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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U09823-1
Contig ID Contig-U09823-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09823-1 (Contig-U09823-1Q) /CSM_Contig/Contig-U09823-1Q.Seq.d
ACAATTTCAAATATTTATGATAATCATTATAGAAATATAACTGAAAGAAT
TGATACTACTACCAATATTAATTGTAATGATCCCAATAATAATAATAATA
ATAATAATAATATTAATTTAGAAGATATTTTATCATTACTTGAATATTCA
ATTTTAAAATATAATATTTGTTACTCTCAAAATAATATTTTTCAATTATT
ATTTTTTAATAATTCAATTAATCATTTATATAAAATGGTACTTAAAGTTA
AAGGAATAACATCAAAACAAGTAATAGAAATTTATAATATGATATTTAGA
AAATGTGAAAAAGTTGGAATTATTCAACATGATTTTATAAATGCAATTTA
TTATCTTTGTATTAGATCACCAATATTTGAAAAATATTTACAAAACAAAT
CCAATTTATCTTTAAATAGATACACAAACTTTTTATACTACAGAAAATGT
TATTATGATGATAACAATTTTAATAATGGTGATGGTGATG----------
GAAAAGGTATTAGGTGAAACTCAACTCTATAATCATCTTTTAAATAAAAA
TCAACAAGAAAAGCAAAACCCTACTACTATACAACCAATTGAAAAATTAT
TAGAGAAATTAATAAATCAATTCTCTCATCACAGTATAAATAAACCAATT
AGTGAAGTTAATCAATTGGATAATTTAATCGAAAGTGATTTATTATTTTG
TTGTGATACTAGAAATATTAAATTATTTTTCNAACAATTGGATTTCATTA
TTGAAAATCCACAAATTAAATTCCATANTGCATCATATGATAATTTACTA
TTAAAAATCATTAAACTTTTAGAAAATGATTTTGATTTATTATTAAAATT
TATTGATAAATCAACTCAAATCCAACAAACAATTGAATTAAAATCCAGAA
TGTCTTTATCATATGCACTACTATCGATTAGTAAAAAATTCCAAAGATTA
GAAGTTTATGACTTTTTCAACAAACTTTAATTTCGCAAAAAAAA
Gap gap included
Contig length 984
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 583492
End point 582506
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09823
List of clone(s) 

est1=VSJ887F,1,491
est2=VSJ887Z,492,986
Translated Amino Acid sequence 
TISNIYDNHYRNITERIDTTTNINCNDPNNNNNNNNNINLEDILSLLEYSILKYNICYSQ
NNIFQLLFFNNSINHLYKMVLKVKGITSKQVIEIYNMIFRKCEKVGIIQHDFINAIYYLC
IRSPIFEKYLQNKSNLSLNRYTNFLYYRKCYYDDNNFNNGDGD---

---EKVLGETQLYNHLLNKNQQEKQNPTTIQPIEKLLEKLINQFSHHSINKPISEVNQLD
NLIESDLLFCCDTRNIKLFFXQLDFIIENPQIKFHXASYDNLLLKIIKLLENDFDLLLKF
IDKSTQIQQTIELKSRMSLSYALLSISKKFQRLEVYDFFNKL*frkk
Translated Amino Acid sequence (All Frames) 
Frame A:
TISNIYDNHYRNITERIDTTTNINCNDPNNNNNNNNNINLEDILSLLEYSILKYNICYSQ
NNIFQLLFFNNSINHLYKMVLKVKGITSKQVIEIYNMIFRKCEKVGIIQHDFINAIYYLC
IRSPIFEKYLQNKSNLSLNRYTNFLYYRKCYYDDNNFNNGDGD---

---EKVLGETQLYNHLLNKNQQEKQNPTTIQPIEKLLEKLINQFSHHSINKPISEVNQLD
NLIESDLLFCCDTRNIKLFFXQLDFIIENPQIKFHXASYDNLLLKIIKLLENDFDLLLKF
IDKSTQIQQTIELKSRMSLSYALLSISKKFQRLEVYDFFNKL*frkk

Frame B:
qfqifmiiiiei*lkelillpilivmipiiiiiiiiili*kifyhylniqf*niifvtlk
iiffnyyfliiqliiyikwylklke*hqnk**kfii*ylenvkklelfnmil*mqfiifv
ldhqylkniyktnpiyl*idtqtfyttenvimmitilimvmvm---

---kry*vklnsiiif*ikinkksktlllynqlkny*rn**inslitv*inqlvklinwi
i*skviyyfvvileilnyfsnnwisllkihklnsixhhmiiyy*kslnf*kmiliyy*nl
linqlksnkqln*npeclyhmhyyrlvknskd*kfmtfstnfnfakk

Frame C:
nfkyl**sl*kyn*kn*yyyqy*l**sq********y*frryfiit*ifnfki*ylllsk
*yfsiiif**fn*sfi*ngt*s*rnniktsnrnl*ydi*km*kswnyst*fykcnllsly
*itni*kiftkqiqfifk*ihklfilqkmll***qf**w*w*---

---kgir*nstl*ssfk*kstrkakpyyyttn*kiireinksilssqyk*tn**s*sig*
fnrk*fiill*y*ky*iifxtigfhy*kstn*ipxcii**ftiknh*tfrk*f*fiikiy
**insnptnn*ikiqnvfiicttid**kipkirsl*lfqqtlisqkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09823-1 (Contig-U09823-1Q)
/CSM_Contig/Contig-U09823-1Q.Seq.d
         (994 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09823-1 (Contig-U09823-1Q) /CSM_Contig/Conti...  1661  0.0
Contig-U11411-1 (Contig-U11411-1Q) /CSM_Contig/Conti...    46  7e-05
Contig-U04747-1 (Contig-U04747-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12090-1 (Contig-U12090-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11395-1 (Contig-U11395-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U09816-1 (Contig-U09816-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U04993-1 (Contig-U04993-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U03183-1 (Contig-U03183-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13794-1 (Contig-U13794-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U10907-1 (Contig-U10907-1Q) /CSM_Contig/Conti...    38  0.018

>Contig-U09823-1 (Contig-U09823-1Q) /CSM_Contig/Contig-U09823-1Q.Seq.d
          Length = 994

 Score = 1661 bits (838), Expect = 0.0
 Identities = 874/874 (100%)
 Strand = Plus / Plus

                                                                       
Query: 113 ttaatttagaagatattttatcattacttgaatattcaattttaaaatataatatttgtt 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttaatttagaagatattttatcattacttgaatattcaattttaaaatataatatttgtt 172

                                                                       
Query: 173 actctcaaaataatatttttcaattattattttttaataattcaattaatcatttatata 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 actctcaaaataatatttttcaattattattttttaataattcaattaatcatttatata 232

                                                                       
Query: 233 aaatggtacttaaagttaaaggaataacatcaaaacaagtaatagaaatttataatatga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aaatggtacttaaagttaaaggaataacatcaaaacaagtaatagaaatttataatatga 292

                                                                       
Query: 293 tatttagaaaatgtgaaaaagttggaattattcaacatgattttataaatgcaatttatt 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tatttagaaaatgtgaaaaagttggaattattcaacatgattttataaatgcaatttatt 352

                                                                       
Query: 353 atctttgtattagatcaccaatatttgaaaaatatttacaaaacaaatccaatttatctt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atctttgtattagatcaccaatatttgaaaaatatttacaaaacaaatccaatttatctt 412

                                                                       
Query: 413 taaatagatacacaaactttttatactacagaaaatgttattatgatgataacaatttta 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taaatagatacacaaactttttatactacagaaaatgttattatgatgataacaatttta 472

                                                                       
Query: 473 ataatggtgatggtgatgnnnnnnnnnngaaaaggtattaggtgaaactcaactctataa 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ataatggtgatggtgatgnnnnnnnnnngaaaaggtattaggtgaaactcaactctataa 532

                                                                       
Query: 533 tcatcttttaaataaaaatcaacaagaaaagcaaaaccctactactatacaaccaattga 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcatcttttaaataaaaatcaacaagaaaagcaaaaccctactactatacaaccaattga 592

                                                                       
Query: 593 aaaattattagagaaattaataaatcaattctctcatcacagtataaataaaccaattag 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aaaattattagagaaattaataaatcaattctctcatcacagtataaataaaccaattag 652

                                                                       
Query: 653 tgaagttaatcaattggataatttaatcgaaagtgatttattattttgttgtgatactag 712
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tgaagttaatcaattggataatttaatcgaaagtgatttattattttgttgtgatactag 712

                                                                       
Query: 713 aaatattaaattatttttcnaacaattggatttcattattgaaaatccacaaattaaatt 772
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aaatattaaattatttttcnaacaattggatttcattattgaaaatccacaaattaaatt 772

                                                                       
Query: 773 ccatantgcatcatatgataatttactattaaaaatcattaaacttttagaaaatgattt 832
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ccatantgcatcatatgataatttactattaaaaatcattaaacttttagaaaatgattt 832

                                                                       
Query: 833 tgatttattattaaaatttattgataaatcaactcaaatccaacaaacaattgaattaaa 892
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tgatttattattaaaatttattgataaatcaactcaaatccaacaaacaattgaattaaa 892

                                                                       
Query: 893 atccagaatgtctttatcatatgcactactatcgattagtaaaaaattccaaagattaga 952
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 atccagaatgtctttatcatatgcactactatcgattagtaaaaaattccaaagattaga 952

                                             
Query: 953 agtttatgactttttcaacaaactttaatttcgc 986
           ||||||||||||||||||||||||||||||||||
Sbjct: 953 agtttatgactttttcaacaaactttaatttcgc 986


 Score =  167 bits (84), Expect = 3e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  acaatttcaaatatttatgataatcattatagaaatataactgaaagaattgatactact 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  acaatttcaaatatttatgataatcattatagaaatataactgaaagaattgatactact 60

                                  
Query: 61 accaatattaattgtaatgatccc 84
          ||||||||||||||||||||||||
Sbjct: 61 accaatattaattgtaatgatccc 84


>Contig-U11411-1 (Contig-U11411-1Q) /CSM_Contig/Contig-U11411-1Q.Seq.d
          Length = 1518

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 454 tatgatgataacaattttaataatggtgatg 484
           ||||||||||| ||||||||||||| |||||
Sbjct: 161 tatgatgataataattttaataatgatgatg 191


>Contig-U04747-1 (Contig-U04747-1Q) /CSM_Contig/Contig-U04747-1Q.Seq.d
          Length = 557

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 539 tttaaataaaaatcaacaagaaaag 563
           |||||||||||| ||||||||||||
Sbjct: 175 tttaaataaaaaacaacaagaaaag 199


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,662
Number of Sequences: 6905
Number of extensions: 33662
Number of successful extensions: 4553
Number of sequences better than 10.0: 592
length of query: 994
length of database: 5,674,871
effective HSP length: 16
effective length of query: 978
effective length of database: 5,564,391
effective search space: 5441974398
effective search space used: 5441974398
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA 
Query= Contig-U09823-1 (Contig-U09823-1Q) /CSM_Contig/Contig-U09823-1Q.Seq.d
         (994 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270636) Dictyostelium discoideum vegetative cDNA clone:VS...   561   0.0    2
(AU270635) Dictyostelium discoideum vegetative cDNA clone:VS...   502   0.0    3
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    40   2e-06  18
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      44   2e-04  19
(CU856003) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    56   0.003  1
(CT135720) Sus scrofa genomic clone CH242-200C14, genomic su...    56   0.003  1
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.012  13
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   0.012  17
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    42   0.018  18
(AC188035) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    40   0.020  5
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    36   0.024  19
(EC822123) SME00004194 esmbsro2 Sawyeria marylandensis cDNA,...    52   0.041  1
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ...    34   0.044  16
(AZ686132) ENTLU43TF Entamoeba histolytica Sheared DNA Entam...    40   0.044  2
(AZ692700) ENTGU31TR Entamoeba histolytica Sheared DNA Entam...    40   0.045  2
(AZ529940) ENTBH96TF Entamoeba histolytica Sheared DNA Entam...    40   0.046  2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   0.053  12
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   0.055  18
(AC074176) Arabidopsis thaliana chromosome 1 BAC T2H7 genomi...    40   0.074  7
(AC183496) Brassica oleracea, *** SEQUENCING IN PROGRESS ***.      48   0.094  2
(AC116720) Mus musculus chromosome 3, clone RP23-223N19, com...    40   0.097  2
(AC162890) Mus musculus chromosome 3, clone RP23-362E13, com...    40   0.100  2
(AL844507) Plasmodium falciparum chromosome 8.                     32   0.11   17
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.12   19
(AE017263) Mesoplasma florum L1 complete genome.                   32   0.12   19
(AL034393) Caenorhabditis elegans YAC Y18D10A.                     40   0.17   6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   0.17   14
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.20   18
(AC179541) Strongylocentrotus purpuratus clone R3-6K14, WORK...    38   0.21   6
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    34   0.22   12
(AL954180) Zebrafish DNA sequence from clone CH211-222A10.         48   0.26   5
(AC193992) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    34   0.28   11
(AC173843) Strongylocentrotus purpuratus clone R3-1008L21, W...    40   0.29   4
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    32   0.29   12
(AL035476) Plasmodium falciparum MAL4P3.                           34   0.31   10
(CU633834) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.32   9
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    40   0.33   16
(AC209270) Populus trichocarpa clone POP015-B22, complete se...    32   0.34   10
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    32   0.46   15
(BH949893) odi90b05.b1 B.oleracea002 Brassica oleracea genom...    34   0.47   2
(BZ075511) lkh08f03.b1 B.oleracea002 Brassica oleracea genom...    46   0.48   2
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   0.49   10
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    38   0.51   7
(AC152674) Bos taurus clone CH240-13N10, *** SEQUENCING IN P...    34   0.55   10
(CR558302) Zebrafish DNA sequence from clone DKEY-33M11 in l...    38   0.55   5
(CU633252) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.56   8
(EK154316) 1095456066838 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.57   2
(CT025861) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.64   1
(FG915286) UCRVU08_CCNS9790_g1 Cowpea IT97K-461-4 Mixed Tiss...    48   0.64   1
(FF393733) MOODP32TF MOO Vigna unguiculata cDNA 5', mRNA seq...    48   0.64   1
(FE184144) LV_NC_RA33B04r Litopenaeus vannamei nerve cord cD...    48   0.64   1
(EW927590) G894P5171RB18.T0 Ixodes scapularis Pooled Non-inf...    48   0.64   1
(EW927589) G894P5171FB18.T0 Ixodes scapularis Pooled Non-inf...    48   0.64   1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    30   0.66   16
(AC141787) Apis mellifera clone CH224-59E7, WORKING DRAFT SE...    36   0.67   5
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    34   0.67   9
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   0.75   16
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   0.90   11
(AC123415) Rattus norvegicus clone CH230-159P3, *** SEQUENCI...    40   0.91   6
(EA700169) Sequence 79048 from patent US 7365185.                  38   0.92   3
(AM488294) Vitis vinifera contig VV78X019744.7, whole genome...    46   1.0    3
(CP000393) Trichodesmium erythraeum IMS101, complete genome.       36   1.0    2
(BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com...    32   1.1    19
(AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp...    32   1.1    19
(EJ173540) 1092344092096 Global-Ocean-Sampling_GS-27-01-01-1...    32   1.2    4
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    34   1.2    18
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    30   1.3    14
(AC212433) Solanum lycopersicum chromosome 11 clone C11HBa00...    42   1.3    7
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    32   1.3    9
(AC179991) Strongylocentrotus purpuratus clone R3-17A10, WOR...    40   1.3    3
(AF052006) Dictyostelium discoideum C-module-binding factor ...    34   1.4    4
(AC162348) Bos taurus clone CH240-111A12, WORKING DRAFT SEQU...    38   1.4    7
(AC226655) Ornithorhynchus anatinus clone OA_Bb-150A18, WORK...    40   1.5    4
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   1.5    12
(AM285318) Spiroplasma citri GII3-3X chromosome, contig Cont...    30   1.6    6
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    32   1.7    12
(EK264318) 1095462206781 Global-Ocean-Sampling_GS-31-01-01-1...    34   1.7    2
(FH810039) OSB_1198004xi06f1.ab1 OSB_1198 Nicotiana tabacum ...    36   1.7    2
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         30   1.8    13
(FH808624) OSB_1198003xp01f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.0    2
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    32   2.0    11
(FH809754) OSB_1198002xb22f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.0    2
(FH808322) OSB_1198003xi03f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.0    2
(FH808326) OSB_1198003xi19f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.0    2
(FH808586) OSB_1198003xf21f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.1    2
(FH808565) OSB_1198003xb07f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.1    2
(FH809483) OSB_1198002xe06f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.1    2
(FH809184) OSB_1198005xl11r1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.1    2
(FH809488) OSB_1198002xe20f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.1    2
(FH808318) OSB_1198003xg19f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.1    2
(AC209116) Chlorocebus aethiops clone CH252-383J20, WORKING ...    38   2.1    7
(AM480980) Vitis vinifera contig VV78X210810.5, whole genome...    36   2.1    3
(AL844509) Plasmodium falciparum chromosome 13.                    40   2.1    16
(FH810294) OSB_1198004xj12f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.1    2
(FH810135) OSB_1198004xb05f1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.1    2
(FH810371) OSB_1198004xn22r1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.2    2
(AM475906) Vitis vinifera, whole genome shotgun sequence, co...    40   2.2    3
(FH809677) OSB_1198002xb05r1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.2    2
(AC023267) Homo sapiens clone RP11-811H18, LOW-PASS SEQUENCE...    40   2.2    4
(FH810357) OSB_1198004xj22r1.ab1 OSB_1198 Nicotiana tabacum ...    36   2.2    2

>(AU270636) Dictyostelium discoideum vegetative cDNA clone:VSJ887,
           3' end single read.
          Length = 495

 Score =  561 bits (283), Expect(2) = 0.0
 Identities = 289/289 (100%)
 Strand = Plus / Plus


Query: 502 aaaaggtattaggtgaaactcaactctataatcatcttttaaataaaaatcaacaagaaa 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   aaaaggtattaggtgaaactcaactctataatcatcttttaaataaaaatcaacaagaaa 61


Query: 562 agcaaaaccctactactatacaaccaattgaaaaattattagagaaattaataaatcaat 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  agcaaaaccctactactatacaaccaattgaaaaattattagagaaattaataaatcaat 121


Query: 622 tctctcatcacagtataaataaaccaattagtgaagttaatcaattggataatttaatcg 681
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tctctcatcacagtataaataaaccaattagtgaagttaatcaattggataatttaatcg 181


Query: 682 aaagtgatttattattttgttgtgatactagaaatattaaattatttttcnaacaattgg 741
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aaagtgatttattattttgttgtgatactagaaatattaaattatttttcnaacaattgg 241


Query: 742 atttcattattgaaaatccacaaattaaattccatantgcatcatatga 790
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atttcattattgaaaatccacaaattaaattccatantgcatcatatga 290

 Score =  248 bits (125), Expect(2) = 0.0
 Identities = 125/125 (100%)
 Strand = Plus / Plus


Query: 862 caactcaaatccaacaaacaattgaattaaaatccagaatgtctttatcatatgcactac 921
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caactcaaatccaacaaacaattgaattaaaatccagaatgtctttatcatatgcactac 421


Query: 922 tatcgattagtaaaaaattccaaagattagaagtttatgactttttcaacaaactttaat 981
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tatcgattagtaaaaaattccaaagattagaagtttatgactttttcaacaaactttaat 481


Query: 982 ttcgc 986
           |||||
Sbjct: 482 ttcgc 486

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,188,555,846
Number of extensions: 81465785
Number of successful extensions: 7665148
Number of sequences better than 10.0: 347
Length of query: 994
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 970
Effective length of database: 97,308,875,965
Effective search space: 94389609686050
Effective search space used: 94389609686050
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09823-1 (Contig-U09823-1Q) /CSM_Contig/Contig-U09823-1Q.Seq.d
         (994 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116924_12(AC116924|pid:none) Dictyostelium discoideum chromoso...    47   0.001
AC117070_28(AC117070|pid:none) Dictyostelium discoideum chromoso...    44   0.007
AC116984_187(AC116984|pid:none) Dictyostelium discoideum chromos...    44   0.011
T18288(T18288)ABC transport protein - slime mold (Dictyostelium ...    41   0.056
CP000812_875(CP000812|pid:none) Thermotoga lettingae TMO, comple...    37   0.80
AC115683_2(AC115683|pid:none) Dictyostelium discoideum chromosom...    35   3.1
GM959788_1(GM959788|pid:none) Sequence 6742 from Patent WO200814...    35   4.0
AC116977_3(AC116977|pid:none) Dictyostelium discoideum chromosom...    35   5.2
AC117176_50(AC117176|pid:none) Dictyostelium discoideum chromoso...    35   5.2
CP000139_3023(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    34   8.8

>AC116924_12(AC116924|pid:none) Dictyostelium discoideum chromosome 2
            map 6357117-6445670 strain AX4, complete sequence.
          Length = 1401

 Score = 47.0 bits (110), Expect = 0.001
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +3

Query: 543  NKNQQEKQNPTTIQPIEKLLEKLINQFSHHSINKPISEV-------NQLDNLIESDLLFC 701
            N N Q K+N   I   + +L++L+ + SH    +  S V             ++ DL FC
Sbjct: 942  NNNYQTKENKQFINSFDDILKELMERLSHSHAKRISSSVFPDFLGKTNFMKYMDKDLEFC 1001

Query: 702  CDTRNIKLFFXQLDFIIE 755
             D + I LFF QLDFI E
Sbjct: 1002 LDIKRIDLFFKQLDFINE 1019

 Score = 34.3 bits (77), Expect = 6.8
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +1

Query: 229 YKMVLKVKGITSKQVIEIYNMIFRKCEKVGIIQHDFINAIYYLCIRSPIFEKYLQNKSNL 408
           ++++++ K  T K V EIY ++     K   I H   +A +YL +RS  F KY+  + NL
Sbjct: 821 FQILIQSKDATIKLVKEIYQLL---SSKFVTIYHTHHHAFFYLNLRSRKFTKYILTRLNL 877

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,085,805,409
Number of extensions: 16920260
Number of successful extensions: 40492
Number of sequences better than 10.0: 10
Number of HSP's gapped: 40430
Number of HSP's successfully gapped: 12
Length of query: 331
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 202
Effective length of database: 627,614,014
Effective search space: 126778030828
Effective search space used: 126778030828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.49  gvh: 0.36  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: peroxisomal

>> prediction for Contig-U09823-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0