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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09751-1
Contig ID Contig-U09751-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Contig-U09751-1Q.Seq.d
AACGAAAGACGATTTAGATATATATACACACATAAAAAAAAATAAAAAAA
ACATTAGAAAATGGGTAAAAAAGATAAAACTGAAATTAAAGTAGAAGAAG
AAAATAAAGAAAAAAAACAATATAAAAAAAAGAAAGAAAGAGAAGAATTG
GAAATACCAAAAGGTATTGATCCATGGAAACCATTAGAATTAAAGAGAGA
TGATGTTGGTAAACGTGTACTCTATGATGATTCATCATTTGCAACCTTAT
TCCCAAAATACAGAGAGAAATATTTACAAGAGATTTGGAAATTAGTTGAA
AATGTTTTACATGAACATGGTATCGAATGTAAATTAGATTTAATTGAAGG
TAGTATGACTGTCACAACAACTAAAAAATGTTGGGATCCTGTAGCTATCC
TAAAAGCAAGAGATTTAATTAAATTACTATCAAGATCTGTACCATTTGAA
CATGCACAAAAAGTATTAAATGATGATTATAATTGTGATATTATTAAAAT
TGGTGGTTTTGTTAGAAATAAAGAGAGATTTGTAAAGAGAAGACAACGTT
TAGTTGGTCCAGATGGTAGTACATTGAAAGCAATTGAACTTTTAACNNNN
NNNNN----------ATTNGAAAANGNTGNAACATTAAAGAATGNAAATT
GGGAAAGATATTTACCNCAATTTNAAAAGNCNAATCNAAATNAAAAGNAA
AAAGTTCAAAAAAAGAAGAAAGGCAGNGATGCAGCNCCATTTGCNCCNCC
NCAATTACCAAGAAAAGAAGATCTTGCTATGGAATCTGGTGAATATTTTG
CAAGTGAAGAAAAGAAACGTAGAAAGATACAAGCTGATAGAGAAGCTAAA
CATGCAGAATCTGATCAAAAGAGAAAGGATGAAAGACAAAAATCACAAAT
TGCACCTGCTGAAAAAGATAGATCAACCACTACCACCACTAATACTTCAA
ACATTCAAGATACACTCTCAAATATTAAAAATAATTTAAAAAATAATAAA
AGAAAGGAAGCTCCAACAAATAATGCAGATGATTTTGTTTTAAAGAAAAA
TAAGAAATAAATATTTATTTTTTAAAAAGTAATAAAATAAAATTATAAAA
AAAAA
Gap gap included
Contig length 1095
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3744534
End point 3743446
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 4
Link to clone list U09751
List of clone(s) 

est1=VFM852F,1,596
est2=VFM852Z,597,1035
est3=VSF538F,729,1087
est4=VSF538Z,729,1059
Translated Amino Acid sequence 
nerrfryiythkkk*kkh*KMGKKDKTEIKVEEENKEKKQYKKKKEREELEIPKGIDPWK
PLELKRDDVGKRVLYDDSSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDLIEGSMT
VTTTKKCWDPVAILKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNKERFVKR
RQRLVGPDGSTLKAIELLTXX---

---XEXXXTLKNXNWERYLPQFXKXNXNXKXKVQKKKKGXDAAPFAPPQLPRKEDLAMES
GEYFASEEKKRRKIQADREAKHAESDQKRKDERQKSQIAPAEKDRSTTTTTNTSNIQDTL
SNIKNNLKNNKRKEAPTNNADDFVLKKNKK*ifif*kvik*nykkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nerrfryiythkkk*kkh*KMGKKDKTEIKVEEENKEKKQYKKKKEREELEIPKGIDPWK
PLELKRDDVGKRVLYDDSSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDLIEGSMT
VTTTKKCWDPVAILKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNKERFVKR
RQRLVGPDGSTLKAIELLTXX---

---ixkxxnikexklgkiftxixkxxskxkxksskkeerqxcsxicxxxitkkrrscygi
w*ifck*rket*kdts**rs*tcri*skekg*ktkitnctc*kr*inhyhh*yfkhsryt
lky*k*fkk**kkgssnk*cr*fcfkek*einiyflksnkikl*kk

Frame B:
tkddldiythikknkknirkwvkkiklklk*kkkikkknnikkrkkeknwkyqkvlihgn
h*n*remmlvnvysmmihhlqpysqnterniykrfgn*lkmfymnmvsnvn*i*lkvv*l
sqqlknvgil*ls*kqei*lnyyqdlyhlnmhkky*mmiiivillklvvlleikrdl*re
dnv*lvqmvvh*kqlnf*xxx---

---XEXXXTLKNXNWERYLPQFXKXNXNXKXKVQKKKKGXDAAPFAPPQLPRKEDLAMES
GEYFASEEKKRRKIQADREAKHAESDQKRKDERQKSQIAPAEKDRSTTTTTNTSNIQDTL
SNIKNNLKNNKRKEAPTNNADDFVLKKNKK*ifif*kvik*nykkk

Frame C:
rkti*iyiht*kkikktleng*kr*n*n*srrrk*rkkti*kkerkrrigntkry*smet
iriker*cw*tctl**fiicnlipkiqreiftrdleis*kcft*twyrm*irfn*r*ydc
hnn*kmlgscsypkskrfn*itikicti*tctksik**l*l*yy*nwwfc*k*reickek
ttfswsrw*yiesn*tfnxxx---

---xkxxxh*rmxigkdiyxnxkxxixxkxkkfkkrrkaxmqxhlxxxnyqekkillwnl
vnilqvkkrnveryklieklnmqnlikrermkdknhklhllkkidqplpplilqtfkihs
qilkii*kiikerklqqimqmilf*rkirnkylffkk**nkiikk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09751-1 (Contig-U09751-1Q)
/CSM_Contig/Contig-U09751-1Q.Seq.d
         (1105 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Conti...   922  0.0
Contig-U08873-1 (Contig-U08873-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U01169-1 (Contig-U01169-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12229-1 (Contig-U12229-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U11807-1 (Contig-U11807-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U11307-1 (Contig-U11307-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U12289-1 (Contig-U12289-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U10796-1 (Contig-U10796-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U08927-1 (Contig-U08927-1Q) /CSM_Contig/Conti...    36  0.078

>Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Contig-U09751-1Q.Seq.d
          Length = 1105

 Score =  922 bits (465), Expect = 0.0
 Identities = 465/465 (100%)
 Strand = Plus / Plus

                                                                       
Query: 132 gaaagaaagagaagaattggaaataccaaaaggtattgatccatggaaaccattagaatt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gaaagaaagagaagaattggaaataccaaaaggtattgatccatggaaaccattagaatt 191

                                                                       
Query: 192 aaagagagatgatgttggtaaacgtgtactctatgatgattcatcatttgcaaccttatt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaagagagatgatgttggtaaacgtgtactctatgatgattcatcatttgcaaccttatt 251

                                                                       
Query: 252 cccaaaatacagagagaaatatttacaagagatttggaaattagttgaaaatgttttaca 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cccaaaatacagagagaaatatttacaagagatttggaaattagttgaaaatgttttaca 311

                                                                       
Query: 312 tgaacatggtatcgaatgtaaattagatttaattgaaggtagtatgactgtcacaacaac 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgaacatggtatcgaatgtaaattagatttaattgaaggtagtatgactgtcacaacaac 371

                                                                       
Query: 372 taaaaaatgttgggatcctgtagctatcctaaaagcaagagatttaattaaattactatc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taaaaaatgttgggatcctgtagctatcctaaaagcaagagatttaattaaattactatc 431

                                                                       
Query: 432 aagatctgtaccatttgaacatgcacaaaaagtattaaatgatgattataattgtgatat 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagatctgtaccatttgaacatgcacaaaaagtattaaatgatgattataattgtgatat 491

                                                                       
Query: 492 tattaaaattggtggttttgttagaaataaagagagatttgtaaagagaagacaacgttt 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tattaaaattggtggttttgttagaaataaagagagatttgtaaagagaagacaacgttt 551

                                                        
Query: 552 agttggtccagatggtagtacattgaaagcaattgaacttttaac 596
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agttggtccagatggtagtacattgaaagcaattgaacttttaac 596


 Score =  476 bits (240), Expect = e-134
 Identities = 255/255 (100%)
 Strand = Plus / Plus

                                                                       
Query: 715 gaagaaaggcagngatgcagcnccatttgcnccnccncaattaccaagaaaagaagatct 774
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaagaaaggcagngatgcagcnccatttgcnccnccncaattaccaagaaaagaagatct 774

                                                                       
Query: 775 tgctatggaatctggtgaatattttgcaagtgaagaaaagaaacgtagaaagatacaagc 834
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgctatggaatctggtgaatattttgcaagtgaagaaaagaaacgtagaaagatacaagc 834

                                                                       
Query: 835 tgatagagaagctaaacatgcagaatctgatcaaaagagaaaggatgaaagacaaaaatc 894
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tgatagagaagctaaacatgcagaatctgatcaaaagagaaaggatgaaagacaaaaatc 894

                                                                       
Query: 895 acaaattgcacctgctgaaaaagatagatcaaccactaccaccactaatacttcaaacat 954
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 acaaattgcacctgctgaaaaagatagatcaaccactaccaccactaatacttcaaacat 954

                          
Query: 955 tcaagatacactctc 969
           |||||||||||||||
Sbjct: 955 tcaagatacactctc 969


 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                     
Query: 616 attngaaaangntgnaacattaaagaatgnaaattgggaaagatatttaccncaattt 673
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 attngaaaangntgnaacattaaagaatgnaaattgggaaagatatttaccncaattt 673


 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 1  aacgaaagacgatttagatatatatacacacat 33
          |||||||||||||||||||||||||||||||||
Sbjct: 1  aacgaaagacgatttagatatatatacacacat 33


 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                           
Query: 1002 gaaaggaagctccaacaaataatgcagatga 1032
            |||||||||||||||||||||||||||||||
Sbjct: 1002 gaaaggaagctccaacaaataatgcagatga 1032


>Contig-U08873-1 (Contig-U08873-1Q) /CSM_Contig/Contig-U08873-1Q.Seq.d
          Length = 1379

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 471  tgatgattataattgtgatattatt 495
            ||||| |||||||||||||||||||
Sbjct: 1087 tgatggttataattgtgatattatt 1111


>Contig-U01169-1 (Contig-U01169-1Q) /CSM_Contig/Contig-U01169-1Q.Seq.d
          Length = 422

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 tttagttggtccagatggta 568
           ||||||||||||||||||||
Sbjct: 221 tttagttggtccagatggta 240


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,314
Number of Sequences: 6905
Number of extensions: 11314
Number of successful extensions: 1460
Number of sequences better than 10.0: 174
length of query: 1105
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1089
effective length of database: 5,564,391
effective search space: 6059621799
effective search space used: 6059621799
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.17
Homology vs DNA 
Query= Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Contig-U09751-1Q.Seq.d
         (1105 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ416488) Dictyostelium discoideum cDNA clone:ddv26h14, 5' ...   858   0.0    2
(AU265384) Dictyostelium discoideum vegetative cDNA clone:VS...   432   e-129  2
(AU265385) Dictyostelium discoideum vegetative cDNA clone:VS...   432   e-129  2
(BJ435262) Dictyostelium discoideum cDNA clone:ddv26h14, 3' ...   307   2e-99  3
(AR545386) Sequence 517 from patent US 6747137.                    48   7e-14  4
(AX488958) Sequence 6258 from Patent WO02053728.                   48   5e-13  4
(CB607290) AMGNNUC:NRDG1-00138-H5-A nrdg1 (10855) Rattus nor...    48   7e-10  3
(CF114959) Shultzomica08210 Rat lung airway and parenchyma c...    48   8e-10  3
(DY310302) AGENCOURT_66814097 NIH_MGC_365 Rattus norvegicus ...    48   1e-09  3
(CO394611) AGENCOURT_26758264 NIH_MGC_255 Rattus norvegicus ...    48   1e-09  3
(CK476477) AGENCOURT_17582819 NIH_MGC_232 Rattus norvegicus ...    48   1e-09  3
(EX492998) AGENCOURT_118864445 NIH_MGC_246 Rattus norvegicus...    48   2e-09  3
(EV774887) AGENCOURT_112375020 NIH_MGC_429 Rattus norvegicus...    48   2e-09  3
(EV775679) AGENCOURT_112374924 NIH_MGC_429 Rattus norvegicus...    48   2e-09  3
(BC128768) Rattus norvegicus HIV-1 Rev binding protein 2, mR...    48   5e-09  3
(DN267587) LIB30320_016_F04_SP6_1 LIB30320 Canis lupus famil...    62   2e-08  2
(BU749602) CH3#027_H06T7 Canine heart normalized cDNA Librar...    62   2e-08  2
(EC361907) IMMUNEF089650P18 POSSUM_01-C-POSSUM-IMMUNE-2KB Tr...    62   7e-08  3
(FE396910) CBTP4078.rev CBTP_Daphnia_pulex_Chosen_One_Librar...    48   1e-07  3
(BM363938) BS320035000E4 Subtracted Lewin Cattle Spleen Bos ...    66   2e-07  2
(FE419563) CBTW3959.fwd CBTW_Daphnia_pulex_Chosen_One_Librar...    48   2e-07  3
(AV603633) Bos taurus cDNA clone:E1KI017D04, 5' end, express...    66   2e-07  2
(DY125054) 000813BPSA001353HT BPSA Bos taurus cDNA 5', mRNA ...    66   2e-07  2
(EE934256) H07420A FLM Bos taurus cDNA clone H0742 5', mRNA ...    66   2e-07  2
(FE367139) CBNO4802.fwd CBNO_Daphnia_pulex_Chosen_One_Librar...    48   2e-07  3
(FE381453) CBNS582.fwd CBNS_Daphnia_pulex_Chosen_One_Library...    48   2e-07  3
(EE952751) L96890A FNM Bos taurus cDNA clone L9689 5', mRNA ...    66   2e-07  2
(EC349181) LIVERF091695H19 POSSUM_01-POSSUM-LIVER-2KB Tricho...    62   2e-07  3
(EV618217) LB011147.CR_A06 GC_BGC-11 Bos taurus cDNA clone I...    66   3e-07  2
(CO905686) SnESTbaa45a11.y2 Sarcocystis neurona merozoite UK...    66   3e-07  2
(BP440812) Sus scrofa mRNA, clone:LNG010056H11, 5' end, expr...    50   3e-07  2
(AJ660043) Sus scrofa EST, clone C0005218_B15.                     50   3e-07  2
(EV681771) LB03517.CR_I10 GC_BGC-35 Bos taurus cDNA clone IM...    66   3e-07  2
(EV660296) LB03353.CR_F06 GC_BGC-33 Bos taurus cDNA clone IM...    66   3e-07  2
(DV802659) LB01322.CR_F01 GC_BGC-13 Bos taurus cDNA clone IM...    66   3e-07  2
(EC354726) LIVERF089614L12 POSSUM_01-POSSUM-LIVER-2KB Tricho...    62   3e-07  3
(DN527167) 1271994 MARC 7BOV Bos taurus cDNA 5', mRNA sequence.    66   3e-07  2
(AJ955365) Sus scrofa EST, clone C0007738d06, 5' direction.        50   3e-07  2
(EE360856) LB02976.CR_K10 GC_BGC-29 Bos taurus cDNA clone IM...    66   3e-07  2
(EH159618) LB01373.CR_B17 GC_BGC-13 Bos taurus cDNA clone IM...    66   3e-07  2
(EH373362) LB011115.CR_D16 GC_BGC-11 Bos taurus cDNA clone I...    66   3e-07  2
(EV664502) LB03414.CR_E07 GC_BGC-34 Bos taurus cDNA clone IM...    66   3e-07  2
(DB797606) Sus scrofa mRNA, clone:DCI010091A06, 5' end, expr...    50   3e-07  2
(BP436485) Sus scrofa mRNA, clone:LNG010074D07, 5' end, expr...    50   3e-07  2
(AM031034) Bos sp. 5' EST, clone C0007405m23.                      66   3e-07  2
(DY606229) IMMUNEF045811B7 POSSUM_01-C-POSSUM-IMMUNE-2KB Tri...    62   3e-07  3
(EV733258) LB03414.C21_E07 GC_BGC-34 Bos taurus cDNA clone I...    66   3e-07  2
(DV831929) LB01921.CR_D06 GC_BGC-19 Bos taurus cDNA clone IM...    66   3e-07  2
(EV612834) LB011114.CR.1_E23 GC_BGC-11 Bos taurus cDNA clone...    66   3e-07  2
(EH178209) LB01746.CR_J10 GC_BGC-17 Bos taurus cDNA clone IM...    66   3e-07  2
(EH375227) LB011125.CR_C23 GC_BGC-11 Bos taurus cDNA clone I...    66   3e-07  2
(DV819699) LB01729.CR_O05 GC_BGC-17 Bos taurus cDNA clone IM...    66   3e-07  2
(DY611397) IMMUNEF045817N8 POSSUM_01-C-POSSUM-IMMUNE-2KB Tri...    62   3e-07  3
(CJ026311) Sus scrofa mRNA, clone:TCH01C030052, 5' end, expr...    50   3e-07  2
(BP437538) Sus scrofa mRNA, clone:LNG010036E08, 5' end, expr...    50   3e-07  2
(EE367326) LB02996.CR_A20 GC_BGC-29 Bos taurus cDNA clone IM...    66   3e-07  2
(DT721683) LB0131.CR_M08 GC_BGC-13 Bos taurus cDNA clone IMA...    66   3e-07  2
(BP434580) Sus scrofa mRNA, clone:LNG010043B08, 5' end, expr...    50   4e-07  2
(AK231892) Sus scrofa mRNA, clone:LNG010043B08, expressed in...    50   4e-07  2
(AK238147) Sus scrofa mRNA, clone:TCH010052C03, expressed in...    50   4e-07  2
(AM053424) Epidinium ecaudatum EST, clone Eec05_F08.               68   8e-07  1
(CS395635) Sequence 4910 from Patent WO2006025879.                 48   8e-07  2
(CS391993) Sequence 1268 from Patent WO2006025879.                 48   8e-07  2
(CS215591) Sequence 4910 from Patent WO2005111246.                 48   8e-07  2
(CS211949) Sequence 1268 from Patent WO2005111246.                 48   8e-07  2
(FE394594) CBTP2007.fwd CBTP_Daphnia_pulex_Chosen_One_Librar...    44   9e-07  3
(FE394593) CBTP2007.rev CBTP_Daphnia_pulex_Chosen_One_Librar...    44   9e-07  3
(BC107550) Bos taurus KRR1, small subunit (SSU) processome c...    66   1e-06  2
(EV470150) PM_BWt0015C04f PM_BWtestis Peromyscus maniculatus...    48   1e-06  2
(FE357750) CBNN16951.fwd CBNN_Daphnia_pulex_Chosen_One_Libra...    44   2e-06  3
(DC443612) Gryllus bimaculatus mRNA, clone:GB00364-55_E01, 5...    38   2e-06  4
(FE395383) CBTP2681.fwd CBTP_Daphnia_pulex_Chosen_One_Librar...    48   2e-06  3
(FE421612) CBTX2716.fwd CBTX_Daphnia_pulex_Chosen_One_Librar...    44   3e-06  3
(AC172058) Bos taurus clone CH240-310I23, WORKING DRAFT SEQU...    66   3e-06  1
(EE934257) H07421A FLM Bos taurus cDNA clone H0742 3', mRNA ...    66   3e-06  1
(DY119727) 000507BTNA006426HT BTNA Bos taurus cDNA 5', mRNA ...    66   3e-06  1
(DY079141) 000731BTNA008621HT BTNA Bos taurus cDNA 5', mRNA ...    66   3e-06  1
(DN524419) 1268058 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    66   3e-06  1
(CR849350) Normalized and Subtracted bovine endometrium tiss...    66   3e-06  1
(AM032076) Bos sp. 3' EST, clone C0007405m23.                      66   3e-06  1
(BH165289) ENTRR77TR Entamoeba histolytica Sheared DNA Entam...    50   3e-06  2
(BX279925) RZPD Homo sapiens cDNA clone IMAGp998N2411471 = I...    58   1e-05  2
(EC299153) OVARYF089828L21 POSSUM_01-POSSUM-C-OVARY-2KB Tric...    62   1e-05  2
(EC336977) KIDNEYF089472A21 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    62   1e-05  2
(DY593921) GUTF054259A24 POSSUM_01-POSSUM-GUT-2KB Trichosuru...    62   1e-05  2
(EC326859) GUTF089462L2 POSSUM_01-POSSUM-GUT-2KB Trichosurus...    62   1e-05  2
(EC292996) BRAINF089687L17 POSSUM_01-POSSUM-C-BRAIN-2KB Tric...    62   1e-05  2
(EG609577) KIDNEYF101159H7 POSSUM_01-POSSUM-KIDNEY-2KB Trich...    62   2e-05  2
(EC331179) GUTF091685N21 POSSUM_01-POSSUM-GUT-2KB Trichosuru...    62   2e-05  2
(DY608709) IMMUNEF045820H24 POSSUM_01-C-POSSUM-IMMUNE-2KB Tr...    62   2e-05  2
(EC350226) LIVERF089515N15 POSSUM_01-POSSUM-LIVER-2KB Tricho...    62   2e-05  2
(EC332899) GUTF089630N2 POSSUM_01-POSSUM-GUT-2KB Trichosurus...    62   2e-05  2
(EC303322) OVARYF089558N19 POSSUM_01-POSSUM-C-OVARY-2KB Tric...    62   2e-05  2
(EC353460) LIVERF089500N15 POSSUM_01-POSSUM-LIVER-2KB Tricho...    62   2e-05  2
(EG609923) KIDNEYF101160D1 POSSUM_01-POSSUM-KIDNEY-2KB Trich...    62   2e-05  2
(BU749601) CH3#027_H06T3 Canine heart normalized cDNA Librar...    62   2e-05  2
(BI761053) 603048595F1 NIH_MGC_116 Homo sapiens cDNA clone I...    58   2e-05  2
(DJ129642) Method for identification of useful proteins deri...    44   2e-05  3
(EC342502) KIDNEYF089503O21 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    62   2e-05  2
(EC326949) GUTF089546G24 POSSUM_01-POSSUM-GUT-2KB Trichosuru...    62   2e-05  2

>(BJ416488) Dictyostelium discoideum cDNA clone:ddv26h14, 5' end,
           single read.
          Length = 596

 Score =  858 bits (433), Expect(2) = 0.0
 Identities = 433/433 (100%)
 Strand = Plus / Plus


Query: 164 gtattgatccatggaaaccattagaattaaagagagatgatgttggtaaacgtgtactct 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gtattgatccatggaaaccattagaattaaagagagatgatgttggtaaacgtgtactct 223


Query: 224 atgatgattcatcatttgcaaccttattcccaaaatacagagagaaatatttacaagaga 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 atgatgattcatcatttgcaaccttattcccaaaatacagagagaaatatttacaagaga 283


Query: 284 tttggaaattagttgaaaatgttttacatgaacatggtatcgaatgtaaattagatttaa 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tttggaaattagttgaaaatgttttacatgaacatggtatcgaatgtaaattagatttaa 343


Query: 344 ttgaaggtagtatgactgtcacaacaactaaaaaatgttgggatcctgtagctatcctaa 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttgaaggtagtatgactgtcacaacaactaaaaaatgttgggatcctgtagctatcctaa 403


Query: 404 aagcaagagatttaattaaattactatcaagatctgtaccatttgaacatgcacaaaaag 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aagcaagagatttaattaaattactatcaagatctgtaccatttgaacatgcacaaaaag 463


Query: 464 tattaaatgatgattataattgtgatattattaaaattggtggttttgttagaaataaag 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tattaaatgatgattataattgtgatattattaaaattggtggttttgttagaaataaag 523


Query: 524 agagatttgtaaagagaagacaacgtttagttggtccagatggtagtacattgaaagcaa 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agagatttgtaaagagaagacaacgtttagttggtccagatggtagtacattgaaagcaa 583


Query: 584 ttgaacttttaac 596
           |||||||||||||
Sbjct: 584 ttgaacttttaac 596

 Score = 65.9 bits (33), Expect(2) = 0.0
 Identities = 33/33 (100%)
 Strand = Plus / Plus


Query: 1  aacgaaagacgatttagatatatatacacacat 33
          |||||||||||||||||||||||||||||||||
Sbjct: 1  aacgaaagacgatttagatatatatacacacat 33

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 974,459,977
Number of extensions: 61478727
Number of successful extensions: 5319198
Number of sequences better than 10.0: 420
Length of query: 1105
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1081
Effective length of database: 97,308,875,965
Effective search space: 105190894918165
Effective search space used: 105190894918165
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Contig-U09751-1Q.Seq.d
         (1105 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001328_348(CP001328|pid:none) Micromonas sp. RCC299 chromosome...   189   2e-46
CP000587_454(CP000587|pid:none) Ostreococcus lucimarinus CCE9901...   187   4e-46
(Q8BGA5) RecName: Full=KRR1 small subunit processome component h...   186   1e-45
BC094236_1(BC094236|pid:none) Mus musculus KRR1, small subunit (...   186   1e-45
AK032472_1(AK032472|pid:none) Mus musculus adult male olfactory ...   186   1e-45
(Q13601) RecName: Full=KRR1 small subunit processome component h...   186   2e-45
G02629(G02629) Rev interacting protein Rip-1 - human  &U55766_1(...   186   2e-45
BC128768_1(BC128768|pid:none) Rattus norvegicus HIV-1 Rev bindin...   186   2e-45
BC033887_1(BC033887|pid:none) Homo sapiens KRR1, small subunit (...   186   2e-45
BC026107_1(BC026107|pid:none) Homo sapiens KRR1, small subunit (...   186   2e-45
(Q3B7L9) RecName: Full=KRR1 small subunit processome component h...   186   2e-45
BC005225_1(BC005225|pid:none) Homo sapiens KRR1, small subunit (...   186   2e-45
(P25586) RecName: Full=Ribosomal RNA assembly protein KRR1; AltN...   185   2e-45
BC154860_1(BC154860|pid:none) Xenopus tropicalis hypothetical pr...   185   2e-45
CR761759_1(CR761759|pid:none) Xenopus tropicalis finished cDNA, ...   185   2e-45
BC121622_1(BC121622|pid:none) Xenopus tropicalis hypothetical pr...   185   2e-45
BC041273_1(BC041273|pid:none) Xenopus laevis similar to HIV-1 re...   185   3e-45
AK313687_1(AK313687|pid:none) Homo sapiens cDNA, FLJ94276, highl...   184   4e-45
CU928170_14(CU928170|pid:none) Kluyveromyces thermotolerans stra...   184   6e-45
EF010919_1(EF010919|pid:none) Homo sapiens HRB2 variant B mRNA, ...   183   8e-45
BC016778_1(BC016778|pid:none) Homo sapiens KRR1, small subunit (...   183   1e-44
BC117593_1(BC117593|pid:none) Danio rerio zgc:136398, mRNA (cDNA...   182   2e-44
AP007159_446(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...   181   3e-44
AM270004_21(AM270004|pid:none) Aspergillus niger contig An02c009...   181   3e-44
CR940348_327(CR940348|pid:none) Theileria annulata strain Ankara...   181   5e-44
CR382123_18(CR382123|pid:none) Kluyveromyces lactis strain NRRL ...   181   5e-44
Z96931_1(Z96931|pid:none) Drosophlila melanogaster DNA for dribb...   179   1e-43
CR380948_7(CR380948|pid:none) Candida glabrata strain CBS138 chr...   179   2e-43
AM920430_27(AM920430|pid:none) Penicillium chrysogenum Wisconsin...   178   3e-43
FM992688_1053(FM992688|pid:none) Candida dubliniensis CD36 chrom...   177   4e-43
FN392319_647(FN392319|pid:none) Pichia pastoris GS115 chromosome...   177   6e-43
CR382132_1241(CR382132|pid:none) Yarrowia lipolytica strain CLIB...   177   8e-43
CP000496_286(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   176   1e-42
AY087002_1(AY087002|pid:none) Arabidopsis thaliana clone 3036 mR...   176   1e-42
AK297602_1(AK297602|pid:none) Homo sapiens cDNA FLJ57399 complet...   176   1e-42
AE016819_980(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...   173   8e-42
AK070158_1(AK070158|pid:none) Oryza sativa Japonica Group cDNA c...   172   2e-41
BT078205_1(BT078205|pid:none) Lepeophtheirus salmonis clone lsal...   171   3e-41
CU633897_289(CU633897|pid:none) Podospora anserina genomic DNA c...   168   3e-40
AF016430_3(AF016430|pid:none) Caenorhabditis elegans cosmid C05C...   167   5e-40
AM910986_120(AM910986|pid:none) Plasmodium knowlesi strain H chr...   164   5e-39
AF541964_1(AF541964|pid:none) Giardia intestinalis KRR1 gene, co...   142   2e-32
FN313716_1(FN313716|pid:none) Schistosoma japonicum isolate Anhu...   141   4e-32
AX885196_1(AX885196|pid:none) Sequence 1059 from Patent EP1033401.    136   1e-30
BC092872_1(BC092872|pid:none) Danio rerio hypothetical protein L...   123   1e-26
AJ010592_37(AJ010592|pid:none) Guillardia theta DNA for complete...   103   8e-21
AP008207_2323(AP008207|pid:none) Oryza sativa (japonica cultivar...    60   1e-18
BX950229_605(BX950229|pid:none) Methanococcus maripaludis strain...    57   9e-07
(Q57885) RecName: Full=KH domain-containing protein MJ0443;  &C6...    57   1e-06
CP000743_585(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    55   3e-06
FN357306_17(FN357306|pid:none) Schistosoma mansoni genome sequen...    51   8e-05
BA000001_1613(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ...    48   5e-04
GM016639_259(GM016639|pid:none) Sequence 1469 from Patent EP1923...    45   0.006
AY596297_2198(AY596297|pid:none) Haloarcula marismortui ATCC 430...    44   0.010
CP000678_954(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    43   0.022
CP000512_2185(CP000512|pid:none) Acidovorax citrulli AAC00-1, co...    43   0.022
AE004437_1708(AE004437|pid:none) Halobacterium sp. NRC-1, comple...    42   0.029
CP000477_167(CP000477|pid:none) Methanosaeta thermophila PT, com...    42   0.038
DQ158857_15(DQ158857|pid:none) Bigelowiella natans nucleomorph c...    41   0.065
AM114193_2909(AM114193|pid:none) Uncultured methanogenic archaeo...    40   0.11
CP000852_958(CP000852|pid:none) Caldivirga maquilingensis IC-167...    40   0.19
AM180088_2117(AM180088|pid:none) Haloquadratum walsbyi DSM 16790...    39   0.42
CP000539_2658(CP000539|pid:none) Acidovorax sp. JS42, complete g...    38   0.55
BA000023_565(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ...    38   0.72
FM201282_69(FM201282|pid:none) Pseudomonas phage LMA2 complete g...    37   0.94
CP001186_4799(CP001186|pid:none) Bacillus cereus G9842, complete...    37   1.6
BX908808_21(BX908808|pid:none) Neurospora crassa DNA linkage gro...    37   1.6
AE006641_2174(AE006641|pid:none) Sulfolobus solfataricus P2, com...    37   1.6
AY752886_1(AY752886|pid:none) Taenia solium oncosphere protein T...    36   2.1
AY752884_1(AY752884|pid:none) Taenia solium oncosphere protein T...    36   2.1
AY752885_1(AY752885|pid:none) Taenia solium oncosphere protein T...    36   2.1
AY752887_1(AY752887|pid:none) Taenia solium oncosphere protein T...    36   2.1
AC006642_4(AC006642|pid:none) Caenorhabditis elegans cosmid F49H...    36   2.7
CP000504_764(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,...    36   2.7
CP001404_2481(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...    36   2.7
CP001399_202(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ...    36   2.7
CP000660_1785(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135...    35   4.7
AM270211_14(AM270211|pid:none) Aspergillus niger contig An09c022...    35   4.7
(O43101) RecName: Full=Centromere/microtubule-binding protein CB...    35   6.1
Z93388_4(Z93388|pid:none) Caenorhabditis elegans Cosmid T10C6, c...    34   7.9
BT068766_1(BT068766|pid:none) Zea mays full-length cDNA clone ZM...    34   7.9
(Q0IIX4) RecName: Full=Small acidic protein;  &BC121515_1(BC1215...    34   8.0
AY172336_1(AY172336|pid:none) Pennisetum mosaic virus polyprotei...    34   8.0
AE009441_2451(AE009441|pid:none) Pyrobaculum aerophilum str. IM2...    34   8.0
AE014188_10(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    34   8.0

>CP001328_348(CP001328|pid:none) Micromonas sp. RCC299 chromosome 7,
           complete sequence.
          Length = 398

 Score =  189 bits (479), Expect = 2e-46
 Identities = 95/145 (65%), Positives = 114/145 (78%)
 Frame = +1

Query: 163 GIDPWKPLELKRDDVGKRVLYDDSSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDL 342
           GID WK     +DD    +L ++SSFATLFPKYREKYL+E+W  V   L E GI C+L+L
Sbjct: 39  GIDHWKVDPFTKDDNPDGLL-EESSFATLFPKYREKYLREVWPSVTRALKECGIACELNL 97

Query: 343 IEGSMTVTTTKKCWDPVAILKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNK 522
           +EGSMTV TT+K +DP  I+K+RDLIKLLSRSVP   A K+L DD  CD+IKIGG VRNK
Sbjct: 98  VEGSMTVRTTRKTFDPYIIIKSRDLIKLLSRSVPAPQALKILQDDVQCDVIKIGGMVRNK 157

Query: 523 ERFVKRRQRLVGPDGSTLKAIELLT 597
           ER+VKRRQRL+GP+GSTLKAIE+LT
Sbjct: 158 ERYVKRRQRLIGPNGSTLKAIEMLT 182

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 32/93 (34%), Positives = 47/93 (50%)
 Frame = +2

Query: 635 LKNXNWERYLPQFXKXNXNXXXXXXXXXXGXDAAPFAPPQLPRKEDLAMESGEYFASEEK 814
           L + +W+R+LP+F K N              D   F P   P K D+ +ESGEYF S+E
Sbjct: 237 LADQSWDRFLPKFKKKNVQRKKPAKIGKGKKDQV-FPPAPQPSKIDMQIESGEYFLSQEA 295

Query: 815 KRRKIQADREAKHAESDQKRKDERQKSQIAPAE 913
           KRR+   ++  K  E+    +  R+ + IAP E
Sbjct: 296 KRRRAAQEKLDKQKEALSASQKRRRDAFIAPKE 328

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,108,745,612
Number of extensions: 19444425
Number of successful extensions: 59774
Number of sequences better than 10.0: 85
Number of HSP's gapped: 58841
Number of HSP's successfully gapped: 126
Length of query: 368
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 238
Effective length of database: 624,409,729
Effective search space: 148609515502
Effective search space used: 148609515502
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.21  gvh: 0.02  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.35  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U09751-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0