Contig-U09749-1
Contig ID Contig-U09749-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09749-1 (Contig-U09749-1Q) /CSM_Contig/Contig-U09749-1Q.Seq.d
AAAAGTCTTCATCATGTATATCCTCTATAAAAAATAAAAATAAAAATAAA
AATAAAACTCAAACATAAGAAATTAAAAATATCCCCCCCATCGTCTACTT
AAATATTTAAAAAAATCCAACACATTATTTTTTTTTTTATTTTTTATTTT
ATTTTTTTTTTTATAAAATTATTTNAAAAAATTNTTA----------NNN
NNNNNNNATTCACCACAAATTTCACATGTCCTAACATGTAGAGAATATAC
GAAATCAGTCGAACAATTAAATTCAACAATAGAGCCTTTATTATCAAGTT
TTAGATTAAACAATCTTTTATTCTTATTTATTTTATTATTCATTCCATCA
ATTATTGTCACAGCGATTAATGCAAGTTTAGGAAAATTATTTTTGCCTTC
TGTAATTGTTGGTGGTATTTCATTTCTAATTATAATATTTGCAATATTTA
GAAAATCATTTTTACATAGAAAACTTGTTCAAGGCATATCTAGAGATATT
AGAGATTTTAATAAAAGGTTTCAAAGTCGTCAAGTTTTATTAGAATATTT
AGTAACTACAAAATTTAATCAAAAGAATGGTAGAGAATATAGTATTAGTT
TACATTTAATTTATCCAATAATAACATTAACTCCGGGAATGTTTTCAATA
AATCAACAACAAGAACAACAACAACAACTACAGCAAAAACAACAAAATAA
ATCTCAAGAATTAGAATACCCACCCCCATTATCGATTCAACAACAACAAC
AACAACAACAACAACAACAACAAACAGAACAAAATTACTATGATGAAGAG
GATAACTCAAATGAAAACTCTTCACTTTTACGATTTTAAATAATAAATAA
TCAAAACAATTTAAATAAAA

Gap gap included
Contig length 860
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3783983
End point 3784816
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U09749
List of clone(s)

est1=VFM788F,0,165
est2=VFM840F,1,187
est3=VFM840Z,188,851
Translated Amino Acid sequence
kslhhvypl*kikikikiklkhkklkisppsst*IFKKIQHIIFFFIFYFIFFFIKLFXK
IX---

---XXXXSPQISHVLTCREYTKSVEQLNSTIEPLLSSFRLNNLLFLFILLFIPSIIVTAI
NASLGKLFLPSVIVGGISFLIIIFAIFRKSFLHRKLVQGISRDIRDFNKRFQSRQVLLEY
LVTTKFNQKNGREYSISLHLIYPIITLTPGMFSINQQQEQQQQLQQKQQNKSQELEYPPP
LSIQQQQQQQQQQQQTEQNYYDEEDNSNENSSLLRF*iinnqnnlnk


Translated Amino Acid sequence (All Frames)
Frame A:
kslhhvypl*kikikikiklkhkklkisppsst*IFKKIQHIIFFFIFYFIFFFIKLFXK
IX---

---XXXXSPQISHVLTCREYTKSVEQLNSTIEPLLSSFRLNNLLFLFILLFIPSIIVTAI
NASLGKLFLPSVIVGGISFLIIIFAIFRKSFLHRKLVQGISRDIRDFNKRFQSRQVLLEY
LVTTKFNQKNGREYSISLHLIYPIITLTPGMFSINQQQEQQQQLQQKQQNKSQELEYPPP
LSIQQQQQQQQQQQQTEQNYYDEEDNSNENSSLLRF*iinnqnnlnk

Frame B:
kvfimyilykk*k*k*k*nsnirn*kypphrllkylkksntlffflffilfffl*nyxkk
xl---

---xxxihhkfhms*hvenirnqsnn*iqq*slyyqvld*tifysylfyysfhqllsqrl
mqv*enyfcll*llvvfhf*l*ylqylenhfyienlfkayleileilikgfkvvkfy*ni
**lqnlikrmvenivlvyi*fiq**h*lrecfq*innknnnnnysknnkinlkn*nthph
yrfnnnnnnnnnnnkqnkitmmkritqmktlhfydfk**iikti*ik

Frame C:
kssscissiknknknknktqt*eiknippivylni*knpthyfffyflfyfffykiixkn
x---

---xxxfttnftcpnm*riyeisrtikfnnrafiikf*ikqsfiliyfiihsinychsd*
ckfrkiifafcncwwyfisnynicni*kiift*ktcsrhi*ry*rf**kvsksssfirif
snyki*skew*ri*y*ftfnlsnnninsgnvfnksttrttttttakttk*isririptpi
idstttttttttttnrtkll**rg*lk*klftftilnnk*skqfk*

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09749-1 (Contig-U09749-1Q)
/CSM_Contig/Contig-U09749-1Q.Seq.d
(870 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09749-1 (Contig-U09749-1Q) /CSM_Contig/Conti... 882 0.0
Contig-U11920-1 (Contig-U11920-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U09004-1 (Contig-U09004-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U06384-1 (Contig-U06384-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U10318-1 (Contig-U10318-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U05527-1 (Contig-U05527-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U04636-1 (Contig-U04636-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U04354-1 (Contig-U04354-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U13027-1 (Contig-U13027-1Q) /CSM_Contig/Conti... 36 0.061
Contig-U12482-1 (Contig-U12482-1Q) /CSM_Contig/Conti... 36 0.061

>Contig-U09749-1 (Contig-U09749-1Q) /CSM_Contig/Contig-U09749-1Q.Seq.d
Length = 870

Score = 882 bits (445), Expect = 0.0
Identities = 445/445 (100%)
Strand = Plus / Plus


Query: 208 attcaccacaaatttcacatgtcctaacatgtagagaatatacgaaatcagtcgaacaat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 attcaccacaaatttcacatgtcctaacatgtagagaatatacgaaatcagtcgaacaat 267


Query: 268 taaattcaacaatagagcctttattatcaagttttagattaaacaatcttttattcttat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taaattcaacaatagagcctttattatcaagttttagattaaacaatcttttattcttat 327


Query: 328 ttattttattattcattccatcaattattgtcacagcgattaatgcaagtttaggaaaat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttattttattattcattccatcaattattgtcacagcgattaatgcaagtttaggaaaat 387


Query: 388 tatttttgccttctgtaattgttggtggtatttcatttctaattataatatttgcaatat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tatttttgccttctgtaattgttggtggtatttcatttctaattataatatttgcaatat 447


Query: 448 ttagaaaatcatttttacatagaaaacttgttcaaggcatatctagagatattagagatt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttagaaaatcatttttacatagaaaacttgttcaaggcatatctagagatattagagatt 507


Query: 508 ttaataaaaggtttcaaagtcgtcaagttttattagaatatttagtaactacaaaattta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttaataaaaggtttcaaagtcgtcaagttttattagaatatttagtaactacaaaattta 567


Query: 568 atcaaaagaatggtagagaatatagtattagtttacatttaatttatccaataataacat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atcaaaagaatggtagagaatatagtattagtttacatttaatttatccaataataacat 627


Query: 628 taactccgggaatgttttcaataaa 652
|||||||||||||||||||||||||
Sbjct: 628 taactccgggaatgttttcaataaa 652


Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus


Query: 777 gaacaaaattactatgatgaagaggataactcaaatgaaaactcttcacttttacgattt 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaacaaaattactatgatgaagaggataactcaaatgaaaactcttcacttttacgattt 836


Query: 837 taaataataaataatcaaaacaatttaaataaaa 870
||||||||||||||||||||||||||||||||||
Sbjct: 837 taaataataaataatcaaaacaatttaaataaaa 870


Score = 83.8 bits (42), Expect = 3e-16
Identities = 42/42 (100%)
Strand = Plus / Plus


Query: 696 aataaatctcaagaattagaatacccacccccattatcgatt 737
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aataaatctcaagaattagaatacccacccccattatcgatt 737


Score = 75.8 bits (38), Expect = 7e-14
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 90 atcgtctacttaaatatttaaaaaaatccaacacatta 127
||||||||||||||||||||||||||||||||||||||
Sbjct: 90 atcgtctacttaaatatttaaaaaaatccaacacatta 127


Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 1 aaaagtcttcatcatgtatatcctcta 27
|||||||||||||||||||||||||||
Sbjct: 1 aaaagtcttcatcatgtatatcctcta 27


Score = 38.2 bits (19), Expect = 0.015
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 163 ataaaattatttnaaaaaattntta 187
|||||||||||||||||||||||||
Sbjct: 163 ataaaattatttnaaaaaattntta 187


>Contig-U11920-1 (Contig-U11920-1Q) /CSM_Contig/Contig-U11920-1Q.Seq.d
Length = 1283

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 316 ttttattcttatttattttattatt 340
||||||| |||||||||||||||||
Sbjct: 96 ttttatttttatttattttattatt 72


>Contig-U09004-1 (Contig-U09004-1Q) /CSM_Contig/Contig-U09004-1Q.Seq.d
Length = 826

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 316 ttttattcttatttattttattatt 340
||||||| |||||||||||||||||
Sbjct: 128 ttttattattatttattttattatt 104


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,407
Number of Sequences: 6905
Number of extensions: 19407
Number of successful extensions: 2730
Number of sequences better than 10.0: 362
length of query: 870
length of database: 5,674,871
effective HSP length: 16
effective length of query: 854
effective length of database: 5,564,391
effective search space: 4751989914
effective search space used: 4751989914
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.17
Homology vs DNA
Query= Contig-U09749-1 (Contig-U09749-1Q) /CSM_Contig/Contig-U09749-1Q.Seq.d
(870 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ435221) Dictyostelium discoideum cDNA clone:ddv26p10, 3' ... 613 0.0 4
(BJ416450) Dictyostelium discoideum cDNA clone:ddv26p10, 5' ... 76 2e-23 3
(BJ416611) Dictyostelium discoideum cDNA clone:ddv26p21, 5' ... 76 2e-09 1
(CB856095) ri48b02.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo... 42 0.020 2
(EA102652) Sequence 35 from patent US 7195870. 48 0.028 2
(BD460304) Diagnosis of Diseases Associated with Cell Cycle. 48 0.028 2
(BD452226) Diagnosis of Diseases Associated with Cell Cycle. 48 0.028 2
(AX323555) Sequence 43 from Patent WO0192565. 48 0.028 2
(AX277872) Sequence 35 from Patent WO0177375. 48 0.028 2
(AX251840) Sequence 101 from Patent WO0168911. 48 0.028 2
(FK909376) EST_lsal_evj_947420 lsalevj mixed_tissue_mixed_st... 52 0.036 1
(FK909375) EST_lsal_evj_955100 lsalevj mixed_tissue_mixed_st... 52 0.036 1
(FK907124) EST_lsal_evj_961944 lsalevj mixed_tissue_mixed_st... 52 0.036 1
(FK907123) EST_lsal_evj_937752 lsalevj mixed_tissue_mixed_st... 52 0.036 1
(EY508233) EST_lsal_ch4_771073 lsalch4 whole Lepeophtheirus ... 52 0.036 1
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.041 9
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.065 8
(DX544830) GH_MBb0058M16r GH_MBb Gossypium hirsutum genomic ... 46 0.13 2
(DE599866) Bombyx mori genomic DNA, Fosmid clone:GBMFno258_p... 50 0.14 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.17 14
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.26 8
(AC090930) Homo sapiens chromosome 11 clone RP11-846N20 map ... 40 0.44 2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 48 0.56 1
(ER610150) 1093016303285 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.56 1
(ER440196) 1092963811700 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.56 1
(ER387057) 1094426031843 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.56 1
(EK311862) 1095462400054 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.56 1
(EJ993784) 1093023071117 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ966482) 1093022045562 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ960374) 1093018999625 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ894473) 1093018459731 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ868282) 1093018295277 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ787900) 1093017361554 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ772792) 1092973903978 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ767587) 1092963319603 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ754239) 1092963061552 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ745280) 1092962053754 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EJ418855) 1093012210932 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.56 1
(EJ414521) 1093012171782 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.56 1
(EJ301280) 1095390026864 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.56 1
(EJ133497) 1092343581193 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.56 1
(BX682551) Zebrafish DNA sequence from clone CH211-114M9 in ... 38 0.57 4
(CS468878) Sequence 69 from Patent EP1748080. 32 0.64 10
(CS419355) Sequence 69 from Patent WO2006094836. 32 0.64 10
(AX347043) Sequence 2114 from Patent WO0200928. 36 0.64 4
(BZ850786) CH240_278A9.TJ CHORI-240 Bos taurus genomic clone... 42 0.81 2
(CU466428) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.0 2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 32 1.1 18
(CU570704) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.3 7
(ED552179) Amel_4.0_Unscaffolded_1433 Apis mellifera BCM WGA... 44 1.5 2
(CR812928) Zebrafish DNA sequence from clone DKEY-238M17 in ... 36 1.6 7
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 1.6 11
(EK381410) 1095469462774 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.7 2
(AX345440) Sequence 511 from Patent WO0200928. 34 2.0 4
(EA724743) Sequence 103622 from patent US 7365185. 38 2.1 3
(AC156926) Bos taurus clone CH240-47K1, WORKING DRAFT SEQUEN... 34 2.2 5
(CU278559) Zebrafish DNA sequence from clone DKEY-77P23 in l... 46 2.2 1
(AC130239) Rattus norvegicus clone CH230-399E23, WORKING DRA... 46 2.2 1
(AC115559) Rattus norvegicus clone CH230-293G6, *** SEQUENCI... 46 2.2 1
(AC113679) Rattus norvegicus clone CH230-381K16, *** SEQUENC... 46 2.2 1
(AC221944) Bos taurus clone CH240-377D21, WORKING DRAFT SEQU... 46 2.2 1
(FH061529) CHO_OF3600xe07r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 2.2 1
(EJ976818) 1093022124684 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.2 1
(EJ962507) 1093022013419 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.2 1
(EJ518444) 1092955115728 Global-Ocean-Sampling_GS-29-01-01-1... 46 2.2 1
(ED382453) AUAC-aba64h02.b1 Ascaris suum whole genome shotgu... 46 2.2 1
(BZ942154) CH240_93M5.TV CHORI-240 Bos taurus genomic clone ... 46 2.2 1
(BZ385840) EINBF31TF EI_10_12_KB Entamoeba invadens genomic ... 46 2.2 1
(EB897394) 9896419 ZF26XL Danio rerio cDNA clone 3516834, mR... 46 2.2 1
(CX249558) 1301700 NCCCWA 02RT Oncorhynchus mykiss cDNA clon... 46 2.2 1
(CN325541) AGENCOURT_21835296 NIH_ZGC_10 Danio rerio cDNA cl... 46 2.2 1
(CK678541) ZF101-P00014-DEPE-F_O07 GISZF001_ra Danio rerio c... 46 2.2 1
(CF550429) AGENCOURT_15591778 NIH_ZGC_4 Danio rerio cDNA clo... 46 2.2 1
(BX567456) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1
(BX556378) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1
(BX555260) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1
(BX550196) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1
(BX549292) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1
(EY504003) CBBP7247.fwd CBBP Hirudo medicinalis hermaphrodit... 46 2.2 1
(EY490211) CBBP17514.fwd CBBP Hirudo medicinalis hermaphrodi... 46 2.2 1
(AC177674) Strongylocentrotus purpuratus clone R3-1017H22, W... 42 3.1 5
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 3.2 11
(CU469233) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.4 5
(EU352212) Aedes aegypti mitochondrion, complete genome. 36 3.5 5
(AC217698) Solanum tuberosum chromosome 1 clone RH050N11, **... 40 3.6 4
(AC232100) Solanum tuberosum strain Diploid genotype RH89-03... 40 3.6 5
(AM473470) Vitis vinifera, whole genome shotgun sequence, co... 32 3.8 6
(AE017308) Mycoplasma mobile 163K complete genome. 34 3.8 2
(AC133671) Rattus norvegicus clone CH230-223C7, *** SEQUENCI... 32 4.1 2
(AC106455) Rattus norvegicus clone CH230-219M10, *** SEQUENC... 32 4.1 2
(DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,... 36 4.1 7
(AC136391) Rattus norvegicus clone CH230-196L7, *** SEQUENCI... 32 4.2 2
(AX458634) Sequence 180 from Patent WO0246454. 36 4.2 3
(DX085545) AU_BAC008A2E08_Sp6 CHORI212 Ictalurus punctatus g... 34 4.3 2
(CE796157) tigr-gss-dog-17000331118643 Dog Library Canis lup... 42 5.0 2
(CS468877) Sequence 68 from Patent EP1748080. 32 5.0 9
(CS419354) Sequence 68 from Patent WO2006094836. 32 5.0 9
(AM461199) Vitis vinifera contig VV78X277643.8, whole genome... 34 5.1 2
(AM450067) Vitis vinifera contig VV78X177359.2, whole genome... 32 5.4 2
(AC199322) Zea mays chromosome 4 clone CH201-538L13; ZMMBBc0... 38 5.6 6

>(BJ435221) Dictyostelium discoideum cDNA clone:ddv26p10, 3' end,
single read.
Length = 664

Score = 613 bits (309), Expect(4) = 0.0
Identities = 309/309 (100%)
Strand = Plus / Minus


Query: 345 ccatcaattattgtcacagcgattaatgcaagtttaggaaaattatttttgccttctgta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ccatcaattattgtcacagcgattaatgcaagtttaggaaaattatttttgccttctgta 468


Query: 405 attgttggtggtatttcatttctaattataatatttgcaatatttagaaaatcattttta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 attgttggtggtatttcatttctaattataatatttgcaatatttagaaaatcattttta 408


Query: 465 catagaaaacttgttcaaggcatatctagagatattagagattttaataaaaggtttcaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 catagaaaacttgttcaaggcatatctagagatattagagattttaataaaaggtttcaa 348


Query: 525 agtcgtcaagttttattagaatatttagtaactacaaaatttaatcaaaagaatggtaga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agtcgtcaagttttattagaatatttagtaactacaaaatttaatcaaaagaatggtaga 288


Query: 585 gaatatagtattagtttacatttaatttatccaataataacattaactccgggaatgttt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaatatagtattagtttacatttaatttatccaataataacattaactccgggaatgttt 228


Query: 645 tcaataaat 653
|||||||||
Sbjct: 227 tcaataaat 219

Score = 174 bits (88), Expect(4) = 0.0
Identities = 88/88 (100%)
Strand = Plus / Minus


Query: 783 aattactatgatgaagaggataactcaaatgaaaactcttcacttttacgattttaaata 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 aattactatgatgaagaggataactcaaatgaaaactcttcacttttacgattttaaata 30


Query: 843 ataaataatcaaaacaatttaaataaaa 870
||||||||||||||||||||||||||||
Sbjct: 29 ataaataatcaaaacaatttaaataaaa 2

Score = 157 bits (79), Expect(4) = 0.0
Identities = 79/79 (100%)
Strand = Plus / Minus


Query: 208 attcaccacaaatttcacatgtcctaacatgtagagaatatacgaaatcagtcgaacaat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 attcaccacaaatttcacatgtcctaacatgtagagaatatacgaaatcagtcgaacaat 605


Query: 268 taaattcaacaatagagcc 286
|||||||||||||||||||
Sbjct: 604 taaattcaacaatagagcc 586

Score = 79.8 bits (40), Expect(4) = 0.0
Identities = 40/40 (100%)
Strand = Plus / Minus


Query: 698 taaatctcaagaattagaatacccacccccattatcgatt 737
||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 taaatctcaagaattagaatacccacccccattatcgatt 135

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 844,310,880
Number of extensions: 59679013
Number of successful extensions: 5258189
Number of sequences better than 10.0: 187
Length of query: 870
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 846
Effective length of database: 97,308,875,965
Effective search space: 82323309066390
Effective search space used: 82323309066390
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09749-1 (Contig-U09749-1Q) /CSM_Contig/Contig-U09749-1Q.Seq.d
(870 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 860,776,317
Number of extensions: 13319642
Number of successful extensions: 28774
Number of sequences better than 10.0: 0
Number of HSP's gapped: 28768
Number of HSP's successfully gapped: 0
Length of query: 290
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 163
Effective length of database: 634,022,584
Effective search space: 103345681192
Effective search space used: 103345681192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.00 gvh: 0.56 alm: 0.15 top: 0.43 tms: 0.20 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

28.0 %: mitochondrial
28.0 %: endoplasmic reticulum
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for Contig-U09749-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0