Contig-U09714-1
Contig ID Contig-U09714-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09714-1 (Contig-U09714-1Q) /CSM_Contig/Contig-U09714-1Q.Seq.d
CACTGTTGGCCTACTGGAAAAAAATATTTTTTTTCTAAAAAATTATTTAT
AACTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTTATTTTATTTATTTATTTATTTT
ATTTATTAATTTAAATTTTGTACTATATATAAAAAAAGATCGACCGAGTT
TAGAAAAAAAAAA----------ACACTCAATGATTTGGCTAGATTCCAT
TCAAATGATATGGCAACATATCCATGTTTCAGTCATAATTCATGTGATGG
AACTGATATTTGGAAACGTTTCAATTCATTTATTACATGTTCAAATGCTG
GTTCAAGATCAGAGAATATCGCAGCTGGTTATTCTTCGGGAATACAAACT
AATAATCAATTACTTTGTGATAAAGTCGGCAGTATTTGTGCCACTGATGC
AAGTGATAATGATGGACATAGAGTGAATATCATGTCAAAATCAACTAGTA
ATCTTGGTGTTGGTCATGTTTATGTAAAAGGTTCAACCTATGGCTCATAT
TGGACTCAAGATTTTACAAGTGGTTCATGTTCATTACCAGATACTCCAAT
CTATTCAGCTTATCATACTTTCCCAAGTGGCACTAAACCACAATTCATTG
CAATTTACTATAACCAAACTATGCCTGCCGATTCAATCGAATTAGTATTT
GTTGATGGTGATTCAATTGATATGACTTTAACCTATGGTTCAAGTACTGC
TGGTGCTTACATGACAACTACCGATTTTAATTATTGTGCTCAATATTACT
TTGATATTAAAACTGAATCAGGTGAAACTTATCGTT

Gap gap included
Contig length 826
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1386531
End point 1385723
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U09714
List of clone(s)

est1=VFL187F,1,213
est2=VFM587F,113,213
est3=FC-IC0059F,214,379
est4=VFL187Z,263,728
est5=VFM587Z,301,827
Translated Amino Acid sequence
tvglleknifflknyl*LIYLFIYLFIYLFIYLFIYLFIYLFYFIYLFILFINLNFVLYI
KKDRPSLEKK---

---TLNDLARFHSNDMATYPCFSHNSCDGTDIWKRFNSFITCSNAGSRSENIAAGYSSGI
QTNNQLLCDKVGSICATDASDNDGHRVNIMSKSTSNLGVGHVYVKGSTYGSYWTQDFTSG
SCSLPDTPIYSAYHTFPSGTKPQFIAIYYNQTMPADSIELVFVDGDSIDMTLTYGSSTAG
AYMTTTDFNYCAQYYFDIKTESGETYR


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgkkyffskklfitylfiylfiylfiylfiylfiylfilfylfiyfiy*fkfctiy
kkrstefrkkk---

---TLNDLARFHSNDMATYPCFSHNSCDGTDIWKRFNSFITCSNAGSRSENIAAGYSSGI
QTNNQLLCDKVGSICATDASDNDGHRVNIMSKSTSNLGVGHVYVKGSTYGSYWTQDFTSG
SCSLPDTPIYSAYHTFPSGTKPQFIAIYYNQTMPADSIELVFVDGDSIDMTLTYGSSTAG
AYMTTTDFNYCAQYYFDIKTESGETYR

Frame B:
tvglleknifflknyl*LIYLFIYLFIYLFIYLFIYLFIYLFYFIYLFILFINLNFVLYI
KKDRPSLEKK---

---hsmiwldsiqmiwqhihvsviihvmelifgnvsihllhvqmlvqdqrisqlvilrey
kliinyfviksavfvplmqvimmdie*iscqnqlvilvlvmfm*kvqpmahiglkilqvv
hvhyqilqsiqliilsqvalnhnslqftitklclpiqsn*yllmviqli*l*pmvqvllv
lt*qlpiliivlnitlilklnqvkliv

Frame C:
llaywkkifff*kiiynlfiylfiylfiylfiylfiylfiyfilfiylfylli*ilyyi*
kkidrv*kkk---

---tq*fg*ipfk*ygnismfqs*fm*wn*yletfqfiyymfkcwfkireyrswlffgnt
n**sitl**srqylch*ck***wt*seyhvkin**swcwsclckrfnlwlildsrfykwf
mfitrysnlfslsyfpkwh*ttihcnll*pnyacrfnrisic*w*fn*ydfnlwfkycwc
lhdnyrf*llcsill*y*n*ir*nls

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09714-1 (Contig-U09714-1Q)
/CSM_Contig/Contig-U09714-1Q.Seq.d
(836 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09714-1 (Contig-U09714-1Q) /CSM_Contig/Conti... 1215 0.0
Contig-U13706-1 (Contig-U13706-1Q) /CSM_Contig/Conti... 50 4e-06
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U10778-1 (Contig-U10778-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U08743-1 (Contig-U08743-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U13830-1 (Contig-U13830-1Q) /CSM_Contig/Conti... 46 6e-05
Contig-U12287-1 (Contig-U12287-1Q) /CSM_Contig/Conti... 46 6e-05
Contig-U11669-1 (Contig-U11669-1Q) /CSM_Contig/Conti... 46 6e-05
Contig-U13927-1 (Contig-U13927-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U09640-1 (Contig-U09640-1Q) /CSM_Contig/Conti... 44 2e-04

>Contig-U09714-1 (Contig-U09714-1Q) /CSM_Contig/Contig-U09714-1Q.Seq.d
Length = 836

Score = 1215 bits (613), Expect = 0.0
Identities = 613/613 (100%)
Strand = Plus / Plus


Query: 224 acactcaatgatttggctagattccattcaaatgatatggcaacatatccatgtttcagt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 acactcaatgatttggctagattccattcaaatgatatggcaacatatccatgtttcagt 283


Query: 284 cataattcatgtgatggaactgatatttggaaacgtttcaattcatttattacatgttca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cataattcatgtgatggaactgatatttggaaacgtttcaattcatttattacatgttca 343


Query: 344 aatgctggttcaagatcagagaatatcgcagctggttattcttcgggaatacaaactaat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aatgctggttcaagatcagagaatatcgcagctggttattcttcgggaatacaaactaat 403


Query: 404 aatcaattactttgtgataaagtcggcagtatttgtgccactgatgcaagtgataatgat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatcaattactttgtgataaagtcggcagtatttgtgccactgatgcaagtgataatgat 463


Query: 464 ggacatagagtgaatatcatgtcaaaatcaactagtaatcttggtgttggtcatgtttat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggacatagagtgaatatcatgtcaaaatcaactagtaatcttggtgttggtcatgtttat 523


Query: 524 gtaaaaggttcaacctatggctcatattggactcaagattttacaagtggttcatgttca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtaaaaggttcaacctatggctcatattggactcaagattttacaagtggttcatgttca 583


Query: 584 ttaccagatactccaatctattcagcttatcatactttcccaagtggcactaaaccacaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttaccagatactccaatctattcagcttatcatactttcccaagtggcactaaaccacaa 643


Query: 644 ttcattgcaatttactataaccaaactatgcctgccgattcaatcgaattagtatttgtt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttcattgcaatttactataaccaaactatgcctgccgattcaatcgaattagtatttgtt 703


Query: 704 gatggtgattcaattgatatgactttaacctatggttcaagtactgctggtgcttacatg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gatggtgattcaattgatatgactttaacctatggttcaagtactgctggtgcttacatg 763


Query: 764 acaactaccgattttaattattgtgctcaatattactttgatattaaaactgaatcaggt 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 acaactaccgattttaattattgtgctcaatattactttgatattaaaactgaatcaggt 823


Query: 824 gaaacttatcgtt 836
|||||||||||||
Sbjct: 824 gaaacttatcgtt 836


Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 170 gtactatatataaaaaaagatcgaccgagtttag 203
||||||||||||||||||||||||||||||||||
Sbjct: 170 gtactatatataaaaaaagatcgaccgagtttag 203


Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggaaaaaaata 26
||||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggaaaaaaata 26


>Contig-U13706-1 (Contig-U13706-1Q) /CSM_Contig/Contig-U13706-1Q.Seq.d
Length = 1256

Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggaaaaaaat 25
|||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggaaaaaaat 25


>Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Contig-U11472-1Q.Seq.d
Length = 3643

Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 2 actgttggcctactggaaaaaaat 25
||||||||||||||||||||||||
Sbjct: 1964 actgttggcctactggaaaaaaat 1987


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7746
Number of Sequences: 6905
Number of extensions: 7746
Number of successful extensions: 1279
Number of sequences better than 10.0: 525
length of query: 836
length of database: 5,674,871
effective HSP length: 16
effective length of query: 820
effective length of database: 5,564,391
effective search space: 4562800620
effective search space used: 4562800620
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.17
Homology vs DNA
Query= Contig-U09714-1 (Contig-U09714-1Q) /CSM_Contig/Contig-U09714-1Q.Seq.d
(836 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ435370) Dictyostelium discoideum cDNA clone:ddv26m21, 3' ... 1037 0.0 1
(BJ434112) Dictyostelium discoideum cDNA clone:ddv23m21, 3' ... 918 0.0 1
(AU271323) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 329 1e-85 1
(BJ415840) Dictyostelium discoideum cDNA clone:ddv23m21, 5' ... 68 2e-10 2
(BJ416596) Dictyostelium discoideum cDNA clone:ddv26m21, 5' ... 68 6e-07 1
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 48 1e-04 2
(BJ402793) Dictyostelium discoideum cDNA clone:dds18e09, 3' ... 48 1e-04 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 54 0.009 1
(CU862020) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.45 3
(AC175104) Bos taurus clone CH240-458O3, WORKING DRAFT SEQUE... 48 0.54 1
(CJ484369) Macaca fascicularis mRNA, clone: QtsA-11908, 5' e... 36 1.4 2
(CJ455746) Macaca fascicularis mRNA, clone: QflA-21551, 5' e... 36 1.5 2
(CJ453232) Macaca fascicularis mRNA, clone: QflA-18923, 5' e... 36 1.5 2
(CJ471715) Macaca fascicularis mRNA, clone: QorA-11421, 5' e... 36 1.5 2
(CJ489257) Macaca fascicularis mRNA, clone: QtsA-17002, 5' e... 36 1.6 2
(AC133756) Rattus norvegicus clone CH230-7K2, *** SEQUENCING... 46 2.1 1
(AC103234) Rattus norvegicus clone CH230-6K5, WORKING DRAFT ... 46 2.1 1
(AC191178) Cavia porcellus clone CH234-163F3, WORKING DRAFT ... 46 2.1 1
(AC190070) Cavia porcellus clone CH234-362C19, WORKING DRAFT... 46 2.1 1
(BZ172577) CH230-464O10.TV CHORI-230 Segment 2 Rattus norveg... 46 2.1 1
(EC771717) EST 8213 Guarana fruits cDNA library Paullinia cu... 46 2.1 1
(BJ394045) Dictyostelium discoideum cDNA clone:dds33h14, 5' ... 32 3.7 3
(AC218842) Bos taurus clone CH240-292D3, WORKING DRAFT SEQUE... 42 4.0 2
(CJ450762) Macaca fascicularis mRNA, clone: QflA-16340, 5' e... 34 5.6 2
(CJ488231) Macaca fascicularis mRNA, clone: QtsA-15932, 5' e... 34 5.7 2
(CJ455052) Macaca fascicularis mRNA, clone: QflA-20820, 5' e... 34 7.6 3
(AL671853) Mouse DNA sequence from clone RP23-275N2 on chrom... 44 8.4 1
(AM483130) Vitis vinifera contig VV78X176419.8, whole genome... 44 8.4 1
(AM476679) Vitis vinifera contig VV78X097503.10, whole genom... 44 8.4 1
(AM455065) Vitis vinifera contig VV78X178652.7, whole genome... 44 8.4 1
(AC158223) Mus musculus chromosome 7 clone RP23-182F4 map 7,... 44 8.4 1
(AC218390) Bos taurus clone CH240-285E24, WORKING DRAFT SEQU... 44 8.4 1
(AC016365) Mus musculus clone RP23-450A18, WORKING DRAFT SEQ... 44 8.4 1
(DX365566) 3B_007_P01_RM1 Triticum aestivum chromosome 3B-sp... 44 8.4 1
(AG325871) Mus musculus molossinus DNA, clone:MSMg01-113N09.... 44 8.4 1
(EL353269) CCEL9902.b1_L04.ab1 CCE(LMS) endive Cichorium end... 44 8.4 1
(DN807281) 76961700 Sea Urchin primary mesenchyme cell cDNA ... 44 8.4 1
(CP000653) Enterobacter sp. 638, complete genome. 44 8.4 1

>(BJ435370) Dictyostelium discoideum cDNA clone:ddv26m21, 3' end,
single read.
Length = 527

Score = 1037 bits (523), Expect = 0.0
Identities = 525/526 (99%)
Strand = Plus / Minus


Query: 311 tggaaacgtttcaattcatttattacatgttcaaatgctggttcaagatcagagaatatc 370
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 527 tggaaacgtttcaattcatttattacatgttcaaatgntggttcaagatcagagaatatc 468


Query: 371 gcagctggttattcttcgggaatacaaactaataatcaattactttgtgataaagtcggc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gcagctggttattcttcgggaatacaaactaataatcaattactttgtgataaagtcggc 408


Query: 431 agtatttgtgccactgatgcaagtgataatgatggacatagagtgaatatcatgtcaaaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agtatttgtgccactgatgcaagtgataatgatggacatagagtgaatatcatgtcaaaa 348


Query: 491 tcaactagtaatcttggtgttggtcatgtttatgtaaaaggttcaacctatggctcatat 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tcaactagtaatcttggtgttggtcatgtttatgtaaaaggttcaacctatggctcatat 288


Query: 551 tggactcaagattttacaagtggttcatgttcattaccagatactccaatctattcagct 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tggactcaagattttacaagtggttcatgttcattaccagatactccaatctattcagct 228


Query: 611 tatcatactttcccaagtggcactaaaccacaattcattgcaatttactataaccaaact 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tatcatactttcccaagtggcactaaaccacaattcattgcaatttactataaccaaact 168


Query: 671 atgcctgccgattcaatcgaattagtatttgttgatggtgattcaattgatatgacttta 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 atgcctgccgattcaatcgaattagtatttgttgatggtgattcaattgatatgacttta 108


Query: 731 acctatggttcaagtactgctggtgcttacatgacaactaccgattttaattattgtgct 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 acctatggttcaagtactgctggtgcttacatgacaactaccgattttaattattgtgct 48


Query: 791 caatattactttgatattaaaactgaatcaggtgaaacttatcgtt 836
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 caatattactttgatattaaaactgaatcaggtgaaacttatcgtt 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 693,500,508
Number of extensions: 37907162
Number of successful extensions: 2876415
Number of sequences better than 10.0: 39
Length of query: 836
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 812
Effective length of database: 97,308,875,965
Effective search space: 79014807283580
Effective search space used: 79014807283580
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09714-1 (Contig-U09714-1Q) /CSM_Contig/Contig-U09714-1Q.Seq.d
(836 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116984_121(AC116984|pid:none) Dictyostelium discoideum chromos... 194 3e-48
AC116977_33(AC116977|pid:none) Dictyostelium discoideum chromoso... 73 1e-11
CP000113_5814(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 64 5e-09
AE000513_1519(AE000513|pid:none) Deinococcus radiodurans R1 chro... 64 8e-09
CP000804_162(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 60 9e-08
AM746676_1579(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 59 1e-07
CP001114_436(CP001114|pid:none) Deinococcus deserti VCD115, comp... 57 6e-07
CP000875_268(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2... 56 1e-06
CP000885_441(CP000885|pid:none) Clostridium phytofermentans ISDg... 56 1e-06
CP000820_217(CP000820|pid:none) Frankia sp. EAN1pec, complete ge... 56 1e-06
CP000686_4479(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 55 2e-06
AM295250_972(AM295250|pid:none) Staphylococcus carnosus subsp. c... 55 2e-06
CP000249_4313(CP000249|pid:none) Frankia sp. CcI3, complete geno... 55 3e-06
CT573213_6493(CT573213|pid:none) Frankia alni str. ACN14A chromo... 54 8e-06
CP000853_293(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ... 52 2e-05
CP000686_3071(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 52 2e-05
AP008934_1419(AP008934|pid:none) Staphylococcus saprophyticus su... 52 2e-05
CP000860_51(CP000860|pid:none) Candidatus Desulforudis audaxviat... 52 3e-05
BA000016_832(BA000016|pid:none) Clostridium perfringens str. 13 ... 51 5e-05
CP000155_2888(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 51 5e-05
CP000246_803(CP000246|pid:none) Clostridium perfringens ATCC 131... 50 7e-05
CP000555_3556(CP000555|pid:none) Methylibium petroleiphilum PM1,... 50 7e-05
CP000312_790(CP000312|pid:none) Clostridium perfringens SM101, c... 49 2e-04
AE015927_2112(AE015927|pid:none) Clostridium tetani E88, complet... 49 3e-04
CP000764_966(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 49 3e-04
CP000820_1267(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 49 3e-04
CP000962_2068(CP000962|pid:none) Clostridium botulinum A3 str. L... 48 4e-04
BA000030_2666(BA000030|pid:none) Streptomyces avermitilis MA-468... 48 4e-04
CP000813_1271(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 47 6e-04
CP000083_1646(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 47 6e-04
CP000817_1956(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 47 6e-04
CP000249_2938(CP000249|pid:none) Frankia sp. CcI3, complete geno... 47 6e-04
AM420293_3052(AM420293|pid:none) Saccharopolyspora erythraea NRR... 47 8e-04
CP000568_296(CP000568|pid:none) Clostridium thermocellum ATCC 27... 47 0.001
AL939131_43(AL939131|pid:none) Streptomyces coelicolor A3(2) com... 47 0.001
CP000155_2881(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 46 0.002
AE017333_1515(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 45 0.002
CP000721_2799(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 45 0.003
CP000232_1666(CP000232|pid:none) Moorella thermoacetica ATCC 390... 44 0.005
CP000721_3906(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 44 0.008
AE017355_1161(AE017355|pid:none) Bacillus thuringiensis serovar ... 43 0.011
AE017194_1400(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 43 0.011
AE016877_1168(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 43 0.011
CP000001_1168(CP000001|pid:none) Bacillus cereus E33L, complete ... 43 0.011
CP000250_2731(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 43 0.011
AL939124_82(AL939124|pid:none) Streptomyces coelicolor A3(2) com... 43 0.011
CP000903_1188(CP000903|pid:none) Bacillus weihenstephanensis KBA... 43 0.014
CP000843_12(CP000843|pid:none) Acaryochloris marina MBIC11017 pl... 43 0.014
CP001056_2276(CP001056|pid:none) Clostridium botulinum B str. Ek... 43 0.014
AM180355_1494(AM180355|pid:none) Clostridium difficile 630 compl... 42 0.025
AM420293_1026(AM420293|pid:none) Saccharopolyspora erythraea NRR... 42 0.025
AM180355_2753(AM180355|pid:none) Clostridium difficile 630 compl... 42 0.025
BA000033_1225(BA000033|pid:none) Staphylococcus aureus subsp. au... 42 0.025
AE017226_817(AE017226|pid:none) Treponema denticola ATCC 35405, ... 42 0.032
AP009324_1328(AP009324|pid:none) Staphylococcus aureus subsp. au... 42 0.032
CP000703_1379(CP000703|pid:none) Staphylococcus aureus subsp. au... 42 0.032
AP008955_4876(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 42 0.032
CP000612_79(CP000612|pid:none) Desulfotomaculum reducens MI-1, c... 41 0.042
CP000777_204(CP000777|pid:none) Leptospira biflexa serovar Patoc... 41 0.042
CP000679_1092(CP000679|pid:none) Caldicellulosiruptor saccharoly... 41 0.042
CP001106_502(CP001106|pid:none) Eubacterium eligens ATCC 27750 p... 41 0.042
C69870(C69870) conserved hypothetical protein ykwD - Bacillus su... 40 0.094
CP001390_3184(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 40 0.094
AJ222587_2(AJ222587|pid:none) Bacillus subtilis 29kB DNA fragmen... 40 0.094
BX571856_1319(BX571856|pid:none) Staphylococcus aureus subsp. au... 40 0.094
CP000903_3664(CP000903|pid:none) Bacillus weihenstephanensis KBA... 40 0.094
CP000875_4775(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 40 0.12
AM238664_611(AM238664|pid:none) Streptomyces ambofaciens ATCC 23... 40 0.12
CP000359_1544(CP000359|pid:none) Deinococcus geothermalis DSM 11... 40 0.12
BX950229_1438(BX950229|pid:none) Methanococcus maripaludis strai... 39 0.16
CP000724_3262(CP000724|pid:none) Alkaliphilus metalliredigens QY... 39 0.16
AP008955_3076(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 39 0.16
CP000930_1706(CP000930|pid:none) Heliobacterium modesticaldum Ic... 39 0.21
AE017262_2067(AE017262|pid:none) Listeria monocytogenes str. 4b ... 39 0.27
CP000764_2498(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 39 0.27
AM263198_2076(AM263198|pid:none) Listeria welshimeri serovar 6b ... 39 0.27
FM242711_2046(FM242711|pid:none) Listeria monocytogenes Clip8145... 39 0.27
CR555306_4073(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 39 0.27
CP001175_494(CP001175|pid:none) Listeria monocytogenes HCC23, co... 39 0.27
BX572602_75(BX572602|pid:none) Rhodopseudomonas palustris CGA009... 39 0.27
AL939106_1(AL939106|pid:none) Streptomyces coelicolor A3(2) comp... 38 0.36
CP000850_4489(CP000850|pid:none) Salinispora arenicola CNS-205, ... 38 0.36
AH1331(AH1331) hypothetical protein lmo2056 [imported] - Listeri... 38 0.36
BA000039_1410(BA000039|pid:none) Thermosynechococcus elongatus B... 38 0.36
AE001437_2200(AE001437|pid:none) Clostridium acetobutylicum ATCC... 37 0.61
CP001176_3882(CP001176|pid:none) Bacillus cereus B4264, complete... 37 0.79
CP001186_3952(CP001186|pid:none) Bacillus cereus G9842, complete... 37 0.79
CU468230_862(CU468230|pid:none) Acinetobacter baumannii str. SDF... 37 0.79
AE016877_3747(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 37 0.79
CP000667_4185(CP000667|pid:none) Salinispora tropica CNB-440, co... 37 0.79
AP006627_2532(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 37 1.0
CP001196_3333(CP001196|pid:none) Oligotropha carboxidovorans OM5... 37 1.0
AE016879_3813(AE016879|pid:none) Bacillus anthracis str. Ames, c... 37 1.0
AE015927_580(AE015927|pid:none) Clostridium tetani E88, complete... 37 1.0
BA000043_3176(BA000043|pid:none) Geobacillus kaustophilus HTA426... 37 1.0
CP000875_2697(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 37 1.0
CP000001_3659(CP000001|pid:none) Bacillus cereus E33L, complete ... 37 1.0
CP000521_2800(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 36 1.4
A48825(A48825)Notch homolog Motch protein - mouse (fragment) 36 1.4
CP000076_2376(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 36 1.4
CP000728_1656(CP000728|pid:none) Clostridium botulinum F str. La... 36 1.4
CP000140_3247(CP000140|pid:none) Parabacteroides distasonis ATCC... 36 1.4
CP000828_3236(CP000828|pid:none) Acaryochloris marina MBIC11017,... 36 1.4
BA000040_4729(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 36 1.8
CP001172_871(CP001172|pid:none) Acinetobacter baumannii AB307-02... 36 1.8
CP000885_1917(CP000885|pid:none) Clostridium phytofermentans ISD... 36 1.8
BA000043_1091(BA000043|pid:none) Geobacillus kaustophilus HTA426... 35 2.3
CP000850_1151(CP000850|pid:none) Salinispora arenicola CNS-205, ... 35 2.3
AE004091_1141(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 35 2.3
CP000744_4196(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 35 2.3
AF528097_29(AF528097|pid:none) Clostridium tetani E88 plasmid pE... 35 3.0
CP000438_3972(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 35 3.0
CP000745_677(CP000745|pid:none) Methanococcus maripaludis C7, co... 35 3.0
CP000227_3624(CP000227|pid:none) Bacillus cereus Q1, complete ge... 35 3.0
DQ003638_108(DQ003638|pid:none) Listeria phage A511, complete ge... 35 3.0
AE017194_3951(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 35 3.0
CP001034_943(CP001034|pid:none) Natranaerobius thermophilus JW/N... 35 3.9
BA000004_2878(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 35 3.9
CP000319_3446(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 34 5.1
AB209610_1(AB209610|pid:none) Homo sapiens mRNA for PREDICTED: F... 34 5.1
CP000304_1594(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 34 5.1
CP000667_1274(CP000667|pid:none) Salinispora tropica CNB-440, co... 34 5.1
BC094565_1(BC094565|pid:none) Mus musculus F-box protein 10, mRN... 34 6.7
(P06776) RecName: Full=3',5'-cyclic-nucleotide phosphodiesterase... 34 6.7
CP000724_131(CP000724|pid:none) Alkaliphilus metalliredigens QYM... 34 6.7
BC052485_1(BC052485|pid:none) Mus musculus F-box protein 10, mRN... 34 6.7
BC054731_1(BC054731|pid:none) Mus musculus F-box protein 10, mRN... 34 6.7
CP000058_3119(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 33 8.8
CP000265_5(CP000265|pid:none) Jannaschia sp. CCS1 plasmid1, comp... 33 8.8

>AC116984_121(AC116984|pid:none) Dictyostelium discoideum chromosome
2 map 2567470-3108875 strain AX4, complete sequence.
Length = 457

Score = 194 bits (493), Expect = 3e-48
Identities = 102/207 (49%), Positives = 131/207 (63%), Gaps = 3/207 (1%)
Frame = +2

Query: 224 TLNDLARFHSNDMATYPCFSHNSCDGTDIWKRFNSFIT-CSNAG-SRSENIAAGYSSGIQ 397
TL LAR HS++M FSHNS DGT RF+SF+ C +AG S +ENIAAG SGI
Sbjct: 84 TLGYLARSHSSEMGIKGYFSHNSYDGTSWSTRFDSFVAGCQSAGNSIAENIAAGGVSGIG 143

Query: 398 TNNQLLCDKVGSICATDASDNDGHRVNIMSKSTSNLGVGHVYVKGSTYGSYWTQDFTSGS 577
T +QLLCD V +C D S + GHR NIM + +G+G Y S YG+YWTQDF +G
Sbjct: 144 TTSQLLCDAVSGVCVVDTSSDAGHRKNIMG-NYKIVGIGFYYNSSSQYGNYWTQDFDNGI 202

Query: 578 CSLPDTPIYSAYHTFPSGTK-PQFIAIYYNQTMPADSIELVFVDGDSIDMTLTYGSSTAG 754
C LP TPIYS +HTF G P + YY+ T A + +F +G SIDMTL G++ +G
Sbjct: 203 CGLPTTPIYSGFHTFFFGANAPNYYLSYYSSTDAASKVSFIFENGTSIDMTLFGGTANSG 262

Query: 755 AYMTTTDFNYCAQYYFDIKTESGETYR 835
Y T+T + CA+YYF + + SG+TYR
Sbjct: 263 IYTTSTVYQVCAKYYFSVTSASGKTYR 289

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,110,324,603
Number of extensions: 21153236
Number of successful extensions: 51487
Number of sequences better than 10.0: 129
Number of HSP's gapped: 51328
Number of HSP's successfully gapped: 129
Length of query: 278
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 151
Effective length of database: 634,022,584
Effective search space: 95737410184
Effective search space used: 95737410184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.95 gvh: 0.40 alm: 0.20 top: 0.60 tms: 0.13 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

32.0 %: endoplasmic reticulum
16.0 %: vacuolar
16.0 %: plasma membrane
12.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for Contig-U09714-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1