>Contig-U09811-1 (Contig-U09811-1Q) /CSM_Contig/Contig-U09811-1Q.Seq.d
TAATACACCTTTCATTAGTGGTATGGATCTCATTGGTGCTAGCGTTGCAA
CTGATGATTTTTTAGTTGTTGGTACTATGACTCCTGCAATGTATGGTGTT
TGTGAAACTTTATACAAAAAAGATATGAATGAAGATGATCTTTTTGAAAC
TATTTCACAATGTATGTTAGCAAGTTTAGATAGAGATGCTCTTTCTGGTT
GGGGTGCCATTGTTCATGTAATTACTCCAACTCAAGTTATCACAAAGAAA
TTATTAGGTCGTCAAGATTAAACAAAACAAATACTAAAAATAAAAATAAA
AAGAATAAAAAAANATTAAAAAATAAAAAAAAAAANTAAAAAAAAAANAT
TTTTTTTTAAANTCCNAAAAAAAA----------TTTGGGGGCCNTTGNT
CATGTAANNANCCCAACNCAAGNNANCNNAAAAAAAATAANAGGTCGTCA
ANATTAAANAAAANAAAAACTAAAAATNNAAATAAAAAGAATAAAAAAAA
ATTAAAAAATAAAAAAAAANAATAAAAAAAAAAA

est1=VSI510F,1,375
est2=VSI510Z,376,526

ntpfisgmdligasvatddflvvgtmtpamygvcetlykkdmneddlfetisqcmlasld
rdalsgwgaivhvitptqvitkkllgrqd*tkqilkikikrikkx*KIKKKXKKKXFFFK
XXKK---

---FGGXXSCXXPNXXXXKKNXRSSXLXKXKTKNXNKKNKKKLKNKKKX*kkk

Frame A:
*ytfh*wygshwc*rcn**ffscwyydscnvwcl*nfiqkrye*r*sf*nyftmyvskfr
*rcsfwlgchcscnysnssyhkeiirssrlnktntknknkknkkxlknkkkx*kkxiff*
xpkk---

---FGGXXSCXXPNXXXXKKNXRSSXLXKXKTKNXNKKNKKKLKNKKKX*kkk

Frame B:
ntpfisgmdligasvatddflvvgtmtpamygvcetlykkdmneddlfetisqcmlasld
rdalsgwgaivhvitptqvitkkllgrqd*tkqilkikikrikkx*KIKKKXKKKXFFFK
XXKK---

---lgaxxhvxxptqxxxkkixgrqx*xkxklkxxikrikkn*kikkxnkkk

Frame C:
ihlslvvwislvlalqlmif*llvl*llqcmvfvklytkki*mkmiflklfhnvc*qv*i
emlflvgvplfm*llqlklsqrny*vvkikqnky*k*k*ke*kxikk*kkkxkkkxfflx
sxkk---

---wgplxm*xxqxkxxxkk*xvvxikxxkn*kxk*ke*kkikk*kkxikkk

Query= Contig-U09811-1 (Contig-U09811-1Q)
/CSM_Contig/Contig-U09811-1Q.Seq.d
         (534 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09811-1 (Contig-U09811-1Q) /CSM_Contig/Conti...   531  e-151
Contig-U13055-1 (Contig-U13055-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12493-1 (Contig-U12493-1Q) /CSM_Contig/Conti...    36  0.037
Contig-U11866-1 (Contig-U11866-1Q) /CSM_Contig/Conti...    36  0.037
Contig-U10766-1 (Contig-U10766-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U14907-1 (Contig-U14907-1Q) /CSM_Contig/Conti...    32  0.58
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti...    32  0.58
Contig-U13527-1 (Contig-U13527-1Q) /CSM_Contig/Conti...    32  0.58
Contig-U12231-1 (Contig-U12231-1Q) /CSM_Contig/Conti...    32  0.58
Contig-U10182-1 (Contig-U10182-1Q) /CSM_Contig/Conti...    32  0.58

>Contig-U09811-1 (Contig-U09811-1Q) /CSM_Contig/Contig-U09811-1Q.Seq.d
          Length = 534

 Score =  531 bits (268), Expect = e-151
 Identities = 268/268 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatacacctttcattagtggtatggatctcattggtgctagcgttgcaactgatgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taatacacctttcattagtggtatggatctcattggtgctagcgttgcaactgatgattt 60

                                                                       
Query: 61  tttagttgttggtactatgactcctgcaatgtatggtgtttgtgaaactttatacaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttagttgttggtactatgactcctgcaatgtatggtgtttgtgaaactttatacaaaaa 120

                                                                       
Query: 121 agatatgaatgaagatgatctttttgaaactatttcacaatgtatgttagcaagtttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agatatgaatgaagatgatctttttgaaactatttcacaatgtatgttagcaagtttaga 180

                                                                       
Query: 181 tagagatgctctttctggttggggtgccattgttcatgtaattactccaactcaagttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagagatgctctttctggttggggtgccattgttcatgtaattactccaactcaagttat 240

                                       
Query: 241 cacaaagaaattattaggtcgtcaagat 268
           ||||||||||||||||||||||||||||
Sbjct: 241 cacaaagaaattattaggtcgtcaagat 268


>Contig-U13055-1 (Contig-U13055-1Q) /CSM_Contig/Contig-U13055-1Q.Seq.d
          Length = 202

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 95  ggtgtttgtgaaactttatacaaaaaa 121
           ||||| ||||||||| |||||||||||
Sbjct: 29  ggtgtgtgtgaaactatatacaaaaaa 3


>Contig-U12493-1 (Contig-U12493-1Q) /CSM_Contig/Contig-U12493-1Q.Seq.d
          Length = 1640

 Score = 36.2 bits (18), Expect = 0.037
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 52  tgatgattttttagttgt 69
           ||||||||||||||||||
Sbjct: 888 tgatgattttttagttgt 871


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2812
Number of Sequences: 6905
Number of extensions: 2812
Number of successful extensions: 300
Number of sequences better than 10.0: 89
length of query: 534
length of database: 5,674,871
effective HSP length: 16
effective length of query: 518
effective length of database: 5,564,391
effective search space: 2882354538
effective search space used: 2882354538
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U09811-1 (Contig-U09811-1Q) /CSM_Contig/Contig-U09811-1Q.Seq.d
         (534 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268805) Dictyostelium discoideum vegetative cDNA clone:VS...   531   e-147  1
(ES641772) NVPPA18TR NVPP Nasonia vitripennis cDNA, mRNA seq...    66   9e-12  2
(EB079224) EST1229846 Nasonia vitripennis (wasp) pre-pupal E...    66   9e-12  2
(EB079777) EST1230399 Nasonia vitripennis (wasp) pre-pupal E...    66   9e-12  2
(ES645193) NVPR134TR NVPP Nasonia vitripennis cDNA, mRNA seq...    66   9e-12  2
(ES648168) NVPSC89TR NVPP Nasonia vitripennis cDNA, mRNA seq...    66   9e-12  2
(EB080214) EST1230836 Nasonia vitripennis (wasp) pre-pupal E...    66   9e-12  2
(ES622652) NGPEV18TR NGPA Nasonia giraulti cDNA, mRNA sequence.    66   9e-12  2
(ES650921) NVPTQ02TR NVPP Nasonia vitripennis cDNA, mRNA seq...    66   9e-12  2
(EB080604) EST1231226 Nasonia vitripennis (wasp) pre-pupal E...    66   9e-12  2
(ES619424) NGPD029TR NGPA Nasonia giraulti cDNA, mRNA sequence.    66   9e-12  2
(ES647885) NVPS853TR NVPP Nasonia vitripennis cDNA, mRNA seq...    66   1e-06  1
(EB080164) EST1230786 Nasonia vitripennis (wasp) pre-pupal E...    66   1e-06  1
(EV431232) 210805891 NVP Nasonia vitripennis cDNA clone 217E...    66   1e-06  1
(EV422884) 210809870 NGP Nasonia giraulti cDNA clone 141M3 3...    66   1e-06  1
(EV421966) 210804121 NGP Nasonia giraulti cDNA clone 141M3 5...    66   1e-06  1
(FE264959) CAZO4175.fwd CAZO Naegleria gruberi Flagellate St...    54   2e-06  2
(FE258045) CAPH694.fwd CAPH Naegleria gruberi amoeba stage N...    54   2e-06  2
(FE248955) CAPH1999.fwd CAPH Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE232184) CAPG1616.fwd CAPG Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE232183) CAPG1616.rev CAPG Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE264958) CAZO4175.rev CAZO Naegleria gruberi Flagellate St...    54   2e-06  2
(FE258044) CAPH694.rev CAPH Naegleria gruberi amoeba stage N...    54   2e-06  2
(FE254446) CAPH5060.rev CAPH Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE254447) CAPH5060.fwd CAPH Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE268655) CAZO6882.rev CAZO Naegleria gruberi Flagellate St...    54   2e-06  2
(FE265796) CAZO4717.fwd CAZO Naegleria gruberi Flagellate St...    54   2e-06  2
(FE265795) CAZO4717.rev CAZO Naegleria gruberi Flagellate St...    54   2e-06  2
(FE248954) CAPH1999.rev CAPH Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE254066) CAPH4865.rev CAPH Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE254067) CAPH4865.fwd CAPH Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE268656) CAZO6882.fwd CAZO Naegleria gruberi Flagellate St...    54   2e-06  2
(FE250439) CAPH2852.fwd CAPH Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE250438) CAPH2852.rev CAPH Naegleria gruberi amoeba stage ...    54   2e-06  2
(FE267538) CAZO6187.rev CAZO Naegleria gruberi Flagellate St...    54   2e-06  2
(FC639233) CAXU3717.fwd CAXU Lottia gigantea from female gon...    50   1e-05  3
(FC783851) CBGC14608.fwd CBGC Lottia gigantea 15h 18h embryo...    50   1e-05  3
(FC669008) CAXW6742.rev CAXW Lottia gigantea from female gon...    50   1e-05  3
(FC704593) CAXY2666.fwd CAXY Lottia gigantea from male gonad...    50   1e-05  3
(FC741669) CBBI12609.rev CBBI Lottia gigantea 26h,37h,61h La...    50   1e-05  3
(FC805232) CBGC6998.fwd CBGC Lottia gigantea 15h 18h embryos...    50   1e-05  3
(FC780573) CBGC12530.fwd CBGC Lottia gigantea 15h 18h embryo...    50   2e-05  3
(FC658418) CAXW15950.rev CAXW Lottia gigantea from female go...    50   2e-05  3
(FC741670) CBBI12609.fwd CBBI Lottia gigantea 26h,37h,61h La...    50   2e-05  3
(FC657762) CAXW15581.rev CAXW Lottia gigantea from female go...    50   2e-05  3
(FC714406) CAXY8851.fwd CAXY Lottia gigantea from male gonad...    50   2e-05  3
(FC714405) CAXY8851.rev CAXY Lottia gigantea from male gonad...    50   2e-05  3
(FC658419) CAXW15950.fwd CAXW Lottia gigantea from female go...    50   2e-05  3
(FC716010) CBBG10519.fwd CBBG Lottia gigantea 12,15,18h embr...    50   2e-05  3
(FC783850) CBGC14608.rev CBGC Lottia gigantea 15h 18h embryo...    50   2e-05  3
(FC720599) CBBG13522.rev CBBG Lottia gigantea 12,15,18h embr...    50   2e-05  3
(FC633235) CAXT8596.rev CAXT Lottia gigantea from mantle Lot...    50   2e-05  3
(FC704592) CAXY2666.rev CAXY Lottia gigantea from male gonad...    50   2e-05  3
(FC597286) CAXS10366.rev CAXS Lottia gigantea from head, foo...    50   2e-05  3
(FC615198) CAXS7564.rev CAXS Lottia gigantea from head, foot...    50   2e-05  3
(FC615199) CAXS7564.fwd CAXS Lottia gigantea from head, foot...    50   2e-05  3
(FC720600) CBBG13522.fwd CBBG Lottia gigantea 12,15,18h embr...    50   2e-05  3
(FC597287) CAXS10366.fwd CAXS Lottia gigantea from head, foo...    50   2e-05  3
(FC734852) CBBG9259.fwd CBBG Lottia gigantea 12,15,18h embry...    50   2e-05  3
(FC707841) CAXY4902.rev CAXY Lottia gigantea from male gonad...    50   2e-05  3
(FC707842) CAXY4902.fwd CAXY Lottia gigantea from male gonad...    50   2e-05  3
(FC627818) CAXT5743.rev CAXT Lottia gigantea from mantle Lot...    50   2e-05  2
(FC719254) CBBG12658.fwd CBBG Lottia gigantea 12,15,18h embr...    50   2e-05  2
(FC719253) CBBG12658.rev CBBG Lottia gigantea 12,15,18h embr...    50   2e-05  2
(FC627819) CAXT5743.fwd CAXT Lottia gigantea from mantle Lot...    50   2e-05  2
(DB775065) Apis mellifera head cDNA, RIKEN full-length enric...    40   3e-04  2
(FC734851) CBBG9259.rev CBBG Lottia gigantea 12,15,18h embry...    44   8e-04  3
(FE369889) CBNP1292.rev CBNP_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE416227) CBTW1784.rev CBTW_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE357059) CBNN16534.rev CBNN_Daphnia_pulex_Chosen_One_Libra...    36   0.017  2
(FE416228) CBTW1784.fwd CBTW_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE349589) CBIB8546.rev CBIB_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE356000) CBIC9584.rev CBIC_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE420780) CBTX2118.rev CBTX_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE349590) CBIB8546.fwd CBIB_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE418538) CBTW3289.fwd CBTW_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE418537) CBTW3289.rev CBTW_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE306900) CANS2579.fwd CANS_Daphnia_pulex_Log50_Library_3 D...    36   0.017  2
(FE347617) CBIB732.rev CBIB_Daphnia_pulex_Chosen_One_Library...    36   0.017  2
(FE419643) CBTW4013.rev CBTW_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE307507) CANS800.fwd CANS_Daphnia_pulex_Log50_Library_3 Da...    36   0.017  2
(FE307506) CANS800.rev CANS_Daphnia_pulex_Log50_Library_3 Da...    36   0.017  2
(FE309587) CANU1950.rev CANU_Daphnia_pulex_Log50_Library_7 D...    36   0.017  2
(FE309588) CANU1950.fwd CANU_Daphnia_pulex_Log50_Library_7 D...    36   0.017  2
(FE419993) CBTX1554.rev CBTX_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE311109) CANU2952.fwd CANU_Daphnia_pulex_Log50_Library_7 D...    36   0.017  2
(FE311108) CANU2952.rev CANU_Daphnia_pulex_Log50_Library_7 D...    36   0.017  2
(FE345773) CBIB6220.fwd CBIB_Daphnia_pulex_Chosen_One_Librar...    36   0.017  2
(FE281486) CANF609.fwd CANF_Daphnia_pulex_Log50_Library_10 D...    36   0.017  2
(FE313704) CANU4561.fwd CANU_Daphnia_pulex_Log50_Library_7 D...    36   0.018  2
(FE289010) CANH5062.fwd CANH_Daphnia_pulex_Log50_Library_21 ...    36   0.018  2
(FE287628) CANH4342.fwd CANH_Daphnia_pulex_Log50_Library_21 ...    36   0.018  2
(FE287627) CANH4342.rev CANH_Daphnia_pulex_Log50_Library_21 ...    36   0.018  2
(EC821515) SME00003664 esmbsro2 Sawyeria marylandensis cDNA,...    52   0.021  1
(EC821406) SME00009072 esmbsro2 Sawyeria marylandensis cDNA,...    52   0.021  1
(CR940353) Theileria annulata genomic DNA chromosome 4.            40   0.045  2
(EW996877) 3017HAEMEX15F7 BgSSH (R-S) schistosome-exposed NH...    38   0.065  2
(FE320962) CANX2474.fwd CANX_Daphnia_pulex_Log50_Library_8 D...    36   0.24   2
(FE320961) CANX2474.rev CANX_Daphnia_pulex_Log50_Library_8 D...    36   0.24   2
(AG455576) Mus musculus molossinus DNA, clone:MSMg01-341O06....    48   0.32   1

>(AU268805) Dictyostelium discoideum vegetative cDNA clone:VSI510,
           5' end single read.
          Length = 375

 Score =  531 bits (268), Expect = e-147
 Identities = 268/268 (100%)
 Strand = Plus / Plus


Query: 1   taatacacctttcattagtggtatggatctcattggtgctagcgttgcaactgatgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taatacacctttcattagtggtatggatctcattggtgctagcgttgcaactgatgattt 60


Query: 61  tttagttgttggtactatgactcctgcaatgtatggtgtttgtgaaactttatacaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttagttgttggtactatgactcctgcaatgtatggtgtttgtgaaactttatacaaaaa 120


Query: 121 agatatgaatgaagatgatctttttgaaactatttcacaatgtatgttagcaagtttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agatatgaatgaagatgatctttttgaaactatttcacaatgtatgttagcaagtttaga 180


Query: 181 tagagatgctctttctggttggggtgccattgttcatgtaattactccaactcaagttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagagatgctctttctggttggggtgccattgttcatgtaattactccaactcaagttat 240


Query: 241 cacaaagaaattattaggtcgtcaagat 268
           ||||||||||||||||||||||||||||
Sbjct: 241 cacaaagaaattattaggtcgtcaagat 268

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 316,356,788
Number of extensions: 17801373
Number of successful extensions: 1549217
Number of sequences better than 10.0: 137
Length of query: 534
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 511
Effective length of database: 93,106,754,628
Effective search space: 47577551614908
Effective search space used: 47577551614908
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U09811-1 (Contig-U09811-1Q) /CSM_Contig/Contig-U09811-1Q.Seq.d
         (534 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55D66) RecName: Full=Proteasome subunit beta type-3;          ...   181   8e-45
AY542982_1(AY542982|pid:none) Bigelowiella natans proteasome bet...   108   1e-22
AM910984_53(AM910984|pid:none) Plasmodium knowlesi strain H chro...   106   3e-22
CR940353_558(CR940353|pid:none) Theileria annulata strain Ankara...   105   5e-22
(O65084) RecName: Full=Proteasome subunit beta type-3;          ...   105   9e-22
AL031745_71(AL031745|pid:none) Plasmodium falciparum DNA from MA...   103   3e-21
AC124964_5(AC124964|pid:none) Medicago truncatula clone mth2-27c...   102   5e-21
BT053312_1(BT053312|pid:none) Medicago truncatula clone MTYFP_FQ...   102   5e-21
BT081157_1(BT081157|pid:none) Caligus clemensi clone ccle-evs-51...   102   5e-21
BT076678_1(BT076678|pid:none) Caligus rogercresseyi clone crog-e...   102   6e-21
BT076584_1(BT076584|pid:none) Caligus rogercresseyi clone crog-e...   102   8e-21
(Q9XI05) RecName: Full=Proteasome subunit beta type-3-A;        ...   102   8e-21
(O81153) RecName: Full=Proteasome subunit beta type-3-B;        ...   100   2e-20
AC010704_3(AC010704|pid:none) Arabidopsis thaliana chromosome 1 ...   100   2e-20
(Q9Y7T8) RecName: Full=Probable proteasome subunit beta type-3; ...   100   2e-20
BC049010_1(BC049010|pid:none) Danio rerio proteasome (prosome, m...   100   3e-20
AP006852_313(AP006852|pid:none) Candida albicans genomic DNA, ch...   100   3e-20
BC087395_1(BC087395|pid:none) Xenopus laevis hypothetical LOC496...   100   4e-20
(P33672) RecName: Full=Proteasome subunit beta type-3;          ...    99   7e-20
(P49720) RecName: Full=Proteasome subunit beta type-3;          ...    99   9e-20
D26598_1(D26598|pid:none) Homo sapiens mRNA for proteasome subun...    99   9e-20
AY893167_1(AY893167|pid:none) Synthetic construct Homo sapiens c...    99   9e-20
CU928174_130(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    98   1e-19
(Q9R1P1) RecName: Full=Proteasome subunit beta type-3;          ...    98   1e-19
EF147577_1(EF147577|pid:none) Populus trichocarpa clone WS0123_J...    98   1e-19
BT043750_1(BT043750|pid:none) Salmo salar clone HM6_0807 proteas...    97   2e-19
(O73817) RecName: Full=Proteasome subunit beta type-3;          ...    97   3e-19
(Q9LST7) RecName: Full=Proteasome subunit beta type-3;          ...    97   3e-19
(P25451) RecName: Full=Proteasome component PUP3;          EC=3....    97   3e-19
AE017341_360(AE017341|pid:none) Cryptococcus neoformans var. neo...    97   3e-19
CR380955_203(CR380955|pid:none) Candida glabrata strain CBS138 c...    96   4e-19
DQ215169_1(DQ215169|pid:none) Taeniopygia guttata clone 0058P000...    96   6e-19
AE016815_431(AE016815|pid:none) Ashbya gossypii (= Eremothecium ...    96   6e-19
DQ215167_1(DQ215167|pid:none) Taeniopygia guttata clone 0061P001...    96   6e-19
BT074340_1(BT074340|pid:none) Oncorhynchus mykiss clone omyk-evo...    96   7e-19
BT042379_1(BT042379|pid:none) Zea mays full-length cDNA clone ZM...    96   7e-19
BT049797_1(BT049797|pid:none) Salmo salar clone ssal-eve-520-080...    95   1e-18
CU928167_286(CU928167|pid:none) Kluyveromyces thermotolerans str...    95   1e-18
CR954201_525(CR954201|pid:none) Ostreococcus tauri strain OTTH05...    94   2e-18
BT078418_1(BT078418|pid:none) Lepeophtheirus salmonis clone lsal...    94   2e-18
FN376305_4(FN376305|pid:none) Schistosoma mansoni genome sequenc...    93   4e-18
AM270071_1(AM270071|pid:none) Aspergillus niger contig An04c0100...    93   4e-18
AP007157_740(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    93   4e-18
CR382132_935(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    93   4e-18
DQ440107_1(DQ440107|pid:none) Aedes aegypti clone AE-448 20S pro...    92   6e-18
CP000581_543(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    92   8e-18
AM920437_1882(AM920437|pid:none) Penicillium chrysogenum Wiscons...    92   8e-18
AY812859_1(AY812859|pid:none) Schistosoma japonicum SJCHGC02212 ...    91   2e-17
FN317086_1(FN317086|pid:none) Schistosoma japonicum isolate Anhu...    91   2e-17
FN317058_1(FN317058|pid:none) Schistosoma japonicum isolate Anhu...    91   2e-17
FN376305_5(FN376305|pid:none) Schistosoma mansoni genome sequenc...    90   4e-17
AL590442_34(AL590442|pid:none) chromosome II of strain GB-M1 of ...    89   7e-17
AY814090_1(AY814090|pid:none) Schistosoma japonicum clone SJCHGC...    87   3e-16
CP000881_126(CP000881|pid:none) Hemiselmis andersenii chromosome...    85   1e-15
(Q23237) RecName: Full=Proteasome subunit beta type-3;          ...    81   1e-14
DQ120693_1(DQ120693|pid:none) Pan troglodytes rcPSMB3 gene, part...    80   4e-14
AM494965_12(AM494965|pid:none) Leishmania braziliensis chromosom...    79   5e-14
DQ120694_1(DQ120694|pid:none) Gorilla gorilla rcPSMB3 gene, part...    79   5e-14
AY223415_1(AY223415|pid:none) Schistosoma japonicum clone ZZZ362...    78   1e-13
CT005266_11(CT005266|pid:none) Leishmania major strain Friedlin,...    78   2e-13
DQ120692_1(DQ120692|pid:none) Homo sapiens rcPSMB3 gene, partial...    74   3e-12
AJ291739_1(AJ291739|pid:none) Nicotiana tabacum partial mRNA for...    72   7e-12
AF508264_1(AF508264|pid:none) Pyrocystis lunula beta 3 subunit o...    72   9e-12
EZ000231_1(EZ000231|pid:none) TSA: Amblyomma americanum Contig64...    71   2e-11
BT065339_1(BT065339|pid:none) Zea mays full-length cDNA clone ZM...    62   7e-09
(Q9N9W8) RecName: Full=Proteasome subunit beta type-3;          ...    61   2e-08
CP000780_1378(CP000780|pid:none) Candidatus Methanoregula boonei...    51   2e-05
B72749(B72749)probable proteasome, beta subunit APE0521 - Aeropy...    46   5e-04
BA000002_385(BA000002|pid:none) Aeropyrum pernix K1 DNA, complet...    46   5e-04
CP000493_1504(CP000493|pid:none) Hyperthermus butylicus DSM 5456...    45   9e-04
CP000254_817(CP000254|pid:none) Methanospirillum hungatei JF-1, ...    45   0.001
CP000559_1006(CP000559|pid:none) Methanocorpusculum labreanum Z,...    44   0.003
AM114193_795(AM114193|pid:none) Uncultured methanogenic archaeon...    44   0.003
AE017261_686(AE017261|pid:none) Picrophilus torridus DSM 9790, c...    42   0.013
EU016648_6(EU016648|pid:none) Uncultured Group I marine crenarch...    41   0.021
(P28061) RecName: Full=Proteasome subunit beta;          EC=3.4....    40   0.037
CP000477_82(CP000477|pid:none) Methanosaeta thermophila PT, comp...    40   0.037
CP000968_1396(CP000968|pid:none) Candidatus Korarchaeum cryptofi...    40   0.048
AX886012_1(AX886012|pid:none) Sequence 1875 from Patent EP1033401.     40   0.048
CP000866_690(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c...    40   0.048
CR382135_513(CR382135|pid:none) Debaryomyces hansenii strain CBS...    39   0.062
(Q58634) RecName: Full=Proteasome subunit beta;          EC=3.4....    39   0.062
(O27270) RecName: Full=Proteasome subunit beta;          EC=3.4....    39   0.062
CP000968_1447(CP000968|pid:none) Candidatus Korarchaeum cryptofi...    38   0.18
CR936257_1727(CR936257|pid:none) Natronomonas pharaonis DSM 2160...    38   0.18
CP000743_49(CP000743|pid:none) Methanococcus aeolicus Nankai-3, ...    38   0.18
AY596297_390(AY596297|pid:none) Haloarcula marismortui ATCC 4304...    37   0.24
BT052680_1(BT052680|pid:none) Medicago truncatula clone MTYFD_FE...    37   0.31
AB162342_3(AB162342|pid:none) Oncorhynchus mykiss genes, MHC cla...    37   0.40
AC126782_16(AC126782|pid:none) Medicago truncatula clone mth2-14...    37   0.40
AF115539_1(AF115539|pid:none) Oncorhynchus mykiss proteasome del...    37   0.40
AF115540_1(AF115540|pid:none) Oncorhynchus mykiss low molecular ...    37   0.40
AE008384_694(AE008384|pid:none) Methanosarcina mazei strain Goe1...    37   0.40
BT048567_1(BT048567|pid:none) Salmo salar clone ssal-eve-547-090...    37   0.40
AB007024_1(AB007024|pid:none) Dictyostelium discoideum DAPS-1 mR...    36   0.53
FN314983_1(FN314983|pid:none) Schistosoma japonicum isolate Anhu...    36   0.53
AY813054_1(AY813054|pid:none) Schistosoma japonicum SJCHGC05978 ...    36   0.53
CP000745_1705(CP000745|pid:none) Methanococcus maripaludis C7, c...    36   0.53
AB162343_8(AB162343|pid:none) Oncorhynchus mykiss genes, MHC cla...    36   0.53
BC013897_1(BC013897|pid:none) Mus musculus proteasome (prosome, ...    36   0.69
CP000678_1037(CP000678|pid:none) Methanobrevibacter smithii ATCC...    36   0.69
FJ866624_1(FJ866624|pid:none) Citrus maxima 20S proteasome beta ...    35   0.90
AE009441_2536(AE009441|pid:none) Pyrobaculum aerophilum str. IM2...    35   0.90
(Q60692) RecName: Full=Proteasome subunit beta type-6;          ...    35   1.2
FN314982_1(FN314982|pid:none) Schistosoma japonicum isolate Anhu...    35   1.2
U13393_1(U13393|pid:none) Mus musculus delta proteasome subunit ...    35   1.2
BT075454_1(BT075454|pid:none) Osmerus mordax clone omor-eva-510-...    35   1.2
(P28073) RecName: Full=Proteasome subunit beta type-6;          ...    35   1.2
D10754_1(D10754|pid:none) Rattus sp. mRNA for proteasome subunit...    35   1.2
BT047646_1(BT047646|pid:none) Salmo salar clone ssal-evd-504-169...    35   1.2
BT047507_1(BT047507|pid:none) Salmo salar clone ssal-evd-531-051...    35   1.5
CP000660_2140(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135...    34   2.0
AF357920_1(AF357920|pid:none) Ginglymostoma cirratum proteasome ...    34   2.0
CP001014_895(CP001014|pid:none) Thermoproteus neutrophilus V24St...    34   2.0
AE016814_15(AE016814|pid:none) Ashbya gossypii (= Eremothecium g...    34   2.0
AB091095_1(AB091095|pid:none) Theileria orientalis ToPro-1 gene ...    34   2.0
S17522(S17522;S25412;S08188)proteasome endopeptidase complex (EC...    34   2.6
X61971_1(X61971|pid:none) H.sapiens mRNA for macropain subunit d...    34   2.6
(O43063) RecName: Full=Probable proteasome subunit beta type-6; ...    34   2.6
CR954214_3(CR954214|pid:none) Ostreococcus tauri strain OTTH0595...    34   2.6
FM992689_614(FM992689|pid:none) Candida dubliniensis CD36 chromo...    34   2.6
(P30656) RecName: Full=Proteasome component PRE2;          EC=3....    34   2.6
D29012_1(D29012|pid:none) Homo sapiens mRNA for proteasome subun...    34   2.6
(P28072) RecName: Full=Proteasome subunit beta type-6;          ...    34   2.6
D87689_1(D87689|pid:none) Xenopus laevis mRNA for proteasome sub...    33   3.4
AE009441_549(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,...    33   3.4
AP007155_86(AP007155|pid:none) Aspergillus oryzae RIB40 genomic ...    33   3.4
CP001014_52(CP001014|pid:none) Thermoproteus neutrophilus V24Sta...    33   3.4
FN392322_695(FN392322|pid:none) Pichia pastoris GS115 chromosome...    33   3.4
(O23717) RecName: Full=Proteasome subunit beta type-5-A;        ...    33   3.4
AY050871_1(AY050871|pid:none) Arabidopsis thaliana putative prot...    33   3.4
BC169377_1(BC169377|pid:none) Xenopus laevis proteasome (prosome...    33   4.5
AF083031_124(AF083031|pid:none) Guillardia theta nucleomorph chr...    33   4.5
CP000504_1085(CP000504|pid:none) Pyrobaculum islandicum DSM 4184...    33   4.5
CP000077_616(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63...    33   4.5
CP000102_272(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    33   4.5
EF584011_1(EF584011|pid:none) Brassica rapa clone P2 hypothetica...    33   4.5
CP000504_746(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,...    33   5.8
AB246882_1(AB246882|pid:none) Lethenteron japonicum LMPX mRNA fo...    33   5.8
CR382128_597(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    33   5.8
CU633901_357(CU633901|pid:none) Podospora anserina genomic DNA c...    33   5.8
D64055_1(D64055|pid:none) Petromyzon marinus mRNA for LMPX of la...    33   5.8
EF558549_25(EF558549|pid:none) Halorubrum sp. TP009 clone 1 sequ...    33   5.8
AE016818_20(AE016818|pid:none) Ashbya gossypii (= Eremothecium g...    33   5.8
(Q3MHN0) RecName: Full=Proteasome subunit beta type-6;          ...    33   5.8
CP000816_614(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    33   5.8
CP001365_604(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49...    32   7.6
BT049980_1(BT049980|pid:none) Salmo salar clone ssal-eve-539-183...    32   10.0
AF323592_1(AF323592|pid:none) Prunus persica putative 20S protea...    32   10.0
CP000499_447(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    32   10.0

>(Q55D66) RecName: Full=Proteasome subunit beta type-3;
           EC=3.4.25.1;
          Length = 205

 Score =  181 bits (460), Expect = 8e-45
 Identities = 89/89 (100%), Positives = 89/89 (100%)
 Frame = +2

Query: 2   NTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLD 181
           NTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLD
Sbjct: 117 NTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLD 176

Query: 182 RDALSGWGAIVHVITPTQVITKKLLGRQD 268
           RDALSGWGAIVHVITPTQVITKKLLGRQD
Sbjct: 177 RDALSGWGAIVHVITPTQVITKKLLGRQD 205

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 459,344,712
Number of extensions: 7737723
Number of successful extensions: 22274
Number of sequences better than 10.0: 150
Number of HSP's gapped: 22264
Number of HSP's successfully gapped: 150
Length of query: 178
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 58
Effective length of database: 656,452,579
Effective search space: 38074249582
Effective search space used: 38074249582
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

 psg: 0.69  gvh: 0.41  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: mitochondrial
	 12.0 %: cytoplasmic

>> prediction for Contig-U09811-1 is nuc