Contig-U09821-1
Contig ID Contig-U09821-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Contig-U09821-1Q.Seq.d
CACAATGAAAAAACAATTAATTCTTTGTTTATTTTTATTATCATTATTAA
TGATATCAACATTTGTAACAAATGCTGATGATAATGATAATGAAATTTAT
GAGGAAGAAGAAGATTTTACAACCAATAGAGATGTTAAACAAAGAGGATT
AGTTAGAGAGAATGTTTCAGCAAAACAAATTATAAATAATTATAATAAAT
ATTTCAAAAATGTAGATATTAAAAATTTTGAACAAGGTAATACATTGGTT
TATATAACACCGTGGAATGGTAAAGGATATGATGTTGCTACTAAATGGGC
TAAAAAATTCACACATATTTCACCAGTTTGGCATCAAGTTAAATTTGAAA
ATAATAAAGTAATGATTGAAGGTGATCATAATATTGACAAGAAATGGATG
GANA----------GATTAGTGATTGAAGGTATAGTTCATATAAATAAAC
AATTAAGAGATCCATTTTTAATTTCACTCTCTGAAAAATTACATTCAATT
GGAAAAGAAATAATTTTAGTTATTTATCCATTCAGACAAAAAGGACAAGA
AACTGGATTTGGAGCAAAAGATTTTGAATTATTATCAAATCATATTGATG
GAGTTTCATTAATGACATATGATTTTGGACCAAGTGGAGGTATGAATGCA
CCAAAAGTTTGGGTTGAAGATAATTTAAAATTTTTATTACCAAATGGAGA
AAATAAAAATTCTAAAAAGATTTTCATGGGTATTCCATTCTATGGATATA
AAATTGGTGAAAATGACCAATCAGATGCAATAGTTGGTTCAGAATTCATT
TCAGTTTTAAAACAAAATAAATCAAAGAAATTAAAATTTGATCAAAATAC
TCATGAACATATTTTTACATATAAAAATAAAAAGAATCAACAAGTTTCAA
TGACATATCCATCATTATTATTTATTGAAGATCGTATTCAATTAGCAAAT
AAATATAAAGTTTCCATTTCAATTTGGGAAATTGGTCAAGGTTTAGATTA
TTTTAGGATTTATTATAAAAAATAATAATAAAAATAAAAAAAATAAAAAA
CATATATTTTAAAAAAA

Gap gap included
Contig length 1057
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4018539
End point 4017480
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09821
List of clone(s)

est1=VSJ672F,1,405
est2=VSJ672Z,406,1059
Translated Amino Acid sequence
TMKKQLILCLFLLSLLMISTFVTNADDNDNEIYEEEEDFTTNRDVKQRGLVRENVSAKQI
INNYNKYFKNVDIKNFEQGNTLVYITPWNGKGYDVATKWAKKFTHISPVWHQVKFENNKV
MIEGDHNIDKKWMX---

---LVIEGIVHINKQLRDPFLISLSEKLHSIGKEIILVIYPFRQKGQETGFGAKDFELLS
NHIDGVSLMTYDFGPSGGMNAPKVWVEDNLKFLLPNGENKNSKKIFMGIPFYGYKIGEND
QSDAIVGSEFISVLKQNKSKKLKFDQNTHEHIFTYKNKKNQQVSMTYPSLLFIEDRIQLA
NKYKVSISIWEIGQGLDYFRIYYKK***k*kk*ktyilkk


Translated Amino Acid sequence (All Frames)
Frame A:
hnektinslfifiiiindinicnkc******nl*grrrfynq*rc*tkris*recfsktn
yk*l**ifqkcry*kf*tr*yiglyntvew*ri*ccy*mg*kihtyftslass*i*k**s
nd*r*s*y*qemdg---

---d**lkv*fi*inn*eihf*fhslknyiqlekk*f*lfihsdkkdkkldleqkilnyy
qiilmefh**hmildqvev*mhqkfglkii*nfyyqmekikilkrfswvfhsmdiklvkm
tnqmq*lvqnsfqf*nkinqrn*nlikilmniflhikikrinkfq*hihhyyllkivfn*
qinikfpfqfgklvkv*iilgfiiknnnknkknkkhif*k

Frame B:
TMKKQLILCLFLLSLLMISTFVTNADDNDNEIYEEEEDFTTNRDVKQRGLVRENVSAKQI
INNYNKYFKNVDIKNFEQGNTLVYITPWNGKGYDVATKWAKKFTHISPVWHQVKFENNKV
MIEGDHNIDKKWMX---

---isd*ryssyk*tikrsifnftl*kitfnwkrnnfsylsiqtkrtrnwiwskrf*iii
ksy*wsfindi*fwtkwryectkslg*r*fkifitkwrk*kf*kdfhgysilwi*nw*k*
pircnswfrihfsfktk*ikeiki*skys*tyfyi*k*kestsfndisiiiiy*rsysis
k*i*sfhfnlgnwsrfrlf*dll*kiiikikkikniyfkk

Frame C:
q*knn*ffvyfyyhy**yqhl*qmlmimimkfmrkkkilqpiemlnked*lermfqqnkl
*iiiiniskm*ilkilnkvihwfi*hrgmvkdmmlllnglknshifhqfgiklnlkiik*
*lkviiiltrngwx---

---LVIEGIVHINKQLRDPFLISLSEKLHSIGKEIILVIYPFRQKGQETGFGAKDFELLS
NHIDGVSLMTYDFGPSGGMNAPKVWVEDNLKFLLPNGENKNSKKIFMGIPFYGYKIGEND
QSDAIVGSEFISVLKQNKSKKLKFDQNTHEHIFTYKNKKNQQVSMTYPSLLFIEDRIQLA
NKYKVSISIWEIGQGLDYFRIYYKK***k*kk*ktyilkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09821-1 (Contig-U09821-1Q)
/CSM_Contig/Contig-U09821-1Q.Seq.d
(1067 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Conti... 1945 0.0
Contig-U12361-1 (Contig-U12361-1Q) /CSM_Contig/Conti... 52 1e-06
Contig-U04626-1 (Contig-U04626-1Q) /CSM_Contig/Conti... 46 8e-05
Contig-U05274-1 (Contig-U05274-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U14359-1 (Contig-U14359-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12920-1 (Contig-U12920-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11685-1 (Contig-U11685-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U08936-1 (Contig-U08936-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U01716-1 (Contig-U01716-1Q) /CSM_Contig/Conti... 42 0.001

>Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Contig-U09821-1Q.Seq.d
Length = 1067

Score = 1945 bits (981), Expect = 0.0
Identities = 1014/1014 (100%)
Strand = Plus / Plus


Query: 1 cacaatgaaaaaacaattaattctttgtttatttttattatcattattaatgatatcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacaatgaaaaaacaattaattctttgtttatttttattatcattattaatgatatcaac 60


Query: 61 atttgtaacaaatgctgatgataatgataatgaaatttatgaggaagaagaagattttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttgtaacaaatgctgatgataatgataatgaaatttatgaggaagaagaagattttac 120


Query: 121 aaccaatagagatgttaaacaaagaggattagttagagagaatgtttcagcaaaacaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaccaatagagatgttaaacaaagaggattagttagagagaatgtttcagcaaaacaaat 180


Query: 181 tataaataattataataaatatttcaaaaatgtagatattaaaaattttgaacaaggtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tataaataattataataaatatttcaaaaatgtagatattaaaaattttgaacaaggtaa 240


Query: 241 tacattggtttatataacaccgtggaatggtaaaggatatgatgttgctactaaatgggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tacattggtttatataacaccgtggaatggtaaaggatatgatgttgctactaaatgggc 300


Query: 301 taaaaaattcacacatatttcaccagtttggcatcaagttaaatttgaaaataataaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaaaaattcacacatatttcaccagtttggcatcaagttaaatttgaaaataataaagt 360


Query: 361 aatgattgaaggtgatcataatattgacaagaaatggatgganannnnnnnnnngattag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgattgaaggtgatcataatattgacaagaaatggatgganannnnnnnnnngattag 420


Query: 421 tgattgaaggtatagttcatataaataaacaattaagagatccatttttaatttcactct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgattgaaggtatagttcatataaataaacaattaagagatccatttttaatttcactct 480


Query: 481 ctgaaaaattacattcaattggaaaagaaataattttagttatttatccattcagacaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctgaaaaattacattcaattggaaaagaaataattttagttatttatccattcagacaaa 540


Query: 541 aaggacaagaaactggatttggagcaaaagattttgaattattatcaaatcatattgatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaggacaagaaactggatttggagcaaaagattttgaattattatcaaatcatattgatg 600


Query: 601 gagtttcattaatgacatatgattttggaccaagtggaggtatgaatgcaccaaaagttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gagtttcattaatgacatatgattttggaccaagtggaggtatgaatgcaccaaaagttt 660


Query: 661 gggttgaagataatttaaaatttttattaccaaatggagaaaataaaaattctaaaaaga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gggttgaagataatttaaaatttttattaccaaatggagaaaataaaaattctaaaaaga 720


Query: 721 ttttcatgggtattccattctatggatataaaattggtgaaaatgaccaatcagatgcaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttttcatgggtattccattctatggatataaaattggtgaaaatgaccaatcagatgcaa 780


Query: 781 tagttggttcagaattcatttcagttttaaaacaaaataaatcaaagaaattaaaatttg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tagttggttcagaattcatttcagttttaaaacaaaataaatcaaagaaattaaaatttg 840


Query: 841 atcaaaatactcatgaacatatttttacatataaaaataaaaagaatcaacaagtttcaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 atcaaaatactcatgaacatatttttacatataaaaataaaaagaatcaacaagtttcaa 900


Query: 901 tgacatatccatcattattatttattgaagatcgtattcaattagcaaataaatataaag 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tgacatatccatcattattatttattgaagatcgtattcaattagcaaataaatataaag 960


Query: 961 tttccatttcaatttgggaaattggtcaaggtttagattattttaggatttatt 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tttccatttcaatttgggaaattggtcaaggtttagattattttaggatttatt 1014


>Contig-U12361-1 (Contig-U12361-1Q) /CSM_Contig/Contig-U12361-1Q.Seq.d
Length = 1675

Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus


Query: 182 ataaataattataataaatatttcaaaaat 211
||||||||||||||||||||||| ||||||
Sbjct: 189 ataaataattataataaatattttaaaaat 218


>Contig-U04626-1 (Contig-U04626-1Q) /CSM_Contig/Contig-U04626-1Q.Seq.d
Length = 773

Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus


Query: 29 ttatttttattatcattattaat 51
|||||||||||||||||||||||
Sbjct: 734 ttatttttattatcattattaat 712


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,181
Number of Sequences: 6905
Number of extensions: 39181
Number of successful extensions: 6348
Number of sequences better than 10.0: 853
length of query: 1067
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1051
effective length of database: 5,564,391
effective search space: 5848174941
effective search space used: 5848174941
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Contig-U09821-1Q.Seq.d
(1067 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU270295) Dictyostelium discoideum vegetative cDNA clone:VS... 1187 0.0 1
(AU270294) Dictyostelium discoideum vegetative cDNA clone:VS... 347 0.0 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 46 1e-10 16
(EL488883) CHUS4088.b1_O14.ab1 CHU(LMS) puzzle sunflower Hel... 70 2e-07 1
(EL488719) CHUS3939.b1_F01.ab1 CHU(LMS) puzzle sunflower Hel... 70 2e-07 1
(AJ437721) Helianthus annuus EST clone HaDplR203C06. 70 2e-07 1
(AJ437702) Helianthus annuus EST clone HaDplR203A05. 70 2e-07 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 40 3e-07 17
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 40 7e-07 16
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 36 2e-06 10
(AL844507) Plasmodium falciparum chromosome 8. 40 4e-06 14
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 6e-06 13
(CP000312) Clostridium perfringens SM101, complete genome. 38 1e-05 19
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 2e-05 15
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 3e-05 16
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 36 3e-05 16
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 36 4e-05 11
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 5e-05 13
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 7e-05 14
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 42 9e-05 13
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 40 1e-04 12
(AE017263) Mesoplasma florum L1 complete genome. 36 1e-04 20
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 46 1e-04 10
(AC210132) Populus trichocarpa clone POP011-D09, complete se... 42 2e-04 10
(AL031745) Plasmodium falciparum DNA from MAL1P2. 36 2e-04 18
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 2e-04 14
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 42 2e-04 11
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 3e-04 15
(AC225528) Medicago truncatula clone mth2-116k19, WORKING DR... 44 3e-04 10
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 36 5e-04 14
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 36 7e-04 15
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 40 7e-04 13
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 8e-04 16
(AE017308) Mycoplasma mobile 163K complete genome. 32 8e-04 18
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 8e-04 15
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.001 17
(Z98551) Plasmodium falciparum MAL3P6. 42 0.001 11
(AC176976) Strongylocentrotus purpuratus clone R3-34P20, WOR... 42 0.001 5
(DD010735) Diagnosis of known genetic Parameters within the ... 40 0.001 8
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 0.002 16
(AC208999) Populus trichocarpa clone POP021-B12, complete se... 40 0.002 9
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 44 0.002 13
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 0.002 21
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 38 0.002 13
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.002 15
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 36 0.002 20
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.003 15
(AC181971) Medicago truncatula clone mth2-13b13, WORKING DRA... 44 0.003 6
(AF494278) Chaetosphaeridium globosum chloroplast, complete ... 34 0.003 9
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 36 0.003 12
(BP647543) Arabidopsis thaliana cDNA clone:RAFL19-75-M23, 3'... 56 0.003 1
(FG161743) AGN_RNC018xp10r1.ab1 AGN_RNC Nicotiana tabacum cD... 56 0.003 1
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 36 0.003 11
(CR385032) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.003 8
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 0.003 8
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 0.003 15
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 0.004 15
(AC225493) Medicago truncatula clone mth2-46d11, WORKING DRA... 44 0.004 9
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 34 0.004 14
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.004 14
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 46 0.004 14
(AL008970) Plasmodium falciparum MAL3P4. 36 0.004 11
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 36 0.005 11
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 38 0.005 6
(BX470098) Zebrafish DNA sequence from clone DKEY-148D16 in ... 46 0.005 9
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 0.005 16
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 36 0.006 21
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 34 0.006 9
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.007 13
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 0.007 10
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 0.007 16
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 0.007 11
(AC116987) Dictyostelium discoideum chromosome 2 map 3527441... 36 0.007 7
(AL844509) Plasmodium falciparum chromosome 13. 42 0.008 8
(AL035475) Plasmodium falciparum MAL4P2. 32 0.009 13
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.009 12
(EK295790) 1095462346721 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.010 3
(DQ832718) Phytophthora ramorum mitochondrion, complete genome. 32 0.010 9
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr... 32 0.010 9
(AC168468) Strongylocentrotus purpuratus clone R3-35C6, WORK... 38 0.011 7
(BT002097) Arabidopsis thaliana unknown protein (At4g01040) ... 54 0.011 1
(AY128359) Arabidopsis thaliana unknown protein (At4g01040) ... 54 0.011 1
(AL161491) Arabidopsis thaliana DNA chromosome 4, contig fra... 54 0.011 1
(AF007269) Arabidopsis thaliana BAC IG002N01. 54 0.011 1
(CU695322) Brassica rapa subsp. pekinensis clone KBrH108F05,... 54 0.011 1
(BX828310) Arabidopsis thaliana Full-length cDNA Complete se... 54 0.011 1
(DU854264) 54237 Tomato HindIII BAC Library Solanum lycopers... 54 0.011 1
(DU691930) Bst024460 lambda03 Boechera stricta genomic clone... 54 0.011 1
(AL091386) Arabidopsis thaliana genome survey sequence SP6 e... 54 0.011 1
(DU122702) KBrH108F05F Brassica rapa BAC library KBrH Brassi... 54 0.011 1
(EV114966) 0120278 Brassica napus Root library Brassica napu... 54 0.011 1
(EV114380) 0119692 Brassica napus Root library Brassica napu... 54 0.011 1
(EV114296) 0119608 Brassica napus Root library Brassica napu... 54 0.011 1
(ES107908) 134369_2306_3245 Arabidopsis ovule high throughpu... 54 0.011 1
(EL121718) EB3RODY01CXD7M 8-day Arabidopsis seedlings, aeria... 54 0.011 1
(EE552100) BNQA_UP_068_B06_30MAY2005_046 Brassica napus BNQA... 54 0.011 1
(AV782468) Arabidopsis thaliana cDNA clone:RAFL04-17-K09, 3'... 54 0.011 1
(AJ766868) Gerbera hybrid cv. 'Terra Nero' EST, clone G00009... 54 0.011 1
(AJ760769) Gerbera hybrid cv. 'Terra Regina' EST, clone G000... 54 0.011 1
(CD816124) BN15.028K01F020326 BN15 Brassica napus cDNA clone... 54 0.011 1

>(AU270295) Dictyostelium discoideum vegetative cDNA clone:VSJ672, 3'
end single read.
Length = 654

Score = 1187 bits (599), Expect = 0.0
Identities = 599/599 (100%)
Strand = Plus / Plus


Query: 416 attagtgattgaaggtatagttcatataaataaacaattaagagatccatttttaatttc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 attagtgattgaaggtatagttcatataaataaacaattaagagatccatttttaatttc 61


Query: 476 actctctgaaaaattacattcaattggaaaagaaataattttagttatttatccattcag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 actctctgaaaaattacattcaattggaaaagaaataattttagttatttatccattcag 121


Query: 536 acaaaaaggacaagaaactggatttggagcaaaagattttgaattattatcaaatcatat 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 acaaaaaggacaagaaactggatttggagcaaaagattttgaattattatcaaatcatat 181


Query: 596 tgatggagtttcattaatgacatatgattttggaccaagtggaggtatgaatgcaccaaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgatggagtttcattaatgacatatgattttggaccaagtggaggtatgaatgcaccaaa 241


Query: 656 agtttgggttgaagataatttaaaatttttattaccaaatggagaaaataaaaattctaa 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agtttgggttgaagataatttaaaatttttattaccaaatggagaaaataaaaattctaa 301


Query: 716 aaagattttcatgggtattccattctatggatataaaattggtgaaaatgaccaatcaga 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaagattttcatgggtattccattctatggatataaaattggtgaaaatgaccaatcaga 361


Query: 776 tgcaatagttggttcagaattcatttcagttttaaaacaaaataaatcaaagaaattaaa 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgcaatagttggttcagaattcatttcagttttaaaacaaaataaatcaaagaaattaaa 421


Query: 836 atttgatcaaaatactcatgaacatatttttacatataaaaataaaaagaatcaacaagt 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atttgatcaaaatactcatgaacatatttttacatataaaaataaaaagaatcaacaagt 481


Query: 896 ttcaatgacatatccatcattattatttattgaagatcgtattcaattagcaaataaata 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttcaatgacatatccatcattattatttattgaagatcgtattcaattagcaaataaata 541


Query: 956 taaagtttccatttcaatttgggaaattggtcaaggtttagattattttaggatttatt 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taaagtttccatttcaatttgggaaattggtcaaggtttagattattttaggatttatt 600

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,607,094,728
Number of extensions: 120869660
Number of successful extensions: 12604702
Number of sequences better than 10.0: 1390
Length of query: 1067
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1043
Effective length of database: 97,308,875,965
Effective search space: 101493157631495
Effective search space used: 101493157631495
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Contig-U09821-1Q.Seq.d
(1067 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM432700_1(AM432700|pid:none) Vitis vinifera contig VV78X264077.... 121 4e-26
AL161491_13(AL161491|pid:none) Arabidopsis thaliana DNA chromoso... 120 6e-26
EU962054_1(EU962054|pid:none) Zea mays clone 239915 hydrolase, h... 112 3e-23
AK160156_1(AK160156|pid:none) Mus musculus 10 day old male pancr... 111 5e-23
BC127546_1(BC127546|pid:none) Rattus norvegicus chitinase domain... 111 5e-23
(Q922Q9) RecName: Full=Chitinase domain-containing protein 1; Fl... 110 6e-23
BT033410_1(BT033410|pid:none) Zea mays full-length cDNA clone ZM... 110 1e-22
AK297743_1(AK297743|pid:none) Homo sapiens cDNA FLJ55809 complet... 110 1e-22
(Q5RFF6) RecName: Full=Chitinase domain-containing protein 1; Fl... 110 1e-22
AK075413_1(AK075413|pid:none) Homo sapiens cDNA PSEC0104 fis, cl... 110 1e-22
(Q9BWS9) RecName: Full=Chitinase domain-containing protein 1; Al... 110 1e-22
AK301245_1(AK301245|pid:none) Homo sapiens cDNA FLJ56160 complet... 109 2e-22
BC118449_1(BC118449|pid:none) Bos taurus chitinase domain contai... 108 4e-22
(Q5EAB4) RecName: Full=Chitinase domain-containing protein 1; Fl... 108 4e-22
AK027711_1(AK027711|pid:none) Homo sapiens cDNA FLJ14805 fis, cl... 107 7e-22
AK106731_1(AK106731|pid:none) Oryza sativa Japonica Group cDNA c... 106 1e-21
EF581383_1(EF581383|pid:none) Ovis aries stabilin-1 interacting ... 104 6e-21
AY037151_1(AY037151|pid:none) Homo sapiens hypothetical protein ... 103 8e-21
EF085057_1(EF085057|pid:none) Picea sitchensis clone WS02910_I05... 103 1e-20
EU960088_1(EU960088|pid:none) Zea mays clone 221632 unknown mRNA. 98 6e-19
AY061198_1(AY061198|pid:none) Drosophila melanogaster LD15505 fu... 96 3e-18
AY811382_1(AY811382|pid:none) Schistosoma japonicum SJCHGC06685 ... 91 7e-17
AY128359_1(AY128359|pid:none) Arabidopsis thaliana unknown prote... 84 8e-15
T29565(T29565)hypothetical protein C44C1.2 - Caenorhabditis eleg... 82 3e-14
DQ079295_1(DQ079295|pid:none) Drosophila mojavensis strain 15081... 78 6e-13
DQ079287_1(DQ079287|pid:none) Drosophila arizonae strain 15081-1... 77 8e-13
DQ079290_1(DQ079290|pid:none) Drosophila mojavensis strain 15081... 77 8e-13
DQ079289_1(DQ079289|pid:none) Drosophila arizonae strain 15081-1... 77 8e-13
DQ079291_1(DQ079291|pid:none) Drosophila mojavensis strain 15081... 77 8e-13
DQ079286_1(DQ079286|pid:none) Drosophila arizonae strain 15081-1... 77 1e-12
DQ079284_1(DQ079284|pid:none) Drosophila arizonae strain 15081-1... 75 3e-12
CP001098_2164(CP001098|pid:none) Halothermothrix orenii H 168, c... 75 5e-12
AY325242_1(AY325242|pid:none) Rattus norvegicus Cc1-9 mRNA, comp... 72 3e-11
AB173491_1(AB173491|pid:none) Macaca fascicularis brain cDNA clo... 65 5e-09
AY811211_1(AY811211|pid:none) Schistosoma japonicum SJCHGC07195 ... 62 3e-08
CP001098_2150(CP001098|pid:none) Halothermothrix orenii H 168, c... 60 1e-07
CP000853_1520(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 60 1e-07
CP001337_1346(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 55 4e-06
CP000909_1654(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 54 1e-05
CP000804_230(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 52 3e-05
CP000448_1810(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 52 5e-05
AP009049_908(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 51 8e-05
AE001437_1536(AE001437|pid:none) Clostridium acetobutylicum ATCC... 50 1e-04
AP008955_1068(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 50 1e-04
CP001275_1637(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 49 2e-04
CP000813_508(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 49 2e-04
CP000930_1845(CP000930|pid:none) Heliobacterium modesticaldum Ic... 49 3e-04
CP000382_618(CP000382|pid:none) Clostridium novyi NT, complete g... 49 4e-04
CP000481_422(CP000481|pid:none) Acidothermus cellulolyticus 11B ... 47 0.001
CP000348_1439(CP000348|pid:none) Leptospira borgpetersenii serov... 47 0.001
CP000777_1747(CP000777|pid:none) Leptospira biflexa serovar Pato... 47 0.001
AE016823_1672(AE016823|pid:none) Leptospira interrogans serovar ... 45 0.003
AE010300_2207(AE010300|pid:none) Leptospira interrogans serovar ... 45 0.003
BA000004_2292(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 44 0.007
(O31682) RecName: Full=Putative glycosylase ykvQ; EC=3.... 43 0.016
AP008981_1842(AP008981|pid:none) Orientia tsutsugamushi str. Ike... 43 0.016
AM420293_3830(AM420293|pid:none) Saccharopolyspora erythraea NRR... 43 0.021
AE013599_3311(AE013599|pid:none) Drosophila melanogaster chromos... 41 0.062
AE016823_2946(AE016823|pid:none) Leptospira interrogans serovar ... 40 0.11
CP000350_725(CP000350|pid:none) Leptospira borgpetersenii serova... 40 0.14
CP000348_2018(CP000348|pid:none) Leptospira borgpetersenii serov... 40 0.14
CP000560_17(CP000560|pid:none) Bacillus amyloliquefaciens FZB42,... 40 0.18
AE008923_3026(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 40 0.18
AP008229_1685(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 39 0.24
AE008691_219(AE008691|pid:none) Thermoanaerobacter tengcongensis... 39 0.24
AY069744_1(AY069744|pid:none) Drosophila melanogaster LP07267 fu... 39 0.31
CP000473_791(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 39 0.31
AX930154_1(AX930154|pid:none) Sequence 110 from Patent WO0308714... 39 0.31
AP008230_133(AP008230|pid:none) Desulfitobacterium hafniense Y51... 39 0.31
AE013599_3312(AE013599|pid:none) Drosophila melanogaster chromos... 39 0.31
AP006627_3104(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 39 0.31
AP006840_537(AP006840|pid:none) Symbiobacterium thermophilum IAM... 39 0.40
CP000941_1818(CP000941|pid:none) Xylella fastidiosa M12, complet... 38 0.53
CP001011_1868(CP001011|pid:none) Xylella fastidiosa M23, complet... 38 0.53
CP000485_3072(CP000485|pid:none) Bacillus thuringiensis str. Al ... 38 0.53
AE009442_1751(AE009442|pid:none) Xylella fastidiosa Temecula1, c... 38 0.53
CP001407_3531(CP001407|pid:none) Bacillus cereus 03BB102, comple... 38 0.53
CP000903_3200(CP000903|pid:none) Bacillus weihenstephanensis KBA... 38 0.69
A53918(A53918) chitinase (EC 3.2.1.14) precursor - braconid wasp... 38 0.69
AE010300_4282(AE010300|pid:none) Leptospira interrogans serovar ... 37 0.90
CP000568_1779(CP000568|pid:none) Clostridium thermocellum ATCC 2... 37 0.90
CP000764_2129(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 37 0.90
CP000348_121(CP000348|pid:none) Leptospira borgpetersenii serova... 37 0.90
AE016823_3332(AE016823|pid:none) Leptospira interrogans serovar ... 37 0.90
EU008333_1(EU008333|pid:none) Bacillus megaterium strain QM B155... 37 1.2
CP000001_3280(CP000001|pid:none) Bacillus cereus E33L, complete ... 37 1.2
BA000026_433(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 37 1.2
AE016877_3430(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 37 1.2
AP006840_1982(AP006840|pid:none) Symbiobacterium thermophilum IA... 37 1.2
CP001176_3564(CP001176|pid:none) Bacillus cereus B4264, complete... 37 1.2
AE017194_3596(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 37 1.2
AY325895_1(AY325895|pid:none) Tenebrio molitor chitinase precurs... 37 1.5
AL009126_587(AL009126|pid:none) Bacillus subtilis subsp. subtili... 37 1.5
AE016879_3359(AE016879|pid:none) Bacillus anthracis str. Ames, c... 37 1.5
CP001472_551(CP001472|pid:none) Acidobacterium capsulatum ATCC 5... 36 2.0
AE003849_845(AE003849|pid:none) Xylella fastidiosa 9a5c, complet... 36 2.0
CP000557_14(CP000557|pid:none) Geobacillus thermodenitrificans N... 36 2.6
CP000968_717(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 36 2.6
(O05495) RecName: Full=Putative sporulation-specific glycosylase... 36 2.6
AL034558_11(AL034558|pid:none) Plasmodium falciparum MAL3P2, com... 36 2.6
CP000853_400(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ... 36 2.6
FJ589787_1(FJ589787|pid:none) Pyrus pyrifolia class V chitinase ... 35 3.4
AL844509_312(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.5
CP001348_1081(CP001348|pid:none) Clostridium cellulolyticum H10,... 35 4.5
BX649607_62(BX649607|pid:none) Aspergillus fumigatus BAC pilot p... 35 5.8
AP009049_379(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 35 5.8
CP000057_693(CP000057|pid:none) Haemophilus influenzae 86-028NP,... 34 7.6
BA000043_2077(BA000043|pid:none) Geobacillus kaustophilus HTA426... 34 9.9
CP001173_1270(CP001173|pid:none) Helicobacter pylori G27, comple... 34 9.9

>AM432700_1(AM432700|pid:none) Vitis vinifera contig VV78X264077.5,
whole genome shotgun sequence.
Length = 516

Score = 121 bits (304), Expect = 4e-26
Identities = 79/199 (39%), Positives = 116/199 (58%), Gaps = 19/199 (9%)
Frame = +3

Query: 465 FLISLSEKLHSI--------GKEIILVIYPFR-QKGQETGFGAKDFELLSNHIDGVSLMT 617
F+ L + LHS+ G ++I VI P R +K QE FG D LS+++DG SLMT
Sbjct: 315 FIKQLGQALHSVSSEKNGKQGLQLIYVIGPPRSEKLQEHDFGPADLRSLSDYVDGFSLMT 374

Query: 618 YDF-GPSG-GMNAPKVWVEDNLKFLLPN---GENKNSKKIFMGIPFYG-----YKIGEND 767
YDF GP G NAP W+ L+ LL + + ++KI +GI FYG K
Sbjct: 375 YDFSGPHNPGPNAPLKWIHSTLQLLLGSVGKSDQSLARKILLGINFYGNDFALXKGTAGG 434

Query: 768 QSDAIVGSEFISVLKQNKSKKLKFDQNTHEHIFTYKNKKNQQVSMTYPSLLFIEDRIQLA 947
AI G +++S+L ++K L++++N+ EH+F Y + + + ++ YPSL+ I R++ A
Sbjct: 435 GGGAITGRDYLSLLDKHKPV-LQWEKNSGEHLFFYSDDHHAKHAVFYPSLMSIFLRLEEA 493

Query: 948 NKYKVSISIWEIGQGLDYF 1004
+ V ISIWEIGQGLDYF
Sbjct: 494 RSWGVGISIWEIGQGLDYF 512

Score = 70.5 bits (171), Expect = 1e-10
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 21/110 (19%)
Frame = +2

Query: 134 VKQRGLVRENVSAKQIINNYNKYFKNVDIKNFEQGNTLVYITPW---------------- 265
V Q+GLV+ +V+ ++I+ +K KN+ +++ L YITPW
Sbjct: 74 VHQQGLVKADVNYQEILTENSKVSKNMSQRHYTYP-VLAYITPWVIFGCEGNIDEKFXWL 132

Query: 266 -----NGKGYDVATKWAKKFTHISPVWHQVKFENNKVMIEGDHNIDKKWM 400
N KGYD+A + KFTH+SP+W+ ++ + +++EG HN D W+
Sbjct: 133 AKLCRNNKGYDLAKSFNSKFTHLSPIWYDLRSQGTNLVLEGRHNADIGWI 182

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,409,939,335
Number of extensions: 27364130
Number of successful extensions: 69225
Number of sequences better than 10.0: 109
Number of HSP's gapped: 69062
Number of HSP's successfully gapped: 131
Length of query: 355
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 226
Effective length of database: 627,614,014
Effective search space: 141840767164
Effective search space used: 141840767164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.99 gvh: 0.77 alm: 0.48 top: -0.27 tms: 0.00 mit: 0.36 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: extracellular, including cell wall
20.0 %: cytoplasmic
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: nuclear
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for Contig-U09821-1 is exc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0