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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09796-1
Contig ID Contig-U09796-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Contig-U09796-1Q.Seq.d
CAAATTCAACAACTCAATGAAAAGATTCAACAACTCAACGATATCATCAT
TACAAAGGATCAATCATTGGCAACTTGTAATTTAGAACGTAAAAAACAAC
TCAACGATTTCGCTTTAAACTATAAAAAACTTCAAGAACAATATGAAATT
GTAGATGTTGATAAATCACTTCAAATCAATGAAAAGGATTCTCAATTAAA
TCAAGCATTAATTGATTTAAAATATCTTCATGATTTAGTTGACAAATTAA
GTCCAGGTTTCTTTAAAAATTTTCCAAATAATAGAAATCAATTACAACAA
CAACCACAACCACCATCAACTCAACAAACCAGAATTCCACCAATTTCAAC
ACAACAAACAAGTCATGGTGGTGTAAGAGATCCATTTTCACCATCTAGAC
AAGTACCTCAACCACAACCACAACCACAACCACAACCACAACCACAACCA
CAACCACAACCACAATCAAATATTAATAATCCTCAAAGAAGGAATTTAAA
TGGAAATAGTGGTAACAGTAGTAGTAGTAATGGTGCATTTTCAACATCTC
AACTTAGAA----------GGNGNAAAAAAAAAAAAAAAAAAAAATCTAT
TTTGGTTTTATCAATTTAATTATTATAAAACAAAATGATTATCCTGTTAT
AATAATAATAATAATAATAA
Gap gap included
Contig length 660
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5976671
End point 5976010
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09796
List of clone(s) 

est1=VSF793F,1,560
est2=VSF793Z,561,662
Translated Amino Acid sequence 
QIQQLNEKIQQLNDIIITKDQSLATCNLERKKQLNDFALNYKKLQEQYEIVDVDKSLQIN
EKDSQLNQALIDLKYLHDLVDKLSPGFFKNFPNNRNQLQQQPQPPSTQQTRIPPISTQQT
SHGGVRDPFSPSRQVPQPQPQPQPQPQPQPQPQPQSNINNPQRRNLNGNSGNSSSSNGAF
STSQLR---

---XXKKKKKKIYFGFINLIIIKQNDYPVIIIIIII
Translated Amino Acid sequence (All Frames) 
Frame A:
QIQQLNEKIQQLNDIIITKDQSLATCNLERKKQLNDFALNYKKLQEQYEIVDVDKSLQIN
EKDSQLNQALIDLKYLHDLVDKLSPGFFKNFPNNRNQLQQQPQPPSTQQTRIPPISTQQT
SHGGVRDPFSPSRQVPQPQPQPQPQPQPQPQPQPQSNINNPQRRNLNGNSGNSSSSNGAF
STSQLR---

---gxkkkkkknlfwfyqfnyyktk*lscynnnnnn

Frame B:
kfnnsmkrfnnstisslqrinhwqlvi*nvknnstisl*tiknfknnmkl*mlinhfksm
kriln*ikh*li*nifmi*ltn*vqvslkifqiieinynnnhnhhqlnkpefhqfqhnkq
vmvv*eihfhhldkylnhnhnhnhnhnhnhnhnhnqiliilkegi*meivvtvvvvmvhf
qhlnle---

---XXKKKKKKIYFGFINLIIIKQNDYPVIIIIIII

Frame C:
nsttq*kdsttqryhhykgsiignl*frt*kttqrfrfkl*ktsrti*ncrc**itsnq*
kgfsikssin*fkiss*fs*qiksrfl*kfsk**ksitttttttinstnqnstnfnttnk
swwckrsifti*tststtttttttttttttttttiky**sskkefkwk*w*q****wcif
nist*---

---xkkkkkkksilvlsi*ll*nkmiill*******
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09796-1 (Contig-U09796-1Q)
/CSM_Contig/Contig-U09796-1Q.Seq.d
         (670 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Conti...   571  e-163
Contig-U04450-1 (Contig-U04450-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12380-1 (Contig-U12380-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12069-1 (Contig-U12069-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U11376-1 (Contig-U11376-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U13443-1 (Contig-U13443-1Q) /CSM_Contig/Conti...    36  0.047
Contig-U10126-1 (Contig-U10126-1Q) /CSM_Contig/Conti...    36  0.047
Contig-U09703-1 (Contig-U09703-1Q) /CSM_Contig/Conti...    36  0.047
Contig-U09658-1 (Contig-U09658-1Q) /CSM_Contig/Conti...    36  0.047
Contig-U00886-1 (Contig-U00886-1Q) /CSM_Contig/Conti...    30  2.9

>Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Contig-U09796-1Q.Seq.d
          Length = 670

 Score =  571 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattcaacaactcaatgaaaagattcaacaactcaacgatatcatcattacaaaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caaattcaacaactcaatgaaaagattcaacaactcaacgatatcatcattacaaaggat 60

                                                                       
Query: 61  caatcattggcaacttgtaatttagaacgtaaaaaacaactcaacgatttcgctttaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caatcattggcaacttgtaatttagaacgtaaaaaacaactcaacgatttcgctttaaac 120

                                                                       
Query: 121 tataaaaaacttcaagaacaatatgaaattgtagatgttgataaatcacttcaaatcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tataaaaaacttcaagaacaatatgaaattgtagatgttgataaatcacttcaaatcaat 180

                                                                       
Query: 181 gaaaaggattctcaattaaatcaagcattaattgatttaaaatatcttcatgatttagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaaaaggattctcaattaaatcaagcattaattgatttaaaatatcttcatgatttagtt 240

                                                           
Query: 241 gacaaattaagtccaggtttctttaaaaattttccaaataatagaaat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gacaaattaagtccaggtttctttaaaaattttccaaataatagaaat 288


 Score =  186 bits (94), Expect = 2e-47
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 466 tcaaatattaataatcctcaaagaaggaatttaaatggaaatagtggtaacagtagtagt 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tcaaatattaataatcctcaaagaaggaatttaaatggaaatagtggtaacagtagtagt 525

                                             
Query: 526 agtaatggtgcattttcaacatctcaacttagaa 559
           ||||||||||||||||||||||||||||||||||
Sbjct: 526 agtaatggtgcattttcaacatctcaacttagaa 559


 Score =  113 bits (57), Expect = 2e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                    
Query: 352 caacaaacaagtcatggtggtgtaagagatccattttcaccatctagacaagtacct 408
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 caacaaacaagtcatggtggtgtaagagatccattttcaccatctagacaagtacct 408


 Score =  105 bits (53), Expect = 6e-23
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                
Query: 596 tctattttggttttatcaatttaattattataaaacaaaatgattatcctgtt 648
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tctattttggttttatcaatttaattattataaaacaaaatgattatcctgtt 648


>Contig-U04450-1 (Contig-U04450-1Q) /CSM_Contig/Contig-U04450-1Q.Seq.d
          Length = 2252

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 603 tggttttatcaatttaattattat 626
           |||||||||||||||| |||||||
Sbjct: 805 tggttttatcaatttatttattat 828


>Contig-U12380-1 (Contig-U12380-1Q) /CSM_Contig/Contig-U12380-1Q.Seq.d
          Length = 1285

 Score = 38.2 bits (19), Expect = 0.012
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 517 agtagtagtagtaatggtg 535
           |||||||||||||||||||
Sbjct: 723 agtagtagtagtaatggtg 705


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,862
Number of Sequences: 6905
Number of extensions: 10862
Number of successful extensions: 1442
Number of sequences better than 10.0: 163
length of query: 670
length of database: 5,674,871
effective HSP length: 16
effective length of query: 654
effective length of database: 5,564,391
effective search space: 3639111714
effective search space used: 3639111714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA 
Query= Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Contig-U09796-1Q.Seq.d
         (670 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116551) Dictyostelium discoideum chromosome 2 map complem...   569   0.0    4
(AU265802) Dictyostelium discoideum vegetative cDNA clone:VS...   569   0.0    3
(AU265803) Dictyostelium discoideum vegetative cDNA clone:VS...   105   2e-18  1
(FD546795) RR3FD53JQ RR3(NY) Raphanus raphanistrum subsp. ra...    44   0.071  2
(BX530068) Zebrafish DNA sequence from clone CH211-1N9 in li...    40   0.088  4
(AM423986) Vitis vinifera contig VV78X004709.7, whole genome...    50   0.11   1
(CR381638) Zebrafish DNA sequence from clone DKEYP-20A11 in ...    46   0.14   3
(BX511103) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   0.25   3
(EC323537) EMBRYOF091721N17 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    34   0.31   2
(AM475752) Vitis vinifera contig VV78X026343.3, whole genome...    48   0.43   1
(AC135012) Homo sapiens chromosome 16 clone RP11-805I24, com...    48   0.43   1
(AC025977) Homo sapiens chromosome 4 clone RP11-565I1 map 4,...    48   0.43   1
(AC201812) Zea mays chromosome 10 clone CH201-247L19; ZMMBBc...    48   0.43   1
(FI123198) MUGQ_CH252P496P13T7_CH0202_049 CHORI-252 Vervet M...    48   0.43   1
(CC126253) NDL.94C10.SP6 Notre Dame Liverpool Aedes aegypti ...    48   0.43   1
(DV417368) NADZ430TR Aedes aegypti infected with Dengue viru...    48   0.43   1
(DV415657) NADWB62TR Aedes aegypti infected with Dengue viru...    48   0.43   1
(DV353586) NABX906TO Aedes aegypti infected with Plasmodium ...    48   0.43   1
(DV249810) A2FNV12TV Aedes aegypti full length cDNA library,...    48   0.43   1
(CT545294) A BAC library has been constructed from cultivar ...    38   0.70   2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   0.71   8
(EJ293390) 1095388008837 Global-Ocean-Sampling_GS-27-01-01-1...    34   0.73   3
(CT560196) A BAC library has been constructed from cultivar ...    38   0.74   2
(AL424455) T3 end of clone AZ0AA014E05 of library AZ0AA from...    34   1.2    2
(AM455736) Vitis vinifera, whole genome shotgun sequence, co...    34   1.4    4
(AC023908) Homo sapiens chromosome 15 clone RP11-37C7 map 15...    46   1.7    1
(AC012377) Homo sapiens chromosome 15 clone RP11-325N19 map ...    46   1.7    1
(AC005587) Homo sapiens PAC clone RP5-988G15 from 6, complet...    46   1.7    1
(CU694753) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.7    1
(CU694752) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.7    1
(CU686771) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.7    1
(AC090863) Homo sapiens chromosome 15 clone RP11-37C7 map 15...    46   1.7    1
(AC181550) Strongylocentrotus purpuratus clone R3-7F22, WORK...    46   1.7    1
(AC024707) Homo sapiens chromosome 15 clone RP11-127C24, WOR...    46   1.7    1
(AC012138) Homo sapiens clone RP11-10K15, WORKING DRAFT SEQU...    46   1.7    1
(AK274333) Gryllus bimaculatus mRNA, GBcontig21194.                46   1.7    1
(AQ277006) CITBI-E1-2517E8.TF CITBI-E1 Homo sapiens genomic ...    46   1.7    1
(FE240178) CAPG5726.fwd CAPG Naegleria gruberi amoeba stage ...    46   1.7    1
(EY351637) CAWZ18223.rev CAWZ Helobdella robusta Primary Lat...    46   1.7    1
(EY333889) CAWY599.rev CAWY Helobdella robusta Subtracted Ea...    46   1.7    1
(EY300745) CAWX15190.rev CAWX Helobdella robusta Primary Ear...    46   1.7    1
(CP000083) Colwellia psychrerythraea 34H, complete genome.         46   1.7    1
(AC004695) Homo sapiens BAC clone CTA-317H1 from 3p13-3p14.2...    44   1.8    4
(AC230911) Bos taurus clone CH240-496C5, WORKING DRAFT SEQUE...    36   2.3    6
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    32   2.8    8
(DY976882) CLSS10627.b1_E18.ab1 CLS(LMS) lettuce sativa Lact...    40   3.4    2
(AC168144) Bos taurus clone CH240-204B5, WORKING DRAFT SEQUE...    38   3.8    6
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   4.0    9
(AL663040) Mouse DNA sequence from clone RP23-61M22 on chrom...    42   4.7    2
(AC178292) Strongylocentrotus purpuratus clone R3-3095E21, W...    34   5.0    6
(AM438697) Vitis vinifera contig VV78X240063.2, whole genome...    38   5.0    2
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    42   5.8    3
(AC180631) Strongylocentrotus purpuratus clone R3-3090I4, WO...    40   6.1    4
(AC109928) Homo sapiens BAC clone RP11-755F21 from 4, comple...    44   6.1    2
(EW253752) rhyp05c_c21.y1 hyp Sus scrofa cDNA 5', mRNA seque...    34   6.2    2
(BX571678) Zebrafish DNA sequence from clone DKEY-271J15 in ...    44   6.6    1
(AL663041) Mouse DNA sequence from clone RP23-342H16 on chro...    44   6.6    1
(AC165266) Mus musculus BAC clone CH25-588N10 from chromosom...    44   6.6    1
(CT837005) Oryza sativa (indica cultivar-group) cDNA clone:O...    44   6.6    1
(AF098989) Caenorhabditis elegans cosmid F47G6, complete seq...    44   6.6    1
(AL136088) Human DNA sequence from clone RP5-1024C24 on chro...    44   6.6    1
(AC104849) Homo sapiens chromosome 3 clone RP11-154D3, compl...    44   6.6    1
(AC093694) Homo sapiens BAC clone RP11-769N3 from 4, complet...    44   6.6    1
(AC004169) Homo sapiens chromosome 4 clone C0236G06 map 4p16...    44   6.6    1
(AC148576) Dasypus novemcinctus clone VMRC5-419L14, WORKING ...    44   6.6    1
(AC145142) Homo sapiens chromosome 5 clone RP11-1398P22, WOR...    44   6.6    1
(AC104935) Mus musculus clone RP24-422N10, LOW-PASS SEQUENCE...    44   6.6    1
(AC099251) Rattus norvegicus clone CH230-159B11, *** SEQUENC...    44   6.6    1
(CU928774) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.6    1
(AC094114) Rattus norvegicus clone CH230-2N4, *** SEQUENCING...    44   6.6    1
(AC090537) Homo sapiens chromosome 11 clone RP5-1024C24 map ...    44   6.6    1
(CR940326) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.6    1
(CR396581) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.6    1
(AP002738) Homo sapiens genomic DNA, chromosome 4q22-q24, cl...    44   6.6    1
(AC230290) Bos taurus clone CH240-514B5, WORKING DRAFT SEQUE...    44   6.6    1
(AC230289) Bos taurus clone CH240-514B13, WORKING DRAFT SEQU...    44   6.6    1
(AC224075) Bos taurus clone CH240-451A14, WORKING DRAFT SEQU...    44   6.6    1
(AC180904) Strongylocentrotus purpuratus clone R3-3064H08, W...    44   6.6    1
(AC167752) Bos taurus clone CH240-214A7, WORKING DRAFT SEQUE...    44   6.6    1
(AC164189) Bos taurus clone CH240-151D2, *** SEQUENCING IN P...    44   6.6    1
(AC164167) Mus musculus chromosome 18 clone CH25-17L15, WORK...    44   6.6    1
(AC016880) Homo sapiens chromosome 11 clone RP11-138P10 map 11.    44   6.6    1
(AC006910) Caenorhabditis elegans clone Y92H12, *** SEQUENCI...    44   6.6    1
(AQ548231) RPCI-11-412B4.TV RPCI-11 Homo sapiens genomic clo...    44   6.6    1
(ER633784) 1093018587825 Global-Ocean-Sampling_GS-36-01-01-2...    44   6.6    1
(ER514405) 1093015485816 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.6    1
(ER334150) 1092344291595 Global-Ocean-Sampling_GS-34-01-01-1...    44   6.6    1
(EK314010) 1095462406572 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.6    1
(EJ889377) 1093018434259 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.6    1
(EJ884406) 1093018411257 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.6    1
(EJ866173) 1093018279914 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.6    1
(EJ784099) 1093017301532 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.6    1
(EJ577115) 1092960116661 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.6    1
(EJ549166) 1092959427997 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.6    1
(EJ527095) 1092955193300 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.6    1
(EJ466851) 1095403340395 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.6    1
(EJ452953) 1093015453955 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.6    1
(EJ361432) 1092963688557 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.6    1
(EJ297267) 1095388051989 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.6    1
(EJ177837) 1092344107637 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.6    1

>(AC116551) Dictyostelium discoideum chromosome 2 map
             complement(581327-427576) strain AX4, complete sequence.
          Length = 153751

 Score =  569 bits (287), Expect(4) = 0.0
 Identities = 287/287 (100%)
 Strand = Plus / Minus


Query: 1     caaattcaacaactcaatgaaaagattcaacaactcaacgatatcatcattacaaaggat 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73439 caaattcaacaactcaatgaaaagattcaacaactcaacgatatcatcattacaaaggat 73380


Query: 61    caatcattggcaacttgtaatttagaacgtaaaaaacaactcaacgatttcgctttaaac 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73379 caatcattggcaacttgtaatttagaacgtaaaaaacaactcaacgatttcgctttaaac 73320


Query: 121   tataaaaaacttcaagaacaatatgaaattgtagatgttgataaatcacttcaaatcaat 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73319 tataaaaaacttcaagaacaatatgaaattgtagatgttgataaatcacttcaaatcaat 73260


Query: 181   gaaaaggattctcaattaaatcaagcattaattgatttaaaatatcttcatgatttagtt 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73259 gaaaaggattctcaattaaatcaagcattaattgatttaaaatatcttcatgatttagtt 73200


Query: 241   gacaaattaagtccaggtttctttaaaaattttccaaataatagaaa 287
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73199 gacaaattaagtccaggtttctttaaaaattttccaaataatagaaa 73153

 Score =  186 bits (94), Expect(4) = 0.0
 Identities = 94/94 (100%)
 Strand = Plus / Minus


Query: 466   tcaaatattaataatcctcaaagaaggaatttaaatggaaatagtggtaacagtagtagt 525
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72974 tcaaatattaataatcctcaaagaaggaatttaaatggaaatagtggtaacagtagtagt 72915


Query: 526   agtaatggtgcattttcaacatctcaacttagaa 559
             ||||||||||||||||||||||||||||||||||
Sbjct: 72914 agtaatggtgcattttcaacatctcaacttagaa 72881

 Score = 95.6 bits (48), Expect(4) = 0.0
 Identities = 48/48 (100%)
 Strand = Plus / Minus


Query: 596   tctattttggttttatcaatttaattattataaaacaaaatgattatc 643
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72732 tctattttggttttatcaatttaattattataaaacaaaatgattatc 72685

 Score = 93.7 bits (47), Expect(4) = 0.0
 Identities = 47/47 (100%)
 Strand = Plus / Minus


Query: 362   gtcatggtggtgtaagagatccattttcaccatctagacaagtacct 408
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73078 gtcatggtggtgtaagagatccattttcaccatctagacaagtacct 73032

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 669,672,625
Number of extensions: 43756862
Number of successful extensions: 4168879
Number of sequences better than 10.0: 126
Length of query: 670
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 646
Effective length of database: 97,308,875,965
Effective search space: 62861533873390
Effective search space used: 62861533873390
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Contig-U09796-1Q.Seq.d
         (670 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_32(AC116551|pid:none) Dictyostelium discoideum chromoso...   232   7e-60
AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso...    38   0.24
BX538352_113(BX538352|pid:none) Cryptosporidium parvum chromosom...    37   0.40
FM992691_96(FM992691|pid:none) Candida dubliniensis CD36 chromos...    37   0.53
AF499596_104(AF499596|pid:none) Phthorimaea operculella granulov...    36   1.2
AK117552_1(AK117552|pid:none) Arabidopsis thaliana At3g12020 mRN...    36   1.2
(Q49XE1) RecName: Full=Nuclease sbcCD subunit C;  &AP008934_1411...    36   1.2
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...    35   1.5
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    35   2.0
CP001130_385(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co...    35   2.0
FN357481_8(FN357481|pid:none) Schistosoma mansoni genome sequenc...    35   2.6
CP000102_112(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    35   2.6
AP002040_15(AP002040|pid:none) Arabidopsis thaliana genomic DNA,...    35   2.6
AM946015_1740(AM946015|pid:none) Streptococcus uberis 0140J comp...    35   2.6
AE014185_289(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.4
AE010300_2573(AE010300|pid:none) Leptospira interrogans serovar ...    34   4.5
AE016823_1370(AE016823|pid:none) Leptospira interrogans serovar ...    34   4.5
AE016877_4877(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    34   4.5
CP001287_2575(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    33   5.8
AL844505_286(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.8
D64087_1(D64087|pid:none) Daucus carota NMCP1 mRNA for nuclear m...    33   5.8
AP007159_294(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...    33   5.8
AB325903_1(AB325903|pid:none) Coriandrum sativum NMCP1-like gene...    33   5.8
CP000675_1971(CP000675|pid:none) Legionella pneumophila str. Cor...    33   7.6
AF019972_1(AF019972|pid:none) Plasmodium chabaudi chabaudi NE-ri...    33   7.6
AJ938182_1204(AJ938182|pid:none) Staphylococcus aureus RF122 com...    33   7.6
(Q6KIH8) RecName: Full=Protein grpE; AltName: Full=HSP-70 cofact...    33   7.6
AE017308_112(AE017308|pid:none) Mycoplasma mobile 163K complete ...    33   7.6
BX293980_216(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi...    33   7.6
AE015450_321(AE015450|pid:none) Mycoplasma gallisepticum strain ...    33   7.6
(Q2YXX0) RecName: Full=Nuclease sbcCD subunit C;                       33   7.6
(P44928) RecName: Full=Multidrug resistance protein A homolog;  ...    33   10.0
(Q8NWV1) RecName: Full=Nuclease sbcCD subunit C;  &BA000033_1233...    33   10.0
AE017226_389(AE017226|pid:none) Treponema denticola ATCC 35405, ...    33   10.0
CP000057_936(CP000057|pid:none) Haemophilus influenzae 86-028NP,...    33   10.0
CP000829_416(CP000829|pid:none) Streptococcus pyogenes NZ131, co...    33   10.0
CP001393_1103(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    33   10.0
(A5ISM9) RecName: Full=Nuclease sbcCD subunit C;  &(A6U1G7) RecN...    33   10.0
CP001106_645(CP001106|pid:none) Eubacterium eligens ATCC 27750 p...    33   10.0
(Q2FYT3) RecName: Full=Nuclease sbcCD subunit C;                       33   10.0
CP001107_490(CP001107|pid:none) Eubacterium rectale ATCC 33656, ...    33   10.0
CP000253_1263(CP000253|pid:none) Staphylococcus aureus subsp. au...    33   10.0
AE004092_382(AE004092|pid:none) Streptococcus pyogenes M1 GAS, c...    33   10.0
(Q6G9L2) RecName: Full=Nuclease sbcCD subunit C;  &BX571857_1292...    33   10.0
(Q2FH88) RecName: Full=Nuclease sbcCD subunit C;  &CP000255_1218...    33   10.0
AF499008_1(AF499008|pid:none) Bos taurus hyaluronic acid-mediate...    33   10.0
(A6QGP8) RecName: Full=Nuclease sbcCD subunit C;  &(A8Z219) RecN...    33   10.0

>AC116551_32(AC116551|pid:none) Dictyostelium discoideum chromosome 2
            map complement(581327-427576) strain AX4, complete
            sequence.
          Length = 799

 Score =  232 bits (592), Expect = 7e-60
 Identities = 128/186 (68%), Positives = 128/186 (68%)
 Frame = +1

Query: 1    QIQQLNEKIQQLNDIIITKDQSLATCNLERKKQLNDFALNYKKLQEQYEIVDVDKSLQIN 180
            QIQQLNEKIQQLNDIIITKDQSLATCNLERKKQLNDFALNYKKLQEQYEIVDVDKSLQIN
Sbjct: 581  QIQQLNEKIQQLNDIIITKDQSLATCNLERKKQLNDFALNYKKLQEQYEIVDVDKSLQIN 640

Query: 181  EKDSQLNQALIDLKYLHDLVDKLSPGFFKNFXXXXXXXXXXXXXXXXXXXXXXXXSTQQT 360
            EKDSQLNQALIDLKYLHDLVDKLSPGFFKNF                        STQQT
Sbjct: 641  EKDSQLNQALIDLKYLHDLVDKLSPGFFKNFPNNRNQLQQQPQPPSTQQTRIPPISTQQT 700

Query: 361  SHGGVRDPFSPSRQVXXXXXXXXXXXXXXXXXXXXSNINNPQRRXXXXXXXXXXXXXXAF 540
            SHGGVRDPFSPSRQV                    SNINNPQRR              AF
Sbjct: 701  SHGGVRDPFSPSRQVPQPQPQPQPQPQPQPQPQPQSNINNPQRRNLNGNSGNSSSSNGAF 760

Query: 541  STSQLR 558
            STSQLR
Sbjct: 761  STSQLR 766

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 566,989,629
Number of extensions: 8185420
Number of successful extensions: 28484
Number of sequences better than 10.0: 47
Number of HSP's gapped: 28442
Number of HSP's successfully gapped: 48
Length of query: 223
Length of database: 1,040,966,779
Length adjustment: 124
Effective length of query: 99
Effective length of database: 643,635,439
Effective search space: 63719908461
Effective search space used: 63719908461
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.65  gvh: 0.36  alm: 0.31  top: 0.53  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for Contig-U09796-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0