Contig-U09749-1 |
Contig ID |
Contig-U09749-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
860 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
3783983 |
End point |
3784816 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
3 |
Link to clone list |
U09749 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.17 |
Homology vs DNA |
Query= Contig-U09749-1 (Contig-U09749-1Q) /CSM_Contig/Contig-U09749-1Q.Seq.d (870 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ435221) Dictyostelium discoideum cDNA clone:ddv26p10, 3' ... 613 0.0 4 (BJ416450) Dictyostelium discoideum cDNA clone:ddv26p10, 5' ... 76 2e-23 3 (BJ416611) Dictyostelium discoideum cDNA clone:ddv26p21, 5' ... 76 2e-09 1 (CB856095) ri48b02.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo... 42 0.020 2 (EA102652) Sequence 35 from patent US 7195870. 48 0.028 2 (BD460304) Diagnosis of Diseases Associated with Cell Cycle. 48 0.028 2 (BD452226) Diagnosis of Diseases Associated with Cell Cycle. 48 0.028 2 (AX323555) Sequence 43 from Patent WO0192565. 48 0.028 2 (AX277872) Sequence 35 from Patent WO0177375. 48 0.028 2 (AX251840) Sequence 101 from Patent WO0168911. 48 0.028 2 (FK909376) EST_lsal_evj_947420 lsalevj mixed_tissue_mixed_st... 52 0.036 1 (FK909375) EST_lsal_evj_955100 lsalevj mixed_tissue_mixed_st... 52 0.036 1 (FK907124) EST_lsal_evj_961944 lsalevj mixed_tissue_mixed_st... 52 0.036 1 (FK907123) EST_lsal_evj_937752 lsalevj mixed_tissue_mixed_st... 52 0.036 1 (EY508233) EST_lsal_ch4_771073 lsalch4 whole Lepeophtheirus ... 52 0.036 1 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.041 9 (AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.065 8 (DX544830) GH_MBb0058M16r GH_MBb Gossypium hirsutum genomic ... 46 0.13 2 (DE599866) Bombyx mori genomic DNA, Fosmid clone:GBMFno258_p... 50 0.14 1 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.17 14 (AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.26 8 (AC090930) Homo sapiens chromosome 11 clone RP11-846N20 map ... 40 0.44 2 (CR382400) Plasmodium falciparum chromosome 6, complete sequ... 48 0.56 1 (ER610150) 1093016303285 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.56 1 (ER440196) 1092963811700 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.56 1 (ER387057) 1094426031843 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.56 1 (EK311862) 1095462400054 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.56 1 (EJ993784) 1093023071117 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ966482) 1093022045562 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ960374) 1093018999625 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ894473) 1093018459731 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ868282) 1093018295277 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ787900) 1093017361554 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ772792) 1092973903978 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ767587) 1092963319603 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ754239) 1092963061552 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ745280) 1092962053754 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1 (EJ418855) 1093012210932 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.56 1 (EJ414521) 1093012171782 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.56 1 (EJ301280) 1095390026864 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.56 1 (EJ133497) 1092343581193 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.56 1 (BX682551) Zebrafish DNA sequence from clone CH211-114M9 in ... 38 0.57 4 (CS468878) Sequence 69 from Patent EP1748080. 32 0.64 10 (CS419355) Sequence 69 from Patent WO2006094836. 32 0.64 10 (AX347043) Sequence 2114 from Patent WO0200928. 36 0.64 4 (BZ850786) CH240_278A9.TJ CHORI-240 Bos taurus genomic clone... 42 0.81 2 (CU466428) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.0 2 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 32 1.1 18 (CU570704) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.3 7 (ED552179) Amel_4.0_Unscaffolded_1433 Apis mellifera BCM WGA... 44 1.5 2 (CR812928) Zebrafish DNA sequence from clone DKEY-238M17 in ... 36 1.6 7 (AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 1.6 11 (EK381410) 1095469462774 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.7 2 (AX345440) Sequence 511 from Patent WO0200928. 34 2.0 4 (EA724743) Sequence 103622 from patent US 7365185. 38 2.1 3 (AC156926) Bos taurus clone CH240-47K1, WORKING DRAFT SEQUEN... 34 2.2 5 (CU278559) Zebrafish DNA sequence from clone DKEY-77P23 in l... 46 2.2 1 (AC130239) Rattus norvegicus clone CH230-399E23, WORKING DRA... 46 2.2 1 (AC115559) Rattus norvegicus clone CH230-293G6, *** SEQUENCI... 46 2.2 1 (AC113679) Rattus norvegicus clone CH230-381K16, *** SEQUENC... 46 2.2 1 (AC221944) Bos taurus clone CH240-377D21, WORKING DRAFT SEQU... 46 2.2 1 (FH061529) CHO_OF3600xe07r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 2.2 1 (EJ976818) 1093022124684 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.2 1 (EJ962507) 1093022013419 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.2 1 (EJ518444) 1092955115728 Global-Ocean-Sampling_GS-29-01-01-1... 46 2.2 1 (ED382453) AUAC-aba64h02.b1 Ascaris suum whole genome shotgu... 46 2.2 1 (BZ942154) CH240_93M5.TV CHORI-240 Bos taurus genomic clone ... 46 2.2 1 (BZ385840) EINBF31TF EI_10_12_KB Entamoeba invadens genomic ... 46 2.2 1 (EB897394) 9896419 ZF26XL Danio rerio cDNA clone 3516834, mR... 46 2.2 1 (CX249558) 1301700 NCCCWA 02RT Oncorhynchus mykiss cDNA clon... 46 2.2 1 (CN325541) AGENCOURT_21835296 NIH_ZGC_10 Danio rerio cDNA cl... 46 2.2 1 (CK678541) ZF101-P00014-DEPE-F_O07 GISZF001_ra Danio rerio c... 46 2.2 1 (CF550429) AGENCOURT_15591778 NIH_ZGC_4 Danio rerio cDNA clo... 46 2.2 1 (BX567456) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1 (BX556378) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1 (BX555260) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1 (BX550196) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1 (BX549292) Glossina morsitans morsitans (Tseatse fly) EST fr... 46 2.2 1 (EY504003) CBBP7247.fwd CBBP Hirudo medicinalis hermaphrodit... 46 2.2 1 (EY490211) CBBP17514.fwd CBBP Hirudo medicinalis hermaphrodi... 46 2.2 1 (AC177674) Strongylocentrotus purpuratus clone R3-1017H22, W... 42 3.1 5 (AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 3.2 11 (CU469233) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.4 5 (EU352212) Aedes aegypti mitochondrion, complete genome. 36 3.5 5 (AC217698) Solanum tuberosum chromosome 1 clone RH050N11, **... 40 3.6 4 (AC232100) Solanum tuberosum strain Diploid genotype RH89-03... 40 3.6 5 (AM473470) Vitis vinifera, whole genome shotgun sequence, co... 32 3.8 6 (AE017308) Mycoplasma mobile 163K complete genome. 34 3.8 2 (AC133671) Rattus norvegicus clone CH230-223C7, *** SEQUENCI... 32 4.1 2 (AC106455) Rattus norvegicus clone CH230-219M10, *** SEQUENC... 32 4.1 2 (DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,... 36 4.1 7 (AC136391) Rattus norvegicus clone CH230-196L7, *** SEQUENCI... 32 4.2 2 (AX458634) Sequence 180 from Patent WO0246454. 36 4.2 3 (DX085545) AU_BAC008A2E08_Sp6 CHORI212 Ictalurus punctatus g... 34 4.3 2 (CE796157) tigr-gss-dog-17000331118643 Dog Library Canis lup... 42 5.0 2 (CS468877) Sequence 68 from Patent EP1748080. 32 5.0 9 (CS419354) Sequence 68 from Patent WO2006094836. 32 5.0 9 (AM461199) Vitis vinifera contig VV78X277643.8, whole genome... 34 5.1 2 (AM450067) Vitis vinifera contig VV78X177359.2, whole genome... 32 5.4 2 (AC199322) Zea mays chromosome 4 clone CH201-538L13; ZMMBBc0... 38 5.6 6
>(BJ435221) Dictyostelium discoideum cDNA clone:ddv26p10, 3' end, single read. Length = 664
Score = 613 bits (309), Expect(4) = 0.0 Identities = 309/309 (100%) Strand = Plus / Minus
Query: 345 ccatcaattattgtcacagcgattaatgcaagtttaggaaaattatttttgccttctgta 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 527 ccatcaattattgtcacagcgattaatgcaagtttaggaaaattatttttgccttctgta 468
Query: 405 attgttggtggtatttcatttctaattataatatttgcaatatttagaaaatcattttta 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 467 attgttggtggtatttcatttctaattataatatttgcaatatttagaaaatcattttta 408
Query: 465 catagaaaacttgttcaaggcatatctagagatattagagattttaataaaaggtttcaa 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 407 catagaaaacttgttcaaggcatatctagagatattagagattttaataaaaggtttcaa 348
Query: 525 agtcgtcaagttttattagaatatttagtaactacaaaatttaatcaaaagaatggtaga 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 agtcgtcaagttttattagaatatttagtaactacaaaatttaatcaaaagaatggtaga 288
Query: 585 gaatatagtattagtttacatttaatttatccaataataacattaactccgggaatgttt 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 gaatatagtattagtttacatttaatttatccaataataacattaactccgggaatgttt 228
Query: 645 tcaataaat 653 ||||||||| Sbjct: 227 tcaataaat 219
Score = 174 bits (88), Expect(4) = 0.0 Identities = 88/88 (100%) Strand = Plus / Minus
Query: 783 aattactatgatgaagaggataactcaaatgaaaactcttcacttttacgattttaaata 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89 aattactatgatgaagaggataactcaaatgaaaactcttcacttttacgattttaaata 30
Query: 843 ataaataatcaaaacaatttaaataaaa 870 |||||||||||||||||||||||||||| Sbjct: 29 ataaataatcaaaacaatttaaataaaa 2
Score = 157 bits (79), Expect(4) = 0.0 Identities = 79/79 (100%) Strand = Plus / Minus
Query: 208 attcaccacaaatttcacatgtcctaacatgtagagaatatacgaaatcagtcgaacaat 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 attcaccacaaatttcacatgtcctaacatgtagagaatatacgaaatcagtcgaacaat 605
Query: 268 taaattcaacaatagagcc 286 ||||||||||||||||||| Sbjct: 604 taaattcaacaatagagcc 586
Score = 79.8 bits (40), Expect(4) = 0.0 Identities = 40/40 (100%) Strand = Plus / Minus
Query: 698 taaatctcaagaattagaatacccacccccattatcgatt 737 |||||||||||||||||||||||||||||||||||||||| Sbjct: 174 taaatctcaagaattagaatacccacccccattatcgatt 135
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 844,310,880 Number of extensions: 59679013 Number of successful extensions: 5258189 Number of sequences better than 10.0: 187 Length of query: 870 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 846 Effective length of database: 97,308,875,965 Effective search space: 82323309066390 Effective search space used: 82323309066390 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.26 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |