Contig-U09794-1 |
Contig ID |
Contig-U09794-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
665 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
5526117 |
End point |
5525451 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U09794 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.18 |
Homology vs DNA |
Query= Contig-U09794-1 (Contig-U09794-1Q) /CSM_Contig/Contig-U09794-1Q.Seq.d (675 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU265574) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU265575) Dictyostelium discoideum vegetative cDNA clone:VS... 129 1e-25 1 (BJ350485) Dictyostelium discoideum cDNA clone:dda40c05, 3' ... 42 3e-04 2 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 0.007 7 (DV148685) CV03077A2H02.f1 CV03-normalized library Euphorbia... 54 0.007 1 (AC019853) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 0.010 4 (AC010061) Drosophila melanogaster 3L BAC RP98-11F16 (Roswel... 46 0.013 3 (CR925784) Zebrafish DNA sequence from clone DKEYP-104A3 in ... 48 0.014 2 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 42 0.015 4 (AC116541) Drosophila melanogaster clone RP98-33P13, WORKING... 46 0.017 3 (AC157234) Bos taurus clone CH240-69G8, WORKING DRAFT SEQUEN... 52 0.027 1 (AC153408) Bos taurus clone CH240-21E8, WORKING DRAFT SEQUEN... 52 0.027 1 (DX899037) KBrH030K23F KBrH, Brassica rapa HindIII BAC libra... 52 0.027 1 (DX898947) KBrH030I23F KBrH, Brassica rapa HindIII BAC libra... 52 0.027 1 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 46 0.033 10 (AC176909) Strongylocentrotus purpuratus clone R3-1104M4, WO... 38 0.034 3 (AC179070) Strongylocentrotus purpuratus clone R3-4009E11, W... 46 0.046 8 (AC218350) Bos taurus clone CH240-286F18, WORKING DRAFT SEQU... 44 0.059 2 (AC161386) Pan troglodytes BAC clone CH251-497P4 from chromo... 48 0.061 3 (AC110476) Rattus norvegicus clone CH230-26P9, *** SEQUENCIN... 38 0.065 2 (AC111790) Rattus norvegicus clone CH230-187E18, WORKING DRA... 38 0.066 2 (AC180970) Strongylocentrotus purpuratus clone R3-3059B02, W... 36 0.066 2 (AC149929) Strongylocentrotus purpuratus clone R3-12L22, WOR... 36 0.066 2 (AC176587) Strongylocentrotus purpuratus clone R3-3077J17, W... 36 0.067 2 (AC178350) Strongylocentrotus purpuratus clone R3-3105J21, W... 40 0.067 2 (AC176410) Strongylocentrotus purpuratus clone R3-12K3, WORK... 48 0.068 3 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 40 0.087 8 (AC201068) Strongylocentrotus purpuratus clone R3-13A16, WOR... 50 0.11 1 (AC184206) Strongylocentrotus purpuratus clone R3-3026A14, W... 50 0.11 1 (AC180989) Strongylocentrotus purpuratus clone R3-3058M24, W... 50 0.11 1 (AC180510) Strongylocentrotus purpuratus clone R3-30A5, WORK... 50 0.11 1 (AC180018) Strongylocentrotus purpuratus clone R3-23H23, WOR... 50 0.11 1 (AC179183) Strongylocentrotus purpuratus clone R3-4019A9, WO... 50 0.11 1 (AC177770) Strongylocentrotus purpuratus clone R3-1005B24, W... 50 0.11 1 (AC177167) Strongylocentrotus purpuratus clone R3-4015L06, W... 50 0.11 1 (AC168611) Strongylocentrotus purpuratus clone R3-3046G5, WO... 50 0.11 1 (ES695611) RC0-DP0003-150700-021-B01 DP-ORESTES Drosophila m... 50 0.11 1 (DY769801) 72H_new21_K08 Bicyclus anynana wings - 72H pupae ... 50 0.11 1 (FE826962) CCAG40652.g1 CCAG Petrolisthes cinctipes heart, g... 50 0.11 1 (EY498161) CBBP3972.fwd CBBP Hirudo medicinalis hermaphrodit... 50 0.11 1 (EY498160) CBBP3972.rev CBBP Hirudo medicinalis hermaphrodit... 50 0.11 1 (EY242694) CATY3348.rev CATY Aspergillus niger fungal filame... 50 0.11 1 (AZ239771) RPCI-23-74O17.TV RPCI-23 Mus musculus genomic clo... 44 0.11 2 (AC180457) Strongylocentrotus purpuratus clone R3-3101B24, W... 48 0.17 3 (BX005351) Zebrafish DNA sequence from clone CH211-266A16 in... 38 0.23 4 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 46 0.24 2 (AC176673) Strongylocentrotus purpuratus clone R3-112F22, WO... 36 0.25 2 (X96869) D.discoideum dokA gene. 36 0.29 2 (AC175997) Strongylocentrotus purpuratus clone R3-3028G19, W... 40 0.32 2 (EK269759) 1095462252224 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.33 2 (CU655833) Zebrafish DNA sequence from clone CH1073-171B5. 48 0.43 1 (CU499339) Zebrafish DNA sequence from clone CH1073-98B19 in... 48 0.43 1 (CR848711) Zebrafish DNA sequence from clone CH211-226K23 in... 48 0.43 1 (CR385052) Zebrafish DNA sequence from clone CH211-166F3 in ... 48 0.43 1 (CR354563) Zebrafish DNA sequence from clone DKEY-210I1 in l... 48 0.43 1 (AC189664) Gallus gallus BAC clone CH261-179B13 from chromos... 48 0.43 1 (AB029447) Anguilla japonica CYP1A9 gene for cytochrome P450... 48 0.43 1 (AL953853) Mouse DNA sequence from clone RP23-6M16 on chromo... 48 0.43 1 (AL772313) Mouse DNA sequence from clone RP23-128J10 on chro... 48 0.43 1 (AL683839) Mouse DNA sequence from clone RP23-183N16 on chro... 48 0.43 1 (AC136003) Mus musculus chromosome 15, clone RP23-191C24, co... 48 0.43 1 (AC134546) Mus musculus BAC clone RP24-471H17 from chromosom... 48 0.43 1 (AC124685) Mus musculus BAC clone RP24-385O22 from chromosom... 48 0.43 1 (AC124585) Mus musculus BAC clone RP23-130P17 from chromosom... 48 0.43 1 (AC114619) Mus musculus chromosome 5, clone RP24-86I23, comp... 48 0.43 1 (AC114553) Mus musculus chromosome 5, clone RP23-408M16, com... 48 0.43 1 (AC113276) Mus musculus chromosome 5, clone RP23-383E21, com... 48 0.43 1 (AC111013) Mus musculus BAC clone RP24-223F21 from 3, comple... 48 0.43 1 (AC099572) Mus musculus chromosome 15, clone RP23-16A17, com... 48 0.43 1 (AC098720) Mus musculus BAC clone RP23-2N16 from 5, complete... 48 0.43 1 (AC093353) Mus musculus chromosome 10, clone RP23-19C22, com... 48 0.43 1 (AC161005) Pan troglodytes BAC clone CH251-668M6 from chromo... 48 0.43 1 (EU674999) Helianthus petiolaris isolate PetUT5_1 cellulose ... 48 0.43 1 (EU674998) Helianthus petiolaris isolate PetUT5_1 cellulose ... 48 0.43 1 (EU674987) Helianthus petiolaris isolate PetAZ1_2 cellulose ... 48 0.43 1 (EU674986) Helianthus petiolaris isolate PetAZ1_2 cellulose ... 48 0.43 1 (EU674985) Helianthus petiolaris isolate PetAZ1_1 cellulose ... 48 0.43 1 (EU674984) Helianthus petiolaris isolate PetAZ1_1 cellulose ... 48 0.43 1 (EU674981) Helianthus petiolaris isolate PetNM2_1 cellulose ... 48 0.43 1 (EU674980) Helianthus petiolaris isolate PetNM2_1 cellulose ... 48 0.43 1 (CR382139) Debaryomyces hansenii chromosome G of strain CBS7... 48 0.43 1 (AM474607) Vitis vinifera contig VV78X050969.19, whole genom... 48 0.43 1 (AM437347) Vitis vinifera contig VV78X275396.2, whole genome... 48 0.43 1 (AM432915) Vitis vinifera contig VV78X026469.1, whole genome... 48 0.43 1 (AC189591) Brassica rapa subsp. pekinensis clone KBrH013D23,... 48 0.43 1 (AR549084) Sequence 4215 from patent US 6747137. 48 0.43 1 (AC144364) Didelphis virginiana clone LB3-157N2, complete se... 48 0.43 1 (CR382399) Plasmodium falciparum chromosome 6, complete sequ... 48 0.43 1 (AF360097) Penaeus (Litopenaeus) vannamei microsatellite TUM... 48 0.43 1 (AF077591) Penaeus monodon clone TUZX4-6:74 microsatellite s... 48 0.43 1 (AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 48 0.43 1 (AB018798) Plasmodium yoelii gene for P-Type ATPase, complet... 48 0.43 1 (AC083809) Homo sapiens 12 BAC RP11-785D18 (Roswell Park Can... 48 0.43 1 (AC160546) Mus musculus chromosome 3 clone RP23-224K13 map 3... 48 0.43 1 (AC139903) Rattus norvegicus clone CH230-502P14, WORKING DRA... 48 0.43 1 (AC135649) Rattus norvegicus clone CH230-179G10, WORKING DRA... 48 0.43 1 (AC135401) Rattus norvegicus clone CH230-480C22, WORKING DRA... 48 0.43 1 (AC131438) Rattus norvegicus clone CH230-7J20, WORKING DRAFT... 48 0.43 1 (AC126977) Rattus norvegicus clone CH230-11A4, WORKING DRAFT... 48 0.43 1 (AC126522) Rattus norvegicus clone CH230-237H4, WORKING DRAF... 48 0.43 1
>(AU265574) Dictyostelium discoideum vegetative cDNA clone:VSF660, 5' end single read. Length = 555
Score = 777 bits (392), Expect = 0.0 Identities = 392/392 (100%) Strand = Plus / Plus
Query: 1 ataataaatgtcagttgcatcaaggataagagataaattaaagaataatttagagagtag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ataataaatgtcagttgcatcaaggataagagataaattaaagaataatttagagagtag 60
Query: 61 tggtggacattcagtagttacaagtggtacaaaagtaattagatatagagcaggtcaaag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tggtggacattcagtagttacaagtggtacaaaagtaattagatatagagcaggtcaaag 120
Query: 121 accagattatgcagaagcggaagatgatcaagatagtcatttttcaaatattcaaaatca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 accagattatgcagaagcggaagatgatcaagatagtcatttttcaaatattcaaaatca 180
Query: 181 aaaatcaattaaagaagcagaaacaaatgatccgagattagctagatttaaaaataggtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aaaatcaattaaagaagcagaaacaaatgatccgagattagctagatttaaaaataggtc 240
Query: 241 ttcaaatcaagatgaaccacaatctgttgaagaaagaaaagcaagtagaagaagacatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ttcaaatcaagatgaaccacaatctgttgaagaaagaaaagcaagtagaagaagacatca 300
Query: 301 tgatgatgataatgataatgataccaccaccacaactacaaccactacatcaagaagaat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tgatgatgataatgataatgataccaccaccacaactacaaccactacatcaagaagaat 360
Query: 361 acaaaaaacagagattataaaagaagatgatg 392 |||||||||||||||||||||||||||||||| Sbjct: 361 acaaaaaacagagattataaaagaagatgatg 392
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 626,645,516 Number of extensions: 44219762 Number of successful extensions: 4205009 Number of sequences better than 10.0: 1187 Length of query: 675 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 651 Effective length of database: 97,308,875,965 Effective search space: 63348078253215 Effective search space used: 63348078253215 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.26 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |