Contig-U09825-1
Contig ID Contig-U09825-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09825-1 (Contig-U09825-1Q) /CSM_Contig/Contig-U09825-1Q.Seq.d
CCAAAAACAAGAAAAGGGTAGTACCACCACATACATACACTTTGTCGACA
TGTTATTTACTTTATTAAAAAGACATTTTGGAAATGAATTAAATAATATA
GTTTGGTTGGTTTTATTATATTTAATTCAAGGTATACCGATTGGATTATC
ATTTGGTACAATACCATTTTTATTACATAAACATGCAACATATACACAAA
TTGGTATTTTTACAATTAGTACATATCCATATTCATTGAAATTATTATGG
TCACCAATTGTTGATAGTTATTTCGTTCAATCATTTGGTAGAAGAAAATC
ATGGATTGTACCAATTCAAATTTTAGCTGGAATAGTTTTCATAACAATTA
GTTTTTTCATTGAAACACTTTTAGAACATGCTGAAACTAAAATAATCTAT
ATTACAATAGTATTCTTTTTATTAATATTTTTAATGGCAACTCAAGATAT
TGCTGTTGATGCGTGGGCATTAACTATTTTATCAAAACCTTATTTACATT
ATGCT----------TTCTCATTAATTCAATTCCCAAGTATTATCATTTT
CTCAATAATTTCAAGTAAATGGGTTAAAAATAAACCATTAACAATTTGGA
GTAATGCATATTTAGTTGGAGTATTCTTTATTTTAGTTAATATGTGTAGT
GTATTTTATTTCCCAAATTTAAATGGTGGTGAAATTAGTTGGAGTCATTT
CTTTTTGTTATTGATGATTTCATTATTTTCAAGTTTCTCTTATAATTTAA
TGTCAGTATCACAAGGTTCTTTCTTTTTAAAGATTAGTGATAAAAGTATT
GGTGGTACTTATGTAACCTTATTAAATACAATTGCCAATTTCGCTGGAAC
TTATCCAAAATTATTTATTTTAATGTTAATTGATAAATTAACAACAAGTG
AATGTATTGTAAATATATCAAATGATAATTCTTCATCTTCTTCATCTTCT
TCTTCTTTAATTTCTACTTCTTCAAATAATTTAACAACAACAACAACAAT
AATACAAGAACAACAACAACAAGTAATAATACATGATAATATATCAAAAG
AACTTTGTGCCGAACAAAATGGAAAATATAGAATTGAAAGAGATGGTTAT
TATCTCGTTGCAACTGGTGCAATAATTTATGGTGTTTTTATTTATTTTGT
TTTAAAGAGATATTTAACCCCAATTGAAAAATTAAAACTTTAATATAAAA
TTAAATAAATAAA

Gap gap included
Contig length 1203
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 200192
End point 198988
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09825
List of clone(s)

est1=VSK249F,1,506
est2=VSK249Z,507,1205
Translated Amino Acid sequence
QKQEKGSTTTYIHFVDMLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHK
HATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFI
ETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYA---

---FSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEI
SWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLF
ILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNIS
KELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL*ykik*i


Translated Amino Acid sequence (All Frames)
Frame A:
pktrkg*yhhihtlcrhviyfikktfwk*ik*yslvgfiifnsrytdwiiiwyntifit*
tcniytnwyfyn*yisifieiimvtnc**lfrsiiw*kkimdctnsnfswnsfhnn*ffh
*ntfrtc*n*nnlyynsilfinifngnsrycc*cvginyfiktlftlc---

---FSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEI
SWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLF
ILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNIS
KELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL*ykik*i

Frame B:
QKQEKGSTTTYIHFVDMLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHK
HATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFI
ETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYA---

---sh*fnsqvlsfsq*fqvnglkinh*qfgvmhi*leyslf*licvvyfisqi*mvvkl
vgvisfcy**fhyfqvslii*cqyhkvlsf*rlvikvlvvlm*py*iqlpisleliqnyl
f*c*lin*qqvnvl*iyqmiilhllhllll*flllqii*qqqqq*yknnnnk**ymiiyq
knfvpnkmenielkemviislqlvq*fmvflfilf*rdi*pqlkn*nfniklnk*

Frame C:
knkkrvvpphtytlstcylly*kdilemn*ii*fgwfyyi*fkvyrldyhlvqyhfyyin
mqhihklvflqlvhihih*nyyghqllivisfnhlveenhglyqfkf*le*fs*qlvfsl
khf*nmlklk*silq*ysfy*yf*wqlkilllmrgh*lfyqnliyim---

---linsipkyyhflnnfk*mg*k*tinnle*cifswsilyfs*yv*cilfpkfkww*n*
lesflfviddfiifkfll*fnvsitrfflfkd***kywwylcnlikyncqfrwnlskiiy
fnvn**innk*myckyik**ffiffiffffnfyffk*fnnnnnnntrttttsnnt**yik
rtlcrtkwki*n*krwllsrcnwcnnlwcfylfcfkeifnpn*kiktli*n*ink

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09825-1 (Contig-U09825-1Q)
/CSM_Contig/Contig-U09825-1Q.Seq.d
(1213 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09825-1 (Contig-U09825-1Q) /CSM_Contig/Conti... 1780 0.0
Contig-U09691-1 (Contig-U09691-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11935-1 (Contig-U11935-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U09778-1 (Contig-U09778-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U10328-1 (Contig-U10328-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U06672-1 (Contig-U06672-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U03301-1 (Contig-U03301-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U02881-1 (Contig-U02881-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U13153-1 (Contig-U13153-1Q) /CSM_Contig/Conti... 36 0.086

>Contig-U09825-1 (Contig-U09825-1Q) /CSM_Contig/Contig-U09825-1Q.Seq.d
Length = 1213

Score = 1780 bits (898), Expect = 0.0
Identities = 928/928 (100%)
Strand = Plus / Plus


Query: 1 ccaaaaacaagaaaagggtagtaccaccacatacatacactttgtcgacatgttatttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaaaaacaagaaaagggtagtaccaccacatacatacactttgtcgacatgttatttac 60


Query: 61 tttattaaaaagacattttggaaatgaattaaataatatagtttggttggttttattata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttattaaaaagacattttggaaatgaattaaataatatagtttggttggttttattata 120


Query: 121 tttaattcaaggtataccgattggattatcatttggtacaataccatttttattacataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaattcaaggtataccgattggattatcatttggtacaataccatttttattacataa 180


Query: 181 acatgcaacatatacacaaattggtatttttacaattagtacatatccatattcattgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acatgcaacatatacacaaattggtatttttacaattagtacatatccatattcattgaa 240


Query: 241 attattatggtcaccaattgttgatagttatttcgttcaatcatttggtagaagaaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attattatggtcaccaattgttgatagttatttcgttcaatcatttggtagaagaaaatc 300


Query: 301 atggattgtaccaattcaaattttagctggaatagttttcataacaattagttttttcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atggattgtaccaattcaaattttagctggaatagttttcataacaattagttttttcat 360


Query: 361 tgaaacacttttagaacatgctgaaactaaaataatctatattacaatagtattcttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaaacacttttagaacatgctgaaactaaaataatctatattacaatagtattcttttt 420


Query: 421 attaatatttttaatggcaactcaagatattgctgttgatgcgtgggcattaactatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attaatatttttaatggcaactcaagatattgctgttgatgcgtgggcattaactatttt 480


Query: 481 atcaaaaccttatttacattatgctnnnnnnnnnnttctcattaattcaattcccaagta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atcaaaaccttatttacattatgctnnnnnnnnnnttctcattaattcaattcccaagta 540


Query: 541 ttatcattttctcaataatttcaagtaaatgggttaaaaataaaccattaacaatttgga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttatcattttctcaataatttcaagtaaatgggttaaaaataaaccattaacaatttgga 600


Query: 601 gtaatgcatatttagttggagtattctttattttagttaatatgtgtagtgtattttatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtaatgcatatttagttggagtattctttattttagttaatatgtgtagtgtattttatt 660


Query: 661 tcccaaatttaaatggtggtgaaattagttggagtcatttctttttgttattgatgattt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcccaaatttaaatggtggtgaaattagttggagtcatttctttttgttattgatgattt 720


Query: 721 cattattttcaagtttctcttataatttaatgtcagtatcacaaggttctttctttttaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cattattttcaagtttctcttataatttaatgtcagtatcacaaggttctttctttttaa 780


Query: 781 agattagtgataaaagtattggtggtacttatgtaaccttattaaatacaattgccaatt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agattagtgataaaagtattggtggtacttatgtaaccttattaaatacaattgccaatt 840


Query: 841 tcgctggaacttatccaaaattatttattttaatgttaattgataaattaacaacaagtg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcgctggaacttatccaaaattatttattttaatgttaattgataaattaacaacaagtg 900


Query: 901 aatgtattgtaaatatatcaaatgataa 928
||||||||||||||||||||||||||||
Sbjct: 901 aatgtattgtaaatatatcaaatgataa 928


Score = 305 bits (154), Expect = 6e-83
Identities = 154/154 (100%)
Strand = Plus / Plus


Query: 1023 gtaataatacatgataatatatcaaaagaactttgtgccgaacaaaatggaaaatataga 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 gtaataatacatgataatatatcaaaagaactttgtgccgaacaaaatggaaaatataga 1082


Query: 1083 attgaaagagatggttattatctcgttgcaactggtgcaataatttatggtgtttttatt 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 attgaaagagatggttattatctcgttgcaactggtgcaataatttatggtgtttttatt 1142


Query: 1143 tattttgttttaaagagatatttaaccccaattg 1176
||||||||||||||||||||||||||||||||||
Sbjct: 1143 tattttgttttaaagagatatttaaccccaattg 1176


>Contig-U09691-1 (Contig-U09691-1Q) /CSM_Contig/Contig-U09691-1Q.Seq.d
Length = 1072

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 664 caaatttaaatggtggtgaaa 684
|||||||||||||||||||||
Sbjct: 490 caaatttaaatggtggtgaaa 510


>Contig-U11935-1 (Contig-U11935-1Q) /CSM_Contig/Contig-U11935-1Q.Seq.d
Length = 1220

Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 1135 tttttatttattttgtttta 1154
||||||||||||||||||||
Sbjct: 1162 tttttatttattttgtttta 1143


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,815
Number of Sequences: 6905
Number of extensions: 28815
Number of successful extensions: 3853
Number of sequences better than 10.0: 431
length of query: 1213
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1197
effective length of database: 5,564,391
effective search space: 6660576027
effective search space used: 6660576027
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U09825-1 (Contig-U09825-1Q) /CSM_Contig/Contig-U09825-1Q.Seq.d
(1213 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU270879) Dictyostelium discoideum vegetative cDNA clone:VS... 819 0.0 2
(AU270878) Dictyostelium discoideum vegetative cDNA clone:VS... 1001 0.0 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 1e-08 14
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 1e-06 21
(AL407606) T7 end of clone AV0AA003C12 of library AV0AA from... 52 2e-05 2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 42 9e-05 8
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 1e-04 19
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 38 4e-04 17
(AR545304) Sequence 435 from patent US 6747137. 58 8e-04 1
(ED238684) AUAC-aas35e10.g1 Ascaris suum whole genome shotgu... 58 8e-04 1
(BZ301936) KD1559.q1 Kluyveromyces delphensis Random Genomic... 58 8e-04 1
(DD010736) Diagnosis of known genetic Parameters within the ... 38 0.001 11
(AL844507) Plasmodium falciparum chromosome 8. 40 0.001 17
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 0.002 17
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 32 0.003 16
(AM479440) Vitis vinifera contig VV78X053150.7, whole genome... 30 0.003 7
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 34 0.004 23
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.007 14
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 0.010 12
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 46 0.011 16
(CG767183) TcB50.4_C07_T7 Tribolium BAC library Tribolium ca... 42 0.012 3
(AR553213) Sequence 8344 from patent US 6747137. 54 0.013 1
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 0.017 16
(AL844506) Plasmodium falciparum chromosome 7. 40 0.017 16
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 0.018 10
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 42 0.021 13
(AL844509) Plasmodium falciparum chromosome 13. 44 0.022 10
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.022 13
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 32 0.026 12
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 34 0.031 11
(Z50859) Caenorhabditis elegans Cosmid T26C5. 46 0.033 3
(AC173299) Bos taurus clone CH240-443A5, WORKING DRAFT SEQUE... 38 0.033 8
(DX559888) GH_MBb0081I23f GH_MBb Gossypium hirsutum genomic ... 36 0.037 4
(FH212753) CHO_OF3368xc12r1.ab1 CHO_OF3 Nicotiana tabacum ge... 40 0.041 3
(CS374532) Sequence 635 from Patent WO2006034879. 52 0.050 1
(AC016845) Homo sapiens chromosome 11, clone RP11-5E23, comp... 36 0.060 12
(AY863213) Smittium culisetae mitochondrion, complete genome. 34 0.062 8
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 34 0.062 13
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 38 0.062 13
(AC212306) Solanum lycopersicum cv. Heinz 1706, chromosome 0... 40 0.067 10
(AX458634) Sequence 180 from Patent WO0246454. 32 0.070 6
(AX345888) Sequence 959 from Patent WO0200928. 38 0.072 4
(AF288092) Naegleria gruberi mitochondrial DNA, complete gen... 40 0.077 8
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.086 17
(AM180355) Clostridium difficile 630 complete genome. 38 0.089 17
(AC189335) Brassica rapa subsp. pekinensis clone KBrB039A19,... 36 0.10 6
(AC208962) Nomascus leucogenys BAC clone CH271-28H12 from ch... 36 0.12 2
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.12 14
(AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 0.12 11
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 36 0.12 14
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 36 0.13 8
(AC180512) Strongylocentrotus purpuratus clone R3-3016D16, W... 38 0.13 6
(AX458578) Sequence 124 from Patent WO0246454. 38 0.13 6
(DQ832717) Phytophthora sojae mitochondrion, complete genome. 36 0.13 9
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.14 14
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 0.15 11
(CB389655) OSTF120F7_1 AD-wrmcDNA Caenorhabditis elegans cDN... 46 0.16 2
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 34 0.16 14
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 36 0.16 13
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 32 0.17 8
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 34 0.17 15
(AE017243) Mycoplasma hyopneumoniae J, complete genome. 34 0.17 19
(EA102837) Sequence 220 from patent US 7195870. 34 0.18 5
(AX323832) Sequence 320 from Patent WO0192565. 34 0.18 5
(AX278057) Sequence 220 from Patent WO0177375. 34 0.18 5
(BD452761) Diagnosis of Diseases Associated with tumor suppr... 40 0.19 3
(AX356426) Sequence 60 from Patent WO0181622. 40 0.19 3
(AX346409) Sequence 1480 from Patent WO0200928. 40 0.19 3
(AX251240) Sequence 208 from Patent WO0168912. 40 0.19 3
(DV184681) CT038_G01_CT038_3700_91.ab1 C. tentans tissue cul... 50 0.20 1
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 38 0.20 12
(DJ387414) Diagnosis of Diseases Associated with Apoptosis. 36 0.21 5
(AX344419) Sequence 266 from Patent WO0200926. 36 0.21 5
(AX281322) Sequence 64 from Patent WO0177164. 36 0.21 5
(BX511251) Zebrafish DNA sequence from clone CH211-222O13 in... 42 0.22 6
(FG082112) UI-FF-IH0-aaz-b-08-0-UI.r1 Ceratitis capitata adu... 40 0.22 2
(EJ143664) 1092343675415 Global-Ocean-Sampling_GS-27-01-01-1... 42 0.23 2
(Z98551) Plasmodium falciparum MAL3P6. 38 0.23 10
(BX936447) Zebrafish DNA sequence from clone DKEY-13D5 in li... 38 0.23 9
(CS468845) Sequence 36 from Patent EP1748080. 42 0.24 5
(CS419322) Sequence 36 from Patent WO2006094836. 42 0.24 5
(AX345669) Sequence 740 from Patent WO0200928. 36 0.24 5
(EK120316) 1092963360768 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.25 2
(EX316406) GQ02810.B7_G05 GQ028 - Cambium / phloem scrapping... 44 0.26 2
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 34 0.26 8
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 0.27 11
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 32 0.27 15
(AG390601) Mus musculus molossinus DNA, clone:MSMg01-207F09.... 34 0.29 3
(AX345303) Sequence 374 from Patent WO0200928. 38 0.29 4
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 34 0.29 12
(AX344507) Sequence 354 from Patent WO0200926. 34 0.30 7
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 32 0.30 12
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 32 0.31 12
(BZ047918) lki24e05.b1 B.oleracea002 Brassica oleracea genom... 32 0.31 4
(AJ235271) Rickettsia prowazekii strain Madrid E, complete g... 36 0.32 11
(DD391982) Method and nucleic acids for the improved treatme... 38 0.33 4
(DD391708) Method and nucleic acids for the improved treatme... 38 0.33 4
(DD061400) Methods and nucleic acids for the analysis of he... 38 0.33 4
(DD061254) Methods and nucleic acids for the analysis of he... 38 0.33 4
(CQ807238) Sequence 688 from Patent WO2004035803. 38 0.33 4

>(AU270879) Dictyostelium discoideum vegetative cDNA clone:VSK249,
3' end single read.
Length = 699

Score = 819 bits (413), Expect(2) = 0.0
Identities = 413/413 (100%)
Strand = Plus / Plus


Query: 516 ttctcattaattcaattcccaagtattatcattttctcaataatttcaagtaaatgggtt 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctcattaattcaattcccaagtattatcattttctcaataatttcaagtaaatgggtt 60


Query: 576 aaaaataaaccattaacaatttggagtaatgcatatttagttggagtattctttatttta 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaataaaccattaacaatttggagtaatgcatatttagttggagtattctttatttta 120


Query: 636 gttaatatgtgtagtgtattttatttcccaaatttaaatggtggtgaaattagttggagt 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttaatatgtgtagtgtattttatttcccaaatttaaatggtggtgaaattagttggagt 180


Query: 696 catttctttttgttattgatgatttcattattttcaagtttctcttataatttaatgtca 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catttctttttgttattgatgatttcattattttcaagtttctcttataatttaatgtca 240


Query: 756 gtatcacaaggttctttctttttaaagattagtgataaaagtattggtggtacttatgta 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtatcacaaggttctttctttttaaagattagtgataaaagtattggtggtacttatgta 300


Query: 816 accttattaaatacaattgccaatttcgctggaacttatccaaaattatttattttaatg 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 accttattaaatacaattgccaatttcgctggaacttatccaaaattatttattttaatg 360


Query: 876 ttaattgataaattaacaacaagtgaatgtattgtaaatatatcaaatgataa 928
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaattgataaattaacaacaagtgaatgtattgtaaatatatcaaatgataa 413

Score = 264 bits (133), Expect(2) = 0.0
Identities = 133/133 (100%)
Strand = Plus / Plus


Query: 1044 tcaaaagaactttgtgccgaacaaaatggaaaatatagaattgaaagagatggttattat 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcaaaagaactttgtgccgaacaaaatggaaaatatagaattgaaagagatggttattat 588


Query: 1104 ctcgttgcaactggtgcaataatttatggtgtttttatttattttgttttaaagagatat 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctcgttgcaactggtgcaataatttatggtgtttttatttattttgttttaaagagatat 648


Query: 1164 ttaaccccaattg 1176
|||||||||||||
Sbjct: 649 ttaaccccaattg 661

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,655,181,108
Number of extensions: 119667769
Number of successful extensions: 11461996
Number of sequences better than 10.0: 592
Length of query: 1213
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1189
Effective length of database: 97,308,875,965
Effective search space: 115700253522385
Effective search space used: 115700253522385
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09825-1 (Contig-U09825-1Q) /CSM_Contig/Contig-U09825-1Q.Seq.d
(1213 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY421721_1(AY421721|pid:none) Cryptococcus neoformans var. neofo... 162 2e-38
FM992691_439(FM992691|pid:none) Candida dubliniensis CD36 chromo... 160 6e-38
CR382135_396(CR382135|pid:none) Debaryomyces hansenii strain CBS... 160 6e-38
CP000501_15(CP000501|pid:none) Pichia stipitis CBS 6054 chromoso... 159 2e-37
CU928180_277(CU928180|pid:none) Kluyveromyces thermotolerans str... 151 5e-35
AM920435_213(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 147 7e-34
CR382126_414(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 146 1e-33
CR380957_289(CR380957|pid:none) Candida glabrata strain CBS138 c... 144 8e-33
AB172193_1(AB172193|pid:none) Macaca fascicularis brain cDNA clo... 142 2e-32
AB172658_1(AB172658|pid:none) Macaca fascicularis brain cDNA clo... 142 2e-32
AE016814_354(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 141 4e-32
(Q6AYY8) RecName: Full=Acetyl-coenzyme A transporter 1; ... 140 9e-32
AB039326_1(AB039326|pid:none) Rattus norvegicus Acatn gene for a... 140 9e-32
(O00400) RecName: Full=Acetyl-coenzyme A transporter 1; ... 140 1e-31
(P38318) RecName: Full=Uncharacterized membrane protein YBR220C;... 140 1e-31
CU633899_587(CU633899|pid:none) Podospora anserina genomic DNA c... 139 2e-31
AK135092_1(AK135092|pid:none) Mus musculus adult male olfactory ... 137 6e-31
(Q99J27) RecName: Full=Acetyl-coenzyme A transporter 1; ... 137 6e-31
AB016795_1(AB016795|pid:none) Mus musculus mRNA for acetyl-CoA t... 137 6e-31
BC055208_1(BC055208|pid:none) Danio rerio solute carrier family ... 136 2e-30
BC120078_1(BC120078|pid:none) Bos taurus solute carrier family 3... 135 3e-30
BC068928_1(BC068928|pid:none) Xenopus laevis hypothetical protei... 134 5e-30
T25289(T25289) hypothetical protein T26C5.3a - Caenorhabditis el... 131 5e-29
Z50859_3(Z50859|pid:none) Caenorhabditis elegans Cosmid T26C5, c... 131 5e-29
AE014296_2961(AE014296|pid:none) Drosophila melanogaster chromos... 130 7e-29
AM910988_212(AM910988|pid:none) Plasmodium knowlesi strain H chr... 128 4e-28
CR940352_230(CR940352|pid:none) Theileria annulata strain Ankara... 119 3e-25
FN357554_36(FN357554|pid:none) Schistosoma mansoni genome sequen... 116 2e-24
CR954201_162(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 114 5e-24
FN318636_1(FN318636|pid:none) Schistosoma japonicum isolate Anhu... 110 8e-23
FN318635_1(FN318635|pid:none) Schistosoma japonicum isolate Anhu... 110 8e-23
FN357524_4(FN357524|pid:none) Schistosoma mansoni genome sequenc... 105 3e-21
FN357524_6(FN357524|pid:none) Schistosoma mansoni genome sequenc... 100 1e-19
CP000713_585(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 82 3e-14
CP001172_689(CP001172|pid:none) Acinetobacter baumannii AB307-02... 82 4e-14
CP000521_3026(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 82 4e-14
CP000863_3006(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 82 4e-14
BA000045_1668(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 77 2e-12
CP000683_858(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 75 4e-12
AM746676_895(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 74 1e-11
CP000848_1184(CP000848|pid:none) Rickettsia rickettsii str. 'She... 74 1e-11
CP001147_1291(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 74 1e-11
CP000766_1222(CP000766|pid:none) Rickettsia rickettsii str. Iowa... 74 1e-11
CP000409_961(CP000409|pid:none) Rickettsia canadensis str. McKie... 72 3e-11
AM778957_107(AM778957|pid:none) Microcystis aeruginosa PCC 7806 ... 72 4e-11
BA000039_781(BA000039|pid:none) Thermosynechococcus elongatus BP... 72 5e-11
CU928160_417(CU928160|pid:none) Escherichia coli IAI1 chromosome... 72 5e-11
(Q92GA9) RecName: Full=Putative transporter ampG 3; 71 7e-11
CP001612_913(CP001612|pid:none) Rickettsia africae ESF-5, comple... 71 7e-11
AE006914_1214(AE006914|pid:none) Rickettsia conorii str. Malish ... 71 7e-11
X57315_3(X57315|pid:none) Haemophilus influenzae lic3 locus, con... 71 9e-11
CP000672_737(CP000672|pid:none) Haemophilus influenzae PittGG, c... 70 1e-10
CP000671_233(CP000671|pid:none) Haemophilus influenzae PittEE, c... 70 1e-10
AE009952_1008(AE009952|pid:none) Yersinia pestis KIM, complete g... 70 2e-10
AB0384(AB0384) Beta-lactamase induction signal transducer AmpG [... 70 2e-10
(P0AE16) RecName: Full=Protein ampG; &(P0AE17) RecName: Fu &AE0... 69 3e-10
AP009552_303(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 69 3e-10
CP000038_394(CP000038|pid:none) Shigella sonnei Ss046, complete ... 69 3e-10
X82160_1(X82160|pid:none) E.coli ampG5 gene. 69 3e-10
CP000034_280(CP000034|pid:none) Shigella dysenteriae Sd197, comp... 69 3e-10
BX640435_228(BX640435|pid:none) Bordetella parapertussis strain ... 69 3e-10
EU905140_1(EU905140|pid:none) Escherichia coli strain 493/89 reg... 69 3e-10
CP000243_448(CP000243|pid:none) Escherichia coli UTI89, complete... 69 3e-10
X82158_1(X82158|pid:none) E.coli ampG1 gene. 69 3e-10
CP000744_870(CP000744|pid:none) Pseudomonas aeruginosa PA7, comp... 69 4e-10
CU468135_2514(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 68 6e-10
CP000947_928(CP000947|pid:none) Haemophilus somnus 2336, complet... 68 6e-10
CP000822_2655(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 68 6e-10
AB194784_1(AB194784|pid:none) Enterobacter cloacae ampG gene, co... 68 6e-10
FP236842_2623(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 68 6e-10
CP000438_746(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA1... 68 7e-10
CP000687_1263(CP000687|pid:none) Actinobacillus pleuropneumoniae... 68 7e-10
AE004091_4217(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 68 7e-10
BX950851_1130(BX950851|pid:none) Erwinia carotovora subsp. atros... 67 1e-09
CP000569_1278(CP000569|pid:none) Actinobacillus pleuropneumoniae... 67 1e-09
CP001612_430(CP001612|pid:none) Rickettsia africae ESF-5, comple... 67 1e-09
CP000647_386(CP000647|pid:none) Klebsiella pneumoniae subsp. pne... 67 2e-09
CP000847_537(CP000847|pid:none) Rickettsia akari str. Hartford, ... 66 2e-09
CP000089_128(CP000089|pid:none) Dechloromonas aromatica RCB, com... 66 2e-09
CP001616_794(CP001616|pid:none) Tolumonas auensis DSM 9187, comp... 66 2e-09
CP000230_862(CP000230|pid:none) Rhodospirillum rubrum ATCC 11170... 66 2e-09
CP001291_3883(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 66 2e-09
CP000379_391(CP000379|pid:none) Burkholderia cenocepacia AU 1054... 66 3e-09
BX571966_608(BX571966|pid:none) Burkholderia pseudomallei strain... 66 3e-09
BX572594_299(BX572594|pid:none) Rhodopseudomonas palustris CGA00... 66 3e-09
CP000085_1813(CP000085|pid:none) Burkholderia thailandensis E264... 66 3e-09
CP000436_608(CP000436|pid:none) Haemophilus somnus 129PT, comple... 66 3e-09
CU928158_2488(CU928158|pid:none) Escherichia fergusonii ATCC 354... 66 3e-09
CP000759_504(CP000759|pid:none) Ochrobactrum anthropi ATCC 49188... 65 4e-09
CP000230_844(CP000230|pid:none) Rhodospirillum rubrum ATCC 11170... 65 4e-09
CP000680_4466(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 65 4e-09
CP001001_608(CP001001|pid:none) Methylobacterium radiotolerans J... 65 4e-09
CP000152_677(CP000152|pid:none) Burkholderia sp. 383 chromosome ... 65 4e-09
CP000964_4203(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 65 5e-09
(Q92I85) RecName: Full=Putative transporter ampG 4; &AE006914_5... 65 5e-09
CP000766_572(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 65 5e-09
CP001127_467(CP001127|pid:none) Salmonella enterica subsp. enter... 65 6e-09
AE014613_2261(AE014613|pid:none) Salmonella enterica subsp. ente... 65 6e-09
AE017220_486(AE017220|pid:none) Salmonella enterica subsp. enter... 65 6e-09
AM933172_422(AM933172|pid:none) Salmonella enterica subsp. enter... 65 6e-09
CP000026_2124(CP000026|pid:none) Salmonella enterica subsp. ente... 65 6e-09
CP001138_447(CP001138|pid:none) Salmonella enterica subsp. enter... 65 6e-09
CP001111_74(CP001111|pid:none) Stenotrophomonas maltophilia R551... 64 8e-09
AM233362_1789(AM233362|pid:none) Francisella tularensis subsp. h... 64 8e-09
CP000439_1588(CP000439|pid:none) Francisella tularensis subsp. n... 64 8e-09
CP000388_3801(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 64 8e-09
CP000608_115(CP000608|pid:none) Francisella tularensis subsp. tu... 64 8e-09
CP000155_1965(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 64 8e-09
CP000826_1085(CP000826|pid:none) Serratia proteamaculans 568, co... 64 1e-08
CP000113_4758(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 64 1e-08
AM902716_420(AM902716|pid:none) Bordetella petrii strain DSM 128... 64 1e-08
CR378665_172(CR378665|pid:none) Photobacterium profundum SS9; se... 64 1e-08
CP000774_3571(CP000774|pid:none) Parvibaculum lavamentivorans DS... 64 1e-08
CP001298_4214(CP001298|pid:none) Methylobacterium chloromethanic... 63 2e-08
AJ937765_40(AJ937765|pid:none) Uncultured candidate division OP8... 63 2e-08
CP000908_3979(CP000908|pid:none) Methylobacterium extorquens PA1... 63 2e-08
CP000250_663(CP000250|pid:none) Rhodopseudomonas palustris HaA2,... 62 3e-08
CP001339_108(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, c... 62 3e-08
(Q1RI01) RecName: Full=Putative transporter ampG 4; &CP000087_9... 62 3e-08
CP000838_264(CP000838|pid:none) Acaryochloris marina MBIC11017 p... 62 4e-08
AP008981_1415(AP008981|pid:none) Orientia tsutsugamushi str. Ike... 62 4e-08
CP000478_3979(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 62 4e-08
AM494475_516(AM494475|pid:none) Orientia tsutsugamushi Boryong c... 62 5e-08
CP000680_934(CP000680|pid:none) Pseudomonas mendocina ymp, compl... 62 5e-08
CP001359_1371(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 61 7e-08
CP000251_2553(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 61 7e-08
CP001037_4059(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 61 7e-08
CP000301_762(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 61 7e-08
CP000083_674(CP000083|pid:none) Colwellia psychrerythraea 34H, c... 61 9e-08
CP000117_1670(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 60 1e-07
AE016827_797(AE016827|pid:none) Mannheimia succiniciproducens MB... 60 1e-07
AP009384_571(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 60 1e-07
CP000157_1522(CP000157|pid:none) Erythrobacter litoralis HTCC259... 60 1e-07
CP001131_1277(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 60 1e-07
CP000117_1397(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 60 1e-07
CP000681_813(CP000681|pid:none) Shewanella putrefaciens CN-32, c... 60 2e-07
CP000462_1090(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 60 2e-07
CP000838_169(CP000838|pid:none) Acaryochloris marina MBIC11017 p... 60 2e-07
CP001032_959(CP001032|pid:none) Opitutus terrae PB90-1, complete... 60 2e-07
CP000302_764(CP000302|pid:none) Shewanella denitrificans OS217, ... 59 3e-07
CP001111_296(CP001111|pid:none) Stenotrophomonas maltophilia R55... 59 3e-07
CP000937_967(CP000937|pid:none) Francisella philomiragia subsp. ... 59 3e-07
CU234118_719(CU234118|pid:none) Bradyrhizobium sp. ORS278,comple... 59 3e-07
CP000319_3516(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 59 3e-07
AE016853_4280(AE016853|pid:none) Pseudomonas syringae pv. tomato... 59 5e-07
CP000058_3897(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 59 5e-07
CP000240_1394(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1... 59 5e-07
CP000781_1438(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 58 8e-07
CP000270_72(CP000270|pid:none) Burkholderia xenovorans LB400 chr... 58 8e-07
CP000127_2887(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 58 8e-07
CP001052_305(CP001052|pid:none) Burkholderia phytofirmans PsJN c... 58 8e-07
CP000446_3144(CP000446|pid:none) Shewanella sp. MR-4, complete g... 57 1e-06
CR628337_834(CR628337|pid:none) Legionella pneumophila str. Lens... 57 1e-06
AE017354_773(AE017354|pid:none) Legionella pneumophila subsp. pn... 57 1e-06
CP001252_3470(CP001252|pid:none) Shewanella baltica OS223, compl... 57 1e-06
CP000158_291(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 57 1e-06
CP000076_1234(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 57 1e-06
CP000926_4464(CP000926|pid:none) Pseudomonas putida GB-1, comple... 57 1e-06
CP000284_2477(CP000284|pid:none) Methylobacillus flagellatus KT,... 57 1e-06
AY458632_17(AY458632|pid:none) Uncultured marine bacterium 311 c... 57 2e-06
CP000444_805(CP000444|pid:none) Shewanella sp. MR-7, complete ge... 57 2e-06
CP000563_702(CP000563|pid:none) Shewanella baltica OS155, comple... 57 2e-06
AE014299_3707(AE014299|pid:none) Shewanella oneidensis MR-1, com... 57 2e-06
CP000697_1291(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 57 2e-06
CP000115_3043(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 57 2e-06
CP000606_2885(CP000606|pid:none) Shewanella loihica PV-4, comple... 57 2e-06
CP000075_4077(CP000075|pid:none) Pseudomonas syringae pv. syring... 56 3e-06
CT573326_4152(CT573326|pid:none) Pseudomonas entomophila str. L4... 56 3e-06
BX296526_10(BX296526|pid:none) Zebrafish DNA sequence from clone... 56 3e-06
AE004439_285(AE004439|pid:none) Pasteurella multocida subsp. mul... 56 3e-06
CP001349_6787(CP001349|pid:none) Methylobacterium nodulans ORS 2... 56 3e-06
CR522870_2927(CR522870|pid:none) Desulfotalea psychrophila LSv54... 55 4e-06
CP000472_1100(CP000472|pid:none) Shewanella piezotolerans WP3, c... 55 4e-06
CP000941_122(CP000941|pid:none) Xylella fastidiosa M12, complete... 55 4e-06
AE009952_3374(AE009952|pid:none) Yersinia pestis KIM, complete g... 55 5e-06
AM286690_1561(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 55 5e-06
CP000851_3100(CP000851|pid:none) Shewanella pealeana ATCC 700345... 55 5e-06
CP000744_4904(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 55 5e-06
AE016825_783(AE016825|pid:none) Chromobacterium violaceum ATCC 1... 55 5e-06
BC135924_1(BC135924|pid:none) Xenopus tropicalis hypothetical pr... 55 5e-06
CP000931_3168(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 55 7e-06
CP000821_3433(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 55 7e-06
CP000323_1153(CP000323|pid:none) Psychrobacter cryohalolentis K5... 55 7e-06
CP000447_3089(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 55 7e-06
CP001321_950(CP001321|pid:none) Haemophilus parasuis SH0165, com... 55 7e-06
CP001001_1616(CP001001|pid:none) Methylobacterium radiotolerans ... 55 7e-06
CP000090_191(CP000090|pid:none) Ralstonia eutropha JMP134 chromo... 54 1e-05
A95419(A95419) probable transmembrane transport protein SMa2337 ... 54 1e-05
CU459003_1394(CU459003|pid:none) Magnetospirillum gryphiswaldens... 54 1e-05
CU861906_181(CU861906|pid:none) Ralstonia solanacearum strain Mo... 54 1e-05
CP000513_1240(CP000513|pid:none) Dichelobacter nodosus VCS1703A,... 54 1e-05
AL591688_215(AL591688|pid:none) Sinorhizobium meliloti 1021 comp... 54 1e-05
CP000713_1753(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 54 1e-05
CU207366_2611(CU207366|pid:none) Gramella forsetii KT0803 comple... 54 1e-05
CP001172_997(CP001172|pid:none) Acinetobacter baumannii AB307-02... 54 1e-05
CP001025_3012(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 53 2e-05
CP000521_2676(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 53 2e-05
AX647601_1(AX647601|pid:none) Sequence 1793 from Patent EP1270724. 53 2e-05
(Q96ES6) RecName: Full=Major facilitator superfamily domain-cont... 53 2e-05
CP000847_708(CP000847|pid:none) Rickettsia akari str. Hartford, ... 53 2e-05
CP000614_3148(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 53 2e-05
CP001322_5165(CP001322|pid:none) Desulfatibacillum alkenivorans ... 52 3e-05
CP000381_1698(CP000381|pid:none) Neisseria meningitidis 053442, ... 52 3e-05
AE004969_1454(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, ... 52 3e-05
CP001103_3675(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 52 3e-05
(Q4UL88) RecName: Full=Putative transporter ampG 1; &CP000053_8... 52 4e-05
CP000489_1479(CP000489|pid:none) Paracoccus denitrificans PD1222... 52 4e-05
CP000943_4803(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 52 4e-05
(P38317) RecName: Full=Uncharacterized protein YBR219C; 52 5e-05
AP009385_130(AP009385|pid:none) Burkholderia multivorans ATCC 17... 52 6e-05
CP001157_1300(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 52 6e-05
CR548612_363(CR548612|pid:none) Paramecium tetraurelia macronucl... 52 6e-05
CP001281_3880(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 52 6e-05
CP000103_222(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 52 6e-05
CP000958_3094(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 51 7e-05
AE002098_340(AE002098|pid:none) Neisseria meningitidis MC58, com... 51 7e-05
BX571660_161(BX571660|pid:none) Wolinella succinogenes, complete... 51 7e-05
CP000655_1998(CP000655|pid:none) Polynucleobacter necessarius su... 51 7e-05
AM746676_2063(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 51 7e-05
CP000378_2470(CP000378|pid:none) Burkholderia cenocepacia AU 105... 51 7e-05
AE014185_357(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 51 9e-05
CP000683_583(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 51 9e-05
CP000155_4399(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 51 9e-05
CP000151_3263(CP000151|pid:none) Burkholderia sp. 383 chromosome... 51 9e-05
AE013598_499(AE013598|pid:none) Xanthomonas oryzae pv. oryzae KA... 51 9e-05
CP001154_2955(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 51 9e-05
CP000086_153(CP000086|pid:none) Burkholderia thailandensis E264 ... 51 9e-05
CP000613_926(CP000613|pid:none) Rhodospirillum centenum SW, comp... 50 1e-04
CP000848_732(CP000848|pid:none) Rickettsia rickettsii str. 'Shei... 50 1e-04
CP001503_3236(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 50 1e-04
AE005673_136(AE005673|pid:none) Caulobacter crescentus CB15, com... 50 1e-04
AE017282_311(AE017282|pid:none) Methylococcus capsulatus str. Ba... 50 1e-04
CP000116_253(CP000116|pid:none) Thiobacillus denitrificans ATCC ... 50 1e-04
AM286690_630(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 50 2e-04
CP001013_4081(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 50 2e-04
AP009384_1329(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 50 2e-04
AM920689_4068(AM920689|pid:none) Xanthomonas campestris pv. camp... 50 2e-04
(Q4V8E5) RecName: Full=Major facilitator superfamily domain-cont... 49 3e-04
CP000352_146(CP000352|pid:none) Ralstonia metallidurans CH34, co... 49 3e-04
AE016828_165(AE016828|pid:none) Coxiella burnetii RSA 493, compl... 49 3e-04
AL954747_2193(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 49 3e-04
CP000316_207(CP000316|pid:none) Polaromonas sp. JS666, complete ... 49 3e-04
AM039952_4014(AM039952|pid:none) Xanthomonas campestris pv. vesi... 49 3e-04
(Q92HQ3) RecName: Full=Putative transporter ampG 1; &AE006914_7... 49 3e-04
CP000529_150(CP000529|pid:none) Polaromonas naphthalenivorans CJ... 49 3e-04
CP001227_575(CP001227|pid:none) Rickettsia peacockii str. Rustic... 49 3e-04
AK009269_1(AK009269|pid:none) Mus musculus adult male tongue cDN... 49 4e-04
CP001612_590(CP001612|pid:none) Rickettsia africae ESF-5, comple... 49 4e-04
CP000010_2857(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 49 4e-04
CP000267_506(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 49 5e-04
CP001055_70(CP001055|pid:none) Elusimicrobium minutum Pei191, co... 49 5e-04
AE008923_3846(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 48 6e-04
CU207211_149(CU207211|pid:none) Herminiimonas arsenicoxydans chr... 48 6e-04
(Q68WQ5) RecName: Full=Putative transporter ampG 1; &AE017197_4... 48 6e-04
CP001010_1454(CP001010|pid:none) Polynucleobacter necessarius su... 48 6e-04
AE015928_1034(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 47 0.001
CP000140_1940(CP000140|pid:none) Parabacteroides distasonis ATCC... 47 0.001
CP000084_209(CP000084|pid:none) Candidatus Pelagibacter ubique H... 47 0.001
CP000361_327(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 47 0.001
CP000269_183(CP000269|pid:none) Janthinobacterium sp. Marseille,... 47 0.002
CP000510_1589(CP000510|pid:none) Psychromonas ingrahamii 37, com... 46 0.003
CP000489_1481(CP000489|pid:none) Paracoccus denitrificans PD1222... 46 0.003
CP001037_4236(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 46 0.003
CP000409_468(CP000409|pid:none) Rickettsia canadensis str. McKie... 45 0.004
CP000237_783(CP000237|pid:none) Neorickettsia sennetsu strain Mi... 45 0.004
BA000031_2356(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22... 44 0.009
CP000512_265(CP000512|pid:none) Acidovorax citrulli AAC00-1, com... 44 0.009
CP001139_711(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ... 44 0.009
CP001358_1321(CP001358|pid:none) Desulfovibrio desulfuricans sub... 44 0.011
CP000020_715(CP000020|pid:none) Vibrio fischeri ES114 chromosome... 44 0.015
BA000037_2596(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 44 0.015
AM942759_2576(AM942759|pid:none) Proteus mirabilis strain HI4320... 44 0.015
CP000285_2129(CP000285|pid:none) Chromohalobacter salexigens DSM... 43 0.026
CP000282_877(CP000282|pid:none) Saccharophagus degradans 2-40, c... 42 0.033
CP000117_2004(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 42 0.033
CR378668_134(CR378668|pid:none) Photobacterium profundum SS9; se... 42 0.044
AE008692_581(AE008692|pid:none) Zymomonas mobilis subsp. mobilis... 42 0.057
CP000629_532(CP000629|pid:none) Agrobacterium radiobacter K84 ch... 42 0.057
CP000139_591(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 41 0.074
CP000453_2660(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-... 41 0.074
AE016795_1677(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos... 41 0.097
FM954972_623(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 40 0.13
CP000158_333(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 40 0.17
CP001001_1275(CP001001|pid:none) Methylobacterium radiotolerans ... 40 0.22
CP000033_523(CP000033|pid:none) Lactobacillus acidophilus NCFM, ... 39 0.37
BA000023_1155(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 39 0.37
AJ699306_5(AJ699306|pid:none) Photobacterium damselae subsp. pis... 39 0.48
CP000112_845(CP000112|pid:none) Desulfovibrio desulfuricans G20,... 39 0.48
AE005174_2216(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 37 1.8
BX908798_840(BX908798|pid:none) Parachlamydia-related symbiont U... 37 1.8
CP000699_1202(CP000699|pid:none) Sphingomonas wittichii RW1, com... 37 1.8
B90862(B90862) probable membrane transport protein ECs1866 [impo... 37 1.8
AE014075_1713(AE014075|pid:none) Escherichia coli CFT073, comple... 36 2.4
EF531339_124(EF531339|pid:none) Candidatus Chloracidobacterium t... 36 2.4
CP000243_1534(CP000243|pid:none) Escherichia coli UTI89, complet... 36 2.4
CP000768_276(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 36 2.4
CP000411_1586(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 36 3.1
CP000091_321(CP000091|pid:none) Ralstonia eutropha JMP134 chromo... 36 3.1
CU928162_1473(CU928162|pid:none) Escherichia coli ED1a chromosom... 36 3.1
CR931695_12(CR931695|pid:none) Streptococcus pneumoniae strain n... 36 3.1
CP001140_1440(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 36 3.1
CP001029_1922(CP001029|pid:none) Methylobacterium populi BJ001, ... 35 4.1
AM260480_795(AM260480|pid:none) Ralstonia eutropha H16 chromosom... 35 5.3
CP000034_1284(CP000034|pid:none) Shigella dysenteriae Sd197, com... 35 7.0
CU468230_1624(CU468230|pid:none) Acinetobacter baumannii str. SD... 35 7.0
AL844507_276(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 35 7.0
CP000521_2153(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 35 7.0
CP001087_1497(CP001087|pid:none) Desulfobacterium autotrophicum ... 35 7.0
CP000575_504(CP000575|pid:none) Staphylothermus marinus F1, comp... 34 9.1

>AY421721_1(AY421721|pid:none) Cryptococcus neoformans var.
neoformans putative O-acetyl-coA transporter (CAS8)
gene, complete cds.
Length = 607

Score = 162 bits (410), Expect = 2e-38
Identities = 80/133 (60%), Positives = 100/133 (75%)
Frame = +2

Query: 107 LVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSF 286
LVLLYL+QGIP+GL+FGT+PFLL H +Y+Q+ IF +ST+PYSLKLLWSPIVD++FV+ +
Sbjct: 97 LVLLYLLQGIPLGLTFGTLPFLLKSHLSYSQLAIFALSTWPYSLKLLWSPIVDAWFVKKW 156

Query: 287 GRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAW 466
GRRKSWIVP+Q L G+ I IE L + ++T VF LI ATQDIAVD W
Sbjct: 157 GRRKSWIVPVQGLVGLGMWVIGGKIEEWLNVETVDVKFLTAVFGSLILAAATQDIAVDGW 216

Query: 467 ALTILSKPYLHYA 505
ALT+LS+P L YA
Sbjct: 217 ALTLLSQPNLSYA 229

Score = 63.9 bits (154), Expect = 1e-08
Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 5/193 (2%)
Frame = +3

Query: 597 WSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHXXXXXXXXXXXXXXYNLMSVSQGSFF 776
W A+ + ++ V FP+ + ++ + V +F
Sbjct: 415 WLYAFWARLAMAAISTLVVAGFPSNRASSVGTTYFLLIIATTLFSSLTSTVQFVDICAFH 474

Query: 777 LKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVXXXXXXXXXXXXXXX 956
+I+D IGGTY+TLLNT++N GT+PK IL +D LT + C V
Sbjct: 475 TQIADPLIGGTYMTLLNTVSNLGGTWPKPLILRSVDMLTVATCSVSSSSTTTSLRSKLSL 534

Query: 957 XXXXXXXXXXXXXXXXQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYL-----VATGA 1121
+ V H K LCA+ G+ ++RDGYY+ V GA
Sbjct: 535 SSSASGLG------------ECVTEH---GKNLCAQAGGECVMQRDGYYIMSAVCVTLGA 579

Query: 1122 IIYGVFIYFVLKR 1160
+ VFI ++KR
Sbjct: 580 GLLVVFILPMVKR 592

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,645,869,217
Number of extensions: 30513260
Number of successful extensions: 75759
Number of sequences better than 10.0: 309
Number of HSP's gapped: 75399
Number of HSP's successfully gapped: 345
Length of query: 404
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 273
Effective length of database: 621,205,444
Effective search space: 169589086212
Effective search space used: 169589086212
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.85 gvh: 0.67 alm: 0.17 top: 0.60 tms: 0.47 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

44.0 %: plasma membrane
32.0 %: endoplasmic reticulum
8.0 %: nuclear
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: cytoplasmic

>> prediction for Contig-U09825-1 is pla

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0