597_1(M17597|pid:none) Human poly-ubiquitin mRNA, complete cds. 46 0.002
BC080583_1(BC080583|pid:none) Homo sapiens cDNA clone IMAGE:2822... 46 0.002
AJ437537_1(AJ437537|pid:none) Oryza sativa partial mRNA for poly... 46 0.002
BT083357_1(BT083357|pid:none) Anoplopoma fimbria clone afim-evh-... 46 0.002
BT049653_1(BT049653|pid:none) Salmo salar clone ssal-evd-544-065... 46 0.002
D83208_1(D83208|pid:none) Cavia cobaya mRNA for ubiquitin, compl... 46 0.002
AF104021_1(AF104021|pid:none) Bovine viral diarrhea virus-2 subg... 46 0.002
AJ965274_1(AJ965274|pid:none) Polyplastron multivesiculatum part... 46 0.002
BT000701_1(BT000701|pid:none) Arabidopsis thaliana clone RAFL08-... 46 0.002
CP001333_164(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 46 0.002
AY478418_1(AY478418|pid:none) Clusia minor polyubiquitin (Ubq1) ... 46 0.002
AB047855_1(AB047855|pid:none) Oryza sativa Ub-CEP52-1 gene for u... 46 0.002
EU247124_1(EU247124|pid:none) Lycosa singoriensis 60S ribosomal ... 46 0.002
A62334_1(A62334|pid:none) Sequence 22 from Patent WO9712992. &A... 46 0.002
DQ420617_1(DQ420617|pid:none) Anser anser ubiquitin C II mRNA, c... 46 0.002
AF528710_1(AF528710|pid:none) Arabidopsis thaliana ecotype Ita-0... 46 0.002
AE014134_744(AE014134|pid:none) Drosophila melanogaster chromoso... 46 0.002
AB098769_1(AB098769|pid:none) Bos taurus mRNA for similar to pol... 46 0.002
AJ844617_1(AJ844617|pid:none) Plantago major mRNA for polyubiqui... 46 0.002
DQ445914_1(DQ445914|pid:none) Gladiolus grandiflorus polyubiquit... 46 0.002
FN323968_1(FN323968|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
BT048991_1(BT048991|pid:none) Salmo salar clone ssal-evf-534-259... 46 0.002
AF361365_1(AF361365|pid:none) Oncorhynchus mykiss polyubiquitin ... 46 0.002
X02650_1(X02650|pid:none) Chicken mRNA for ubiquitin. 46 0.002
DQ975458_1(DQ975458|pid:none) Capsicum annuum ubiquitin extensio... 46 0.002
AJ388512_1(AJ388512|pid:none) Canis familiaris mRNA for ubiquiti... 46 0.002
BT051346_1(BT051346|pid:none) Medicago truncatula clone MTYF1_F2... 46 0.002
M62429_1(M62429|pid:none) Bovine polyubiquitin mRNA, 3' end, clo... 46 0.002
S17436(S17436) ubiquitin precursor UbB2 - common sunflower (frag... 46 0.002
U61404_1(U61404|pid:none) Manduca sexta polyubiquitin gene, 5' r... 46 0.002
AY752793_1(AY752793|pid:none) Culicoides sonorensis clone CsARU ... 46 0.002
AM087934_1(AM087934|pid:none) Chorocaris chacei mitochondrial pa... 46 0.002
BT051253_1(BT051253|pid:none) Medicago truncatula clone MTYF1_F2... 46 0.002
BT073019_1(BT073019|pid:none) Oncorhynchus mykiss clone omyk-evn... 46 0.002
D17296_1(D17296|pid:none) Rattus norvegicus mRNA for polyubiquit... 46 0.002
AJ937553_1(AJ937553|pid:none) Collozoum inerme partial pub gene,... 46 0.002
AM049143_1(AM049143|pid:none) Dascillus cervinus mRNA for riboso... 46 0.002
AB111967_1(AB111967|pid:none) Bovine viral diarrhea virus T-20 g... 46 0.002
EF144484_1(EF144484|pid:none) Populus trichocarpa clone PX0019_L... 46 0.002
AB090878_1(AB090878|pid:none) Aster tripolium mRNA for polyubiqu... 46 0.002
AF184279_1(AF184279|pid:none) Oryza sativa polyubiquitin (RUBQ1)... 46 0.002
AF436850_1(AF436850|pid:none) Cucumis melo polyubiquitin mRNA, p... 46 0.002
AY117055_1(AY117055|pid:none) Gossypium herbaceum putative polyu... 46 0.002
BT043771_1(BT043771|pid:none) Salmo salar clone HM6_1209 ubiquit... 46 0.002
M11691_1(M11691|pid:none) Synthetic beta-galactosidase/mouse ubi... 46 0.002
FN316696_1(FN316696|pid:none) Schistosoma japonicum isolate Anhu... 46 0.002
AP008212_1813(AP008212|pid:none) Oryza sativa (japonica cultivar... 46 0.002
AY098526_1(AY098526|pid:none) Ananas comosus tetrameric ubiquiti... 46 0.002
AM441378_1(AM441378|pid:none) Vitis vinifera contig VV78X123789.... 46 0.002
AB089615_1(AB089615|pid:none) Gorilla gorilla UbC gene for polyu... 46 0.002
AB099044_1(AB099044|pid:none) Bos taurus mRNA for similar to pol... 46 0.002
L81141_1(L81141|pid:none) Pisum sativum (Alaska) ubiquitin (PUB3... 46 0.002
CP001325_12(CP001325|pid:none) Micromonas sp. RCC299 chromosome ... 46 0.002
BC053371_1(BC053371|pid:none) Homo sapiens ribosomal protein S27... 46 0.002
M24507_1(M24507|pid:none) Synthetic human ubiquitin (UBCEP80) ge... 46 0.002
X74405_5(X74405|pid:none) Artemia franciscana gene for polyubiqu... 46 0.002
AY748811_1(AY748811|pid:none) Thaumatomonas sp. DDM-2005 polyubi... 46 0.002
AF104025_1(AF104025|pid:none) Bovine viral diarrhea virus-2 subg... 46 0.002
CQ904363_1(CQ904363|pid:none) Sequence 1 from Patent WO2004085466. 46 0.002
A29584(A29584) ubiquitin precursor - pig (fragment) &M18159_1(M... 46 0.002
AY275680_1(AY275680|pid:none) Hevea brasiliensis ubiquitin mRNA,... 46 0.002
BT058528_1(BT058528|pid:none) Salmo salar clone Contig1643 Ubiqu... 46 0.002
FN357410_7(FN357410|pid:none) Schistosoma mansoni genome sequenc... 46 0.002
DQ216243_1(DQ216243|pid:none) Taeniopygia guttata clone 0058P001... 46 0.002
AC005292_28(AC005292|pid:none) Genomic sequence for Arabidopsis ... 46 0.002
L19056_1(L19056|pid:none) Artemia franciscana ubiquitin mRNA, pa... 46 0.002
EU306853_1(EU306853|pid:none) Drosophila silvestris clone sv3E-T... 46 0.002
UQWO7A(S13136) ubiquitin / ribosomal protein S27a - tobacco horn... 46 0.002
DQ216252_1(DQ216252|pid:none) Taeniopygia guttata clone 0058P000... 46 0.002
EF633956_1(EF633956|pid:none) Ornithodoros parkeri clone OP-73 u... 46 0.002
EU967930_1(EU967930|pid:none) Zea mays clone 311453 40S ribosoma... 46 0.002
AK056939_1(AK056939|pid:none) Homo sapiens cDNA FLJ32377 fis, cl... 46 0.002
AY297059_1(AY297059|pid:none) Triticum aestivum ubiquitin (WUB1)... 46 0.002
EU972519_1(EU972519|pid:none) Zea mays clone 382655 unknown mRNA. 46 0.002
AC149642_19(AC149642|pid:none) Medicago truncatula chromosome 2 ... 46 0.002
DQ793134_1(DQ793134|pid:none) Arabidopsis thaliana ubiquitin (UB... 46 0.002
DQ839403_1(DQ839403|pid:none) Morus bombycis ubiquitin extension... 46 0.002
DQ673413_1(DQ673413|pid:none) Diaphorina citri putative ubiquiti... 46 0.002
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub... 46 0.002
BT052981_1(BT052981|pid:none) Medicago truncatula clone MTYFL_FM... 46 0.002
>(Q54LV1) RecName: Full=UV excision repair protein RAD23 homolog;
AltName: Full=repC-binding protein A;
Length = 342
Score = 312 bits (800), Expect = 1e-83
Identities = 164/191 (85%), Positives = 164/191 (85%)
Frame = +1
Query: 592 QQSSDFATGTELEATIKNITDMGFARDQVLRALRLTFNNAERAIEYLVSGNIPAANDPXX 771
QQSSDFATGTELEATIKNITDMGFARDQVLRALRLTFNNAERAIEYLVSGNIPAANDP
Sbjct: 152 QQSSDFATGTELEATIKNITDMGFARDQVLRALRLTFNNAERAIEYLVSGNIPAANDPED 211
Query: 772 XXXXXXXXXXXDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENP 951
DNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENP
Sbjct: 212 EEEMEGGGGSGDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENP 271
Query: 952 NEFIRLXXXXXXXXXXXXXXTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELT 1131
NEFIRL TLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELT
Sbjct: 272 NEFIRLFQGDGNPGGNPGQFTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELT 331
Query: 1132 ASYLFETADDE 1164
ASYLFETADDE
Sbjct: 332 ASYLFETADDE 342
Score = 153 bits (387), Expect = 1e-35
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 139 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQTPSWQTLIYSGKILEDKRTLESYN 318
MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQTPSWQTLIYSGKILEDKRTLESYN
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQTPSWQTLIYSGKILEDKRTLESYN 60
Query: 319 ITDSGFIVMMIKKPRE 366
ITDSGFIVMMIKKPRE
Sbjct: 61 ITDSGFIVMMIKKPRE 76
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,360,864,684
Number of extensions: 22118525
Number of successful extensions: 54560
Number of sequences better than 10.0: 909
Number of HSP's gapped: 54332
Number of HSP's successfully gapped: 1941
Length of query: 401
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 270
Effective length of database: 621,205,444
Effective search space: 167725469880
Effective search space used: 167725469880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
0 |
| VF (FL, S) |
5 |
| AH (FL, L) |
0 |
| AF (FL, S) |
9 |
| SL (DIR, L) |
3 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
6 |
| CH (FL, L) |
0 |
| CF (FL, S) |
2 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |