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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U09720-1
Contig ID Contig-U09720-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09720-1 (Contig-U09720-1Q) /CSM_Contig/Contig-U09720-1Q.Seq.d
CACTGTTGGCCTACTGGNACGCACAAATAAAATGAATAACCAAGTAAAAC
CAACTTTATCAAATAAAGCAGAAATAATAAATAAATGGTTAATTGATAAT
GGTGTAAGAATTAATAATAAATTAATTAAAATAGTTTATTTAGGAAAGGA
AAATAATTTTGAGCAAACTGAAAATACAACAGCAACAACTACTGCAAGTG
AAAGAATAAATGATTCAATTGTATCAGGATTAGGTGTTATTAGTTTAAAA
GAATTAAAAGTTGATGATATTGTAGCAAAAATTCCAAAATCAATTATTTT
ATCGATTCATACATCCTCAATTTCAAATATATTAGAGAAATATAAAATTG
AAAATAATATAGGTACATCGATTGCATTAATACATGAAGCATCATTAGGT
GAAAAATCAAAATGGTATGGATATATTTCATCATTACCACGTAAAGTTGA
TGTACCAATTCTATGGGATTCAGAATCAAGAAAGCTTTTAAAAGGTACAG
CAATAGAAGATGTTTTAAATGGTGATGATATTTTAATTAATCAAGTTTAC
GCANATGTAATTGAATCAATTCTCTCAAAAAATCATNCANAAATATTTGG
AGATAAAGAACTATNTNNNNTTGAAAACTTTNNNNNNNNN----------
NNNNNNNNNNAACTAATGAAGAAGATAAAGATACAATTATTGAAGAAGAT
GATGAACATTTATATATTAAAGTTGTTAAAGGTGTTGAAGCAAATAAAGA
AGTTTATAATACATATGGTGATCATGATAATGCAATTCTTTTAAGTAAAT
ATGGATTTTTAGAGATGGATAATCCATGTGATAGATTATCAATTGATAAA
CAATTAGTTGATAAAGAATTAGAATTGATTGGAGCAGAGAATCAAATAAC
TAGAATGGATTTATTTAATCGTATTAGTTTTTATGCTGAAATGTTTGATA
TTGATTCCAGAAATAATCATGCAATTGAAAATGATGGTAGATTAGATGAT
GCATTAGTTTGTTCAGTTGGTATTGCATTAGCACCACAATCAATTTTCCA
AAGTTGGAAATCAATGTCTGAACATAAAAGAGAGAAATACTTTGAACAAT
TAGAAGCTGAAGATATCGTCAAACAAAGTCAATTAGTACGTAATACTTTA
TTATCAATTTTAAATAAATTATTTTCAAATTATAATAATTCAAATGAAAC
AACAGCAACAACAACAATTGGACAAGATCAAGAAAAATTATCAACTTTAA
AAAATCAAAGAGAAATTATTGCTCAATCTTTAAAAATTTGNAAAAAACTT
TAATTAATAAATCAATNATTATTATAAAAATTT
Gap gap included
Contig length 1323
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5906974
End point 5908260
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09720
List of clone(s) 

est1=VFL259F,1,631
est2=VFL259Z,632,1305
Translated Amino Acid sequence 
TVGLLXRTNKMNNQVKPTLSNKAEIINKWLIDNGVRINNKLIKIVYLGKENNFEQTENTT
ATTTASERINDSIVSGLGVISLKELKVDDIVAKIPKSIILSIHTSSISNILEKYKIENNI
GTSIALIHEASLGEKSKWYGYISSLPRKVDVPILWDSESRKLLKGTAIEDVLNGDDILIN
QVYAXVIESILSKNHXXIFGDKELXXXENFXXX---

---XXXTNEEDKDTIIEEDDEHLYIKVVKGVEANKEVYNTYGDHDNAILLSKYGFLEMDN
PCDRLSIDKQLVDKELELIGAENQITRMDLFNRISFYAEMFDIDSRNNHAIENDGRLDDA
LVCSVGIALAPQSIFQSWKSMSEHKREKYFEQLEAEDIVKQSQLVRNTLLSILNKLFSNY
NNSNETTATTTIGQDQEKLSTLKNQREIIAQSLKIXKKL*linqxll*kf
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgthk*ne*psktnfik*srnnk*mvn**wckn***in*nslfrkgk*f*an*kyn
snnyck*knk*fncirircy*fkriks**ycsknskinyfidsyilnfkyirei*n*k*y
ryidcint*siir*kikmvwiyfiitt*s*ctnsmgfrikkafkrysnrrcfkw**yfn*
sslrxcn*inslkksxxniwr*rtxxx*klxxx---

---xxxxlmkkikiqllkkmmniyilkllkvlkqikkfiihmvimimqff*vnmdf*rwi
ihvidyqlinn*likn*n*leqrik*lewiylivlvfmlkclilipeiimqlkmmvd*mm
h*fvqlvlh*hhnqfskvgnqclnikerntlnn*klkissnkvn*yvilyyqf*inyfqi
iiiqmkqqqqqqldkikknyql*kikeklllnl*kfxknfn**inxyykn

Frame B:
TVGLLXRTNKMNNQVKPTLSNKAEIINKWLIDNGVRINNKLIKIVYLGKENNFEQTENTT
ATTTASERINDSIVSGLGVISLKELKVDDIVAKIPKSIILSIHTSSISNILEKYKIENNI
GTSIALIHEASLGEKSKWYGYISSLPRKVDVPILWDSESRKLLKGTAIEDVLNGDDILIN
QVYAXVIESILSKNHXXIFGDKELXXXENFXXX---

---xxxn**rr*ryny*rr**tfiy*sc*rc*sk*rsl*yiw*s**cnsfk*iwifrdg*
sm**iin**tis**riridwsresnn*ngfi*sy*flc*nv*y*fqk*scn*k*w*ir*c
islfswycisttinfpkleinv*t*kreil*tirs*ryrqtksist*yfiinfk*iifkl
**fk*nnsnnnnwtrsrkiinfkkskrnycsifknlxktlinksxiiiki

Frame C:
llaywxaqik*itk*nqlyqikqk**ing*limv*eliin*lk*fi*erkiilsklkiqq
qqllqvke*miqlyqd*vllv*kn*klmil*qkfqnqlfyrfihpqfqiy*rniklkii*
vhrlh*ymkhh*vknqngmdifhhyhvklmyqfygiqnqesf*kvqq*kmf*mvmif*li
kftxm*lnqfsqkixxkyleiknyxxlktxxx---

---XXXTNEEDKDTIIEEDDEHLYIKVVKGVEANKEVYNTYGDHDNAILLSKYGFLEMDN
PCDRLSIDKQLVDKELELIGAENQITRMDLFNRISFYAEMFDIDSRNNHAIENDGRLDDA
LVCSVGIALAPQSIFQSWKSMSEHKREKYFEQLEAEDIVKQSQLVRNTLLSILNKLFSNY
NNSNETTATTTIGQDQEKLSTLKNQREIIAQSLKIXKKL*linqxll*kf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09720-1 (Contig-U09720-1Q)
/CSM_Contig/Contig-U09720-1Q.Seq.d
         (1333 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09720-1 (Contig-U09720-1Q) /CSM_Contig/Conti...  1166  0.0
Contig-U11684-1 (Contig-U11684-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U09153-1 (Contig-U09153-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U03915-1 (Contig-U03915-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13687-1 (Contig-U13687-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12784-1 (Contig-U12784-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12512-1 (Contig-U12512-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11087-1 (Contig-U11087-1Q) /CSM_Contig/Conti...    42  0.002

>Contig-U09720-1 (Contig-U09720-1Q) /CSM_Contig/Contig-U09720-1Q.Seq.d
          Length = 1333

 Score = 1166 bits (588), Expect = 0.0
 Identities = 588/588 (100%)
 Strand = Plus / Plus

                                                                        
Query: 661  aactaatgaagaagataaagatacaattattgaagaagatgatgaacatttatatattaa 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  aactaatgaagaagataaagatacaattattgaagaagatgatgaacatttatatattaa 720

                                                                        
Query: 721  agttgttaaaggtgttgaagcaaataaagaagtttataatacatatggtgatcatgataa 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  agttgttaaaggtgttgaagcaaataaagaagtttataatacatatggtgatcatgataa 780

                                                                        
Query: 781  tgcaattcttttaagtaaatatggatttttagagatggataatccatgtgatagattatc 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  tgcaattcttttaagtaaatatggatttttagagatggataatccatgtgatagattatc 840

                                                                        
Query: 841  aattgataaacaattagttgataaagaattagaattgattggagcagagaatcaaataac 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  aattgataaacaattagttgataaagaattagaattgattggagcagagaatcaaataac 900

                                                                        
Query: 901  tagaatggatttatttaatcgtattagtttttatgctgaaatgtttgatattgattccag 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tagaatggatttatttaatcgtattagtttttatgctgaaatgtttgatattgattccag 960

                                                                        
Query: 961  aaataatcatgcaattgaaaatgatggtagattagatgatgcattagtttgttcagttgg 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  aaataatcatgcaattgaaaatgatggtagattagatgatgcattagtttgttcagttgg 1020

                                                                        
Query: 1021 tattgcattagcaccacaatcaattttccaaagttggaaatcaatgtctgaacataaaag 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tattgcattagcaccacaatcaattttccaaagttggaaatcaatgtctgaacataaaag 1080

                                                                        
Query: 1081 agagaaatactttgaacaattagaagctgaagatatcgtcaaacaaagtcaattagtacg 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 agagaaatactttgaacaattagaagctgaagatatcgtcaaacaaagtcaattagtacg 1140

                                                                        
Query: 1141 taatactttattatcaattttaaataaattattttcaaattataataattcaaatgaaac 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 taatactttattatcaattttaaataaattattttcaaattataataattcaaatgaaac 1200

                                                            
Query: 1201 aacagcaacaacaacaattggacaagatcaagaaaaattatcaacttt 1248
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aacagcaacaacaacaattggacaagatcaagaaaaattatcaacttt 1248


 Score =  954 bits (481), Expect = 0.0
 Identities = 505/505 (100%)
 Strand = Plus / Plus

                                                                       
Query: 127 taaaatagtttatttaggaaaggaaaataattttgagcaaactgaaaatacaacagcaac 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 taaaatagtttatttaggaaaggaaaataattttgagcaaactgaaaatacaacagcaac 186

                                                                       
Query: 187 aactactgcaagtgaaagaataaatgattcaattgtatcaggattaggtgttattagttt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aactactgcaagtgaaagaataaatgattcaattgtatcaggattaggtgttattagttt 246

                                                                       
Query: 247 aaaagaattaaaagttgatgatattgtagcaaaaattccaaaatcaattattttatcgat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaaagaattaaaagttgatgatattgtagcaaaaattccaaaatcaattattttatcgat 306

                                                                       
Query: 307 tcatacatcctcaatttcaaatatattagagaaatataaaattgaaaataatataggtac 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tcatacatcctcaatttcaaatatattagagaaatataaaattgaaaataatataggtac 366

                                                                       
Query: 367 atcgattgcattaatacatgaagcatcattaggtgaaaaatcaaaatggtatggatatat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atcgattgcattaatacatgaagcatcattaggtgaaaaatcaaaatggtatggatatat 426

                                                                       
Query: 427 ttcatcattaccacgtaaagttgatgtaccaattctatgggattcagaatcaagaaagct 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttcatcattaccacgtaaagttgatgtaccaattctatgggattcagaatcaagaaagct 486

                                                                       
Query: 487 tttaaaaggtacagcaatagaagatgttttaaatggtgatgatattttaattaatcaagt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttaaaaggtacagcaatagaagatgttttaaatggtgatgatattttaattaatcaagt 546

                                                                       
Query: 547 ttacgcanatgtaattgaatcaattctctcaaaaaatcatncanaaatatttggagataa 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttacgcanatgtaattgaatcaattctctcaaaaaatcatncanaaatatttggagataa 606

                                    
Query: 607 agaactatntnnnnttgaaaacttt 631
           |||||||||||||||||||||||||
Sbjct: 607 agaactatntnnnnttgaaaacttt 631


 Score =  135 bits (68), Expect = 1e-31
 Identities = 71/71 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cactgttggcctactggnacgcacaaataaaatgaataaccaagtaaaaccaactttatc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cactgttggcctactggnacgcacaaataaaatgaataaccaagtaaaaccaactttatc 60

                     
Query: 61 aaataaagcag 71
          |||||||||||
Sbjct: 61 aaataaagcag 71


 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                                
Query: 1298 ctttaattaataaatcaatnattattataaaaattt 1333
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1298 ctttaattaataaatcaatnattattataaaaattt 1333


>Contig-U11684-1 (Contig-U11684-1Q) /CSM_Contig/Contig-U11684-1Q.Seq.d
          Length = 1451

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 1190 tcaaatgaaacaacagcaacaacaacaa 1217
            ||||||| ||||||||||||||||||||
Sbjct: 679  tcaaatgtaacaacagcaacaacaacaa 706


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1201 aacagcaacaacaaca 1216
            ||||||||||||||||
Sbjct: 442  aacagcaacaacaaca 457


>Contig-U09153-1 (Contig-U09153-1Q) /CSM_Contig/Contig-U09153-1Q.Seq.d
          Length = 924

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 1191 caaatgaaacaacagcaacaacaacaa 1217
            ||||| |||||||||||||||||||||
Sbjct: 234  caaataaaacaacagcaacaacaacaa 260


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,567
Number of Sequences: 6905
Number of extensions: 35567
Number of successful extensions: 7971
Number of sequences better than 10.0: 1368
length of query: 1333
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1317
effective length of database: 5,564,391
effective search space: 7328302947
effective search space used: 7328302947
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.17
Homology vs DNA 
Query= Contig-U09720-1 (Contig-U09720-1Q) /CSM_Contig/Contig-U09720-1Q.Seq.d
         (1333 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ433984) Dictyostelium discoideum cDNA clone:ddv23e16, 3' ...  1134   0.0    1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...  1126   0.0    1
(BJ415733) Dictyostelium discoideum cDNA clone:ddv23e16, 5' ...   940   0.0    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    40   3e-06  9
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    42   3e-05  15
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    62   6e-05  1
(AP005824) Oryza sativa Japonica Group genomic DNA, chromoso...    62   6e-05  1
(EA679220) Sequence 58099 from patent US 7365185.                  62   6e-05  1
(AP003945) Oryza sativa Japonica Group genomic DNA, chromoso...    62   6e-05  1
(AG832066) Oryza sativa Indica Group genomic DNA, BAC end se...    62   6e-05  1
(BJ327509) Dictyostelium discoideum cDNA clone:dda20p13, 5' ...    44   1e-04  3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   1e-04  8
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    40   2e-04  21
(AC204449) Tupaia belangeri clone CH275-409C15, WORKING DRAF...    60   2e-04  1
(BJ360439) Dictyostelium discoideum cDNA clone:ddc6i05, 5' e...    40   4e-04  3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    36   6e-04  20
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   8e-04  14
(EB621687) AGENCOURT_56942381 D. grimshawi EST Drosophila gr...    50   0.001  2
(BJ392247) Dictyostelium discoideum cDNA clone:dds26o21, 5' ...    34   0.002  4
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    44   0.003  2
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    42   0.003  14
(BJ370075) Dictyostelium discoideum cDNA clone:ddc52e05, 5' ...    40   0.003  3
(BJ394026) Dictyostelium discoideum cDNA clone:dds33c17, 5' ...    32   0.003  4
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    40   0.003  8
(EC762070) PSE00008269 rw_mgpallid Polysphondylium pallidum ...    44   0.004  2
(BJ392279) Dictyostelium discoideum cDNA clone:dds27g03, 5' ...    40   0.005  3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    40   0.005  10
(BJ363812) Dictyostelium discoideum cDNA clone:ddc28j15, 5' ...    40   0.005  3
(BJ336923) Dictyostelium discoideum cDNA clone:dda55l13, 5' ...    40   0.006  3
(BJ336901) Dictyostelium discoideum cDNA clone:dda55f14, 5' ...    40   0.007  3
(BJ392002) Dictyostelium discoideum cDNA clone:dds26c02, 5' ...    40   0.008  3
(BJ367635) Dictyostelium discoideum cDNA clone:ddc43n09, 5' ...    40   0.008  3
(BJ392130) Dictyostelium discoideum cDNA clone:dds26c15, 5' ...    40   0.008  3
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    40   0.009  10
(U27807) Plasmodium falciparum p23-like protein mRNA, partia...    40   0.009  3
(BJ396811) Dictyostelium discoideum cDNA clone:dds44d06, 5' ...    40   0.009  3
(BJ416781) Dictyostelium discoideum cDNA clone:ddv27d07, 5' ...    40   0.010  3
(BJ342772) Dictyostelium discoideum cDNA clone:dda1c18, 3' e...    34   0.013  4
(EY389761) CAXA8020.fwd CAXA Helobdella robusta Subtracted L...    42   0.014  3
(BJ389158) Dictyostelium discoideum cDNA clone:dds17p16, 5' ...    42   0.015  2
(EY382484) CAXA407.fwd CAXA Helobdella robusta Subtracted La...    42   0.015  3
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    42   0.018  15
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    38   0.018  7
(BJ352829) Dictyostelium discoideum cDNA clone:dda48f01, 3' ...    34   0.020  4
(BJ373026) Dictyostelium discoideum cDNA clone:ddc15l12, 3' ...    34   0.023  4
(BJ351096) Dictyostelium discoideum cDNA clone:dda42d06, 3' ...    34   0.023  4
(BJ372868) Dictyostelium discoideum cDNA clone:ddc14l14, 3' ...    34   0.024  4
(BJ362912) Dictyostelium discoideum cDNA clone:ddc24d05, 5' ...    36   0.026  3
(BJ379761) Dictyostelium discoideum cDNA clone:ddc35l22, 3' ...    34   0.027  4
(BJ325592) Dictyostelium discoideum cDNA clone:dda1e14, 5' e...    38   0.027  3
(BJ398300) Dictyostelium discoideum cDNA clone:dds11k23, 3' ...    34   0.029  4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.029  16
(BJ392182) Dictyostelium discoideum cDNA clone:dds26o14, 5' ...    40   0.030  3
(BJ394117) Dictyostelium discoideum cDNA clone:dds33i21, 5' ...    40   0.030  3
(BJ337093) Dictyostelium discoideum cDNA clone:dda56a08, 5' ...    40   0.031  3
(BJ370043) Dictyostelium discoideum cDNA clone:ddc52n24, 5' ...    40   0.032  3
(BJ406771) Dictyostelium discoideum cDNA clone:dds36k08, 3' ...    34   0.032  4
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    40   0.032  12
(BJ370299) Dictyostelium discoideum cDNA clone:ddc53k17, 5' ...    40   0.033  3
(BJ394109) Dictyostelium discoideum cDNA clone:dds33g24, 5' ...    40   0.033  3
(BJ369940) Dictyostelium discoideum cDNA clone:ddc52f17, 5' ...    40   0.034  3
(AC109529) Rattus norvegicus clone CH230-276K5, *** SEQUENCI...    36   0.035  2
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    42   0.035  17
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    40   0.037  2
(BJ350096) Dictyostelium discoideum cDNA clone:dda38n13, 3' ...    34   0.037  4
(BJ353098) Dictyostelium discoideum cDNA clone:dda49a05, 3' ...    34   0.037  4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   0.039  6
(BJ437975) Dictyostelium discoideum cDNA clone:ddv35p23, 3' ...    34   0.041  4
(X97280) D.discoideum mRNA for calcineurin A.                      40   0.043  2
(U22397) Dictyostelium discoideum calcineurin mRNA, complete...    40   0.043  2
(CZ285634) cp42d08.f Candida parapsilosis Random Genomic Lib...    38   0.044  2
(BJ385819) Dictyostelium discoideum cDNA clone:ddc56c07, 3' ...    40   0.045  2
(BJ346764) Dictyostelium discoideum cDNA clone:dda24o23, 3' ...    40   0.045  2
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         34   0.049  19
(CZ281498) cp17c10.r Candida parapsilosis Random Genomic Lib...    38   0.049  3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    38   0.050  8
(BJ325658) Dictyostelium discoideum cDNA clone:dda1i20, 5' e...    40   0.051  3
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    36   0.052  10
(CV510438) kc59b12.y1 Xiphinema index CSEQDA01 Xiphinema ind...    44   0.052  2
(CV512272) kc81h07.y1 Xiphinema index CSEQDL01 Xiphinema ind...    44   0.054  2
(AC153286) Bos taurus clone CH240-19N24, WORKING DRAFT SEQUE...    52   0.055  1
(AC120573) Rattus norvegicus clone CH230-168O1, WORKING DRAF...    52   0.055  1
(AC189455) Brassica rapa subsp. pekinensis clone KBrB072L19,...    52   0.055  1
(AC166402) Bos taurus clone CH240-184B24, WORKING DRAFT SEQU...    52   0.055  1
(EV565844) RR4A472TF RR4(PB) Raphanus raphanistrum subsp. la...    52   0.055  1
(FF702982) XABT111484.fwd Gateway compatible cien cDNA libra...    46   0.063  2
(CP000727) Clostridium botulinum A str. Hall, complete genome.     42   0.067  17
(CV581554) kc96b03.y1 Xiphinema index CSEQDL01 Xiphinema ind...    44   0.068  2
(EB602407) AGENCOURT_54967750 D. mojavensis EST Drosophila m...    42   0.069  2
(BJ330276) Dictyostelium discoideum cDNA clone:dda31a01, 5' ...    36   0.070  3
(AF402141) Schizophyllum commune mitochondrial DNA, complete...    34   0.073  9
(AX392733) Sequence 23 from Patent WO0212526.                      36   0.073  7
(AR707080) Sequence 23 from patent US 6933145.                     36   0.073  7
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   0.079  19
(EJ974145) 1093022103919 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.079  2
(BJ413886) Dictyostelium discoideum cDNA clone:ddv17e07, 5' ...    34   0.080  3
(BJ336884) Dictyostelium discoideum cDNA clone:dda55b14, 5' ...    32   0.081  4
(AC006898) Caenorhabditis elegans clone Y73B6x, *** SEQUENCI...    40   0.082  12
(DY887436) CeleSEQ3759 Cunninghamella elegans pBluescript (E...    34   0.085  4
(BJ370365) Dictyostelium discoideum cDNA clone:ddc53i21, 5' ...    32   0.086  4

>(BJ433984) Dictyostelium discoideum cDNA clone:ddv23e16, 3' end,
            single read.
          Length = 674

 Score = 1134 bits (572), Expect = 0.0
 Identities = 572/572 (100%)
 Strand = Plus / Minus


Query: 661  aactaatgaagaagataaagatacaattattgaagaagatgatgaacatttatatattaa 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  aactaatgaagaagataaagatacaattattgaagaagatgatgaacatttatatattaa 615


Query: 721  agttgttaaaggtgttgaagcaaataaagaagtttataatacatatggtgatcatgataa 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614  agttgttaaaggtgttgaagcaaataaagaagtttataatacatatggtgatcatgataa 555


Query: 781  tgcaattcttttaagtaaatatggatttttagagatggataatccatgtgatagattatc 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554  tgcaattcttttaagtaaatatggatttttagagatggataatccatgtgatagattatc 495


Query: 841  aattgataaacaattagttgataaagaattagaattgattggagcagagaatcaaataac 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494  aattgataaacaattagttgataaagaattagaattgattggagcagagaatcaaataac 435


Query: 901  tagaatggatttatttaatcgtattagtttttatgctgaaatgtttgatattgattccag 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434  tagaatggatttatttaatcgtattagtttttatgctgaaatgtttgatattgattccag 375


Query: 961  aaataatcatgcaattgaaaatgatggtagattagatgatgcattagtttgttcagttgg 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374  aaataatcatgcaattgaaaatgatggtagattagatgatgcattagtttgttcagttgg 315


Query: 1021 tattgcattagcaccacaatcaattttccaaagttggaaatcaatgtctgaacataaaag 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314  tattgcattagcaccacaatcaattttccaaagttggaaatcaatgtctgaacataaaag 255


Query: 1081 agagaaatactttgaacaattagaagctgaagatatcgtcaaacaaagtcaattagtacg 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254  agagaaatactttgaacaattagaagctgaagatatcgtcaaacaaagtcaattagtacg 195


Query: 1141 taatactttattatcaattttaaataaattattttcaaattataataattcaaatgaaac 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194  taatactttattatcaattttaaataaattattttcaaattataataattcaaatgaaac 135


Query: 1201 aacagcaacaacaacaattggacaagatcaag 1232
            ||||||||||||||||||||||||||||||||
Sbjct: 134  aacagcaacaacaacaattggacaagatcaag 103

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,549,374,165
Number of extensions: 106871210
Number of successful extensions: 10767065
Number of sequences better than 10.0: 1338
Length of query: 1333
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1309
Effective length of database: 97,308,875,965
Effective search space: 127377318638185
Effective search space used: 127377318638185
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09720-1 (Contig-U09720-1Q) /CSM_Contig/Contig-U09720-1Q.Seq.d
         (1333 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_2(AC116551|pid:none) Dictyostelium discoideum chromosom...   376   e-102
AL163972_22(AL163972|pid:none) Arabidopsis thaliana DNA chromoso...    70   2e-10
CR382128_325(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    64   1e-08
CP001331_378(CP001331|pid:none) Micromonas sp. RCC299 chromosome...    61   1e-07
FN392319_933(FN392319|pid:none) Pichia pastoris GS115 chromosome...    55   4e-06
AK243108_1(AK243108|pid:none) Oryza sativa Japonica Group cDNA, ...    55   7e-06
BT062581_1(BT062581|pid:none) Zea mays full-length cDNA clone ZM...    54   2e-05
CR954208_220(CR954208|pid:none) Ostreococcus tauri strain OTTH05...    53   2e-05
AK290495_1(AK290495|pid:none) Homo sapiens cDNA FLJ75642 complet...    50   2e-04
CP001325_355(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    49   3e-04
AK243615_1(AK243615|pid:none) Oryza sativa Japonica Group cDNA, ...    48   0.001
AK075597_1(AK075597|pid:none) Mus musculus adult male kidney cDN...    47   0.002
CU928173_156(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    45   0.004
AE016818_122(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    45   0.008
BT064084_1(BT064084|pid:none) Zea mays full-length cDNA clone ZM...    44   0.010
BC140545_1(BC140545|pid:none) Bos taurus SET domain containing 6...    44   0.013
CR382125_12(CR382125|pid:none) Kluyveromyces lactis strain NRRL ...    44   0.017
FN392320_550(FN392320|pid:none) Pichia pastoris GS115 chromosome...    44   0.017
AF071544_1(AF071544|pid:none) Spinacia oleracea ribulose-1,5-bis...    43   0.022
AF071543_1(AF071543|pid:none) Spinacia oleracea ribulose-1,5-bis...    43   0.022
AE016814_381(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    42   0.038
CP000591_109(CP000591|pid:none) Ostreococcus lucimarinus CCE9901...    42   0.050
(Q12504) RecName: Full=Ribosomal N-lysine methyltransferase 4;  ...    42   0.050
CR954216_226(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    42   0.050
Z46237_1(Z46237|pid:none) Saccharomyces cerevisiae RMS1 gene for...    42   0.050
CR380959_385(CR380959|pid:none) Candida glabrata strain CBS138 c...    41   0.11
AE014298_1015(AE014298|pid:none) Drosophila melanogaster chromos...    41   0.11
CR382137_550(CR382137|pid:none) Debaryomyces hansenii strain CBS...    41   0.11
CR954214_23(CR954214|pid:none) Ostreococcus tauri strain OTTH059...    40   0.19
BA000016_1716(BA000016|pid:none) Clostridium perfringens str. 13...    40   0.25
CU928173_235(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    40   0.25
FM992692_297(FM992692|pid:none) Candida dubliniensis CD36 chromo...    40   0.25
(Q6INM2) RecName: Full=SET domain-containing protein 6;  &BC0722...    39   0.32
AL844509_580(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.42
CU928169_89(CU928169|pid:none) Kluyveromyces thermotolerans stra...    39   0.42
AF058800_1(AF058800|pid:none) Arabidopsis thaliana putative meth...    39   0.55
CR954211_118(CR954211|pid:none) Ostreococcus tauri strain OTTH05...    39   0.55
AL132970_8(AL132970|pid:none) Arabidopsis thaliana DNA chromosom...    38   0.94
BT020257_1(BT020257|pid:none) Arabidopsis thaliana At3g55080 gen...    38   0.94
AC068197_25(AC068197|pid:none) Genomic sequence for Arabidopsis ...    38   0.94
(Q9XI84) RecName: Full=Probable ribulose-1,5 bisphosphate carbox...    38   0.94
CU928179_305(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    38   0.94
AL844505_260(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.94
AY085096_1(AY085096|pid:none) Arabidopsis thaliana clone 12942 m...    37   1.2
AC138464_10(AC138464|pid:none) Medicago truncatula clone mth2-29...    37   1.2
CR380952_222(CR380952|pid:none) Candida glabrata strain CBS138 c...    37   1.2
CP000679_97(CP000679|pid:none) Caldicellulosiruptor saccharolyti...    37   1.2
CP001334_98(CP001334|pid:none) Micromonas sp. RCC299 chromosome ...    37   1.6
CP000246_1928(CP000246|pid:none) Clostridium perfringens ATCC 13...    37   1.6
AM270079_7(AM270079|pid:none) Aspergillus niger contig An04c0180...    37   2.1
AC024859_2(AC024859|pid:none) Caenorhabditis elegans cosmid Y71H...    37   2.1
(Q9P6L2) RecName: Full=SET domain-containing protein C688.14;  &...    37   2.1
BC135640_1(BC135640|pid:none) Xenopus tropicalis hypothetical pr...    37   2.1
BC155278_1(BC155278|pid:none) Danio rerio SET domain containing ...    37   2.1
AJ720687_1(AJ720687|pid:none) Gallus gallus mRNA for hypothetica...    37   2.1
CU928175_556(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    37   2.1
BC055261_1(BC055261|pid:none) Danio rerio SET domain containing ...    37   2.1
AM270333_14(AM270333|pid:none) Aspergillus niger contig An15c006...    36   2.7
BX005416_4(BX005416|pid:none) Zebrafish DNA sequence from clone ...    36   2.7
CP000595_179(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...    36   2.7
(Q1MQ71) RecName: Full=2',3'-cyclic-nucleotide 2'-phosphodiester...    36   2.7
CR382132_1165(CR382132|pid:none) Yarrowia lipolytica strain CLIB...    36   2.7
CU928180_670(CU928180|pid:none) Kluyveromyces thermotolerans str...    36   2.7
AK176519_1(AK176519|pid:none) Arabidopsis thaliana mRNA, complet...    36   2.7
AL672016_4(AL672016|pid:none) Zebrafish DNA sequence from clone ...    36   2.7
(Q38VS6) RecName: Full=Dephospho-CoA kinase;          EC=2.7.1.2...    36   2.7
(P58467) RecName: Full=SET domain-containing protein 4;  &AY0378...    36   3.6
AP008214_600(AP008214|pid:none) Oryza sativa (japonica cultivar-...    35   4.6
(Q03942) RecName: Full=Ribosomal N-lysine methyltransferase 2;  ...    35   4.6
BC036556_1(BC036556|pid:none) Homo sapiens SET domain containing...    35   4.6
(Q6NQJ8) RecName: Full=Protein SET DOMAIN GROUP 40;  &AK175921_1...    35   4.6
AJ489165_1(AJ489165|pid:none) Plasmodium yoelii yoelii partial m...    35   6.1
CR954211_269(CR954211|pid:none) Ostreococcus tauri strain OTTH05...    35   6.1
CP000583_447(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    35   6.1
AJ489163_1(AJ489163|pid:none) Plasmodium yoelii yoelii partial m...    35   6.1
(Q803K4) RecName: Full=SET domain-containing protein 6;  &BC0444...    35   6.1
AB209996_1(AB209996|pid:none) Homo sapiens mRNA for CENPE varian...    35   7.9
EF489082_1(EF489082|pid:none) Haplophyllum glaberrimum voucher F...    35   7.9
S28261(S28261) centromere protein E - human  &Z15005_1(Z15005|pi...    35   7.9
AY811444_1(AY811444|pid:none) Schistosoma japonicum SJCHGC02590 ...    35   7.9
AK290362_1(AK290362|pid:none) Homo sapiens cDNA FLJ77048 partial...    35   7.9
FN357878_10(FN357878|pid:none) Schistosoma mansoni genome sequen...    35   7.9
CP000591_256(CP000591|pid:none) Ostreococcus lucimarinus CCE9901...    35   7.9

>AC116551_2(AC116551|pid:none) Dictyostelium discoideum chromosome 2
            map complement(581327-427576) strain AX4, complete
            sequence.
          Length = 526

 Score =  376 bits (965), Expect = e-102
 Identities = 190/191 (99%), Positives = 190/191 (99%)
 Frame = +2

Query: 707  HLYIKVVKGVEANKEVYNTYGDHDNAILLSKYGFLEMDNPCDRLSIDKQLVDKELELIGA 886
            HLYIKVVKGVEANKEVYNTYGDHDNAILLSKYGFLEMDNPCDRLSIDKQLVDKELELIGA
Sbjct: 317  HLYIKVVKGVEANKEVYNTYGDHDNAILLSKYGFLEMDNPCDRLSIDKQLVDKELELIGA 376

Query: 887  ENQITRMDLFNRISFYAEMFDIDSRNNHAIENDGRLDDALVCSVGIALAPQSIFQSWKSM 1066
            ENQITRMDLFNRISFYAEMFDIDSRNNHAIENDGRLDDALVCSVGIALAPQSIFQSWKSM
Sbjct: 377  ENQITRMDLFNRISFYAEMFDIDSRNNHAIENDGRLDDALVCSVGIALAPQSIFQSWKSM 436

Query: 1067 SEHKREKYFEQLEAEDIVKQSQLVRNTLLSILNKLFSNYNNSNETTATTTIGQDQEKLST 1246
            SEHKREKYFEQLEAEDIVKQSQLVRNTLLSILNKLFSNYNNSNETTATTTI QDQEKLST
Sbjct: 437  SEHKREKYFEQLEAEDIVKQSQLVRNTLLSILNKLFSNYNNSNETTATTTIEQDQEKLST 496

Query: 1247 LKNQREIIAQS 1279
            LKNQREIIAQS
Sbjct: 497  LKNQREIIAQS 507

 Score =  306 bits (783), Expect = 1e-81
 Identities = 163/200 (81%), Positives = 163/200 (81%)
 Frame = +2

Query: 32  MNNQVKPTLSNKAEIINKWLIDNGVRINNKLIKIVYLGKXXXXXXXXXXXXXXXASERIN 211
           MNNQVKPTLSNKAEIINKWLIDNGVRINNKLIKIVYLGK                SERIN
Sbjct: 1   MNNQVKPTLSNKAEIINKWLIDNGVRINNKLIKIVYLGKENNFEQTENTTATTTTSERIN 60

Query: 212 DSIVSGLGVISLKELKVDDIVAKIPKXXXXXXXXXXXXXXLEKYKIENNIGTSIALIHEA 391
           DSIVSGLGVISLKELKVDDIVAKIPK              LEKYKIENNIGTSIALIHEA
Sbjct: 61  DSIVSGLGVISLKELKVDDIVAKIPKSIILSIHTSSISNILEKYKIENNIGTSIALIHEA 120

Query: 392 SLGEKSKWYGYISSLPRKVDVPILWDSESRKLLKGTAIEDVLNGDDILINQVYAXVIESI 571
           SLGEKSKWYGYISSLPRKVDVPILWDSESRKLLKGTAIEDVLN DDILINQVYA VIESI
Sbjct: 121 SLGEKSKWYGYISSLPRKVDVPILWDSESRKLLKGTAIEDVLNDDDILINQVYADVIESI 180

Query: 572 LSKNHXXIFGDKELXXXENF 631
           LSKNH  IFGDKEL   ENF
Sbjct: 181 LSKNHPEIFGDKELYSIENF 200

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,410,968,135
Number of extensions: 26211473
Number of successful extensions: 73550
Number of sequences better than 10.0: 83
Number of HSP's gapped: 73445
Number of HSP's successfully gapped: 94
Length of query: 444
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 312
Effective length of database: 618,001,159
Effective search space: 192816361608
Effective search space used: 192816361608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.59  gvh: 0.13  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U09720-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0