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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09799-1
Contig ID Contig-U09799-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09799-1 (Contig-U09799-1Q) /CSM_Contig/Contig-U09799-1Q.Seq.d
CAAAAAAAAAAAATAAAAATTNTAAAAAAAATAATTATTTCTTNGTTTTA
ATTCATATNTTCATTCACTCAAATNTTNGATTTAATCAATCTCTTAANTA
AAAAAGGAAAAAAAAA----------TNAAATTTGANTTNNTCNTTCTTT
TAAAAAAAAAAANAAAAAAAAAAAATTATTAATCCATCATCAATCAAAAA
TCAAATTAAAATAATCATAAATTTAAAAAAAAAAATTAATAAAATCAAGA
AAAGCAATCATGATGCCTTTAGAAAGAGAGATATCAACATTGAAACAATA
TTGTTTTCAATATTTATTAAGAAATCATGAAAAGATACCATCAAAAAAAG
TATCACAAATTTATGAAATCTCAGATATTAGAGAAGAATTTATAAGTATG
GCAAAGAAAAAGAATTTAGTGGATGATCAATTCTTTTCAATTTT
Gap gap included
Contig length 434
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2946352
End point 2945976
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09799
List of clone(s) 

est1=VSG142F,1,117
est2=VSG142Z,118,436
Translated Amino Acid sequence 
qkkkikixkkiiisxf*FIXSFTQXXDLINLLXKKGKK---

---KFXXXXLLKKKXKKKNY*siinqksn*nnhkfkkkn**nqekqs*cl*keryqh*nn
ivfniy*eimkryhqkkyhkfmksqileknl*vwqrkri*wminsfqf
Translated Amino Acid sequence (All Frames) 
Frame A:
qkkkikixkkiiisxf*FIXSFTQXXDLINLLXKKGKK---

---xnlxxsff*kkkxkkkiinpssiknqikiiinlkkkinkikksnhdafrkrdiniet
ilfsifikks*kdtikksitnl*nlry*rriykygkekefsg*silfnf

Frame B:
kkkk*kx*kk*lflxfnsyxhslkxxi*sis*xkkekk---

---xi*xxxsfkkkxkkkkllihhqskiklk*s*i*kkkliksrkaimmplereistlkq
ycfqyllrnhekipskkvsqiyeisdireefismakkknlvddqffsi

Frame C:
kkknknxkknnyfxvlihxfihsnxxfnqslx*krkkk---

---KFXXXXLLKKKXKKKNY*siinqksn*nnhkfkkkn**nqekqs*cl*keryqh*nn
ivfniy*eimkryhqkkyhkfmksqileknl*vwqrkri*wminsfqf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09799-1 (Contig-U09799-1Q)
/CSM_Contig/Contig-U09799-1Q.Seq.d
         (444 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09799-1 (Contig-U09799-1Q) /CSM_Contig/Conti...   426  e-120
Contig-U12455-1 (Contig-U12455-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U11926-1 (Contig-U11926-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U10654-1 (Contig-U10654-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U09405-1 (Contig-U09405-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U06537-1 (Contig-U06537-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U05026-1 (Contig-U05026-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U03565-1 (Contig-U03565-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U02216-1 (Contig-U02216-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U06294-1 (Contig-U06294-1Q) /CSM_Contig/Conti...    28  7.5

>Contig-U09799-1 (Contig-U09799-1Q) /CSM_Contig/Contig-U09799-1Q.Seq.d
          Length = 444

 Score =  426 bits (215), Expect = e-120
 Identities = 251/269 (93%)
 Strand = Plus / Plus

                                                                       
Query: 176 ttattaatccatcatcaatcaaaaatcaaattaaaataatcataaatttnnnnnnnnnnn 235
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 176 ttattaatccatcatcaatcaaaaatcaaattaaaataatcataaatttaaaaaaaaaaa 235

                                                                       
Query: 236 ttaataaaatcaagaaaagcaatcatgatgcctttagaaagagagatatcaacattgaaa 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttaataaaatcaagaaaagcaatcatgatgcctttagaaagagagatatcaacattgaaa 295

                                                                       
Query: 296 caatattgttttcaatatttattaagaaatcatgaaaagataccatcnnnnnnngtatca 355
           |||||||||||||||||||||||||||||||||||||||||||||||       ||||||
Sbjct: 296 caatattgttttcaatatttattaagaaatcatgaaaagataccatcaaaaaaagtatca 355

                                                                       
Query: 356 caaatttatgaaatctcagatattagagaagaatttataagtatggcaaagaaaaagaat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 caaatttatgaaatctcagatattagagaagaatttataagtatggcaaagaaaaagaat 415

                                        
Query: 416 ttagtggatgatcaattcttttcaatttt 444
           |||||||||||||||||||||||||||||
Sbjct: 416 ttagtggatgatcaattcttttcaatttt 444


 Score =  107 bits (54), Expect = 1e-23
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                      
Query: 32 taattatttcttngttttaattcatatnttcattcactcaaatnttngatttaatcaatc 91
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 taattatttcttngttttaattcatatnttcattcactcaaatnttngatttaatcaatc 91

                
Query: 92 tcttaa 97
          ||||||
Sbjct: 92 tcttaa 97


 Score = 28.2 bits (14), Expect = 7.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 293 aaacaatattgttt 306
           ||||||||||||||
Sbjct: 306 aaacaatattgttt 293


>Contig-U12455-1 (Contig-U12455-1Q) /CSM_Contig/Contig-U12455-1Q.Seq.d
          Length = 1763

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 199 aatcaaattaaaataat 215
           |||||||||||||||||
Sbjct: 83  aatcaaattaaaataat 99


>Contig-U11926-1 (Contig-U11926-1Q) /CSM_Contig/Contig-U11926-1Q.Seq.d
          Length = 4386

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 197 aaaatcaaattaaaataatca 217
           ||||| |||||||||||||||
Sbjct: 30  aaaataaaattaaaataatca 10


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6541
Number of Sequences: 6905
Number of extensions: 6541
Number of successful extensions: 692
Number of sequences better than 10.0: 220
length of query: 444
length of database: 5,674,871
effective HSP length: 16
effective length of query: 428
effective length of database: 5,564,391
effective search space: 2381559348
effective search space used: 2381559348
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.18
Homology vs DNA 
Query= Contig-U09799-1 (Contig-U09799-1Q) /CSM_Contig/Contig-U09799-1Q.Seq.d
         (444 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266032) Dictyostelium discoideum vegetative cDNA clone:VS...   188   1e-90  2
(AU266031) Dictyostelium discoideum vegetative cDNA clone:VS...   139   9e-29  1
(AC211114) Chlorocebus aethiops clone CH252-31B14, WORKING D...    42   0.059  3
(CR848684) Zebrafish DNA sequence from clone DKEY-15N21 in l...    50   0.067  1
(BX004883) Zebrafish DNA sequence from clone CH211-152O9.          50   0.067  1
(CU019549) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    50   0.067  1
(AC146853) Medicago truncatula clone mth2-66c24, WORKING DRA...    44   0.41   3
(AM484427) Vitis vinifera contig VV78X167522.9, whole genome...    44   0.53   2
(AC175407) Bos taurus clone CH240-425O9, WORKING DRAFT SEQUE...    42   0.58   4
(ED707036) GM_WBb0052G09.f GM_WBb Glycine max genomic clone ...    32   1.0    3
(AC223460) Bos taurus clone CH240-468O20, WORKING DRAFT SEQU...    46   1.0    1
(AC170928) Bos taurus clone CH240-195M16, WORKING DRAFT SEQU...    46   1.0    1
(CT183085) Sus scrofa genomic clone CH242-85D15, genomic sur...    40   1.3    2
(AC211140) Zea mays chromosome 1 clone CH201-159B4; ZMMBBc01...    38   2.1    3
(AC186909) Microcebus murinus clone CH257-155I17, WORKING DR...    40   2.4    3
(AM443598) Vitis vinifera contig VV78X084992.4, whole genome...    34   2.6    3
(DV601558) EST1204553 Glossina morsitans morsitans Fat body ...    40   3.4    2
(BX569033) Glossina morsitans morsitans (Tseatse fly) EST fr...    40   3.5    2
(AC118121) Rattus norvegicus clone CH230-24A19, *** SEQUENCI...    36   3.9    3
(AC229885) Zea mays chromosome 3 clone CH201-482J15; ZMMBBc0...    44   4.0    2
(BV166778) STAT1_425 Rhesus macaque genomic DNA Macaca mulat...    44   4.1    1
(AC198680) Rhesus Macaque  BAC CH250-125J6 () complete seque...    44   4.1    1
(CU570763) M.truncatula DNA sequence from clone MTH2-172G19 ...    44   4.1    1
(AC156100) Bos taurus clone CH240-44G8, WORKING DRAFT SEQUEN...    44   4.1    1
(CU914202) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.1    1
(AC181886) Strongylocentrotus purpuratus clone R3-1018E18, W...    44   4.1    1
(AC171249) Bos taurus clone CH240-301O22, WORKING DRAFT SEQU...    44   4.1    1
(DU023882) 3808 Tomato HindIII BAC Library Solanum lycopersi...    44   4.1    1
(DE448335) Bombyx mori genomic DNA, Fosmid clone:GBMFno39_n1...    44   4.1    1
(DE357440) Bombyx mori genomic DNA, BAC clone:BET_085_F09.         44   4.1    1
(CT019599) KBrH126G22 genomic clone, KBrH (HindIII) BAC libr...    44   4.1    1
(AE015927) Clostridium tetani E88, complete genome.                44   4.1    1
(BX215113) Danio rerio genomic clone DKEY-265K8, genomic sur...    34   4.2    2
(BX560654) Glossina morsitans morsitans (Tseatse fly) EST fr...    40   4.4    2
(BH479525) BOGUP85TF BOGU Brassica oleracea genomic clone BO...    34   4.7    2
(AC118439) Rattus norvegicus clone CH230-292B6, WORKING DRAF...    38   4.9    2
(AC096962) Rattus norvegicus clone CH230-95L19, WORKING DRAF...    38   5.1    2
(BI493759) df105c03.y1 Morton Fetal Cochlea Homo sapiens cDN...    30   5.4    3
(DV608072) EST1211068 Glossina morsitans morsitans Fat body ...    40   5.4    2
(BX470178) Zebrafish DNA sequence from clone CH211-285K18 in...    38   5.6    4
(AL831771) Mouse DNA sequence from clone RP23-336F13 on chro...    34   5.6    5
(DE919953) Macropus eugenii DNA, BAC clone: MEB1-106K14_F, 5...    34   5.7    2
(ED129132) AUAC-aaz47d08.g1 Ascaris suum whole genome shotgu...    34   5.8    2
(ES765469) TFL_79_H06_E001.g1 USDA-Tifton Peanut Library TFL...    36   5.9    2
(DV605688) EST1208684 Glossina morsitans morsitans Fat body ...    40   5.9    2
(ED378190) AUAC-aan78d06.g1 Ascaris suum whole genome shotgu...    34   6.0    2
(AC009990) Homo sapiens chromosome 05 clone RP11-94N1, compl...    38   6.3    3
(CZ199776) AIAA-aah16l07.b1 Ancylostoma caninum whole genome...    34   6.3    2
(BX321879) Zebrafish DNA sequence from clone CH211-147M4 in ...    38   6.5    3
(DV616341) EST1219337 Glossina morsitans morsitans Fat body ...    40   6.6    2
(DU923557) 344942 Tomato EcoRI BAC Library Solanum lycopersi...    40   6.8    2
(AW022714) df42f12.y1 Morton Fetal Cochlea Homo sapiens cDNA...    30   7.1    3
(DV611607) EST1214603 Glossina morsitans morsitans Fat body ...    40   7.1    2
(AW021315) df20g04.y1 Morton Fetal Cochlea Homo sapiens cDNA...    30   7.3    3
(AW021457) df23h01.y1 Morton Fetal Cochlea Homo sapiens cDNA...    30   7.4    3
(BI497151) df132f05.y1 Morton Fetal Cochlea Homo sapiens cDN...    30   7.5    3
(BI497187) df133b12.y1 Morton Fetal Cochlea Homo sapiens cDN...    30   7.5    3
(BX004768) Zebrafish DNA sequence from clone CH211-15L16.          38   7.6    3
(CU686771) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   8.0    4
(AC218587) Bos taurus clone CH240-311C12, WORKING DRAFT SEQU...    42   8.1    3
(AC161404) Medicago truncatula chromosome 2 BAC clone mth2-3...    34   8.2    4
(AC010259) Homo sapiens chromosome 5 clone CTC-454M9, comple...    38   8.7    3
(AC177031) Strongylocentrotus purpuratus clone R3-38B23, WOR...    38   9.2    3
(AW021175) df19g05.y1 Morton Fetal Cochlea Homo sapiens cDNA...    30   9.3    3
(AC178508) Strongylocentrotus purpuratus clone R3-3033E12, W...    38   9.8    2

>(AU266032) Dictyostelium discoideum vegetative cDNA clone:VSG142,
           3' end single read.
          Length = 319

 Score =  188 bits (95), Expect(2) = 1e-90
 Identities = 95/95 (100%)
 Strand = Plus / Plus


Query: 350 gtatcacaaatttatgaaatctcagatattagagaagaatttataagtatggcaaagaaa 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gtatcacaaatttatgaaatctcagatattagagaagaatttataagtatggcaaagaaa 283


Query: 410 aagaatttagtggatgatcaattcttttcaatttt 444
           |||||||||||||||||||||||||||||||||||
Sbjct: 284 aagaatttagtggatgatcaattcttttcaatttt 318

 Score =  176 bits (89), Expect(2) = 1e-90
 Identities = 89/89 (100%)
 Strand = Plus / Plus


Query: 254 gcaatcatgatgcctttagaaagagagatatcaacattgaaacaatattgttttcaatat 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gcaatcatgatgcctttagaaagagagatatcaacattgaaacaatattgttttcaatat 187


Query: 314 ttattaagaaatcatgaaaagataccatc 342
           |||||||||||||||||||||||||||||
Sbjct: 188 ttattaagaaatcatgaaaagataccatc 216

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 509,197,540
Number of extensions: 31940883
Number of successful extensions: 2962050
Number of sequences better than 10.0: 66
Length of query: 444
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 421
Effective length of database: 93,106,754,628
Effective search space: 39197943698388
Effective search space used: 39197943698388
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09799-1 (Contig-U09799-1Q) /CSM_Contig/Contig-U09799-1Q.Seq.d
         (444 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G21) RecName: Full=FK506-binding protein 5;          EC=5.2....    32   6.8

>(Q54G21) RecName: Full=FK506-binding protein 5;
           EC=5.2.1.8; AltName: Full=Peptidyl-prolyl cis-trans
           isomerase;          Short=PPIase;
           Short=Rotamase;
          Length = 1622

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +2

Query: 260 MMPLEREISTLKQYCFQYLLRNHEKIPSKKVSQIYEISDIREEFISMAKKKNLVDD 427
           M+ L+  I+TL +   Q+L  N + + S+  +    ++ +R + I + K+K LV+D
Sbjct: 632 MVTLKENIATLHKKNEQFLEENTKMMESRNEAITDNVAQMRRQIIDLQKQKTLVED 687

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 319,633,583
Number of extensions: 5260282
Number of successful extensions: 9387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9381
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 1,040,966,779
Length adjustment: 110
Effective length of query: 38
Effective length of database: 688,495,429
Effective search space: 26162826302
Effective search space used: 26162826302
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.33  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U09799-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0