Contig-U09821-1 |
Contig ID |
Contig-U09821-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1057 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
4018539 |
End point |
4017480 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U09821 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.18 |
Homology vs DNA |
Query= Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Contig-U09821-1Q.Seq.d (1067 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU270295) Dictyostelium discoideum vegetative cDNA clone:VS... 1187 0.0 1 (AU270294) Dictyostelium discoideum vegetative cDNA clone:VS... 347 0.0 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 46 1e-10 16 (EL488883) CHUS4088.b1_O14.ab1 CHU(LMS) puzzle sunflower Hel... 70 2e-07 1 (EL488719) CHUS3939.b1_F01.ab1 CHU(LMS) puzzle sunflower Hel... 70 2e-07 1 (AJ437721) Helianthus annuus EST clone HaDplR203C06. 70 2e-07 1 (AJ437702) Helianthus annuus EST clone HaDplR203A05. 70 2e-07 1 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 40 3e-07 17 (CR382399) Plasmodium falciparum chromosome 6, complete sequ... 40 7e-07 16 (AC115581) Dictyostelium discoideum chromosome 2 map complem... 36 2e-06 10 (AL844507) Plasmodium falciparum chromosome 8. 40 4e-06 14 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 6e-06 13 (CP000312) Clostridium perfringens SM101, complete genome. 38 1e-05 19 (AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 2e-05 15 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 3e-05 16 (AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 36 3e-05 16 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 36 4e-05 11 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 5e-05 13 (AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 7e-05 14 (AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 42 9e-05 13 (AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 40 1e-04 12 (AE017263) Mesoplasma florum L1 complete genome. 36 1e-04 20 (AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 46 1e-04 10 (AC210132) Populus trichocarpa clone POP011-D09, complete se... 42 2e-04 10 (AL031745) Plasmodium falciparum DNA from MAL1P2. 36 2e-04 18 (AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 2e-04 14 (AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 42 2e-04 11 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 3e-04 15 (AC225528) Medicago truncatula clone mth2-116k19, WORKING DR... 44 3e-04 10 (AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 36 5e-04 14 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 36 7e-04 15 (AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 40 7e-04 13 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 8e-04 16 (AE017308) Mycoplasma mobile 163K complete genome. 32 8e-04 18 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 8e-04 15 (AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.001 17 (Z98551) Plasmodium falciparum MAL3P6. 42 0.001 11 (AC176976) Strongylocentrotus purpuratus clone R3-34P20, WOR... 42 0.001 5 (DD010735) Diagnosis of known genetic Parameters within the ... 40 0.001 8 (AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 0.002 16 (AC208999) Populus trichocarpa clone POP021-B12, complete se... 40 0.002 9 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 44 0.002 13 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 0.002 21 (AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 38 0.002 13 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.002 15 (CR548612) Paramecium tetraurelia macronuclear largest chrom... 36 0.002 20 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.003 15 (AC181971) Medicago truncatula clone mth2-13b13, WORKING DRA... 44 0.003 6 (AF494278) Chaetosphaeridium globosum chloroplast, complete ... 34 0.003 9 (AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 36 0.003 12 (BP647543) Arabidopsis thaliana cDNA clone:RAFL19-75-M23, 3'... 56 0.003 1 (FG161743) AGN_RNC018xp10r1.ab1 AGN_RNC Nicotiana tabacum cD... 56 0.003 1 (AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 36 0.003 11 (CR385032) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.003 8 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 0.003 8 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 0.003 15 (AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 0.004 15 (AC225493) Medicago truncatula clone mth2-46d11, WORKING DRA... 44 0.004 9 (AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 34 0.004 14 (AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.004 14 (AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 46 0.004 14 (AL008970) Plasmodium falciparum MAL3P4. 36 0.004 11 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 36 0.005 11 (AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 38 0.005 6 (BX470098) Zebrafish DNA sequence from clone DKEY-148D16 in ... 46 0.005 9 (AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 0.005 16 (BA000016) Clostridium perfringens str. 13 DNA, complete gen... 36 0.006 21 (AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 34 0.006 9 (AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.007 13 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 0.007 10 (CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 0.007 16 (AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 0.007 11 (AC116987) Dictyostelium discoideum chromosome 2 map 3527441... 36 0.007 7 (AL844509) Plasmodium falciparum chromosome 13. 42 0.008 8 (AL035475) Plasmodium falciparum MAL4P2. 32 0.009 13 (AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.009 12 (EK295790) 1095462346721 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.010 3 (DQ832718) Phytophthora ramorum mitochondrion, complete genome. 32 0.010 9 (EU427470) Phytophthora ramorum strain CBS 101553 mitochondr... 32 0.010 9 (AC168468) Strongylocentrotus purpuratus clone R3-35C6, WORK... 38 0.011 7 (BT002097) Arabidopsis thaliana unknown protein (At4g01040) ... 54 0.011 1 (AY128359) Arabidopsis thaliana unknown protein (At4g01040) ... 54 0.011 1 (AL161491) Arabidopsis thaliana DNA chromosome 4, contig fra... 54 0.011 1 (AF007269) Arabidopsis thaliana BAC IG002N01. 54 0.011 1 (CU695322) Brassica rapa subsp. pekinensis clone KBrH108F05,... 54 0.011 1 (BX828310) Arabidopsis thaliana Full-length cDNA Complete se... 54 0.011 1 (DU854264) 54237 Tomato HindIII BAC Library Solanum lycopers... 54 0.011 1 (DU691930) Bst024460 lambda03 Boechera stricta genomic clone... 54 0.011 1 (AL091386) Arabidopsis thaliana genome survey sequence SP6 e... 54 0.011 1 (DU122702) KBrH108F05F Brassica rapa BAC library KBrH Brassi... 54 0.011 1 (EV114966) 0120278 Brassica napus Root library Brassica napu... 54 0.011 1 (EV114380) 0119692 Brassica napus Root library Brassica napu... 54 0.011 1 (EV114296) 0119608 Brassica napus Root library Brassica napu... 54 0.011 1 (ES107908) 134369_2306_3245 Arabidopsis ovule high throughpu... 54 0.011 1 (EL121718) EB3RODY01CXD7M 8-day Arabidopsis seedlings, aeria... 54 0.011 1 (EE552100) BNQA_UP_068_B06_30MAY2005_046 Brassica napus BNQA... 54 0.011 1 (AV782468) Arabidopsis thaliana cDNA clone:RAFL04-17-K09, 3'... 54 0.011 1 (AJ766868) Gerbera hybrid cv. 'Terra Nero' EST, clone G00009... 54 0.011 1 (AJ760769) Gerbera hybrid cv. 'Terra Regina' EST, clone G000... 54 0.011 1 (CD816124) BN15.028K01F020326 BN15 Brassica napus cDNA clone... 54 0.011 1
>(AU270295) Dictyostelium discoideum vegetative cDNA clone:VSJ672, 3' end single read. Length = 654
Score = 1187 bits (599), Expect = 0.0 Identities = 599/599 (100%) Strand = Plus / Plus
Query: 416 attagtgattgaaggtatagttcatataaataaacaattaagagatccatttttaatttc 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 attagtgattgaaggtatagttcatataaataaacaattaagagatccatttttaatttc 61
Query: 476 actctctgaaaaattacattcaattggaaaagaaataattttagttatttatccattcag 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 actctctgaaaaattacattcaattggaaaagaaataattttagttatttatccattcag 121
Query: 536 acaaaaaggacaagaaactggatttggagcaaaagattttgaattattatcaaatcatat 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 acaaaaaggacaagaaactggatttggagcaaaagattttgaattattatcaaatcatat 181
Query: 596 tgatggagtttcattaatgacatatgattttggaccaagtggaggtatgaatgcaccaaa 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 tgatggagtttcattaatgacatatgattttggaccaagtggaggtatgaatgcaccaaa 241
Query: 656 agtttgggttgaagataatttaaaatttttattaccaaatggagaaaataaaaattctaa 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 agtttgggttgaagataatttaaaatttttattaccaaatggagaaaataaaaattctaa 301
Query: 716 aaagattttcatgggtattccattctatggatataaaattggtgaaaatgaccaatcaga 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 aaagattttcatgggtattccattctatggatataaaattggtgaaaatgaccaatcaga 361
Query: 776 tgcaatagttggttcagaattcatttcagttttaaaacaaaataaatcaaagaaattaaa 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 tgcaatagttggttcagaattcatttcagttttaaaacaaaataaatcaaagaaattaaa 421
Query: 836 atttgatcaaaatactcatgaacatatttttacatataaaaataaaaagaatcaacaagt 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 atttgatcaaaatactcatgaacatatttttacatataaaaataaaaagaatcaacaagt 481
Query: 896 ttcaatgacatatccatcattattatttattgaagatcgtattcaattagcaaataaata 955 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 ttcaatgacatatccatcattattatttattgaagatcgtattcaattagcaaataaata 541
Query: 956 taaagtttccatttcaatttgggaaattggtcaaggtttagattattttaggatttatt 1014 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 542 taaagtttccatttcaatttgggaaattggtcaaggtttagattattttaggatttatt 600
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,607,094,728 Number of extensions: 120869660 Number of successful extensions: 12604702 Number of sequences better than 10.0: 1390 Length of query: 1067 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1043 Effective length of database: 97,308,875,965 Effective search space: 101493157631495 Effective search space used: 101493157631495 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.26 |
Homology vs Protein |
Query= Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Contig-U09821-1Q.Seq.d (1067 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AM432700_1(AM432700|pid:none) Vitis vinifera contig VV78X264077.... 121 4e-26 AL161491_13(AL161491|pid:none) Arabidopsis thaliana DNA chromoso... 120 6e-26 EU962054_1(EU962054|pid:none) Zea mays clone 239915 hydrolase, h... 112 3e-23 AK160156_1(AK160156|pid:none) Mus musculus 10 day old male pancr... 111 5e-23 BC127546_1(BC127546|pid:none) Rattus norvegicus chitinase domain... 111 5e-23 (Q922Q9) RecName: Full=Chitinase domain-containing protein 1; Fl... 110 6e-23 BT033410_1(BT033410|pid:none) Zea mays full-length cDNA clone ZM... 110 1e-22 AK297743_1(AK297743|pid:none) Homo sapiens cDNA FLJ55809 complet... 110 1e-22 (Q5RFF6) RecName: Full=Chitinase domain-containing protein 1; Fl... 110 1e-22 AK075413_1(AK075413|pid:none) Homo sapiens cDNA PSEC0104 fis, cl... 110 1e-22 (Q9BWS9) RecName: Full=Chitinase domain-containing protein 1; Al... 110 1e-22 AK301245_1(AK301245|pid:none) Homo sapiens cDNA FLJ56160 complet... 109 2e-22 BC118449_1(BC118449|pid:none) Bos taurus chitinase domain contai... 108 4e-22 (Q5EAB4) RecName: Full=Chitinase domain-containing protein 1; Fl... 108 4e-22 AK027711_1(AK027711|pid:none) Homo sapiens cDNA FLJ14805 fis, cl... 107 7e-22 AK106731_1(AK106731|pid:none) Oryza sativa Japonica Group cDNA c... 106 1e-21 EF581383_1(EF581383|pid:none) Ovis aries stabilin-1 interacting ... 104 6e-21 AY037151_1(AY037151|pid:none) Homo sapiens hypothetical protein ... 103 8e-21 EF085057_1(EF085057|pid:none) Picea sitchensis clone WS02910_I05... 103 1e-20 EU960088_1(EU960088|pid:none) Zea mays clone 221632 unknown mRNA. 98 6e-19 AY061198_1(AY061198|pid:none) Drosophila melanogaster LD15505 fu... 96 3e-18 AY811382_1(AY811382|pid:none) Schistosoma japonicum SJCHGC06685 ... 91 7e-17 AY128359_1(AY128359|pid:none) Arabidopsis thaliana unknown prote... 84 8e-15 T29565(T29565)hypothetical protein C44C1.2 - Caenorhabditis eleg... 82 3e-14 DQ079295_1(DQ079295|pid:none) Drosophila mojavensis strain 15081... 78 6e-13 DQ079287_1(DQ079287|pid:none) Drosophila arizonae strain 15081-1... 77 8e-13 DQ079290_1(DQ079290|pid:none) Drosophila mojavensis strain 15081... 77 8e-13 DQ079289_1(DQ079289|pid:none) Drosophila arizonae strain 15081-1... 77 8e-13 DQ079291_1(DQ079291|pid:none) Drosophila mojavensis strain 15081... 77 8e-13 DQ079286_1(DQ079286|pid:none) Drosophila arizonae strain 15081-1... 77 1e-12 DQ079284_1(DQ079284|pid:none) Drosophila arizonae strain 15081-1... 75 3e-12 CP001098_2164(CP001098|pid:none) Halothermothrix orenii H 168, c... 75 5e-12 AY325242_1(AY325242|pid:none) Rattus norvegicus Cc1-9 mRNA, comp... 72 3e-11 AB173491_1(AB173491|pid:none) Macaca fascicularis brain cDNA clo... 65 5e-09 AY811211_1(AY811211|pid:none) Schistosoma japonicum SJCHGC07195 ... 62 3e-08 CP001098_2150(CP001098|pid:none) Halothermothrix orenii H 168, c... 60 1e-07 CP000853_1520(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 60 1e-07 CP001337_1346(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 55 4e-06 CP000909_1654(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 54 1e-05 CP000804_230(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 52 3e-05 CP000448_1810(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 52 5e-05 AP009049_908(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 51 8e-05 AE001437_1536(AE001437|pid:none) Clostridium acetobutylicum ATCC... 50 1e-04 AP008955_1068(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 50 1e-04 CP001275_1637(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 49 2e-04 CP000813_508(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 49 2e-04 CP000930_1845(CP000930|pid:none) Heliobacterium modesticaldum Ic... 49 3e-04 CP000382_618(CP000382|pid:none) Clostridium novyi NT, complete g... 49 4e-04 CP000481_422(CP000481|pid:none) Acidothermus cellulolyticus 11B ... 47 0.001 CP000348_1439(CP000348|pid:none) Leptospira borgpetersenii serov... 47 0.001 CP000777_1747(CP000777|pid:none) Leptospira biflexa serovar Pato... 47 0.001 AE016823_1672(AE016823|pid:none) Leptospira interrogans serovar ... 45 0.003 AE010300_2207(AE010300|pid:none) Leptospira interrogans serovar ... 45 0.003 BA000004_2292(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 44 0.007 (O31682) RecName: Full=Putative glycosylase ykvQ; EC=3.... 43 0.016 AP008981_1842(AP008981|pid:none) Orientia tsutsugamushi str. Ike... 43 0.016 AM420293_3830(AM420293|pid:none) Saccharopolyspora erythraea NRR... 43 0.021 AE013599_3311(AE013599|pid:none) Drosophila melanogaster chromos... 41 0.062 AE016823_2946(AE016823|pid:none) Leptospira interrogans serovar ... 40 0.11 CP000350_725(CP000350|pid:none) Leptospira borgpetersenii serova... 40 0.14 CP000348_2018(CP000348|pid:none) Leptospira borgpetersenii serov... 40 0.14 CP000560_17(CP000560|pid:none) Bacillus amyloliquefaciens FZB42,... 40 0.18 AE008923_3026(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 40 0.18 AP008229_1685(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 39 0.24 AE008691_219(AE008691|pid:none) Thermoanaerobacter tengcongensis... 39 0.24 AY069744_1(AY069744|pid:none) Drosophila melanogaster LP07267 fu... 39 0.31 CP000473_791(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 39 0.31 AX930154_1(AX930154|pid:none) Sequence 110 from Patent WO0308714... 39 0.31 AP008230_133(AP008230|pid:none) Desulfitobacterium hafniense Y51... 39 0.31 AE013599_3312(AE013599|pid:none) Drosophila melanogaster chromos... 39 0.31 AP006627_3104(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 39 0.31 AP006840_537(AP006840|pid:none) Symbiobacterium thermophilum IAM... 39 0.40 CP000941_1818(CP000941|pid:none) Xylella fastidiosa M12, complet... 38 0.53 CP001011_1868(CP001011|pid:none) Xylella fastidiosa M23, complet... 38 0.53 CP000485_3072(CP000485|pid:none) Bacillus thuringiensis str. Al ... 38 0.53 AE009442_1751(AE009442|pid:none) Xylella fastidiosa Temecula1, c... 38 0.53 CP001407_3531(CP001407|pid:none) Bacillus cereus 03BB102, comple... 38 0.53 CP000903_3200(CP000903|pid:none) Bacillus weihenstephanensis KBA... 38 0.69 A53918(A53918) chitinase (EC 3.2.1.14) precursor - braconid wasp... 38 0.69 AE010300_4282(AE010300|pid:none) Leptospira interrogans serovar ... 37 0.90 CP000568_1779(CP000568|pid:none) Clostridium thermocellum ATCC 2... 37 0.90 CP000764_2129(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 37 0.90 CP000348_121(CP000348|pid:none) Leptospira borgpetersenii serova... 37 0.90 AE016823_3332(AE016823|pid:none) Leptospira interrogans serovar ... 37 0.90 EU008333_1(EU008333|pid:none) Bacillus megaterium strain QM B155... 37 1.2 CP000001_3280(CP000001|pid:none) Bacillus cereus E33L, complete ... 37 1.2 BA000026_433(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 37 1.2 AE016877_3430(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 37 1.2 AP006840_1982(AP006840|pid:none) Symbiobacterium thermophilum IA... 37 1.2 CP001176_3564(CP001176|pid:none) Bacillus cereus B4264, complete... 37 1.2 AE017194_3596(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 37 1.2 AY325895_1(AY325895|pid:none) Tenebrio molitor chitinase precurs... 37 1.5 AL009126_587(AL009126|pid:none) Bacillus subtilis subsp. subtili... 37 1.5 AE016879_3359(AE016879|pid:none) Bacillus anthracis str. Ames, c... 37 1.5 CP001472_551(CP001472|pid:none) Acidobacterium capsulatum ATCC 5... 36 2.0 AE003849_845(AE003849|pid:none) Xylella fastidiosa 9a5c, complet... 36 2.0 CP000557_14(CP000557|pid:none) Geobacillus thermodenitrificans N... 36 2.6 CP000968_717(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 36 2.6 (O05495) RecName: Full=Putative sporulation-specific glycosylase... 36 2.6 AL034558_11(AL034558|pid:none) Plasmodium falciparum MAL3P2, com... 36 2.6 CP000853_400(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ... 36 2.6 FJ589787_1(FJ589787|pid:none) Pyrus pyrifolia class V chitinase ... 35 3.4 AL844509_312(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.5 CP001348_1081(CP001348|pid:none) Clostridium cellulolyticum H10,... 35 4.5 BX649607_62(BX649607|pid:none) Aspergillus fumigatus BAC pilot p... 35 5.8 AP009049_379(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 35 5.8 CP000057_693(CP000057|pid:none) Haemophilus influenzae 86-028NP,... 34 7.6 BA000043_2077(BA000043|pid:none) Geobacillus kaustophilus HTA426... 34 9.9 CP001173_1270(CP001173|pid:none) Helicobacter pylori G27, comple... 34 9.9
>AM432700_1(AM432700|pid:none) Vitis vinifera contig VV78X264077.5, whole genome shotgun sequence. Length = 516
Score = 121 bits (304), Expect = 4e-26 Identities = 79/199 (39%), Positives = 116/199 (58%), Gaps = 19/199 (9%) Frame = +3
Query: 465 FLISLSEKLHSI--------GKEIILVIYPFR-QKGQETGFGAKDFELLSNHIDGVSLMT 617 F+ L + LHS+ G ++I VI P R +K QE FG D LS+++DG SLMT Sbjct: 315 FIKQLGQALHSVSSEKNGKQGLQLIYVIGPPRSEKLQEHDFGPADLRSLSDYVDGFSLMT 374
Query: 618 YDF-GPSG-GMNAPKVWVEDNLKFLLPN---GENKNSKKIFMGIPFYG-----YKIGEND 767 YDF GP G NAP W+ L+ LL + + ++KI +GI FYG K Sbjct: 375 YDFSGPHNPGPNAPLKWIHSTLQLLLGSVGKSDQSLARKILLGINFYGNDFALXKGTAGG 434
Query: 768 QSDAIVGSEFISVLKQNKSKKLKFDQNTHEHIFTYKNKKNQQVSMTYPSLLFIEDRIQLA 947 AI G +++S+L ++K L++++N+ EH+F Y + + + ++ YPSL+ I R++ A Sbjct: 435 GGGAITGRDYLSLLDKHKPV-LQWEKNSGEHLFFYSDDHHAKHAVFYPSLMSIFLRLEEA 493
Query: 948 NKYKVSISIWEIGQGLDYF 1004 + V ISIWEIGQGLDYF Sbjct: 494 RSWGVGISIWEIGQGLDYF 512
Score = 70.5 bits (171), Expect = 1e-10 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 21/110 (19%) Frame = +2
Query: 134 VKQRGLVRENVSAKQIINNYNKYFKNVDIKNFEQGNTLVYITPW---------------- 265 V Q+GLV+ +V+ ++I+ +K KN+ +++ L YITPW Sbjct: 74 VHQQGLVKADVNYQEILTENSKVSKNMSQRHYTYP-VLAYITPWVIFGCEGNIDEKFXWL 132
Query: 266 -----NGKGYDVATKWAKKFTHISPVWHQVKFENNKVMIEGDHNIDKKWM 400 N KGYD+A + KFTH+SP+W+ ++ + +++EG HN D W+ Sbjct: 133 AKLCRNNKGYDLAKSFNSKFTHLSPIWYDLRSQGTNLVLEGRHNADIGWI 182
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 1,409,939,335 Number of extensions: 27364130 Number of successful extensions: 69225 Number of sequences better than 10.0: 109 Number of HSP's gapped: 69062 Number of HSP's successfully gapped: 131 Length of query: 355 Length of database: 1,040,966,779 Length adjustment: 129 Effective length of query: 226 Effective length of database: 627,614,014 Effective search space: 141840767164 Effective search space used: 141840767164 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |