Contig-U09813-1
Contig ID Contig-U09813-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09813-1 (Contig-U09813-1Q) /CSM_Contig/Contig-U09813-1Q.Seq.d
GCCCTATTTTGAACATAGGTGTTAAATAGTAATATTAGTAATAGTAACAT
TATAAACATAGAATATATTTTTTTTTTTNCCTTTTTTTTTNCAAAATTTT
TTTTT----------CACCACCACCAATAATAATAATAATAATAATAGTA
GTAATCCTAAAACTCCAAATGGAAAAGAAGGTGGATTACCAGATCTAAAT
AATAACTGCCCAGTTTGCGGTATTTCATTTAAATCTATTGGAAAGGATTG
GCCATCAATTAATAAACATATCGATGAATGTTTAACCTTTAATTTATTGG
ATAAAGAGACATTAGATCCAAAAGCCAAATCAACAACTATTAAATGTCCT
TACAGTGGATGTAAAAAGTCAATGACAACAGTAGAATTTATAAATCATTG
TAATGAAAAGCATTTGCTAGACGATGTTCATAATTATAAGTGTCCTTTAT
GTAATGAAAAGTCACCAAATTTAATTAGCCATCTAAGTAAAACACATATA
AGGGTTCAACAAAAACAAGTTGGTGTTGGTTATTCAACAAGTGTACTTGA
AAATGATTTAAGTGAAGATATTGAATGTCCAATTTGTCTTGAAGAGTTCA
CAAAAGGTCAAAATGTGGCCCGTTTAGAATGTTGGTGCATATTTCATACA
AATTGTATTTCTGAATATTTATTAAAATCAAAGAAATGCCCAGTCCATAA
TTAACTTATTTAAAAAGAAGAACAAAAATA

Gap gap included
Contig length 720
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1630625
End point 1631347
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09813
List of clone(s)

est1=VSI640F,1,106
est2=VSI640Z,107,722
Translated Amino Acid sequence
alf*t*VLNSNISNSNIINIEYIFFFXFFFXKFFF---

---TTTNNNNNNNSSNPKTPNGKEGGLPDLNNNCPVCGISFKSIGKDWPSINKHIDECLT
FNLLDKETLDPKAKSTTIKCPYSGCKKSMTTVEFINHCNEKHLLDDVHNYKCPLCNEKSP
NLISHLSKTHIRVQQKQVGVGYSTSVLENDLSEDIECPICLEEFTKGQNVARLECWCIFH
TNCISEYLLKSKKCPVHN*li*keeqk


Translated Amino Acid sequence (All Frames)
Frame A:
alf*t*VLNSNISNSNIINIEYIFFFXFFFXKFFF---

---hhhq*********s*nskwkrrwitrsk**lpslryfi*iywkglain**tyr*mfn
l*fig*rdirsksqinny*mslqwm*kvndnsriyksl**kafarrcs*l*vsfm**kvt
kfn*psk*ntykgstktswcwlfnkct*k*fk*ry*msnls*rvhkrskcgpfrmlvhis
yklyf*ifikikempsp*ltylkrrtki

Frame B:
pyfehrc*ivilvivtl*t*nifffxpffxqnff---

---TTTNNNNNNNSSNPKTPNGKEGGLPDLNNNCPVCGISFKSIGKDWPSINKHIDECLT
FNLLDKETLDPKAKSTTIKCPYSGCKKSMTTVEFINHCNEKHLLDDVHNYKCPLCNEKSP
NLISHLSKTHIRVQQKQVGVGYSTSVLENDLSEDIECPICLEEFTKGQNVARLECWCIFH
TNCISEYLLKSKKCPVHN*li*keeqk

Frame C:
pilnigvk**y****hykhriyfffxlffxkiff---

---pppiiiiiiivvilklqmekkvdyqi*iitaqfavfhlnllerighqlinismnv*p
liywikrh*iqkpnqqllnvltvdvksq*qq*nl*iivmksic*tmfiiisvlyvmkshq
i*lai*vkhi*gfnknklvlviqqvylkmi*vkilnvqfvlkssqkvkmwpv*nvgayfi
qivflniy*nqrnaqsiinlfkkknkn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09813-1 (Contig-U09813-1Q)
/CSM_Contig/Contig-U09813-1Q.Seq.d
(730 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09813-1 (Contig-U09813-1Q) /CSM_Contig/Conti... 1156 0.0
Contig-U14532-1 (Contig-U14532-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U02975-1 (Contig-U02975-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U14894-1 (Contig-U14894-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U12521-1 (Contig-U12521-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U05743-1 (Contig-U05743-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U14509-1 (Contig-U14509-1Q) /CSM_Contig/Conti... 36 0.051
Contig-U14237-1 (Contig-U14237-1Q) /CSM_Contig/Conti... 36 0.051
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti... 36 0.051

>Contig-U09813-1 (Contig-U09813-1Q) /CSM_Contig/Contig-U09813-1Q.Seq.d
Length = 730

Score = 1156 bits (583), Expect = 0.0
Identities = 583/583 (100%)
Strand = Plus / Plus


Query: 148 gtagtaatcctaaaactccaaatggaaaagaaggtggattaccagatctaaataataact 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gtagtaatcctaaaactccaaatggaaaagaaggtggattaccagatctaaataataact 207


Query: 208 gcccagtttgcggtatttcatttaaatctattggaaaggattggccatcaattaataaac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gcccagtttgcggtatttcatttaaatctattggaaaggattggccatcaattaataaac 267


Query: 268 atatcgatgaatgtttaacctttaatttattggataaagagacattagatccaaaagcca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atatcgatgaatgtttaacctttaatttattggataaagagacattagatccaaaagcca 327


Query: 328 aatcaacaactattaaatgtccttacagtggatgtaaaaagtcaatgacaacagtagaat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatcaacaactattaaatgtccttacagtggatgtaaaaagtcaatgacaacagtagaat 387


Query: 388 ttataaatcattgtaatgaaaagcatttgctagacgatgttcataattataagtgtcctt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttataaatcattgtaatgaaaagcatttgctagacgatgttcataattataagtgtcctt 447


Query: 448 tatgtaatgaaaagtcaccaaatttaattagccatctaagtaaaacacatataagggttc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tatgtaatgaaaagtcaccaaatttaattagccatctaagtaaaacacatataagggttc 507


Query: 508 aacaaaaacaagttggtgttggttattcaacaagtgtacttgaaaatgatttaagtgaag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aacaaaaacaagttggtgttggttattcaacaagtgtacttgaaaatgatttaagtgaag 567


Query: 568 atattgaatgtccaatttgtcttgaagagttcacaaaaggtcaaaatgtggcccgtttag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atattgaatgtccaatttgtcttgaagagttcacaaaaggtcaaaatgtggcccgtttag 627


Query: 628 aatgttggtgcatatttcatacaaattgtatttctgaatatttattaaaatcaaagaaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatgttggtgcatatttcatacaaattgtatttctgaatatttattaaaatcaaagaaat 687


Query: 688 gcccagtccataattaacttatttaaaaagaagaacaaaaata 730
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gcccagtccataattaacttatttaaaaagaagaacaaaaata 730


Score = 133 bits (67), Expect = 3e-31
Identities = 67/67 (100%)
Strand = Plus / Plus


Query: 1 gccctattttgaacataggtgttaaatagtaatattagtaatagtaacattataaacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccctattttgaacataggtgttaaatagtaatattagtaatagtaacattataaacata 60


Query: 61 gaatata 67
|||||||
Sbjct: 61 gaatata 67


>Contig-U14532-1 (Contig-U14532-1Q) /CSM_Contig/Contig-U14532-1Q.Seq.d
Length = 587

Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 22 ttaaatagtaatattagtaatagtaa 47
||||||||||||| ||||||||||||
Sbjct: 153 ttaaatagtaataatagtaatagtaa 178


>Contig-U02975-1 (Contig-U02975-1Q) /CSM_Contig/Contig-U02975-1Q.Seq.d
Length = 572

Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 24 aaatagtaatattagtaatagtaa 47
||||||||||| ||||||||||||
Sbjct: 45 aaatagtaataatagtaatagtaa 68


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,027
Number of Sequences: 6905
Number of extensions: 11027
Number of successful extensions: 1229
Number of sequences better than 10.0: 149
length of query: 730
length of database: 5,674,871
effective HSP length: 16
effective length of query: 714
effective length of database: 5,564,391
effective search space: 3972975174
effective search space used: 3972975174
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U09813-1 (Contig-U09813-1Q) /CSM_Contig/Contig-U09813-1Q.Seq.d
(730 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU269009) Dictyostelium discoideum vegetative cDNA clone:VS... 1156 0.0 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 537 0.0 4
(AU269008) Dictyostelium discoideum vegetative cDNA clone:VS... 133 1e-26 1
(FH525447) CHO_OF4800xl13f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 0.009 3
(FE243647) CAPG7756.fwd CAPG Naegleria gruberi amoeba stage ... 40 0.024 2
(FE235415) CAPG3348.fwd CAPG Naegleria gruberi amoeba stage ... 40 0.024 2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 38 0.076 10
(BM170805) EST573328 PyBS Plasmodium yoelii yoelii cDNA clon... 38 0.092 2
(AC161969) Bos taurus clone CH240-108J16, WORKING DRAFT SEQU... 40 0.26 3
(DC230498) Plasmodium berghei strain ANKA cDNA clone:SG01882... 38 0.35 2
(CR848717) Zebrafish DNA sequence from clone DKEY-148B12 in ... 48 0.47 1
(CR847795) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.47 1
(AC169576) Bos taurus clone CH240-198N19, WORKING DRAFT SEQU... 48 0.47 1
(AC095065) Homo sapiens BAC clone RP11-648P3 from 4, complet... 40 0.49 2
(AC160583) Atelerix albiventris clone LB4-152N11, WORKING DR... 36 0.98 2
(AC175224) Atelerix albiventris clone LB4-33H20, WORKING DRA... 36 0.98 2
(AC218483) Bos taurus clone CH240-313P3, WORKING DRAFT SEQUE... 40 1.0 4
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 1.0 6
(DU268640) 1098589000760 CHORI-243 Ovis aries genomic clone ... 42 1.0 2
(AJ821286) Theileria annulata EST, clone C0005205o7. 38 1.2 2
(AC121513) Mus musculus chromosome 18, clone RP24-391B9, com... 46 1.8 1
(AC183294) Pan troglodytes BAC clone CH251-545A24 from chrom... 46 1.8 1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.8 1
(AC135429) Oryza sativa Japonica Group chromosome 5 clone P0... 46 1.8 1
(AC130600) Oryza sativa Japonica Group chromosome 5 clone OS... 46 1.8 1
(Z79999) Human DNA sequence from clone CITF22-111A3 on chrom... 46 1.8 1
(AC107982) Homo sapiens chromosome 17, clone CTD-2145A24, co... 46 1.8 1
(AC018989) Homo sapiens chromosome 17, clone RP11-273K13, co... 46 1.8 1
(AC005324) Homo sapiens chromosome 17, clone hRPK.640_I_15, ... 46 1.8 1
(AC145825) Pan troglodytes clone rp43-37f24, WORKING DRAFT S... 46 1.8 1
(AC107931) Homo sapiens chromosome 17 clone RP11-466H1 map 1... 46 1.8 1
(AC095241) Rattus norvegicus clone CH230-10D18, *** SEQUENCI... 46 1.8 1
(AC026964) Homo sapiens chromosome 17 clone RP11-304M13 map ... 46 1.8 1
(AC219884) Bos taurus clone CH240-319E21, WORKING DRAFT SEQU... 46 1.8 1
(AC214902) Pan troglodytes clone rp43-10a18, WORKING DRAFT S... 46 1.8 1
(AC213551) Equus caballus clone CH241-324L16, WORKING DRAFT ... 46 1.8 1
(AC181872) Strongylocentrotus purpuratus clone R3-1019I3, WO... 46 1.8 1
(AC163897) Medicago truncatula chromosome 7 clone mth2-58l23... 46 1.8 1
(AZ344987) 1M0079M18F Mouse 10kb plasmid UUGC1M library Mus ... 46 1.8 1
(ER332534) 1092344275583 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.8 1
(EJ166697) 1092344068277 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.8 1
(EJ039117) 1095454084142 Global-Ocean-Sampling_GS-26-01-01-1... 46 1.8 1
(EI366343) R_763 High C+G patch (HCGP) library Oryza sativa ... 46 1.8 1
(AJ864683) Orpinomyces sp. OUS1 GSS, clone E2-41. 46 1.8 1
(CR957662) Homo sapiens PAC end sequence of RZPDB737A085D fr... 46 1.8 1
(CE836995) tigr-gss-dog-17000332593670 Dog Library Canis lup... 46 1.8 1
(DT950151) CFW107-G01.y1d-s SHGC-CFW Gasterosteus aculeatus ... 46 1.8 1
(AM054158) Eudiplodinium maggii EST, clone Em05_B01. 46 1.8 1
(BY914221) Bombyx mori cDNA, clone:E_ET_an--_04E03_F_0, 5' e... 46 1.8 1
(BY914212) Bombyx mori cDNA, clone:E_ET_an--_04D05_F_0, 5' e... 46 1.8 1
(AW136035) UI-H-BI1-adn-f-12-0-UI.s1 NCI_CGAP_Sub3 Homo sapi... 46 1.8 1
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 46 1.8 1
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 46 1.8 1
(CP000551) Prochlorococcus marinus str. AS9601, complete gen... 46 1.8 1
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 46 1.8 1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 46 1.8 1
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 38 1.9 9
(AC123640) Mus musculus chromosome 15, clone RP23-11D17, com... 34 1.9 5
(CS468878) Sequence 69 from Patent EP1748080. 42 2.0 6
(CS419355) Sequence 69 from Patent WO2006094836. 42 2.0 6
(DE306051) Bombyx mori genomic DNA, BAC clone:BES_072_D21. 38 2.2 2
(BP886208) Solanum lycopersicum cDNA, clone: FA33DE07, 5' en... 42 2.3 2
(BP878365) Solanum lycopersicum cDNA, clone: FA11CC05, 5' en... 42 2.6 2
(DE587762) Bombyx mori genomic DNA, Fosmid clone:GBMFno240_g... 38 3.0 2
(DE306035) Bombyx mori genomic DNA, BAC clone:BES_072_C22. 38 3.1 2
(FG203060) AGN_PNL233cr1_h6.trimmed.seq AGN_PNL Nicotiana ta... 42 3.6 2
(BZ673412) PUBAQ03TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 3.7 2
(CL905012) OA_ABa0003A10.r OA_ABa Oryza australiensis genomi... 36 3.7 2
(ET078247) QM0AAB6BE01RM2 CCER1 Citrus clementina genomic cl... 38 3.9 2
(FH942871) CHO_OF6732xn14f1.ab1 CHO_OF6 Nicotiana tabacum ge... 42 4.0 2
(AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple... 38 4.1 2
(AM437171) Vitis vinifera, whole genome shotgun sequence, co... 34 4.1 2
(BW691695) Solanum lycopersicum cDNA, clone: FC23AG02, 5' en... 42 4.2 2
(DU853843) 57571 Tomato HindIII BAC Library Solanum lycopers... 38 4.4 2
(FH740687) CHO_OF5152xg14r1.ab1 CHO_OF5 Nicotiana tabacum ge... 36 4.4 2
(AC156670) Bos taurus clone CH240-60K24, WORKING DRAFT SEQUE... 36 4.5 3
(FG724292) G1144P341RH20.T0 Anolis carolinensis pooled norma... 36 4.6 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 4.6 11
(BE561984) 601346754F1 NIH_MGC_8 Homo sapiens cDNA clone IMA... 32 4.6 2
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 36 4.9 9
(AC109733) Rattus norvegicus clone CH230-325E4, *** SEQUENCI... 36 5.0 5
(CR911971) Sus scrofa BES. 32 5.2 3
(AC178500) Strongylocentrotus purpuratus clone R3-3032L5, WO... 44 5.3 4
(AK246760) Solanum lycopersicum cDNA, clone: FC23AG02, HTC i... 42 5.6 2
(AX344571) Sequence 22 from Patent WO0200932. 38 5.9 4
(CT476823) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 6.1 6
(BX664752) Zebrafish DNA sequence from clone DKEYP-111E5 in ... 42 6.5 5
(AC176498) Strongylocentrotus purpuratus clone R3-3072G15, W... 38 6.9 5
(CR392347) Zebrafish DNA sequence from clone DKEY-37G12 in l... 44 7.3 1
(BX649538) Zebrafish DNA sequence from clone CH211-239N21 in... 44 7.3 1
(BX005349) Zebrafish DNA sequence from clone DKEY-111D8 in l... 44 7.3 1
(AL935273) Zebrafish DNA sequence from clone CH211-274L13. 44 7.3 1
(AL772133) Zebrafish DNA sequence from clone CH211-121J5 in ... 44 7.3 1
(AC157745) Xenopus tropicalis clone ISB1-79H24, complete seq... 44 7.3 1
(AC138452) Medicago truncatula chromosome 8 clone mth2-17p11... 44 7.3 1
(AF081584) Dictyostelium discoideum developmental protein Gb... 44 7.3 1
(AC080136) Homo sapiens 12 BAC RP11-804E10 (Roswell Park Can... 44 7.3 1
(AC025278) Homo sapiens chromosome 19 clone RP11-1137G4, com... 44 7.3 1
(AC020895) Homo sapiens chromosome 19 clone CTC-312O10, comp... 44 7.3 1
(AC005854) Homo sapiens, complete sequence. 44 7.3 1

>(AU269009) Dictyostelium discoideum vegetative cDNA clone:VSI640,
3' end single read.
Length = 616

Score = 1156 bits (583), Expect = 0.0
Identities = 583/583 (100%)
Strand = Plus / Plus


Query: 148 gtagtaatcctaaaactccaaatggaaaagaaggtggattaccagatctaaataataact 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 gtagtaatcctaaaactccaaatggaaaagaaggtggattaccagatctaaataataact 92


Query: 208 gcccagtttgcggtatttcatttaaatctattggaaaggattggccatcaattaataaac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 gcccagtttgcggtatttcatttaaatctattggaaaggattggccatcaattaataaac 152


Query: 268 atatcgatgaatgtttaacctttaatttattggataaagagacattagatccaaaagcca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atatcgatgaatgtttaacctttaatttattggataaagagacattagatccaaaagcca 212


Query: 328 aatcaacaactattaaatgtccttacagtggatgtaaaaagtcaatgacaacagtagaat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aatcaacaactattaaatgtccttacagtggatgtaaaaagtcaatgacaacagtagaat 272


Query: 388 ttataaatcattgtaatgaaaagcatttgctagacgatgttcataattataagtgtcctt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttataaatcattgtaatgaaaagcatttgctagacgatgttcataattataagtgtcctt 332


Query: 448 tatgtaatgaaaagtcaccaaatttaattagccatctaagtaaaacacatataagggttc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tatgtaatgaaaagtcaccaaatttaattagccatctaagtaaaacacatataagggttc 392


Query: 508 aacaaaaacaagttggtgttggttattcaacaagtgtacttgaaaatgatttaagtgaag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aacaaaaacaagttggtgttggttattcaacaagtgtacttgaaaatgatttaagtgaag 452


Query: 568 atattgaatgtccaatttgtcttgaagagttcacaaaaggtcaaaatgtggcccgtttag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atattgaatgtccaatttgtcttgaagagttcacaaaaggtcaaaatgtggcccgtttag 512


Query: 628 aatgttggtgcatatttcatacaaattgtatttctgaatatttattaaaatcaaagaaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aatgttggtgcatatttcatacaaattgtatttctgaatatttattaaaatcaaagaaat 572


Query: 688 gcccagtccataattaacttatttaaaaagaagaacaaaaata 730
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gcccagtccataattaacttatttaaaaagaagaacaaaaata 615

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 867,669,259
Number of extensions: 54897792
Number of successful extensions: 4509740
Number of sequences better than 10.0: 146
Length of query: 730
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 706
Effective length of database: 97,308,875,965
Effective search space: 68700066431290
Effective search space used: 68700066431290
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09813-1 (Contig-U09813-1Q) /CSM_Contig/Contig-U09813-1Q.Seq.d
(730 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q08CN9) RecName: Full=E3 ubiquitin-protein ligase ZNRF2; ... 64 4e-09
(Q91V17) RecName: Full=E3 ubiquitin-protein ligase ZNRF1; ... 64 5e-09
(Q8ND25) RecName: Full=E3 ubiquitin-protein ligase ZNRF1; ... 64 5e-09
AX961900_1(AX961900|pid:none) Sequence 111 from Patent WO03104277. 64 5e-09
AY054122_1(AY054122|pid:none) Homo sapiens Ells2 mRNA, partial c... 64 6e-09
(Q8NHG8) RecName: Full=E3 ubiquitin-protein ligase ZNRF2; ... 64 6e-09
BC047964_1(BC047964|pid:none) Xenopus laevis nerve injury gene 2... 62 1e-08
AC024200_2(AC024200|pid:none) Caenorhabditis elegans cosmid Y71F... 62 2e-08
CR380954_315(CR380954|pid:none) Candida glabrata strain CBS138 c... 59 2e-07
BC104316_1(BC104316|pid:none) Mus musculus zinc and ring finger ... 58 3e-07
BC150372_1(BC150372|pid:none) Danio rerio zgc:171663, mRNA (cDNA... 57 6e-07
CU424444_2(CU424444|pid:none) Zebrafish DNA sequence from clone ... 57 6e-07
AM920436_1336(AM920436|pid:none) Penicillium chrysogenum Wiscons... 56 1e-06
BC057533_1(BC057533|pid:none) Danio rerio zgc:66427, mRNA (cDNA ... 56 1e-06
AK030575_1(AK030575|pid:none) Mus musculus adult male pituitary ... 55 2e-06
AX399852_1(AX399852|pid:none) Sequence 23 from Patent WO0218424. 55 2e-06
CR382137_328(CR382137|pid:none) Debaryomyces hansenii strain CBS... 55 2e-06
CP000497_464(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 54 6e-06
FB874628_1(FB874628|pid:none) Sequence 93901 from Patent WO20080... 52 2e-05
AC148528_12(AC148528|pid:none) Medicago truncatula clone mth2-53... 52 2e-05
AE016814_148(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 52 2e-05
AK226506_1(AK226506|pid:none) Arabidopsis thaliana mRNA for hypo... 51 3e-05
CU928170_294(CU928170|pid:none) Kluyveromyces thermotolerans str... 51 3e-05
AF424605_1(AF424605|pid:none) Arabidopsis thaliana AT4g31450/F3L... 51 3e-05
BC133164_1(BC133164|pid:none) Danio rerio cDNA clone MGC:158807 ... 51 4e-05
CR848559_1(CR848559|pid:none) Xenopus tropicalis finished cDNA, ... 50 7e-05
AK122819_1(AK122819|pid:none) Homo sapiens cDNA FLJ16418 fis, cl... 50 7e-05
(Q6ZSG1) RecName: Full=RING finger protein 165; &AK127467_1(AK1... 50 7e-05
(Q6DIP3) RecName: Full=RING finger protein 126; &BC075492_1(BC0... 50 7e-05
BT066938_1(BT066938|pid:none) Zea mays full-length cDNA clone ZM... 50 9e-05
AY088181_1(AY088181|pid:none) Arabidopsis thaliana clone 426 mRN... 50 9e-05
AB006707_12(AB006707|pid:none) Arabidopsis thaliana genomic DNA,... 50 9e-05
CU928175_592(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 49 1e-04
BT064086_1(BT064086|pid:none) Zea mays full-length cDNA clone ZM... 49 1e-04
AK095327_1(AK095327|pid:none) Homo sapiens cDNA FLJ38008 fis, cl... 49 2e-04
BC010369_1(BC010369|pid:none) Homo sapiens ring finger protein 1... 49 2e-04
BC147931_1(BC147931|pid:none) Bos taurus ring finger protein 111... 49 2e-04
AX405832_1(AX405832|pid:none) Sequence 247 from Patent WO0222660. 49 2e-04
(Q5R476) RecName: Full=E3 ubiquitin-protein ligase Arkadia; ... 49 2e-04
(Q6IRP0) RecName: Full=RING finger protein 126-B; &BC070697_1(B... 49 2e-04
(Q6ZNA4) RecName: Full=E3 ubiquitin-protein ligase Arkadia; ... 49 2e-04
(Q9CY62) RecName: Full=RING finger protein 181; &AK010854_1(AK0... 49 2e-04
AK018849_1(AK018849|pid:none) Mus musculus adult male testis cDN... 49 2e-04
AK048110_1(AK048110|pid:none) Mus musculus 16 days embryo head c... 49 2e-04
(Q99ML9) RecName: Full=E3 ubiquitin-protein ligase Arkadia; ... 49 2e-04
AF329846_1(AF329846|pid:none) Gallus gallus ring finger protein ... 49 2e-04
AL157474_1(AL157474|pid:none) Homo sapiens mRNA; cDNA DKFZp761D0... 49 2e-04
AK131488_1(AK131488|pid:none) Homo sapiens cDNA FLJ16671 fis, cl... 49 2e-04
AL731620_5(AL731620|pid:none) Oryza sativa genomic DNA, chromoso... 49 2e-04
(Q6NRV8) RecName: Full=E3 ubiquitin-protein ligase arkadia-B; ... 49 2e-04
(Q91YL2) RecName: Full=RING finger protein 126; &AK154781_1(AK1... 49 2e-04
AK131304_1(AK131304|pid:none) Homo sapiens cDNA FLJ16278 fis, cl... 49 2e-04
(Q7T0Q3) RecName: Full=RING finger protein 126-A; &BC056088_1(B... 49 2e-04
(Q66J97) RecName: Full=E3 ubiquitin-protein ligase arkadia-C; ... 48 3e-04
BX538130_1(BX538130|pid:none) Homo sapiens mRNA; cDNA DKFZp686H1... 48 3e-04
CT573450_1(CT573450|pid:none) Zebrafish DNA sequence from clone ... 48 3e-04
BC166566_1(BC166566|pid:none) Rattus norvegicus ring finger prot... 48 3e-04
AK133955_1(AK133955|pid:none) Mus musculus 8 days embryo whole b... 48 3e-04
(Q90ZT7) RecName: Full=E3 ubiquitin-protein ligase arkadia-A; ... 48 3e-04
AK014094_1(AK014094|pid:none) Mus musculus 13 days embryo head c... 48 3e-04
BC099810_1(BC099810|pid:none) Rattus norvegicus ring finger prot... 48 3e-04
(Q6AXU4) RecName: Full=RING finger protein 181; &BC079313_1(BC0... 48 3e-04
AC141107_35(AC141107|pid:none) Medicago truncatula clone mth2-34... 48 4e-04
AK066069_1(AK066069|pid:none) Oryza sativa Japonica Group cDNA c... 47 5e-04
BT056001_1(BT056001|pid:none) Zea mays full-length cDNA clone ZM... 47 5e-04
AL606622_9(AL606622|pid:none) Oryza sativa genomic DNA, chromoso... 47 5e-04
FJ225394_3(FJ225394|pid:none) Glycine max clone GM_WBb0070A12 de... 47 5e-04
BT071744_1(BT071744|pid:none) Picea sitchensis clone WS0451_G15 ... 47 6e-04
CR954206_431(CR954206|pid:none) Ostreococcus tauri strain OTTH05... 47 6e-04
(Q7ZW78) RecName: Full=RING finger protein 181; &CU041374_16(CU... 47 8e-04
AC135467_5(AC135467|pid:none) Medicago truncatula clone mth2-34h... 47 8e-04
AM462015_2(AM462015|pid:none) Vitis vinifera contig VV78X029871.... 47 8e-04
(Q3T0W3) RecName: Full=RING finger protein 181; &BC102230_1(BC1... 47 8e-04
AF079183_1(AF079183|pid:none) Arabidopsis thaliana RING-H2 finge... 47 8e-04
BT015305_1(BT015305|pid:none) Drosophila melanogaster AT15166 fu... 47 8e-04
AK000559_1(AK000559|pid:none) Homo sapiens cDNA FLJ20552 fis, cl... 47 8e-04
AB008264_13(AB008264|pid:none) Arabidopsis thaliana genomic DNA,... 47 8e-04
AC144514_21(AC144514|pid:none) Medicago truncatula clone mth2-12... 47 8e-04
(Q9BV68) RecName: Full=RING finger protein 126; &BC001442_1(BC0... 47 8e-04
AE014297_1407(AE014297|pid:none) Drosophila melanogaster chromos... 47 8e-04
CR861158_1(CR861158|pid:none) Pongo abelii mRNA; cDNA DKFZp459L1... 46 0.001
CR940352_90(CR940352|pid:none) Theileria annulata strain Ankara ... 46 0.001
AL831752_2(AL831752|pid:none) Mouse DNA sequence from clone RP23... 46 0.001
AL157699_3(AL157699|pid:none) Human DNA sequence from clone RP13... 46 0.001
AK135382_1(AK135382|pid:none) Mus musculus 12 days embryo female... 46 0.001
BC081885_1(BC081885|pid:none) Rattus norvegicus similar to praja... 46 0.001
BT041832_1(BT041832|pid:none) Zea mays full-length cDNA clone ZM... 46 0.001
AK290543_1(AK290543|pid:none) Homo sapiens cDNA FLJ78308 complet... 46 0.001
AF264620_1(AF264620|pid:none) Homo sapiens PRAJA1BETA (PRAJA1BET... 46 0.001
AK294632_1(AK294632|pid:none) Homo sapiens cDNA FLJ55052 complet... 46 0.001
AK096611_1(AK096611|pid:none) Homo sapiens cDNA FLJ39292 fis, cl... 46 0.001
AK005373_1(AK005373|pid:none) Mus musculus adult male cerebellum... 46 0.001
AE014135_67(AE014135|pid:none) Drosophila melanogaster chromosom... 46 0.001
(O55176) RecName: Full=E3 ubiquitin-protein ligase Praja1; ... 46 0.001
AL831752_1(AL831752|pid:none) Mouse DNA sequence from clone RP23... 46 0.001
AK021892_1(AK021892|pid:none) Homo sapiens cDNA FLJ11830 fis, cl... 46 0.001
BT026528_1(BT026528|pid:none) Bos taurus praja 1 (PJA1), mRNA, c... 46 0.001
AF335251_1(AF335251|pid:none) Mus musculus Praja1 isoform c (Pja... 46 0.001
DQ415920_18(DQ415920|pid:none) Cleome spinosa clone BAC Cs3, com... 46 0.001
AB171443_1(AB171443|pid:none) Macaca fascicularis brain cDNA clo... 46 0.001
AK293266_1(AK293266|pid:none) Homo sapiens cDNA FLJ53433 complet... 46 0.001
AM467682_1(AM467682|pid:none) Vitis vinifera contig VV78X221997.... 46 0.001
EU961756_1(EU961756|pid:none) Zea mays clone 238102 unknown mRNA. 46 0.001
AC002409_3(AC002409|pid:none) Arabidopsis thaliana chromosome 2 ... 46 0.001
EF083336_1(EF083336|pid:none) Picea sitchensis clone WS0289_N02 ... 46 0.001
AK120070_1(AK120070|pid:none) Oryza sativa Japonica Group cDNA c... 46 0.001
AM469216_4(AM469216|pid:none) Vitis vinifera contig VV78X201907.... 46 0.001
EU969154_1(EU969154|pid:none) Zea mays clone 326453 unknown mRNA. 45 0.002
AK008329_1(AK008329|pid:none) Mus musculus adult male small inte... 45 0.002
AC091774_10(AC091774|pid:none) Oryza sativa chromosome 6 BAC OJ1... 45 0.002
BT062474_1(BT062474|pid:none) Zea mays full-length cDNA clone ZM... 45 0.002
BC048323_1(BC048323|pid:none) Homo sapiens praja ring finger 1, ... 45 0.002
EU824032_1(EU824032|pid:none) Populus tremula isolate swl312-76 ... 45 0.002
BT051302_1(BT051302|pid:none) Medicago truncatula clone MTYF1_F2... 45 0.002
BT067018_1(BT067018|pid:none) Zea mays full-length cDNA clone ZM... 45 0.002
AK000322_1(AK000322|pid:none) Homo sapiens cDNA FLJ20315 fis, cl... 45 0.002
BT066953_1(BT066953|pid:none) Zea mays full-length cDNA clone ZM... 45 0.002
AK291027_1(AK291027|pid:none) Homo sapiens cDNA FLJ77466 complet... 45 0.002
AK296769_1(AK296769|pid:none) Homo sapiens cDNA FLJ50102 complet... 45 0.002
CR627423_1(CR627423|pid:none) Homo sapiens mRNA; cDNA DKFZp781H0... 45 0.002
AK299024_1(AK299024|pid:none) Homo sapiens cDNA FLJ51697 complet... 45 0.002
(Q68DV7) RecName: Full=RING finger protein 43; Flags: Precursor;... 45 0.002
AB081837_1(AB081837|pid:none) Homo sapiens urcc mRNA, complete c... 45 0.002
BT068134_1(BT068134|pid:none) Zea mays full-length cDNA clone ZM... 45 0.002
(Q9P0P0) RecName: Full=RING finger protein 181; &AC016753_5(AC0... 45 0.003
AC006248_7(AC006248|pid:none) Arabidopsis thaliana chromosome 2 ... 45 0.003
AK070491_1(AK070491|pid:none) Oryza sativa Japonica Group cDNA c... 45 0.003
AM883105_1(AM883105|pid:none) Spinacia oleracea mRNA for NEP1-in... 45 0.003
EU963676_1(EU963676|pid:none) Zea mays clone 265678 RHC1A mRNA, ... 45 0.003
(Q9Y4L5) RecName: Full=RING finger protein 115; AltName: Full=Zi... 45 0.003
AL079314_1(AL079314|pid:none) Homo sapiens mRNA full length inse... 45 0.003
AM473198_1(AM473198|pid:none) Vitis vinifera contig VV78X021532.... 45 0.003
DQ213806_1(DQ213806|pid:none) Taeniopygia guttata clone 0061P001... 44 0.004
AL022223_17(AL022223|pid:none) Arabidopsis thaliana DNA chromoso... 44 0.004
FB874642_1(FB874642|pid:none) Sequence 93915 from Patent WO20080... 44 0.004
(Q9FIR0) RecName: Full=Putative RING-H2 finger protein ATL5L; &... 44 0.004
AC011809_11(AC011809|pid:none) Arabidopsis thaliana chromosome I... 44 0.004
EU824031_1(EU824031|pid:none) Populus tremula isolate swl312-75 ... 44 0.004
EU824016_1(EU824016|pid:none) Populus tremula isolate swl312-14 ... 44 0.004
BT061449_1(BT061449|pid:none) Zea mays full-length cDNA clone ZM... 44 0.004
EU824036_1(EU824036|pid:none) Populus tremula isolate swl312-85 ... 44 0.004
BT052350_1(BT052350|pid:none) Medicago truncatula clone MTYFD_FE... 44 0.004
EU824051_1(EU824051|pid:none) Populus tremula isolate swl312-64E... 44 0.004
EF147412_1(EF147412|pid:none) Populus trichocarpa clone WS01230_... 44 0.004
AC135462_17(AC135462|pid:none) Medicago truncatula clone mth2-35... 44 0.004
AM445444_2(AM445444|pid:none) Vitis vinifera contig VV78X011470.... 44 0.004
BT074946_1(BT074946|pid:none) Osmerus mordax clone omor-eva-511-... 44 0.004
AM454201_1(AM454201|pid:none) Vitis vinifera contig VV79X002445.... 44 0.004
BT071558_1(BT071558|pid:none) Picea sitchensis clone WS02924_J14... 44 0.004
EU824014_1(EU824014|pid:none) Populus tremula isolate swl312-3 t... 44 0.004
BT037305_1(BT037305|pid:none) Zea mays full-length cDNA clone ZM... 44 0.005
FB817272_1(FB817272|pid:none) Sequence 36545 from Patent WO20080... 44 0.005
EU960604_1(EU960604|pid:none) Zea mays clone 226548 protein bind... 44 0.005
AL031620_5(AL031620|pid:none) Caenorhabditis elegans Cosmid C18B... 44 0.005
CP001331_84(CP001331|pid:none) Micromonas sp. RCC299 chromosome ... 44 0.005
AC004473_23(AC004473|pid:none) Arabidopsis thaliana chromosome 1... 44 0.005
BT023885_1(BT023885|pid:none) Drosophila melanogaster RE59544 fu... 44 0.005
AK227950_1(AK227950|pid:none) Arabidopsis thaliana mRNA for RING... 44 0.005
AC006300_6(AC006300|pid:none) Arabidopsis thaliana chromosome 2 ... 44 0.005
DQ415922_14(DQ415922|pid:none) Cleome spinosa clone BAC Cs1, com... 44 0.005
AC079674_7(AC079674|pid:none) Arabidopsis thaliana chromosome 1 ... 44 0.005
(P87139) RecName: Full=Uncharacterized RING finger protein C57A7... 44 0.007
AP002521_8(AP002521|pid:none) Oryza sativa Japonica Group genomi... 44 0.007
BT053897_1(BT053897|pid:none) Zea mays full-length cDNA clone ZM... 44 0.007
AK317090_1(AK317090|pid:none) Arabidopsis thaliana AT5G10650 mRN... 44 0.007
(Q8LE94) RecName: Full=E3 ubiquitin-protein ligase At3g02290; ... 44 0.007
AC135606_14(AC135606|pid:none) Medicago truncatula clone mth2-10... 44 0.007
AK060092_1(AK060092|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.007
AM433861_1(AM433861|pid:none) Vitis vinifera contig VV78X073759.... 44 0.007
AK073728_1(AK073728|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.007
AM463545_1(AM463545|pid:none) Vitis vinifera contig VV78X191796.... 44 0.007
AY045983_1(AY045983|pid:none) Arabidopsis thaliana unknown prote... 44 0.007
AY099680_1(AY099680|pid:none) Arabidopsis thaliana Pspzf zinc fi... 44 0.007
AC011708_11(AC011708|pid:none) Arabidopsis thaliana chromosome I... 44 0.007
EU970593_1(EU970593|pid:none) Zea mays clone 347660 zinc finger,... 44 0.007
AB017069_3(AB017069|pid:none) Arabidopsis thaliana genomic DNA, ... 44 0.007
BT015918_1(BT015918|pid:none) Arabidopsis thaliana At5g10650 gen... 44 0.007
AK117391_1(AK117391|pid:none) Arabidopsis thaliana At3g47990 mRN... 43 0.009
BT066596_1(BT066596|pid:none) Zea mays full-length cDNA clone ZM... 43 0.009
AC013482_19(AC013482|pid:none) Genomic sequence for Arabidopsis ... 43 0.009
AC137823_24(AC137823|pid:none) Medicago truncatula clone mth2-14... 43 0.009
AC009755_5(AC009755|pid:none) Arabidopsis thaliana chromosome II... 43 0.009
AK071468_1(AK071468|pid:none) Oryza sativa Japonica Group cDNA c... 43 0.009
BC079688_1(BC079688|pid:none) Xenopus laevis MGC80300 protein, m... 43 0.009
CR954217_56(CR954217|pid:none) Ostreococcus tauri strain OTTH059... 43 0.009
BT048669_1(BT048669|pid:none) Salmo salar clone ssal-evd-554-047... 43 0.009
(Q9WTV7) RecName: Full=E3 ubiquitin-protein ligase RNF12; ... 43 0.011
(Q80U04) RecName: Full=E3 ubiquitin-protein ligase Praja2; ... 43 0.011
AK122282_1(AK122282|pid:none) Mus musculus mRNA for mKIAA0438 pr... 43 0.011
AM485058_5(AM485058|pid:none) Vitis vinifera contig VV78X234046.... 43 0.011
AF385699_1(AF385699|pid:none) Arabidopsis thaliana AT3g15070/K15... 43 0.011
BT036735_1(BT036735|pid:none) Zea mays full-length cDNA clone ZM... 43 0.011
EU960987_1(EU960987|pid:none) Zea mays clone 230224 RHC1A mRNA, ... 43 0.011
EU959798_1(EU959798|pid:none) Zea mays clone 220058 RHC1A mRNA, ... 43 0.011
AK072211_1(AK072211|pid:none) Oryza sativa Japonica Group cDNA c... 43 0.011
CR749579_1(CR749579|pid:none) Homo sapiens mRNA; cDNA DKFZp779F2... 43 0.011
CT737139_3(CT737139|pid:none) Zebrafish DNA sequence from clone ... 43 0.011
AL031635_12(AL031635|pid:none) Caenorhabditis elegans YAC Y47D3B... 43 0.011
AM270133_53(AM270133|pid:none) Aspergillus niger contig An07c016... 43 0.011
FN392322_444(FN392322|pid:none) Pichia pastoris GS115 chromosome... 43 0.011
BC150108_1(BC150108|pid:none) Bos taurus praja ring finger 2, mR... 43 0.011
CR860713_1(CR860713|pid:none) Pongo abelii mRNA; cDNA DKFZp459D0... 43 0.011
(Q63364) RecName: Full=E3 ubiquitin-protein ligase Praja2; ... 43 0.011
AP000370_21(AP000370|pid:none) Arabidopsis thaliana genomic DNA,... 43 0.011
BC056113_1(BC056113|pid:none) Xenopus laevis hypothetical protei... 43 0.011
AK103314_1(AK103314|pid:none) Oryza sativa Japonica Group cDNA c... 43 0.011
CP000591_37(CP000591|pid:none) Ostreococcus lucimarinus CCE9901 ... 43 0.011
AK061459_1(AK061459|pid:none) Oryza sativa Japonica Group cDNA c... 43 0.011
BT015124_1(BT015124|pid:none) Arabidopsis thaliana At1g51930 mRN... 43 0.011
AM462788_3(AM462788|pid:none) Vitis vinifera contig VV78X037236.... 43 0.011
BC030826_1(BC030826|pid:none) Homo sapiens praja ring finger 2, ... 43 0.011
BT034350_1(BT034350|pid:none) Zea mays full-length cDNA clone ZM... 43 0.011
AB025631_20(AB025631|pid:none) Arabidopsis thaliana genomic DNA,... 42 0.015
FB817268_1(FB817268|pid:none) Sequence 36541 from Patent WO20080... 42 0.015
AK118283_1(AK118283|pid:none) Arabidopsis thaliana At3g19950 mRN... 42 0.015
AY095995_1(AY095995|pid:none) Arabidopsis thaliana AT3g19950/MPN... 42 0.015
CT025878_1(CT025878|pid:none) Zebrafish DNA sequence from clone ... 42 0.015
AJ720228_1(AJ720228|pid:none) Gallus gallus mRNA for hypothetica... 42 0.015
(Q9QYK7) RecName: Full=RING finger protein 11; AltName: Full=NED... 42 0.015
BC043736_1(BC043736|pid:none) Xenopus laevis ring finger protein... 42 0.015
EF148378_1(EF148378|pid:none) Populus trichocarpa x Populus delt... 42 0.015
AP004687_9(AP004687|pid:none) Oryza sativa Japonica Group genomi... 42 0.015
BC170899_1(BC170899|pid:none) Xenopus tropicalis ring finger pro... 42 0.015
DQ487553_1(DQ487553|pid:none) Arabidopsis thaliana clone 0000003... 42 0.015
BT010696_1(BT010696|pid:none) Arabidopsis thaliana At1g68180 mRN... 42 0.015
BT074923_1(BT074923|pid:none) Osmerus mordax clone omor-rgc-505-... 42 0.015
(Q08DI6) RecName: Full=RING finger protein 11; &(Q9Y3C5) RecNam... 42 0.015
AF220206_1(AF220206|pid:none) Mus musculus Nedd4 WW domain-bindi... 42 0.015
EF147124_1(EF147124|pid:none) Populus trichocarpa clone WS01227_... 42 0.015
(Q93Z92) RecName: Full=E3 ubiquitin-protein ligase At4g11680; ... 42 0.015
BT035414_1(BT035414|pid:none) Zea mays full-length cDNA clone ZM... 42 0.015
AK071673_1(AK071673|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.015
AM447686_2(AM447686|pid:none) Vitis vinifera contig VV78X003621.... 42 0.019
BT001518_1(BT001518|pid:none) Drosophila melanogaster LP11469 fu... 42 0.019
AK065626_1(AK065626|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.019
AM502233_138(AM502233|pid:none) Leishmania infantum chromosome 15. 42 0.019
BT064886_1(BT064886|pid:none) Zea mays full-length cDNA clone ZM... 42 0.019
CT005254_147(CT005254|pid:none) Leishmania major strain Friedlin... 42 0.019
EU962263_1(EU962263|pid:none) Zea mays clone 241385 protein bind... 42 0.019
(Q9VE61) RecName: Full=RING finger protein 181 homolog; &AE0142... 42 0.019
AC144431_1(AC144431|pid:none) Medicago truncatula clone mth2-21i... 42 0.019
AC007576_29(AC007576|pid:none) Arabidopsis thaliana chromosome I... 42 0.019
BT033685_1(BT033685|pid:none) Zea mays full-length cDNA clone ZM... 42 0.019
AP003450_26(AP003450|pid:none) Oryza sativa Japonica Group genom... 42 0.019
DQ465380_1(DQ465380|pid:none) Oreochromis mossambicus clone SSH ... 42 0.019
AM461071_3(AM461071|pid:none) Vitis vinifera contig VV78X064470.... 42 0.019
AK293047_1(AK293047|pid:none) Homo sapiens cDNA FLJ77817 complet... 42 0.019
AF386995_1(AF386995|pid:none) Arabidopsis thaliana putative prot... 42 0.019
AB018422_1(AB018422|pid:none) Pisum sativum mRNA for DNA binding... 42 0.019
AB006707_5(AB006707|pid:none) Arabidopsis thaliana genomic DNA, ... 42 0.025
AY086602_1(AY086602|pid:none) Arabidopsis thaliana clone 261272 ... 42 0.025
(Q07G42) RecName: Full=E3 ubiquitin-protein ligase rnf12; ... 42 0.025
AL590447_33(AL590447|pid:none) chromosome VII of strain GB-M1 of... 42 0.025
AM441534_3(AM441534|pid:none) Vitis vinifera contig VV78X035471.... 42 0.025
AK120485_1(AK120485|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.025
BT061354_1(BT061354|pid:none) Zea mays full-length cDNA clone ZM... 42 0.025
AK229265_1(AK229265|pid:none) Arabidopsis thaliana mRNA for hypo... 42 0.025
BC097491_1(BC097491|pid:none) Rattus norvegicus ring finger prot... 42 0.025
DQ336954_11(DQ336954|pid:none) Glycine max cultivar Williams 82 ... 42 0.025
AB168660_1(AB168660|pid:none) Macaca fascicularis testis cDNA cl... 42 0.025
AJ271670_1(AJ271670|pid:none) Homo sapiens Rnf12 gene for RING z... 42 0.025
BT041411_1(BT041411|pid:none) Zea mays full-length cDNA clone ZM... 42 0.025
AC134045_28(AC134045|pid:none) Oryza sativa (japonica cultivar-g... 42 0.025
AC006607_11(AC006607|pid:none) Caenorhabditis elegans cosmid C09... 42 0.025
AY048293_1(AY048293|pid:none) Arabidopsis thaliana AT5g41350/MYC... 42 0.025
AP006149_38(AP006149|pid:none) Oryza sativa Japonica Group genom... 42 0.025
AK001334_1(AK001334|pid:none) Homo sapiens cDNA FLJ10472 fis, cl... 42 0.025
DQ652687_1(DQ652687|pid:none) Arabidopsis thaliana clone 0000014... 42 0.025
DQ487563_1(DQ487563|pid:none) Arabidopsis thaliana clone 0000014... 42 0.025
AF155109_1(AF155109|pid:none) Homo sapiens putative ring zinc fi... 42 0.025
BT065564_1(BT065564|pid:none) Zea mays full-length cDNA clone ZM... 42 0.025
AB009049_7(AB009049|pid:none) Arabidopsis thaliana genomic DNA, ... 42 0.025
AB017069_6(AB017069|pid:none) Arabidopsis thaliana genomic DNA, ... 42 0.025
AC145165_9(AC145165|pid:none) Medicago truncatula clone mth2-4j2... 42 0.025
AK229330_1(AK229330|pid:none) Arabidopsis thaliana mRNA for hypo... 42 0.025
AF428290_1(AF428290|pid:none) Arabidopsis thaliana At1g17970/F2H... 42 0.025
AC145165_11(AC145165|pid:none) Medicago truncatula clone mth2-4j... 42 0.025
EU959102_1(EU959102|pid:none) Zea mays clone 210425 protein bind... 42 0.025
EU964568_1(EU964568|pid:none) Zea mays clone 280056 protein bind... 41 0.033
(Q7T037) RecName: Full=E3 ubiquitin-protein ligase rnf12-B; ... 41 0.033
AK101391_1(AK101391|pid:none) Oryza sativa Japonica Group cDNA c... 41 0.033
AK108026_1(AK108026|pid:none) Oryza sativa Japonica Group cDNA c... 41 0.033
AB114041_1(AB114041|pid:none) Xenopus laevis XRnf12C mRNA for XR... 41 0.033
AB026654_15(AB026654|pid:none) Arabidopsis thaliana genomic DNA,... 41 0.033
JC1495(JC1495) regulatory protein G1 - fruit fly (Drosophila mel... 41 0.033
AC008263_27(AC008263|pid:none) Arabidopsis thaliana chromosome 1... 41 0.033
AP004880_11(AP004880|pid:none) Oryza sativa Japonica Group genom... 41 0.033
AK226665_1(AK226665|pid:none) Arabidopsis thaliana mRNA for hypo... 41 0.033
AP008208_2471(AP008208|pid:none) Oryza sativa (japonica cultivar... 41 0.033
CR925810_3(CR925810|pid:none) Zebrafish DNA sequence from clone ... 41 0.033
AC183495_11(AC183495|pid:none) Brassica oleracea Contig A, compl... 41 0.033
CU041374_17(CU041374|pid:none) Zebrafish DNA sequence from clone... 41 0.033
AM473379_1(AM473379|pid:none) Vitis vinifera contig VV78X073156.... 41 0.033
CU633438_520(CU633438|pid:none) Podospora anserina genomic DNA c... 41 0.033
EU965176_1(EU965176|pid:none) Zea mays clone 284301 protein bind... 41 0.033
AJ890364_110(AJ890364|pid:none) Emiliania huxleyi virus 86 isola... 41 0.033
EU824018_1(EU824018|pid:none) Populus tremula isolate swl312-16 ... 41 0.033
BC053118_1(BC053118|pid:none) Danio rerio ring finger protein 11... 41 0.033
BC065620_1(BC065620|pid:none) Danio rerio ring finger protein 13... 41 0.033
AC090874_15(AC090874|pid:none) Oryza sativa chromosome 3 BAC OJ1... 41 0.033
AK066238_1(AK066238|pid:none) Oryza sativa Japonica Group cDNA c... 41 0.033
AE013599_4255(AE013599|pid:none) Drosophila melanogaster chromos... 41 0.033
(Q641J8) RecName: Full=E3 ubiquitin-protein ligase rnf12-A; ... 41 0.033
AC151824_8(AC151824|pid:none) Medicago truncatula clone mth2-45n... 41 0.033
EU952415_1(EU952415|pid:none) Zea mays clone 1279986 hypothetica... 41 0.043
BT037505_1(BT037505|pid:none) Zea mays full-length cDNA clone ZM... 41 0.043
AC087182_2(AC087182|pid:none) Oryza sativa chromosome 10 BAC OSJ... 41 0.043
BT037294_1(BT037294|pid:none) Zea mays full-length cDNA clone ZM... 41 0.043
BC168458_1(BC168458|pid:none) Xenopus tropicalis cDNA clone MGC:... 41 0.043
EU973922_1(EU973922|pid:none) Zea mays clone 424283 protein bind... 41 0.043
AY084480_1(AY084480|pid:none) Arabidopsis thaliana clone 109181 ... 41 0.043
G84555(G84555)hypothetical protein At2g17730 [imported] - Arabid... 41 0.043
EU961155_1(EU961155|pid:none) Zea mays clone 232985 protein bind... 41 0.043
AP008216_900(AP008216|pid:none) Oryza sativa (japonica cultivar-... 41 0.043
BC098405_1(BC098405|pid:none) Homo sapiens zinc finger and AT ho... 41 0.043
BT066034_1(BT066034|pid:none) Zea mays full-length cDNA clone ZM... 41 0.043
EU971772_1(EU971772|pid:none) Zea mays clone 370380 unknown mRNA. 41 0.043
(Q66HG0) RecName: Full=RING finger protein 13; &BC081881_1(BC08... 41 0.043
AK167278_1(AK167278|pid:none) Mus musculus blastocyst blastocyst... 41 0.043
(Q9FGJ6) RecName: Full=RING-H2 finger protein ATL5M; Flags: Prec... 41 0.043
AK158046_1(AK158046|pid:none) Mus musculus adult inner ear cDNA,... 41 0.043
BC088816_1(BC088816|pid:none) Xenopus tropicalis ring finger and... 41 0.043
EU960124_1(EU960124|pid:none) Zea mays clone 222001 RING finger ... 41 0.043
BT036238_1(BT036238|pid:none) Zea mays full-length cDNA clone ZM... 41 0.043
BT037285_1(BT037285|pid:none) Zea mays full-length cDNA clone ZM... 40 0.056
BC025423_1(BC025423|pid:none) Homo sapiens zinc finger and AT ho... 40 0.056
FB817232_1(FB817232|pid:none) Sequence 36505 from Patent WO20080... 40 0.056
AC135594_35(AC135594|pid:none) Oryza sativa chromosome 3 BAC OSJ... 40 0.056
AM270371_28(AM270371|pid:none) Aspergillus niger contig An16c019... 40 0.056
AK300133_1(AK300133|pid:none) Homo sapiens cDNA FLJ50665 complet... 40 0.056
AB167738_1(AB167738|pid:none) Homo sapiens ZFAT-1 mRNA, complete... 40 0.056
EU967215_1(EU967215|pid:none) Zea mays clone 300387 hypothetical... 40 0.056
AK103147_1(AK103147|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.056
AM464982_3(AM464982|pid:none) Vitis vinifera contig VV78X061842.... 40 0.056
EU964448_1(EU964448|pid:none) Zea mays clone 278950 nucleic acid... 40 0.056
BT045963_1(BT045963|pid:none) Salmo salar clone ssal-rgf-537-317... 40 0.056
(Q08CG8) RecName: Full=RING finger protein 44; &BC124246_1(BC12... 40 0.056
BC143519_1(BC143519|pid:none) Homo sapiens zinc finger and AT ho... 40 0.056
AM469305_6(AM469305|pid:none) Vitis vinifera contig VV78X267210.... 40 0.056
BT060728_1(BT060728|pid:none) Zea mays full-length cDNA clone ZM... 40 0.056
AM920437_1943(AM920437|pid:none) Penicillium chrysogenum Wiscons... 40 0.056
BT061149_1(BT061149|pid:none) Zea mays full-length cDNA clone ZM... 40 0.056
AK023579_1(AK023579|pid:none) Homo sapiens cDNA FLJ13517 fis, cl... 40 0.056
AK300324_1(AK300324|pid:none) Homo sapiens cDNA FLJ53576 complet... 40 0.056
AL137898_8(AL137898|pid:none) Arabidopsis thaliana DNA chromosom... 40 0.056
AP007171_583(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.056
AY059830_1(AY059830|pid:none) Arabidopsis thaliana putative prot... 40 0.056
CT005272_303(CT005272|pid:none) Leishmania major strain Friedlin... 40 0.056
AB040918_1(AB040918|pid:none) Homo sapiens mRNA for KIAA1485 pro... 40 0.056
CP000584_405(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 40 0.056
AX250469_1(AX250469|pid:none) Sequence 75 from Patent WO0168863. 40 0.056
EU952645_1(EU952645|pid:none) Zea mays clone 1285281 protein bin... 40 0.056
EU966425_1(EU966425|pid:none) Zea mays clone 294406 protein bind... 40 0.056
AE017345_324(AE017345|pid:none) Cryptococcus neoformans var. neo... 40 0.073
AC140026_28(AC140026|pid:none) Medicago truncatula clone mth2-36... 40 0.073
AK118593_1(AK118593|pid:none) Arabidopsis thaliana At2g17730 mRN... 40 0.073
FN357535_20(FN357535|pid:none) Schistosoma mansoni genome sequen... 40 0.073
AE013599_2806(AE013599|pid:none) Drosophila melanogaster chromos... 40 0.073
AM430024_5(AM430024|pid:none) Vitis vinifera contig VV78X191346.... 40 0.073
EU952879_1(EU952879|pid:none) Zea mays clone 1292250 hypothetica... 40 0.073
BC063734_1(BC063734|pid:none) Xenopus laevis hypothetical protei... 40 0.073
BC068671_1(BC068671|pid:none) Xenopus laevis hypothetical protei... 40 0.073
BC076794_1(BC076794|pid:none) Xenopus laevis DNA polymerase kapp... 40 0.073
AC144431_2(AC144431|pid:none) Medicago truncatula clone mth2-21i... 40 0.073
AC105773_4(AC105773|pid:none) Oryza sativa (japonica cultivar-gr... 40 0.073
AE014297_876(AE014297|pid:none) Drosophila melanogaster chromoso... 40 0.073
EU351836_1(EU351836|pid:none) Arabidopsis thaliana ecotype El-0 ... 40 0.073
BT035443_1(BT035443|pid:none) Zea mays full-length cDNA clone ZM... 40 0.073
FN357583_23(FN357583|pid:none) Schistosoma mansoni genome sequen... 40 0.073
AP003491_9(AP003491|pid:none) Oryza sativa Japonica Group genomi... 40 0.073
EF087301_1(EF087301|pid:none) Picea sitchensis clone WS02742_I12... 40 0.073
AJ867480_1(AJ867480|pid:none) Zinnia elegans rh2.1 gene for RING... 40 0.073
FN357535_18(FN357535|pid:none) Schistosoma mansoni genome sequen... 40 0.073
U22375_2(U22375|pid:none) Feldmannia sp. virus Orf1, Orf2, and O... 40 0.073
(Q8W571) RecName: Full=RING-H2 finger protein ATL4O; Flags: Prec... 40 0.073
(Q8GT74) RecName: Full=RING-H2 finger protein ATL2B; AltName: Fu... 40 0.073
AM910992_26(AM910992|pid:none) Plasmodium knowlesi strain H chro... 40 0.073
BT036827_1(BT036827|pid:none) Zea mays full-length cDNA clone ZM... 40 0.096
CR382132_125(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 40 0.096
AC149050_8(AC149050|pid:none) Medicago truncatula chromosome 7 B... 40 0.096
AK105338_1(AK105338|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.096
(Q9FHG8) RecName: Full=Putative RING-H2 finger protein ATL5N; &... 40 0.096
AK068302_1(AK068302|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.096
AL161533_31(AL161533|pid:none) Arabidopsis thaliana DNA chromoso... 40 0.096
EF148380_1(EF148380|pid:none) Populus trichocarpa x Populus delt... 40 0.096
BT034938_1(BT034938|pid:none) Zea mays full-length cDNA clone ZM... 40 0.096
AC011765_28(AC011765|pid:none) Arabidopsis thaliana chromosome 1... 40 0.096
AY054498_1(AY054498|pid:none) Arabidopsis thaliana Unknown prote... 40 0.096
AP002066_3(AP002066|pid:none) Arabidopsis thaliana genomic DNA, ... 40 0.096
DQ885600_1(DQ885600|pid:none) Bubalus bubalis ring finger protei... 40 0.096
(Q8NC42) RecName: Full=E3 ubiquitin-protein ligase RNF149; ... 40 0.096
(Q0VD51) RecName: Full=RING finger protein 13; &BC119833_1(BC11... 40 0.096
BT036088_1(BT036088|pid:none) Zea mays full-length cDNA clone ZM... 40 0.096
EU953133_1(EU953133|pid:none) Zea mays clone 1385620 protein bin... 40 0.096
CP001328_278(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 40 0.096
AY813963_1(AY813963|pid:none) Schistosoma japonicum SJCHGC06094 ... 40 0.096
BT035302_1(BT035302|pid:none) Zea mays full-length cDNA clone ZM... 40 0.096
BT068198_1(BT068198|pid:none) Zea mays full-length cDNA clone ZM... 40 0.096
BC017878_1(BC017878|pid:none) Homo sapiens ring finger protein 1... 40 0.096
BX538350_71(BX538350|pid:none) Cryptosporidium parvum chromosome... 40 0.096
AY735516_1(AY735516|pid:none) Arabidopsis thaliana hypothetical ... 40 0.096
AK090771_1(AK090771|pid:none) Homo sapiens cDNA FLJ33452 fis, cl... 40 0.096
DQ059122_1(DQ059122|pid:none) Arabidopsis thaliana RING finger f... 40 0.096
BT042477_1(BT042477|pid:none) Zea mays full-length cDNA clone ZM... 40 0.096
AB463234_1(AB463234|pid:none) Synthetic construct DNA, clone: pF... 40 0.096
AP003104_9(AP003104|pid:none) Oryza sativa Japonica Group genomi... 40 0.096
AJ720511_1(AJ720511|pid:none) Gallus gallus mRNA for hypothetica... 40 0.096
(O43567) RecName: Full=RING finger protein 13; &(Q5RCV8) RecNam... 40 0.096
EU965072_1(EU965072|pid:none) Zea mays clone 283598 RING-H2 fing... 40 0.096
AK068144_1(AK068144|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.096
AL161538_17(AL161538|pid:none) Arabidopsis thaliana DNA chromoso... 40 0.096
BT059560_1(BT059560|pid:none) Salmo salar clone ssal-rgf-532-263... 40 0.096
BT033340_1(BT033340|pid:none) Zea mays full-length cDNA clone ZM... 40 0.096
FB746686_1(FB746686|pid:none) Sequence 153 from Patent EP1903111. 40 0.096
AL080318_3(AL080318|pid:none) Arabidopsis thaliana DNA chromosom... 40 0.096
BT054768_1(BT054768|pid:none) Zea mays full-length cDNA clone ZM... 40 0.096
(Q90972) RecName: Full=RING finger protein 13; AltName: Full=C-R... 40 0.096
AP000836_16(AP000836|pid:none) Oryza sativa Japonica Group genom... 40 0.096
AP005511_7(AP005511|pid:none) Oryza sativa Japonica Group genomi... 40 0.096
BC159083_1(BC159083|pid:none) Xenopus tropicalis hypothetical pr... 39 0.13
AP004777_17(AP004777|pid:none) Oryza sativa Japonica Group genom... 39 0.13
EU967964_1(EU967964|pid:none) Zea mays clone 311994 unknown mRNA. 39 0.13
AY168924_1(AY168924|pid:none) Arabidopsis thaliana RES protein (... 39 0.13
AK096397_1(AK096397|pid:none) Homo sapiens cDNA FLJ39078 fis, cl... 39 0.13
AC131248_21(AC131248|pid:none) Medicago truncatula clone mth2-28... 39 0.13
AK099917_1(AK099917|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.13
AC148486_14(AC148486|pid:none) Medicago truncatula clone mth2-56... 39 0.13
AP008207_2104(AP008207|pid:none) Oryza sativa (japonica cultivar... 39 0.13
AL844504_293(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.13
(Q9ULT6) RecName: Full=Zinc/RING finger protein 3; AltName: Full... 39 0.13
AJ564266_1(AJ564266|pid:none) Yarrowia lipolytica hrd1 gene. 39 0.13
BC087449_1(BC087449|pid:none) Xenopus laevis KF-1b, mRNA (cDNA c... 39 0.13
CP001329_520(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 39 0.13
AC008007_10(AC008007|pid:none) Genomic sequence for Arabidopsis ... 39 0.13
FN357418_27(FN357418|pid:none) Schistosoma mansoni genome sequen... 39 0.13
BT071472_1(BT071472|pid:none) Picea sitchensis clone WS02915_D15... 39 0.13
BT020580_1(BT020580|pid:none) Arabidopsis thaliana At1g53190 gen... 39 0.13
FN357418_28(FN357418|pid:none) Schistosoma mansoni genome sequen... 39 0.13
EF145460_1(EF145460|pid:none) Populus trichocarpa clone WS01125_... 39 0.13
AB017069_2(AB017069|pid:none) Arabidopsis thaliana genomic DNA, ... 39 0.13
AK229146_1(AK229146|pid:none) Arabidopsis thaliana mRNA for hypo... 39 0.13
AB051436_1(AB051436|pid:none) Homo sapiens mRNA for KIAA1133 pro... 39 0.13
AB384120_1(AB384120|pid:none) Synthetic construct DNA, clone: pF... 39 0.13
AP005511_6(AP005511|pid:none) Oryza sativa Japonica Group genomi... 39 0.13
EU957647_1(EU957647|pid:none) Zea mays clone 1600948 C-terminal ... 39 0.13
FN313965_1(FN313965|pid:none) Schistosoma japonicum isolate Anhu... 39 0.16
AM502235_4(AM502235|pid:none) Leishmania infantum chromosome 17. 39 0.16
AL049638_22(AL049638|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.16
AC126787_18(AC126787|pid:none) Medicago truncatula clone mth2-11... 39 0.16
AM435616_1(AM435616|pid:none) Vitis vinifera contig VV78X043637.... 39 0.16
AB168227_1(AB168227|pid:none) Macaca fascicularis testis cDNA cl... 39 0.16
T49859(T49859)hypothetical protein B24P11.150 [imported] - Neuro... 39 0.16
EU976563_1(EU976563|pid:none) Zea mays clone 983610 RING-H2 fing... 39 0.16
AK133342_1(AK133342|pid:none) Mus musculus adult male testis cDN... 39 0.16
AK073650_1(AK073650|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.16
(Q9FKX5) RecName: Full=RING-H2 finger protein ATL5P; &AB011474_... 39 0.16
BT053787_1(BT053787|pid:none) Zea mays full-length cDNA clone ZM... 39 0.16
AK069011_1(AK069011|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.16
BT059506_1(BT059506|pid:none) Salmo salar clone ssal-rgf-518-310... 39 0.16
FB817274_1(FB817274|pid:none) Sequence 36547 from Patent WO20080... 39 0.16
AC024812_2(AC024812|pid:none) Caenorhabditis elegans cosmid Y54E... 39 0.16
AK314180_1(AK314180|pid:none) Homo sapiens cDNA, FLJ94902, highl... 39 0.16
BT056206_1(BT056206|pid:none) Zea mays full-length cDNA clone ZM... 39 0.16
BT062519_1(BT062519|pid:none) Zea mays full-length cDNA clone ZM... 39 0.16
CR382131_1286(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 39 0.16
CR380948_212(CR380948|pid:none) Candida glabrata strain CBS138 c... 39 0.16
AC183494_3(AC183494|pid:none) Brassica oleracea Contig C, comple... 39 0.16
(Q5SSZ7) RecName: Full=Zinc/RING finger protein 3; Flags: Precur... 39 0.16
DQ812520_2(DQ812520|pid:none) Spironucleus barkhanus isolate Sp3... 39 0.16
(O00237) RecName: Full=RING finger protein 103; AltName: Full=Zi... 39 0.16
AY813144_1(AY813144|pid:none) Schistosoma japonicum SJCHGC05585 ... 39 0.16
BC151080_1(BC151080|pid:none) Mus musculus zinc and ring finger ... 39 0.16
AB020742_8(AB020742|pid:none) Arabidopsis thaliana genomic DNA, ... 39 0.16
AP003760_20(AP003760|pid:none) Oryza sativa Japonica Group genom... 39 0.16
A86323(A86323) protein F14D16.3 [imported] - Arabidopsis thalian... 39 0.16
EU968128_1(EU968128|pid:none) Zea mays clone 314895 RING-H2 fing... 39 0.21
EU965227_1(EU965227|pid:none) Zea mays clone 284641 hypothetical... 39 0.21
AC129090_8(AC129090|pid:none) Medicago truncatula clone mth2-14i... 39 0.21
AM494954_4(AM494954|pid:none) Leishmania braziliensis chromosome... 39 0.21
(Q3U2C5) RecName: Full=E3 ubiquitin-protein ligase RNF149; ... 39 0.21
AC079022_20(AC079022|pid:none) Oryza sativa chromosome 5 clone P... 39 0.21
AL663003_5(AL663003|pid:none) Oryza sativa genomic DNA, chromoso... 39 0.21
BT042710_1(BT042710|pid:none) Zea mays full-length cDNA clone ZM... 39 0.21
AP008211_65(AP008211|pid:none) Oryza sativa (japonica cultivar-g... 39 0.21
EF677666_1(EF677666|pid:none) Picea sitchensis clone WS02772_L03... 39 0.21
EU966227_1(EU966227|pid:none) Zea mays clone 292713 RING-H2 fing... 39 0.21
AY057571_1(AY057571|pid:none) Arabidopsis thaliana AT4g23450/F16... 39 0.21
AC079356_2(AC079356|pid:none) Oryza sativa (japonica cultivar-gr... 39 0.21
AY035147_1(AY035147|pid:none) Arabidopsis thaliana unknown prote... 39 0.21
AC005724_5(AC005724|pid:none) Arabidopsis thaliana chromosome 2 ... 39 0.21
AY084564_1(AY084564|pid:none) Arabidopsis thaliana clone 112003 ... 39 0.21
AE014298_2901(AE014298|pid:none) Drosophila melanogaster chromos... 39 0.21
FN313814_1(FN313814|pid:none) Schistosoma japonicum isolate Anhu... 39 0.21
AK029824_1(AK029824|pid:none) Mus musculus adult male testis cDN... 39 0.21
EF134067_1(EF134067|pid:none) Perkinsus marinus isolate Pma_cDNA... 39 0.21
(Q6NQG7) RecName: Full=RING-H2 finger protein ATL1L; &AK176235_... 39 0.21
AL031326_15(AL031326|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.21
AY069600_1(AY069600|pid:none) Drosophila melanogaster LD35343 fu... 39 0.21
(A8Y4B2) RecName: Full=E3 ubiquitin-protein ligase hrd-1; AltNam... 39 0.21
FM992689_610(FM992689|pid:none) Candida dubliniensis CD36 chromo... 39 0.21

>(Q08CN9) RecName: Full=E3 ubiquitin-protein ligase ZNRF2;
EC=6.3.2.-; AltName: Full=Zinc/RING finger protein 2;
&BC124159_1(BC124159|pid:none)
Length = 217

Score = 64.3 bits (155), Expect = 4e-09
Identities = 33/88 (37%), Positives = 46/88 (52%)
Frame = +3

Query: 435 YKCPLCNEKSPNLISHLSKTHIRVQQKQVGVGYSTSVLENDLSEDIECPICLEEFTKGQN 614
+KCP+C S + S H+ + + V Y+ VL D E C ICLEE +G
Sbjct: 133 FKCPVC---SKFISSDEMDLHLVMCLTKPRVTYNEDVLSKDAGE---CAICLEELLQGDT 186

Query: 615 VARLECWCIFHTNCISEYLLKSKKCPVH 698
+ARL C CI+H CI E+ ++ CP H
Sbjct: 187 IARLPCLCIYHKGCIDEWFEVNRSCPEH 214

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,044,141,979
Number of extensions: 20193009
Number of successful extensions: 54588
Number of sequences better than 10.0: 1165
Number of HSP's gapped: 54282
Number of HSP's successfully gapped: 1183
Length of query: 243
Length of database: 1,040,966,779
Length adjustment: 125
Effective length of query: 118
Effective length of database: 640,431,154
Effective search space: 75570876172
Effective search space used: 75570876172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.71 gvh: 0.43 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U09813-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0