Contig-U09794-1
Contig ID Contig-U09794-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09794-1 (Contig-U09794-1Q) /CSM_Contig/Contig-U09794-1Q.Seq.d
ATAATAAATGTCAGTTGCATCAAGGATAAGAGATAAATTAAAGAATAATT
TAGAGAGTAGTGGTGGACATTCAGTAGTTACAAGTGGTACAAAAGTAATT
AGATATAGAGCAGGTCAAAGACCAGATTATGCAGAAGCGGAAGATGATCA
AGATAGTCATTTTTCAAATATTCAAAATCAAAAATCAATTAAAGAAGCAG
AAACAAATGATCCGAGATTAGCTAGATTTAAAAATAGGTCTTCAAATCAA
GATGAACCACAATCTGTTGAAGAAAGAAAAGCAAGTAGAAGAAGACATCA
TGATGATGATAATGATAATGATACCACCACCACAACTACAACCACTACAT
CAAGAAGAATACAAAAAACAGAGATTATAAAAGAAGATGATGATAATAAT
AATAATAATAATAATGATACAAAAAAGGATCATAATGATGATGATGAAGA
TGATGATAGAAGAAGAAGAGCAAAAGAAAGATATTTAAAGAAAAAAGAAG
AAGAAGAACAAAAACAAAAAGAATTAGAAGAGAAACAACAACCATTTAAA
GATA----------GNAGTNAAAAACTATTATGGATTCAAAAANAATTGG
AGNGNGTTAGANTGGANATTNAAACTCGTNTATTGGCANAATTTTAAAAN
AAANAATTTGCNAAAANAANAGCNA

Gap gap included
Contig length 665
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5526117
End point 5525451
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09794
List of clone(s)

est1=VSF660F,1,555
est2=VSF660Z,556,667
Translated Amino Acid sequence
**MSVASRIRDKLKNNLESSGGHSVVTSGTKVIRYRAGQRPDYAEAEDDQDSHFSNIQNQ
KSIKEAETNDPRLARFKNRSSNQDEPQSVEERKASRRRHHDDDNDNDTTTTTTTTTSRRI
QKTEIIKEDDDNNNNNNNDTKKDHNDDDEDDDRRRRAKERYLKKKEEEEQKQKELEEKQQ
PFKD---

---XVKNYYGFKXNWXXLXWXXKLVYWXNFKXXNLXKXXX


Translated Amino Acid sequence (All Frames)
Frame A:
iinvscikdkr*ike*fre*wwtfssykwyksn*i*srsktrlcrsgr*sr*sffkysks
kin*rsrnk*seis*i*k*vfksr*ttic*rkksk*kkts*******yhhhnynhyikkn
tknrdykrr**********ykkgs*****r***kkkskrkifkekrrrrtktkrirrett
ti*r---

---XVKNYYGFKXNWXXLXWXXKLVYWXNFKXXNLXKXXX

Frame B:
**MSVASRIRDKLKNNLESSGGHSVVTSGTKVIRYRAGQRPDYAEAEDDQDSHFSNIQNQ
KSIKEAETNDPRLARFKNRSSNQDEPQSVEERKASRRRHHDDDNDNDTTTTTTTTTSRRI
QKTEIIKEDDDNNNNNNNDTKKDHNDDDEDDDRRRRAKERYLKKKEEEEQKQKELEEKQQ
PFKD---

---xxktimdskxigxx*xgxxnsxigxilkxxicxxxs

Frame C:
nkcqlhqg*ein*rii*rvvvdiq*lqvvqk*ldieqvkdqimqkrkmikivifqifkik
nqlkkqkqmird*ldlkiglqikmnhnllkkekqveedimmmimimipppqlqplhqeey
kkqrl*kkmmiiiiiiimiqkriimmmmkmmieeeeqkkdi*rkkkkknknkkn*krnnn
hlki---

---sxkllwiqkxlexvrxxixtrxlaxf*xkxfakxxa

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09794-1 (Contig-U09794-1Q)
/CSM_Contig/Contig-U09794-1Q.Seq.d
(675 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09794-1 (Contig-U09794-1Q) /CSM_Contig/Conti... 777 0.0
Contig-U11812-1 (Contig-U11812-1Q) /CSM_Contig/Conti... 46 5e-05
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U09578-1 (Contig-U09578-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U04960-1 (Contig-U04960-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U14541-1 (Contig-U14541-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U14170-1 (Contig-U14170-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U12260-1 (Contig-U12260-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U12014-1 (Contig-U12014-1Q) /CSM_Contig/Conti... 40 0.003

>Contig-U09794-1 (Contig-U09794-1Q) /CSM_Contig/Contig-U09794-1Q.Seq.d
Length = 675

Score = 777 bits (392), Expect = 0.0
Identities = 392/392 (100%)
Strand = Plus / Plus


Query: 1 ataataaatgtcagttgcatcaaggataagagataaattaaagaataatttagagagtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataataaatgtcagttgcatcaaggataagagataaattaaagaataatttagagagtag 60


Query: 61 tggtggacattcagtagttacaagtggtacaaaagtaattagatatagagcaggtcaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggtggacattcagtagttacaagtggtacaaaagtaattagatatagagcaggtcaaag 120


Query: 121 accagattatgcagaagcggaagatgatcaagatagtcatttttcaaatattcaaaatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accagattatgcagaagcggaagatgatcaagatagtcatttttcaaatattcaaaatca 180


Query: 181 aaaatcaattaaagaagcagaaacaaatgatccgagattagctagatttaaaaataggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaatcaattaaagaagcagaaacaaatgatccgagattagctagatttaaaaataggtc 240


Query: 241 ttcaaatcaagatgaaccacaatctgttgaagaaagaaaagcaagtagaagaagacatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcaaatcaagatgaaccacaatctgttgaagaaagaaaagcaagtagaagaagacatca 300


Query: 301 tgatgatgataatgataatgataccaccaccacaactacaaccactacatcaagaagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgatgatgataatgataatgataccaccaccacaactacaaccactacatcaagaagaat 360


Query: 361 acaaaaaacagagattataaaagaagatgatg 392
||||||||||||||||||||||||||||||||
Sbjct: 361 acaaaaaacagagattataaaagaagatgatg 392


Score = 123 bits (62), Expect = 3e-28
Identities = 95/95 (100%)
Strand = Plus / Plus


Query: 567 agtnaaaaactattatggattcaaaaanaattggagngngttagantgganattnaaact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agtnaaaaactattatggattcaaaaanaattggagngngttagantgganattnaaact 626


Query: 627 cgtntattggcanaattttaaaanaaanaatttgc 661
|||||||||||||||||||||||||||||||||||
Sbjct: 627 cgtntattggcanaattttaaaanaaanaatttgc 661


Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 416 gatacaaaaaaggatcata 434
|||||||||||||||||||
Sbjct: 416 gatacaaaaaaggatcata 434


>Contig-U11812-1 (Contig-U11812-1Q) /CSM_Contig/Contig-U11812-1Q.Seq.d
Length = 1354

Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 300 atgatgatgataatgataatgat 322
|||||||||||||||||||||||
Sbjct: 761 atgatgatgataatgataatgat 783


Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 303 atgatgataatgataatga 321
|||||||||||||||||||
Sbjct: 998 atgatgataatgataatga 1016


Score = 32.2 bits (16), Expect = 0.74
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 300 atgatgatgataatgataatgata 323
|||||||| || ||||||||||||
Sbjct: 989 atgatgataatgatgataatgata 1012


Score = 32.2 bits (16), Expect = 0.74
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 301 tgatgatgataatgat 316
||||||||||||||||
Sbjct: 987 tgatgatgataatgat 1002


Score = 32.2 bits (16), Expect = 0.74
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 297 atcatgatgatgataatgat 316
|||||||||||||| |||||
Sbjct: 875 atcatgatgatgatgatgat 894


>Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Contig-U13880-1Q.Seq.d
Length = 1592

Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 322 taccaccaccacaactacaac 342
|||||||||||||||||||||
Sbjct: 980 taccaccaccacaactacaac 1000


Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 300 atgatgatgataatgataatgata 323
||||| ||||||||||||||||||
Sbjct: 913 atgataatgataatgataatgata 936


Score = 38.2 bits (19), Expect = 0.012
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 300 atgatgatgataatgataatgat 322
||||||||||| |||||||||||
Sbjct: 1078 atgatgatgatgatgataatgat 1100


Score = 32.2 bits (16), Expect = 0.74
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 300 atgatgatgataatgataatgata 323
||||||||||| ||||| ||||||
Sbjct: 1072 atgatgatgatgatgatgatgata 1095


Score = 32.2 bits (16), Expect = 0.74
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 300 atgatgatgataatgataat 319
||||| ||||||||||||||
Sbjct: 919 atgataatgataatgataat 938


Score = 30.2 bits (15), Expect = 2.9
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 300 atgatgatgataatgataatgat 322
||||||||||| ||||| |||||
Sbjct: 1069 atgatgatgatgatgatgatgat 1091


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,050
Number of Sequences: 6905
Number of extensions: 11050
Number of successful extensions: 2045
Number of sequences better than 10.0: 386
length of query: 675
length of database: 5,674,871
effective HSP length: 16
effective length of query: 659
effective length of database: 5,564,391
effective search space: 3666933669
effective search space used: 3666933669
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.18
Homology vs DNA
Query= Contig-U09794-1 (Contig-U09794-1Q) /CSM_Contig/Contig-U09794-1Q.Seq.d
(675 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU265574) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU265575) Dictyostelium discoideum vegetative cDNA clone:VS... 129 1e-25 1
(BJ350485) Dictyostelium discoideum cDNA clone:dda40c05, 3' ... 42 3e-04 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 0.007 7
(DV148685) CV03077A2H02.f1 CV03-normalized library Euphorbia... 54 0.007 1
(AC019853) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 0.010 4
(AC010061) Drosophila melanogaster 3L BAC RP98-11F16 (Roswel... 46 0.013 3
(CR925784) Zebrafish DNA sequence from clone DKEYP-104A3 in ... 48 0.014 2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 42 0.015 4
(AC116541) Drosophila melanogaster clone RP98-33P13, WORKING... 46 0.017 3
(AC157234) Bos taurus clone CH240-69G8, WORKING DRAFT SEQUEN... 52 0.027 1
(AC153408) Bos taurus clone CH240-21E8, WORKING DRAFT SEQUEN... 52 0.027 1
(DX899037) KBrH030K23F KBrH, Brassica rapa HindIII BAC libra... 52 0.027 1
(DX898947) KBrH030I23F KBrH, Brassica rapa HindIII BAC libra... 52 0.027 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 46 0.033 10
(AC176909) Strongylocentrotus purpuratus clone R3-1104M4, WO... 38 0.034 3
(AC179070) Strongylocentrotus purpuratus clone R3-4009E11, W... 46 0.046 8
(AC218350) Bos taurus clone CH240-286F18, WORKING DRAFT SEQU... 44 0.059 2
(AC161386) Pan troglodytes BAC clone CH251-497P4 from chromo... 48 0.061 3
(AC110476) Rattus norvegicus clone CH230-26P9, *** SEQUENCIN... 38 0.065 2
(AC111790) Rattus norvegicus clone CH230-187E18, WORKING DRA... 38 0.066 2
(AC180970) Strongylocentrotus purpuratus clone R3-3059B02, W... 36 0.066 2
(AC149929) Strongylocentrotus purpuratus clone R3-12L22, WOR... 36 0.066 2
(AC176587) Strongylocentrotus purpuratus clone R3-3077J17, W... 36 0.067 2
(AC178350) Strongylocentrotus purpuratus clone R3-3105J21, W... 40 0.067 2
(AC176410) Strongylocentrotus purpuratus clone R3-12K3, WORK... 48 0.068 3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 40 0.087 8
(AC201068) Strongylocentrotus purpuratus clone R3-13A16, WOR... 50 0.11 1
(AC184206) Strongylocentrotus purpuratus clone R3-3026A14, W... 50 0.11 1
(AC180989) Strongylocentrotus purpuratus clone R3-3058M24, W... 50 0.11 1
(AC180510) Strongylocentrotus purpuratus clone R3-30A5, WORK... 50 0.11 1
(AC180018) Strongylocentrotus purpuratus clone R3-23H23, WOR... 50 0.11 1
(AC179183) Strongylocentrotus purpuratus clone R3-4019A9, WO... 50 0.11 1
(AC177770) Strongylocentrotus purpuratus clone R3-1005B24, W... 50 0.11 1
(AC177167) Strongylocentrotus purpuratus clone R3-4015L06, W... 50 0.11 1
(AC168611) Strongylocentrotus purpuratus clone R3-3046G5, WO... 50 0.11 1
(ES695611) RC0-DP0003-150700-021-B01 DP-ORESTES Drosophila m... 50 0.11 1
(DY769801) 72H_new21_K08 Bicyclus anynana wings - 72H pupae ... 50 0.11 1
(FE826962) CCAG40652.g1 CCAG Petrolisthes cinctipes heart, g... 50 0.11 1
(EY498161) CBBP3972.fwd CBBP Hirudo medicinalis hermaphrodit... 50 0.11 1
(EY498160) CBBP3972.rev CBBP Hirudo medicinalis hermaphrodit... 50 0.11 1
(EY242694) CATY3348.rev CATY Aspergillus niger fungal filame... 50 0.11 1
(AZ239771) RPCI-23-74O17.TV RPCI-23 Mus musculus genomic clo... 44 0.11 2
(AC180457) Strongylocentrotus purpuratus clone R3-3101B24, W... 48 0.17 3
(BX005351) Zebrafish DNA sequence from clone CH211-266A16 in... 38 0.23 4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 46 0.24 2
(AC176673) Strongylocentrotus purpuratus clone R3-112F22, WO... 36 0.25 2
(X96869) D.discoideum dokA gene. 36 0.29 2
(AC175997) Strongylocentrotus purpuratus clone R3-3028G19, W... 40 0.32 2
(EK269759) 1095462252224 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.33 2
(CU655833) Zebrafish DNA sequence from clone CH1073-171B5. 48 0.43 1
(CU499339) Zebrafish DNA sequence from clone CH1073-98B19 in... 48 0.43 1
(CR848711) Zebrafish DNA sequence from clone CH211-226K23 in... 48 0.43 1
(CR385052) Zebrafish DNA sequence from clone CH211-166F3 in ... 48 0.43 1
(CR354563) Zebrafish DNA sequence from clone DKEY-210I1 in l... 48 0.43 1
(AC189664) Gallus gallus BAC clone CH261-179B13 from chromos... 48 0.43 1
(AB029447) Anguilla japonica CYP1A9 gene for cytochrome P450... 48 0.43 1
(AL953853) Mouse DNA sequence from clone RP23-6M16 on chromo... 48 0.43 1
(AL772313) Mouse DNA sequence from clone RP23-128J10 on chro... 48 0.43 1
(AL683839) Mouse DNA sequence from clone RP23-183N16 on chro... 48 0.43 1
(AC136003) Mus musculus chromosome 15, clone RP23-191C24, co... 48 0.43 1
(AC134546) Mus musculus BAC clone RP24-471H17 from chromosom... 48 0.43 1
(AC124685) Mus musculus BAC clone RP24-385O22 from chromosom... 48 0.43 1
(AC124585) Mus musculus BAC clone RP23-130P17 from chromosom... 48 0.43 1
(AC114619) Mus musculus chromosome 5, clone RP24-86I23, comp... 48 0.43 1
(AC114553) Mus musculus chromosome 5, clone RP23-408M16, com... 48 0.43 1
(AC113276) Mus musculus chromosome 5, clone RP23-383E21, com... 48 0.43 1
(AC111013) Mus musculus BAC clone RP24-223F21 from 3, comple... 48 0.43 1
(AC099572) Mus musculus chromosome 15, clone RP23-16A17, com... 48 0.43 1
(AC098720) Mus musculus BAC clone RP23-2N16 from 5, complete... 48 0.43 1
(AC093353) Mus musculus chromosome 10, clone RP23-19C22, com... 48 0.43 1
(AC161005) Pan troglodytes BAC clone CH251-668M6 from chromo... 48 0.43 1
(EU674999) Helianthus petiolaris isolate PetUT5_1 cellulose ... 48 0.43 1
(EU674998) Helianthus petiolaris isolate PetUT5_1 cellulose ... 48 0.43 1
(EU674987) Helianthus petiolaris isolate PetAZ1_2 cellulose ... 48 0.43 1
(EU674986) Helianthus petiolaris isolate PetAZ1_2 cellulose ... 48 0.43 1
(EU674985) Helianthus petiolaris isolate PetAZ1_1 cellulose ... 48 0.43 1
(EU674984) Helianthus petiolaris isolate PetAZ1_1 cellulose ... 48 0.43 1
(EU674981) Helianthus petiolaris isolate PetNM2_1 cellulose ... 48 0.43 1
(EU674980) Helianthus petiolaris isolate PetNM2_1 cellulose ... 48 0.43 1
(CR382139) Debaryomyces hansenii chromosome G of strain CBS7... 48 0.43 1
(AM474607) Vitis vinifera contig VV78X050969.19, whole genom... 48 0.43 1
(AM437347) Vitis vinifera contig VV78X275396.2, whole genome... 48 0.43 1
(AM432915) Vitis vinifera contig VV78X026469.1, whole genome... 48 0.43 1
(AC189591) Brassica rapa subsp. pekinensis clone KBrH013D23,... 48 0.43 1
(AR549084) Sequence 4215 from patent US 6747137. 48 0.43 1
(AC144364) Didelphis virginiana clone LB3-157N2, complete se... 48 0.43 1
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 48 0.43 1
(AF360097) Penaeus (Litopenaeus) vannamei microsatellite TUM... 48 0.43 1
(AF077591) Penaeus monodon clone TUZX4-6:74 microsatellite s... 48 0.43 1
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 48 0.43 1
(AB018798) Plasmodium yoelii gene for P-Type ATPase, complet... 48 0.43 1
(AC083809) Homo sapiens 12 BAC RP11-785D18 (Roswell Park Can... 48 0.43 1
(AC160546) Mus musculus chromosome 3 clone RP23-224K13 map 3... 48 0.43 1
(AC139903) Rattus norvegicus clone CH230-502P14, WORKING DRA... 48 0.43 1
(AC135649) Rattus norvegicus clone CH230-179G10, WORKING DRA... 48 0.43 1
(AC135401) Rattus norvegicus clone CH230-480C22, WORKING DRA... 48 0.43 1
(AC131438) Rattus norvegicus clone CH230-7J20, WORKING DRAFT... 48 0.43 1
(AC126977) Rattus norvegicus clone CH230-11A4, WORKING DRAFT... 48 0.43 1
(AC126522) Rattus norvegicus clone CH230-237H4, WORKING DRAF... 48 0.43 1

>(AU265574) Dictyostelium discoideum vegetative cDNA clone:VSF660,
5' end single read.
Length = 555

Score = 777 bits (392), Expect = 0.0
Identities = 392/392 (100%)
Strand = Plus / Plus


Query: 1 ataataaatgtcagttgcatcaaggataagagataaattaaagaataatttagagagtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataataaatgtcagttgcatcaaggataagagataaattaaagaataatttagagagtag 60


Query: 61 tggtggacattcagtagttacaagtggtacaaaagtaattagatatagagcaggtcaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggtggacattcagtagttacaagtggtacaaaagtaattagatatagagcaggtcaaag 120


Query: 121 accagattatgcagaagcggaagatgatcaagatagtcatttttcaaatattcaaaatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accagattatgcagaagcggaagatgatcaagatagtcatttttcaaatattcaaaatca 180


Query: 181 aaaatcaattaaagaagcagaaacaaatgatccgagattagctagatttaaaaataggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaatcaattaaagaagcagaaacaaatgatccgagattagctagatttaaaaataggtc 240


Query: 241 ttcaaatcaagatgaaccacaatctgttgaagaaagaaaagcaagtagaagaagacatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcaaatcaagatgaaccacaatctgttgaagaaagaaaagcaagtagaagaagacatca 300


Query: 301 tgatgatgataatgataatgataccaccaccacaactacaaccactacatcaagaagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgatgatgataatgataatgataccaccaccacaactacaaccactacatcaagaagaat 360


Query: 361 acaaaaaacagagattataaaagaagatgatg 392
||||||||||||||||||||||||||||||||
Sbjct: 361 acaaaaaacagagattataaaagaagatgatg 392

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 626,645,516
Number of extensions: 44219762
Number of successful extensions: 4205009
Number of sequences better than 10.0: 1187
Length of query: 675
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 651
Effective length of database: 97,308,875,965
Effective search space: 63348078253215
Effective search space used: 63348078253215
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09794-1 (Contig-U09794-1Q) /CSM_Contig/Contig-U09794-1Q.Seq.d
(675 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54SU3) RecName: Full=Protein MFAP1 homolog; 181 2e-44
(Q9CQU1) RecName: Full=Microfibrillar-associated protein 1; &AK... 48 3e-04
AB168920_1(AB168920|pid:none) Macaca fascicularis testis cDNA, c... 48 3e-04
BC052118_1(BC052118|pid:none) Danio rerio microfibrillar-associa... 48 3e-04
AK012688_1(AK012688|pid:none) Mus musculus 10, 11 days embryo wh... 48 3e-04
BC044036_1(BC044036|pid:none) Xenopus laevis microfibrillar-asso... 45 0.002
EF364555_1(EF364555|pid:none) Macrobrachium rosenbergii clone MA... 38 0.24
AF071527_14(AF071527|pid:none) Arabidopsis thaliana BAC F9H3, fr... 35 2.0
AK226702_1(AK226702|pid:none) Arabidopsis thaliana mRNA for puta... 35 2.0

>(Q54SU3) RecName: Full=Protein MFAP1 homolog;
Length = 460

Score = 181 bits (458), Expect = 2e-44
Identities = 96/124 (77%), Positives = 96/124 (77%)
Frame = +2

Query: 8 MSVASRIRDKLKNNLEXXXXXXXXXXXXKVIRYRAGQRPDYAEAEDDQDSHFSNIQNQKS 187
MSVASRIRDKLKNNLE KVIRYRAGQRPDYAEAEDDQDSHFSNIQNQKS
Sbjct: 1 MSVASRIRDKLKNNLESSGGHSVVTSGTKVIRYRAGQRPDYAEAEDDQDSHFSNIQNQKS 60

Query: 188 IKEAETNDPRLARFKNRSSNQDEPQSVEERKASRRRHHXXXXXXXXXXXXXXXXSRRIQK 367
IKEAETNDPRLARFKNRSSNQDEPQSVEERKASRRRHH SRRIQK
Sbjct: 61 IKEAETNDPRLARFKNRSSNQDEPQSVEERKASRRRHHDDDNDNDTTTTTTTTTSRRIQK 120

Query: 368 TEII 379
TEII
Sbjct: 121 TEII 124

Score = 39.3 bits (90), Expect = 0.11
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = +3

Query: 567 SXKLLWIQKXLEXVRXXIXTRXLAXF*XKXFAKXXA 674
S KLLWIQ+ LE VR I TR LA F K FA+ A
Sbjct: 292 SKKLLWIQRELERVRLEIHTRLLAEFEKKEFARRRA 327

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 415,286,807
Number of extensions: 5569519
Number of successful extensions: 14719
Number of sequences better than 10.0: 9
Number of HSP's gapped: 14701
Number of HSP's successfully gapped: 10
Length of query: 225
Length of database: 1,040,966,779
Length adjustment: 124
Effective length of query: 101
Effective length of database: 643,635,439
Effective search space: 65007179339
Effective search space used: 65007179339
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.55 gvh: 0.32 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.02
nuc: 0.15 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U09794-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0