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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09760-1
Contig ID Contig-U09760-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09760-1 (Contig-U09760-1Q) /CSM_Contig/Contig-U09760-1Q.Seq.d
ACTGTTGGCCTACTGGCAAAAGCAAGTAAAGATTTTAAAAAAGTGAAAAC
TTTTAAAAATGAAAATGAAGTTAATTATGATTTTAACATTTATATTGATG
ATAAAGAATGTGGTACAATTTTTGAACCAGATTTAAATTTAATTCAAAGT
TTTTCAAAGAAATCAAGTTTTGGAAATGGTGTTGACACAGTTTACGATGA
AAACATTAGAAAAGGTTATCATATTGAAGGTAATAGAGTTAAAGTACCAT
TTTTCCAAGAAAAAGCAGAAAATTATAAAGATTATAAAGTAATGAATCAA
TTTGATTTCAAACATCCATTAAAAGAAAATCAATTCTTTTATAAGAAAAC
AAACTATGATCTTGAATTATATAAAATTCATATTTATAATGAAGGTGGTC
ATTTTCAACCACATATCGATACCATTCATTCTAAAAATCATATTGGTACC
TATATTGTTCCATTAGGTGTTGATACATATGAAGGTGGTGAATTTATAAT
CTCTGAAAATGATACATTCGATCAAACAACCATTAATTATAAAATTGNAG
CAAATGATAATAAACTACAAGATTCANTCNANNNNNNNNN----------
NNNNNNNNNNTTTCAAATGGATTGCATTCTATAATGATTGTATTCATACG
GGTTACTCCAGGTTACCAAAGGGTGTTAGAATTGTATTACAATTTAATAT
TCTATTTATTAATGAAGAAAGAAAAGAAAATGAACCACTTATAACTTTTA
AAAGAATGGATGATTTCTTTGAATATAGAAATGAACCAACCGAATATTCT
GAAAAAGATAAATTCTTAACTTTAAATTATCAAAATAAGAATGAATCTGA
AAAAGATTGTTCAATCAAGGCCAATAAAAAACATTTACAAAAGATGATTT
CAATTTTTGAAAATGTAATCAATGAAAGATCAGTAAATTGTGGTATATTC
CTTTCTCATCTTTATAAATCAAATGTTAATGAAAATCATTTGAAAGGTTT
AGATCTTTTGATTTGGAATGAAATTAAAAATTATTTTGGCAGTGAAAGAG
TTCAAGTTTTTACCTTCTTAATTAATAATAGAGGTGATAATCAATTAATC
ATTGAAAAGGTTTCAAATAAAACTATGAATGAACCTGATAAAAGTAAAAA
TAATAAANGTAACACCTCACACAATATTATTTTGTGGTTCTAAANTATGG
TAATTTAAGATGTCTCTTAAGTAGACCACAAGAATATACTGGTAATGATT
CTTATCAACAAGAGGATATTGGTGTATTCTCTGCAATTGTTATTAATAAA
TTAAATACAAATTAAATTTTATAAATAATAAAATAAAATATAATATAATA
TAATAAATAAAAATAATAAAATAAATAG
Gap gap included
Contig length 1368
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4683939
End point 4682610
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09760
List of clone(s) 

est1=VFN374F,1,581
est2=VFN374Z,582,1350
Translated Amino Acid sequence 
TVGLLAKASKDFKKVKTFKNENEVNYDFNIYIDDKECGTIFEPDLNLIQSFSKKSSFGNG
VDTVYDENIRKGYHIEGNRVKVPFFQEKAENYKDYKVMNQFDFKHPLKENQFFYKKTNYD
LELYKIHIYNEGGHFQPHIDTIHSKNHIGTYIVPLGVDTYEGGEFIISENDTFDQTTINY
KIXANDNKLQDSXXXX---

---XXXFKWIAFYNDCIHTGYSRLPKGVRIVLQFNILFINEERKENEPLITFKRMDDFFE
YRNEPTEYSEKDKFLTLNYQNKNESEKDCSIKANKKHLQKMISIFENVINERSVNCGIFL
SHLYKSNVNENHLKGLDLLIWNEIKNYFGSERVQVFTFLINNRGDNQLIIEKVSNKTMNE
PDKSKNNKXNTSHNIILWF*xmvi*dvs*vdhknilvmilinkrilvyslqlllin*iqi
kfyk**nki*yniinknnkin
Translated Amino Acid sequence (All Frames) 
Frame A:
TVGLLAKASKDFKKVKTFKNENEVNYDFNIYIDDKECGTIFEPDLNLIQSFSKKSSFGNG
VDTVYDENIRKGYHIEGNRVKVPFFQEKAENYKDYKVMNQFDFKHPLKENQFFYKKTNYD
LELYKIHIYNEGGHFQPHIDTIHSKNHIGTYIVPLGVDTYEGGEFIISENDTFDQTTINY
KIXANDNKLQDSXXXX---

---xxxxsnglhsimivfirvtpgyqrvlelyynlifyllmkkekkmnhl*llkewmisl
niemnqpnilkkins*l*iikirmnlkkivqsrpikniykr*fqflkm*smkdq*ivvys
flifinqmlmkii*kv*if*fgmklkiilavkefkflps*liieviin*slkrfqikl*m
nlikvkiixvtphtilfcgskxw*fkmslk*ttriyw**flstrgywcilcncy**ikyk
lnfinnkikynii**ikiik*i

Frame B:
llaywqkqvkilkk*kllkmkmklimiltfilmiknvvqflnqi*i*fkvfqrnqvlemv
ltqftmktlekviilkvielkyhfskkkqkiikiik**inlisnih*kkinsfirkqtmi
lnyikfifimkvvifnhisipfilkiilvpilfh*vlihmkvvnl*slkmihsikqplii
klxqmiinykixsxxx---

---xxxfqmdcil**lysygllqvtkgc*nciti*ysiy**rkkrk*ttynf*kng*fl*
i*k*tnrif*kr*ilnfklsk*e*i*krlfnqgq*ktftkddfnf*kcnq*kisklwyip
fssl*ikc**ksferfrsfdle*n*klfwq*ksssfylln***r**sinh*kgfk*nye*
t**k*k**x*hltqyyfvvlxygnlrcllsrpqeytgndsyqqedigvfsaivinklntn
*il*iik*nii*ynk*k**nk*

Frame C:
cwptgksk*rf*ksenf*k*k*s*l*f*hly***rmwynf*trfkfnskffkeikfwkwc
*hslr*kh*krlsy*r**s*stifprksrkl*rl*snesi*fqtsikrksill*enkl*s
*ii*nsyl**rwsfsttyryhsf*ksywylycsirc*yi*rw*iynl*k*yirsnnh*l*
nxsk***ttrfxxxxx---

---XXXFKWIAFYNDCIHTGYSRLPKGVRIVLQFNILFINEERKENEPLITFKRMDDFFE
YRNEPTEYSEKDKFLTLNYQNKNESEKDCSIKANKKHLQKMISIFENVINERSVNCGIFL
SHLYKSNVNENHLKGLDLLIWNEIKNYFGSERVQVFTFLINNRGDNQLIIEKVSNKTMNE
PDKSKNNKXNTSHNIILWF*xmvi*dvs*vdhknilvmilinkrilvyslqlllin*iqi
kfyk**nki*yniinknnkin
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09760-1 (Contig-U09760-1Q)
/CSM_Contig/Contig-U09760-1Q.Seq.d
         (1378 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09760-1 (Contig-U09760-1Q) /CSM_Contig/Conti...  1322  0.0
Contig-U11490-1 (Contig-U11490-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U09517-1 (Contig-U09517-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13406-1 (Contig-U13406-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U09053-1 (Contig-U09053-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U06714-1 (Contig-U06714-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti...    36  0.098
Contig-U12387-1 (Contig-U12387-1Q) /CSM_Contig/Conti...    36  0.098
Contig-U06322-1 (Contig-U06322-1Q) /CSM_Contig/Conti...    36  0.098
Contig-U06309-1 (Contig-U06309-1Q) /CSM_Contig/Conti...    36  0.098

>Contig-U09760-1 (Contig-U09760-1Q) /CSM_Contig/Contig-U09760-1Q.Seq.d
          Length = 1378

 Score = 1322 bits (667), Expect = 0.0
 Identities = 673/673 (100%)
 Strand = Plus / Plus

                                                                        
Query: 611  tttcaaatggattgcattctataatgattgtattcatacgggttactccaggttaccaaa 670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611  tttcaaatggattgcattctataatgattgtattcatacgggttactccaggttaccaaa 670

                                                                        
Query: 671  gggtgttagaattgtattacaatttaatattctatttattaatgaagaaagaaaagaaaa 730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671  gggtgttagaattgtattacaatttaatattctatttattaatgaagaaagaaaagaaaa 730

                                                                        
Query: 731  tgaaccacttataacttttaaaagaatggatgatttctttgaatatagaaatgaaccaac 790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  tgaaccacttataacttttaaaagaatggatgatttctttgaatatagaaatgaaccaac 790

                                                                        
Query: 791  cgaatattctgaaaaagataaattcttaactttaaattatcaaaataagaatgaatctga 850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  cgaatattctgaaaaagataaattcttaactttaaattatcaaaataagaatgaatctga 850

                                                                        
Query: 851  aaaagattgttcaatcaaggccaataaaaaacatttacaaaagatgatttcaatttttga 910
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  aaaagattgttcaatcaaggccaataaaaaacatttacaaaagatgatttcaatttttga 910

                                                                        
Query: 911  aaatgtaatcaatgaaagatcagtaaattgtggtatattcctttctcatctttataaatc 970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  aaatgtaatcaatgaaagatcagtaaattgtggtatattcctttctcatctttataaatc 970

                                                                        
Query: 971  aaatgttaatgaaaatcatttgaaaggtttagatcttttgatttggaatgaaattaaaaa 1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  aaatgttaatgaaaatcatttgaaaggtttagatcttttgatttggaatgaaattaaaaa 1030

                                                                        
Query: 1031 ttattttggcagtgaaagagttcaagtttttaccttcttaattaataatagaggtgataa 1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 ttattttggcagtgaaagagttcaagtttttaccttcttaattaataatagaggtgataa 1090

                                                                        
Query: 1091 tcaattaatcattgaaaaggtttcaaataaaactatgaatgaacctgataaaagtaaaaa 1150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 tcaattaatcattgaaaaggtttcaaataaaactatgaatgaacctgataaaagtaaaaa 1150

                                                                        
Query: 1151 taataaangtaacacctcacacaatattattttgtggttctaaantatggtaatttaaga 1210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 taataaangtaacacctcacacaatattattttgtggttctaaantatggtaatttaaga 1210

                                                                        
Query: 1211 tgtctcttaagtagaccacaagaatatactggtaatgattcttatcaacaagaggatatt 1270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 tgtctcttaagtagaccacaagaatatactggtaatgattcttatcaacaagaggatatt 1270

                         
Query: 1271 ggtgtattctctg 1283
            |||||||||||||
Sbjct: 1271 ggtgtattctctg 1283


 Score = 1007 bits (508), Expect = 0.0
 Identities = 511/511 (100%)
 Strand = Plus / Plus

                                                                       
Query: 66  tgaagttaattatgattttaacatttatattgatgataaagaatgtggtacaatttttga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tgaagttaattatgattttaacatttatattgatgataaagaatgtggtacaatttttga 125

                                                                       
Query: 126 accagatttaaatttaattcaaagtttttcaaagaaatcaagttttggaaatggtgttga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 accagatttaaatttaattcaaagtttttcaaagaaatcaagttttggaaatggtgttga 185

                                                                       
Query: 186 cacagtttacgatgaaaacattagaaaaggttatcatattgaaggtaatagagttaaagt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cacagtttacgatgaaaacattagaaaaggttatcatattgaaggtaatagagttaaagt 245

                                                                       
Query: 246 accatttttccaagaaaaagcagaaaattataaagattataaagtaatgaatcaatttga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 accatttttccaagaaaaagcagaaaattataaagattataaagtaatgaatcaatttga 305

                                                                       
Query: 306 tttcaaacatccattaaaagaaaatcaattcttttataagaaaacaaactatgatcttga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttcaaacatccattaaaagaaaatcaattcttttataagaaaacaaactatgatcttga 365

                                                                       
Query: 366 attatataaaattcatatttataatgaaggtggtcattttcaaccacatatcgataccat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attatataaaattcatatttataatgaaggtggtcattttcaaccacatatcgataccat 425

                                                                       
Query: 426 tcattctaaaaatcatattggtacctatattgttccattaggtgttgatacatatgaagg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcattctaaaaatcatattggtacctatattgttccattaggtgttgatacatatgaagg 485

                                                                       
Query: 486 tggtgaatttataatctctgaaaatgatacattcgatcaaacaaccattaattataaaat 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tggtgaatttataatctctgaaaatgatacattcgatcaaacaaccattaattataaaat 545

                                          
Query: 546 tgnagcaaatgataataaactacaagattca 576
           |||||||||||||||||||||||||||||||
Sbjct: 546 tgnagcaaatgataataaactacaagattca 576


 Score = 34.2 bits (17), Expect = 0.39
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 1  actgttggcctactggc 17
          |||||||||||||||||
Sbjct: 1  actgttggcctactggc 17


>Contig-U11490-1 (Contig-U11490-1Q) /CSM_Contig/Contig-U11490-1Q.Seq.d
          Length = 956

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 811 aattcttaactttaaattatcaaaa 835
           |||||| ||||||||||||||||||
Sbjct: 828 aattctcaactttaaattatcaaaa 852


>Contig-U09517-1 (Contig-U09517-1Q) /CSM_Contig/Contig-U09517-1Q.Seq.d
          Length = 1004

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1017 aatgaaattaaaaattatttt 1037
            |||||||||||||||||||||
Sbjct: 992  aatgaaattaaaaattatttt 972


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,648
Number of Sequences: 6905
Number of extensions: 28648
Number of successful extensions: 3772
Number of sequences better than 10.0: 748
length of query: 1378
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1362
effective length of database: 5,564,391
effective search space: 7578700542
effective search space used: 7578700542
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.17
Homology vs DNA 
Query= Contig-U09760-1 (Contig-U09760-1Q) /CSM_Contig/Contig-U09760-1Q.Seq.d
         (1378 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ435644) Dictyostelium discoideum cDNA clone:ddv27d19, 3' ...  1324   0.0    1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...  1007   0.0    5
(BJ416920) Dictyostelium discoideum cDNA clone:ddv27d19, 5' ...  1007   0.0    2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   3e-04  18
(CP000727) Clostridium botulinum A str. Hall, complete genome.     38   3e-04  20
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   5e-04  23
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   0.001  15
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    38   0.001  20
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    38   0.003  20
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    38   0.003  14
(AE002147) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    48   0.011  5
(EJ419444) 1093012220898 Global-Ocean-Sampling_GS-28-01-01-1...    38   0.015  4
(AC174374) Medicago truncatula chromosome 6 clone mth2-54b11...    50   0.015  6
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.018  20
(EF568108) Glossina pallidipes salivary gland hypertrophy vi...    40   0.019  9
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    36   0.021  20
(FG337391) gmnlla_0032p07.t7 Gadus morhua larvae library Gad...    42   0.024  2
(ER935891) D128 Staphylococcus xylosus 00-1747 subtracted li...    52   0.028  2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    38   0.032  18
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    32   0.034  13
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    44   0.034  16
(AC090096) Homo sapiens chromosome 8, clone RP11-159C14, com...    44   0.037  10
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.043  16
(AC201706) Otolemur garnettii clone CH256-534J21, WORKING DR...    44   0.057  5
(AE017308) Mycoplasma mobile 163K complete genome.                 30   0.057  23
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.062  14
(CP000395) Borrelia afzelii PKo, complete genome.                  38   0.082  23
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   0.095  15
(AP007996) Lotus japonicus genomic DNA, chromosome 1, clone:...    36   0.095  8
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    34   0.11   23
(AC147530) Otolemur garnettii clone CH256-45C15, WORKING DRA...    44   0.12   5
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   0.12   16
(AC172374) Pan troglodytes BAC clone CH251-119H6 from chromo...    36   0.16   6
(CS741911) Sequence 9907 from Patent WO2005083127.                 38   0.16   10
(AF252279) Homo sapiens SCA8 gene, partial sequence; and Kel...    36   0.16   8
(AL672139) Zebrafish DNA sequence from clone XX-198H22.            42   0.17   5
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    32   0.18   19
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   0.20   12
(CU469553) Medicago truncatula chromosome 5 clone mth2-57m18...    50   0.23   1
(CU326394) Medicago truncatula chromosome 5 clone mth2-12h14...    50   0.23   1
(CT025156) M.truncatula DNA sequence from clone MTH2-117A9 o...    50   0.23   1
(AC170799) Medicago truncatula clone mth2-194j10, complete s...    50   0.23   1
(AC156260) Medicago truncatula clone mth2-124n5, complete se...    50   0.23   1
(AC139853) Medicago truncatula chromosome 6 clone mth2-13d20...    50   0.23   1
(AC202659) Spermophilus tridecemlineatus clone VMRC20-239H7,...    50   0.23   1
(DH453704) Macropus eugenii DNA with T3 primer, fosmid clone...    50   0.23   1
(DH451842) Macropus eugenii DNA with T3 primer, fosmid clone...    50   0.23   1
(DH449932) Macropus eugenii DNA with T3 primer, fosmid clone...    50   0.23   1
(CR328504) mte1-57F5FM1 BAC end, cultivar Jemalong A17 of Me...    50   0.23   1
(CG971023) MBEEE88TR mth2 Medicago truncatula genomic clone ...    50   0.23   1
(CG963028) MBEAH37TR mth2 Medicago truncatula genomic clone ...    50   0.23   1
(CG945314) MBEBF73TR mth2 Medicago truncatula genomic clone ...    50   0.23   1
(CG933419) MBEHN84TF mth2 Medicago truncatula genomic clone ...    50   0.23   1
(CG921714) MBEAL22TFB mth2 Medicago truncatula genomic clone...    50   0.23   1
(BZ286580) Mt_H2M02_021D19R MtH2 Medicago truncatula BAC lib...    50   0.23   1
(EX528866) MTGland_A047_2007-07-07/MTGlandA047_A10_040_1 Med...    50   0.23   1
(DQ317523) Glycine max cultivar PI 437654 chloroplast, compl...    34   0.24   12
(EJ898732) 1093018478579 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.25   3
(EV704946) LB02338.C21_B06 GC_BGC-23 Bos taurus cDNA clone I...    42   0.25   2
(AJ814920) Bos sp. EST, clone C0005207a20.                         42   0.26   2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.27   17
(AC161491) Mus musculus chromosome 5 clone RP24-228G24 map 5...    40   0.28   8
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    32   0.29   16
(AC162106) Bos taurus clone CH240-108I9, WORKING DRAFT SEQUE...    34   0.33   11
(AC156514) Bos taurus clone CH240-55E7, WORKING DRAFT SEQUEN...    38   0.39   9
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   0.39   20
(AM487866) Vitis vinifera contig VV78X062043.2, whole genome...    36   0.41   5
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.45   14
(BX927077) Zebrafish DNA sequence from clone DKEY-119M17 in ...    38   0.48   2
(AC146818) Medicago truncatula clone mth2-172p22, WORKING DR...    46   0.49   9
(Z92850) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE...    44   0.50   7
(AC006224) Arabidopsis thaliana chromosome 2 clone MFL8 map ...    38   0.54   7
(AE015927) Clostridium tetani E88, complete genome.                34   0.56   20
(EJ576730) 1092960113630 Global-Ocean-Sampling_GS-29-01-01-1...    38   0.57   2
(AC004004) Homo sapiens DNA from chromosome 19, cosmid R3253...    38   0.58   6
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   0.58   13
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    34   0.59   14
(AC195707) Otolemur garnettii clone CH256-476C14, WORKING DR...    44   0.60   6
(AC031977) Homo sapiens chromosome 1 clone RP11-288O18, WORK...    38   0.62   5
(CU202199) PTB-076K21, complete sequence.                          34   0.62   7
(CR848803) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    34   0.65   13
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.66   15
(AC187838) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    34   0.67   9
(AC148715) Macaca mulatta Major Histocompatibility Complex B...    46   0.67   2
(AC011901) Homo sapiens BAC clone RP11-547P13 from 2, comple...    36   0.68   7
(AP004953) Lotus japonicus genomic DNA, chromosome 3, clone:...    40   0.74   6
(AC139841) Medicago truncatula clone mth2-35g18, WORKING DRA...    36   0.77   7
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.78   13
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.82   19
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    38   0.83   9
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    30   0.86   15
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    32   0.86   11
(CP000742) Methanococcus vannielii SB, complete genome.            34   0.87   22
(AC153868) Mus musculus BAC RP23-384D16 (Roswell Park Cancer...    48   0.89   1
(AC153578) Mus musculus 6 BAC RP23-218P2 (Roswell Park Cance...    48   0.89   1
(AC122284) Mus musculus BAC clone RP23-246A5 from 6, complet...    48   0.89   1
(AM453189) Vitis vinifera contig VV78X111030.73, whole genom...    48   0.89   1
(AL021480) Caenorhabditis elegans YAC Y39E4A.                      48   0.89   1
(AC091564) Homo sapiens chromosome 11, clone RP11-732A19, co...    48   0.89   1
(AC128992) Rattus norvegicus clone CH230-1F16, *** SEQUENCIN...    48   0.89   1

>(BJ435644) Dictyostelium discoideum cDNA clone:ddv27d19, 3' end,
            single read.
          Length = 769

 Score = 1324 bits (668), Expect = 0.0
 Identities = 674/674 (100%)
 Strand = Plus / Minus


Query: 611  tttcaaatggattgcattctataatgattgtattcatacgggttactccaggttaccaaa 670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  tttcaaatggattgcattctataatgattgtattcatacgggttactccaggttaccaaa 710


Query: 671  gggtgttagaattgtattacaatttaatattctatttattaatgaagaaagaaaagaaaa 730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  gggtgttagaattgtattacaatttaatattctatttattaatgaagaaagaaaagaaaa 650


Query: 731  tgaaccacttataacttttaaaagaatggatgatttctttgaatatagaaatgaaccaac 790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  tgaaccacttataacttttaaaagaatggatgatttctttgaatatagaaatgaaccaac 590


Query: 791  cgaatattctgaaaaagataaattcttaactttaaattatcaaaataagaatgaatctga 850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  cgaatattctgaaaaagataaattcttaactttaaattatcaaaataagaatgaatctga 530


Query: 851  aaaagattgttcaatcaaggccaataaaaaacatttacaaaagatgatttcaatttttga 910
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  aaaagattgttcaatcaaggccaataaaaaacatttacaaaagatgatttcaatttttga 470


Query: 911  aaatgtaatcaatgaaagatcagtaaattgtggtatattcctttctcatctttataaatc 970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  aaatgtaatcaatgaaagatcagtaaattgtggtatattcctttctcatctttataaatc 410


Query: 971  aaatgttaatgaaaatcatttgaaaggtttagatcttttgatttggaatgaaattaaaaa 1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409  aaatgttaatgaaaatcatttgaaaggtttagatcttttgatttggaatgaaattaaaaa 350


Query: 1031 ttattttggcagtgaaagagttcaagtttttaccttcttaattaataatagaggtgataa 1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349  ttattttggcagtgaaagagttcaagtttttaccttcttaattaataatagaggtgataa 290


Query: 1091 tcaattaatcattgaaaaggtttcaaataaaactatgaatgaacctgataaaagtaaaaa 1150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289  tcaattaatcattgaaaaggtttcaaataaaactatgaatgaacctgataaaagtaaaaa 230


Query: 1151 taataaangtaacacctcacacaatattattttgtggttctaaantatggtaatttaaga 1210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229  taataaangtaacacctcacacaatattattttgtggttctaaantatggtaatttaaga 170


Query: 1211 tgtctcttaagtagaccacaagaatatactggtaatgattcttatcaacaagaggatatt 1270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169  tgtctcttaagtagaccacaagaatatactggtaatgattcttatcaacaagaggatatt 110


Query: 1271 ggtgtattctctgc 1284
            ||||||||||||||
Sbjct: 109  ggtgtattctctgc 96

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,814,525,841
Number of extensions: 124050272
Number of successful extensions: 12202292
Number of sequences better than 10.0: 343
Length of query: 1378
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1354
Effective length of database: 97,308,875,965
Effective search space: 131756218056610
Effective search space used: 131756218056610
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09760-1 (Contig-U09760-1Q) /CSM_Contig/Contig-U09760-1Q.Seq.d
         (1378 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_77(AC116956|pid:none) Dictyostelium discoideum chromoso...   391   e-110
AY326437_2(AY326437|pid:none) Nosema locustae group II large sub...    63   3e-08
AM270096_16(AM270096|pid:none) Aspergillus niger contig An04c036...    46   1e-05
AC117176_52(AC117176|pid:none) Dictyostelium discoideum chromoso...    44   6e-05
AL844508_302(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    43   0.031
CP000689_69(CP000689|pid:none) Acidiphilium cryptum JF-5 plasmid...    37   0.037
AM412317_908(AM412317|pid:none) Clostridium botulinum A str. ATC...    39   0.34
AL844507_189(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.75
AE014186_304(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.98
AL034559_18(AL034559|pid:none) Plasmodium falciparum MAL3P7, com...    37   1.3
AE014186_214(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.7
AE014187_637(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.7
X02893_1(X02893|pid:none) Candida glabrata mitochondrial gene fo...    37   2.2
S04682(S04682)ribosomal protein var1 - yeast (Candida glabrata) ...    37   2.2
CP000725_864(CP000725|pid:none) Streptococcus gordonii str. Chal...    36   2.8
AE014186_441(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.8
AL844506_276(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.8
AE001362_176(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.8
(Q60309) RecName: Full=Uncharacterized protein MJECS10;  &B64517...    36   2.8
CP001357_1368(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    36   3.7
AE014186_65(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    36   3.7
AL844509_254(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   3.7
AE015927_199(AE015927|pid:none) Clostridium tetani E88, complete...    36   3.7
AL844509_367(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.9
AB060735_1(AB060735|pid:none) Plasmodium yoelii mRNA for PyRhopH...    35   4.9
BA000026_848(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    35   4.9
CP000970_4673(CP000970|pid:none) Escherichia coli SMS-3-5, compl...    35   4.9
AE014186_323(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.9
DQ890022_416(DQ890022|pid:none) Paramecium bursaria Chlorella vi...    35   4.9
CP000395_806(CP000395|pid:none) Borrelia afzelii PKo, complete g...    35   4.9
AE014188_57(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    35   6.4
CP000685_2031(CP000685|pid:none) Flavobacterium johnsoniae UW101...    35   6.4
DQ491001_399(DQ491001|pid:none) Paramecium bursaria chlorella vi...    35   6.4
BA000033_355(BA000033|pid:none) Staphylococcus aureus subsp. aur...    35   8.3
CP000395_739(CP000395|pid:none) Borrelia afzelii PKo, complete g...    35   8.3
AE014187_32(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    35   8.3
AM999887_599(AM999887|pid:none) Wolbachia endosymbiont of Culex ...    35   8.3
CP000061_339(CP000061|pid:none) Aster yellows witches'-broom phy...    35   8.3

>AC116956_77(AC116956|pid:none) Dictyostelium discoideum chromosome 2
            map 1418423-1684967 strain AX4, complete sequence.
          Length = 551

 Score =  347 bits (889), Expect(3) = e-110
 Identities = 170/176 (96%), Positives = 172/176 (97%)
 Frame = +3

Query: 612  FKWIAFYNDCIHTGYSRLPKGVRIVLQFNILFINEERKENEPLITFKRMDDFFEYRNEPT 791
            FKWIAFYNDCIHT  + + KGVRIVLQFNILFINEERKENEPLITFKRMDDFFEYRNEPT
Sbjct: 320  FKWIAFYNDCIHT-VTPVTKGVRIVLQFNILFINEERKENEPLITFKRMDDFFEYRNEPT 378

Query: 792  EYSEKDKFLTLNYQNKNESEKDCSIKANKKHLQKMISIFENVINERSVNCGIFLSHLYKS 971
            EYSEKDKFLTLNYQNKNESEKDCSIKANKKHLQKMISIFENVINERSVNCGIFLSHLYKS
Sbjct: 379  EYSEKDKFLTLNYQNKNESEKDCSIKANKKHLQKMISIFENVINERSVNCGIFLSHLYKS 438

Query: 972  NVNENHLKGLDLLIWNEIKNYFGSERVQVFTFLINNRGDNQLIIEKVSNKTMNEPD 1139
            NVNENHLKGLDLLIWNEIKNYFGSERVQVFTFLINNRGDNQLIIEKVSNKTMNEPD
Sbjct: 439  NVNENHLKGLDLLIWNEIKNYFGSERVQVFTFLINNRGDNQLIIEKVSNKTMNEPD 494

 Score = 66.6 bits (161), Expect(3) = e-110
 Identities = 30/30 (100%), Positives = 30/30 (100%)
 Frame = +2

Query: 1196 YGNLRCLLSRPQEYTGNDSYQQEDIGVFSA 1285
            YGNLRCLLSRPQEYTGNDSYQQEDIGVFSA
Sbjct: 513  YGNLRCLLSRPQEYTGNDSYQQEDIGVFSA 542

 Score = 30.8 bits (68), Expect(3) = e-110
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 1141 KVKIIXVTPHTILFCGSK 1194
            K K   VTPHTILFCGSK
Sbjct: 495  KSKNNKVTPHTILFCGSK 512

 Score =  391 bits (1005), Expect = e-107
 Identities = 195/237 (82%), Positives = 207/237 (87%)
 Frame = +1

Query: 19  KASKDFKKVKTFKNENEVNYDFNIYIDDKECGTIFEPDLNLIQSFSKKSSFGNGVDTVYD 198
           KASKDFKKVKTFKNENEVNYDFNIYIDDKECGTIFEPDLNLIQSFSKKSSFGNGVDTVYD
Sbjct: 132 KASKDFKKVKTFKNENEVNYDFNIYIDDKECGTIFEPDLNLIQSFSKKSSFGNGVDTVYD 191

Query: 199 ENIRKGYHIEGNRVKVPFFQEKAENYKDYKVMNQFDFKHPLKENQFFYKKTNYDLELYKI 378
           ENIRKGYHIEGNRVKVPFFQEKAENYKDYKVMNQFDFKHPLKENQFFYKKTNYDLELYKI
Sbjct: 192 ENIRKGYHIEGNRVKVPFFQEKAENYKDYKVMNQFDFKHPLKENQFFYKKTNYDLELYKI 251

Query: 379 HIYNEGGHFQPHIDTIHSKNHIGTYIVPLGVDTYEGGEFIISENDTFDQTTINYKIXAND 558
           HIYNEGGHFQPHIDTIHSKNHIGTYIVPLGVDTYEGGEFIISENDTFDQTTINYKI AND
Sbjct: 252 HIYNEGGHFQPHIDTIHSKNHIGTYIVPLGVDTYEGGEFIISENDTFDQTTINYKIEAND 311

Query: 559 NKLQDSXXXXXXXXXXXXSNGLHSIMIVFIRVTPGYQRVLELYYNLIFYLLMKKEKK 729
           NKLQDS            ++ +H++      VT G + VL+  +N++F    +KE +
Sbjct: 312 NKLQDS---IDFKWIAFYNDCIHTV----TPVTKGVRIVLQ--FNILFINEERKENE 359

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,831,754,607
Number of extensions: 37019616
Number of successful extensions: 100091
Number of sequences better than 10.0: 38
Number of HSP's gapped: 99933
Number of HSP's successfully gapped: 44
Length of query: 459
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 327
Effective length of database: 618,001,159
Effective search space: 202086378993
Effective search space used: 202086378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.51  gvh: 0.36  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U09760-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0