Contig-U09708-1
Contig ID Contig-U09708-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09708-1 (Contig-U09708-1Q) /CSM_Contig/Contig-U09708-1Q.Seq.d
ACACATCACACACACATCACACATCAATATAATGAGTGATTCATCAATTG
TTAACCTTTCAAAAGAAGGAGATTCTAATTTTTCAAGTGCAACAATAAAT
CTTTCAAAAGTTGATGATACAGTAAATGTTTCAAATGCAACTATCAATCT
TTCAAAAGTAACTATTGATCCTTCAAATCAAATGTCTAATCCTTCAAATC
AAGGTATAAACCTTTCAAAGTGTACAAAAGTTGAATTAAGATTTAAATGC
ATGAATTTAAAAGATATGGATACCTTTTCAAAATCAGATCCACAAATCTT
TGTTTATGAAAAAAAAGGTAATAATAATAATAATAATAATTCAAAACCAA
TTCTTATTGGTTCAACAGAAATGATTAGTAATAATTTAAATCCAGTTTTT
AAAAAAACTGTTACAATTGATTACCATTTTGAAAGAATTCAAAATTTAAA
ATTTGAAGTTTTAGATATAGATGGTGGTGGTAAAAATGATACTATTGGTG
ACTTTTCAATAACATTAGGTAATATAATCTCAAAACCAGGTAAAAAAGTA
ATTGGTGAAATTAAATGTAATGGTAAACAAACAGGTACAATTGAAATTAT
TGC----------NNNNNNNNNNTTACATTACAATACACCAACTCATGAA
AGTGAGTATGCAAGATCTATCTTGGCAGTGGGTAATGTTTTAGCCCCATA
TGATTCCGATGGTAAAATTGAATTATTGGGTTTCGGTGCTGAAAGATTCG
GTGGTGTAACAAGCCACTGTTTCCAATTCGGTCCAAAAGCTGAAGCTCGC
GGTATTGAAGAAGTTTTATCAACCTATAATAAAGTTATACCAACTATTAA
ATTAAGTTATCCAACTAACTTTCAAGAGATTATTAAACATGCTCATAAAA
AGTCAATTAAAGGTGTTGATTCTAAAAATCAAAAATATACAATTCTATTA
ATACTTACAGATGGTGAAATCACAGATATGGAAGAAACCATTGAAGAAAT
TGTAAAAGCATCCTCCAAAGCTCCATTATCAATCGTTATCGTTGGTGTTG
GTATTGCTTCTTTTGAACTTATGAAAAAATTAGATGGTGATGAAAATCAA
TTATCTGATAAAAATGGTGTTATTGCTACTCGTGACATTGTTCAATTCGT
ACCATTCAAAAAATATGAAAATGATCCTGAACAATTAGCTGCTGAAACAC
TTTGTGAAATACCTGAACAATTAATTGGTTATAGAAAAGTCAAAATTATT
TCCCAAATATAAAAATTAAAATTAAAAAATTAAAAATAAATTAAAAA

Gap gap included
Contig length 1287
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4175844
End point 4174565
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U09708
List of clone(s)

est1=VFK812F,1,603
est2=SLA852F,7,339
est3=VFK812Z,604,1278
Translated Amino Acid sequence
HITHTSHINIMSDSSIVNLSKEGDSNFSSATINLSKVDDTVNVSNATINLSKVTIDPSNQ
MSNPSNQGINLSKCTKVELRFKCMNLKDMDTFSKSDPQIFVYEKKGNNNNNNNSKPILIG
STEMISNNLNPVFKKTVTIDYHFERIQNLKFEVLDIDGGGKNDTIGDFSITLGNIISKPG
KKVIGEIKCNGKQTGTIEII---

---XXXLHYNTPTHESEYARSILAVGNVLAPYDSDGKIELLGFGAERFGGVTSHCFQFGP
KAEARGIEEVLSTYNKVIPTIKLSYPTNFQEIIKHAHKKSIKGVDSKNQKYTILLILTDG
EITDMEETIEEIVKASSKAPLSIVIVGVGIASFELMKKLDGDENQLSDKNGVIATRDIVQ
FVPFKKYENDPEQLAAETLCEIPEQLIGYRKVKIISQI*klklkn*k*ik


Translated Amino Acid sequence (All Frames)
Frame A:
thhthithqyne*finc*pfkrrrf*ffkcnnksfks**yskcfkcnyqsfksny*sfks
nv*sfksrykpfkvyks*iki*mhefkrygylfkirstnlcl*kkr*******fktnsyw
fnrnd***fkssf*kncyn*lpf*knskfki*sfryrwww*k*yyw*lfnnir*ynlktr
*ksnw*n*m*w*tnryn*nyc---

---xxxxtlqytns*k*vckiylgsg*cfspi*frw*n*iigfrc*kirwcnkplfpirs
ks*ssry*rsfinl**sytny*iklsn*lsrdy*tcs*kvn*rc*f*kskiynsintyrw
*nhrygrnh*rncksilqssiinryrwcwycff*tyekirw**ksii**kwcycys*hcs
irtiqki*k*s*tisc*ntl*nt*tinwl*ksqnyfpnikikikklkin*k

Frame B:
HITHTSHINIMSDSSIVNLSKEGDSNFSSATINLSKVDDTVNVSNATINLSKVTIDPSNQ
MSNPSNQGINLSKCTKVELRFKCMNLKDMDTFSKSDPQIFVYEKKGNNNNNNNSKPILIG
STEMISNNLNPVFKKTVTIDYHFERIQNLKFEVLDIDGGGKNDTIGDFSITLGNIISKPG
KKVIGEIKCNGKQTGTIEII---

---XXXLHYNTPTHESEYARSILAVGNVLAPYDSDGKIELLGFGAERFGGVTSHCFQFGP
KAEARGIEEVLSTYNKVIPTIKLSYPTNFQEIIKHAHKKSIKGVDSKNQKYTILLILTDG
EITDMEETIEEIVKASSKAPLSIVIVGVGIASFELMKKLDGDENQLSDKNGVIATRDIVQ
FVPFKKYENDPEQLAAETLCEIPEQLIGYRKVKIISQI*klklkn*k*ik

Frame C:
tshthhtsi**vihqlltfqkkeilifqvqq*ifqklmiq*mfqmqlsifqk*llilqik
clilqikv*tfqsvqkln*dlna*i*kiwipfqnqihkslfmkkkviiiiiiiqnqfllv
qqk*lvii*iqflkkllqlitilkefki*nlkf*i*mvvvkmillvtfq*h*vi*sqnqv
kk*lvklnvmvnkqvqlkll---

---xxxyitihqlmkvsmqdlswqwvmf*phmipmvklnywvsvlkdsvv*qatvsnsvq
klklavlkkfyqpiiklyqlln*viqltfkrllnmliksqlkvlilkikniqfy*ylqmv
ksqiwkkplkkl*khppklhyqslslvlvllllnl*kn*mvmkinylikmvllllvtlfn
syhsknmkmilnn*llkhfvkylnn*lvieksklfpkykn*n*kiknklk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09708-1 (Contig-U09708-1Q)
/CSM_Contig/Contig-U09708-1Q.Seq.d
(1297 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09708-1 (Contig-U09708-1Q) /CSM_Contig/Conti... 1251 0.0
Contig-U03274-1 (Contig-U03274-1Q) /CSM_Contig/Conti... 68 3e-11
Contig-U09729-1 (Contig-U09729-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U11873-1 (Contig-U11873-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U09633-1 (Contig-U09633-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U09540-1 (Contig-U09540-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U03060-1 (Contig-U03060-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U12701-1 (Contig-U12701-1Q) /CSM_Contig/Conti... 34 0.36

>Contig-U09708-1 (Contig-U09708-1Q) /CSM_Contig/Contig-U09708-1Q.Seq.d
Length = 1297

Score = 1251 bits (631), Expect = 0.0
Identities = 631/631 (100%)
Strand = Plus / Plus


Query: 624 ttacattacaatacaccaactcatgaaagtgagtatgcaagatctatcttggcagtgggt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttacattacaatacaccaactcatgaaagtgagtatgcaagatctatcttggcagtgggt 683


Query: 684 aatgttttagccccatatgattccgatggtaaaattgaattattgggtttcggtgctgaa 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatgttttagccccatatgattccgatggtaaaattgaattattgggtttcggtgctgaa 743


Query: 744 agattcggtggtgtaacaagccactgtttccaattcggtccaaaagctgaagctcgcggt 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agattcggtggtgtaacaagccactgtttccaattcggtccaaaagctgaagctcgcggt 803


Query: 804 attgaagaagttttatcaacctataataaagttataccaactattaaattaagttatcca 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 attgaagaagttttatcaacctataataaagttataccaactattaaattaagttatcca 863


Query: 864 actaactttcaagagattattaaacatgctcataaaaagtcaattaaaggtgttgattct 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 actaactttcaagagattattaaacatgctcataaaaagtcaattaaaggtgttgattct 923


Query: 924 aaaaatcaaaaatatacaattctattaatacttacagatggtgaaatcacagatatggaa 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aaaaatcaaaaatatacaattctattaatacttacagatggtgaaatcacagatatggaa 983


Query: 984 gaaaccattgaagaaattgtaaaagcatcctccaaagctccattatcaatcgttatcgtt 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gaaaccattgaagaaattgtaaaagcatcctccaaagctccattatcaatcgttatcgtt 1043


Query: 1044 ggtgttggtattgcttcttttgaacttatgaaaaaattagatggtgatgaaaatcaatta 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 ggtgttggtattgcttcttttgaacttatgaaaaaattagatggtgatgaaaatcaatta 1103


Query: 1104 tctgataaaaatggtgttattgctactcgtgacattgttcaattcgtaccattcaaaaaa 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 tctgataaaaatggtgttattgctactcgtgacattgttcaattcgtaccattcaaaaaa 1163


Query: 1164 tatgaaaatgatcctgaacaattagctgctgaaacactttgtgaaatacctgaacaatta 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 tatgaaaatgatcctgaacaattagctgctgaaacactttgtgaaatacctgaacaatta 1223


Query: 1224 attggttatagaaaagtcaaaattatttccc 1254
|||||||||||||||||||||||||||||||
Sbjct: 1224 attggttatagaaaagtcaaaattatttccc 1254


Score = 565 bits (285), Expect = e-161
Identities = 285/285 (100%)
Strand = Plus / Plus


Query: 24 tcaatataatgagtgattcatcaattgttaacctttcaaaagaaggagattctaattttt 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 tcaatataatgagtgattcatcaattgttaacctttcaaaagaaggagattctaattttt 83


Query: 84 caagtgcaacaataaatctttcaaaagttgatgatacagtaaatgtttcaaatgcaacta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 caagtgcaacaataaatctttcaaaagttgatgatacagtaaatgtttcaaatgcaacta 143


Query: 144 tcaatctttcaaaagtaactattgatccttcaaatcaaatgtctaatccttcaaatcaag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tcaatctttcaaaagtaactattgatccttcaaatcaaatgtctaatccttcaaatcaag 203


Query: 204 gtataaacctttcaaagtgtacaaaagttgaattaagatttaaatgcatgaatttaaaag 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gtataaacctttcaaagtgtacaaaagttgaattaagatttaaatgcatgaatttaaaag 263


Query: 264 atatggataccttttcaaaatcagatccacaaatctttgtttatg 308
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atatggataccttttcaaaatcagatccacaaatctttgtttatg 308


Score = 480 bits (242), Expect = e-135
Identities = 256/263 (97%)
Strand = Plus / Plus


Query: 341 tcaaaaccaattcttattggttcaacagaaatgattagtaataatttaaatccagttttt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tcaaaaccaattcttattggttcaacagaaatgattagtaataatttaaatccagttttt 400


Query: 401 nnnnnnnctgttacaattgattaccattttgaaagaattcaaaatttaaaatttgaagtt 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaaaaaactgttacaattgattaccattttgaaagaattcaaaatttaaaatttgaagtt 460


Query: 461 ttagatatagatggtggtggtaaaaatgatactattggtgacttttcaataacattaggt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttagatatagatggtggtggtaaaaatgatactattggtgacttttcaataacattaggt 520


Query: 521 aatataatctcaaaaccaggtaaaaaagtaattggtgaaattaaatgtaatggtaaacaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aatataatctcaaaaccaggtaaaaaagtaattggtgaaattaaatgtaatggtaaacaa 580


Query: 581 acaggtacaattgaaattattgc 603
|||||||||||||||||||||||
Sbjct: 581 acaggtacaattgaaattattgc 603


>Contig-U03274-1 (Contig-U03274-1Q) /CSM_Contig/Contig-U03274-1Q.Seq.d
Length = 1655

Score = 67.9 bits (34), Expect = 3e-11
Identities = 85/102 (83%)
Strand = Plus / Plus


Query: 485 aatgatactattggtgacttttcaataacattaggtaatataatctcaaaaccaggtaaa 544
||||||| ||||||| | | | ||| ||||||||||||||| || ||||||||| ||||
Sbjct: 334 aatgatattattggtcaatatacaacaacattaggtaatattatatcaaaaccaaataaa 393


Query: 545 aaagtaattggtgaaattaaatgtaatggtaaacaaacaggt 586
||||| ||| | ||||||||| ||| |||||| ||||||||
Sbjct: 394 aaagttattagcgaaattaaacataaaggtaaagaaacaggt 435


Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus


Query: 1192 ctgaaacactttgtgaaatacctgaacaattaattggtt 1230
||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 1547 ctgaaacacttcgtgaaatacctcaacaattacttggtt 1585


Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus


Query: 1128 actcgtgacattgttcaattcgtaccattcaa 1159
|||||||| || ||||||||||||||||||||
Sbjct: 1483 actcgtgatatcgttcaattcgtaccattcaa 1514


Score = 32.2 bits (16), Expect = 1.4
Identities = 43/52 (82%)
Strand = Plus / Plus


Query: 929 tcaaaaatatacaattctattaatacttacagatggtgaaatcacagatatg 980
|||||||||||| || || ||||| | || |||||||||||| | ||||||
Sbjct: 1281 tcaaaaatatactatactcttaattttaaccgatggtgaaatctctgatatg 1332


Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 380 aataatttaaatccag 395
||||||||||||||||
Sbjct: 208 aataatttaaatccag 223


Score = 30.2 bits (15), Expect = 5.7
Identities = 36/43 (83%)
Strand = Plus / Plus


Query: 696 ccatatgattccgatggtaaaattgaattattgggtttcggtg 738
||||||||||| ||||| || ||||| | |||||||| ||||
Sbjct: 1051 ccatatgattctgatggaaatattgaggtgttgggttttggtg 1093


>Contig-U09729-1 (Contig-U09729-1Q) /CSM_Contig/Contig-U09729-1Q.Seq.d
Length = 1229

Score = 40.1 bits (20), Expect = 0.006
Identities = 32/36 (88%)
Strand = Plus / Plus


Query: 1017 aaagctccattatcaatcgttatcgttggtgttggt 1052
||||| |||||||||||| || || |||||||||||
Sbjct: 970 aaagcaccattatcaatcattttcattggtgttggt 1005


Score = 32.2 bits (16), Expect = 1.4
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 225 caaaagttgaattaagatttaaat 248
||||| ||||||||||||| ||||
Sbjct: 56 caaaaattgaattaagattcaaat 79


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,356
Number of Sequences: 6905
Number of extensions: 20356
Number of successful extensions: 2199
Number of sequences better than 10.0: 236
length of query: 1297
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1281
effective length of database: 5,564,391
effective search space: 7127984871
effective search space used: 7127984871
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.17
Homology vs DNA
Query= Contig-U09708-1 (Contig-U09708-1Q) /CSM_Contig/Contig-U09708-1Q.Seq.d
(1297 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433506) Dictyostelium discoideum cDNA clone:ddv22h04, 3' ... 1211 0.0 1
(BJ415291) Dictyostelium discoideum cDNA clone:ddv22h04, 5' ... 565 0.0 3
(AU060281) Dictyostelium discoideum slug cDNA, clone SLA852. 565 e-156 1
(AY593970) Dictyostelium discoideum copine B (cpnB) mRNA, co... 68 2e-34 8
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 64 1e-17 15
(BJ372952) Dictyostelium discoideum cDNA clone:ddc15i02, 3' ... 54 3e-17 5
(AU036986) Dictyostelium discoideum slug cDNA, clone SSA705. 54 9e-15 4
(BJ359503) Dictyostelium discoideum cDNA clone:ddc15i02, 5' ... 68 3e-10 3
(AU039760) Dictyostelium discoideum slug cDNA, clone SLG357. 48 4e-08 3
(BJ429091) Dictyostelium discoideum cDNA clone:ddv2h08, 3' e... 36 2e-05 4
(FE242688) CAPG7288.rev CAPG Naegleria gruberi amoeba stage ... 46 3e-04 2
(FE268017) CAZO6484.rev CAZO Naegleria gruberi Flagellate St... 46 3e-04 2
(FE232470) CAPG1766.rev CAPG Naegleria gruberi amoeba stage ... 46 3e-04 2
(FE268018) CAZO6484.fwd CAZO Naegleria gruberi Flagellate St... 46 3e-04 2
(FE240698) CAPG5976.rev CAPG Naegleria gruberi amoeba stage ... 46 3e-04 2
(FE236417) CAPG388.rev CAPG Naegleria gruberi amoeba stage N... 46 3e-04 2
(FE233848) CAPG2503.rev CAPG Naegleria gruberi amoeba stage ... 46 0.001 2
(AY332759) Dictyostelium discoideum copine a (cpna) mRNA, co... 40 0.004 3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 0.012 18
(BX950229) Methanococcus maripaludis strain S2, complete seq... 40 0.050 23
(DD307082) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 40 0.11 2
(AM180252) Lawsonia intracellularis PHE/MN1-00. 40 0.11 2
(DD307691) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 40 0.16 2
(AC180277) Strongylocentrotus purpuratus clone R3-3008N13, W... 50 0.21 1
(AC178216) Strongylocentrotus purpuratus clone R3-3085H18, W... 50 0.21 1
(AC176537) Strongylocentrotus purpuratus clone R3-3075M10, W... 50 0.21 1
(AC175839) Strongylocentrotus purpuratus clone R3-15M11, WOR... 50 0.21 1
(AC232006) Solanum tuberosum strain Diploid genotype RH89-03... 46 0.33 7
(AC161402) Medicago truncatula chromosome 2 BAC clone mte1-6... 40 0.43 5
(EA688596) Sequence 67475 from patent US 7365185. 42 0.66 2
(EJ130032) 1092343425368 Global-Ocean-Sampling_GS-27-01-01-1... 34 0.77 3
(AC152148) Dasypus novemcinctus clone VMRC5-401A11, WORKING ... 48 0.84 1
(DV854054) col1314 Colonial bentgrass EST Agrostis capillari... 48 0.84 1
(DN303327) PL05002B2C08 cDNA from sexually mature hermaphodi... 48 0.84 1
(AC093568) Oryza sativa chromosome 10 clone OSJNBa0029P16, c... 36 1.0 6
(AE017308) Mycoplasma mobile 163K complete genome. 36 1.2 21
(EV171450) 0152154 Brassica napus Etiolated seedlings (Uni-Z... 46 1.2 2
(AL132952) Caenorhabditis elegans YAC Y51H4A. 34 1.6 12
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 2.9 18
(CW287335) 104_765_11411361_148_35527_041 Sorghum methylatio... 44 3.0 2
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 36 3.1 22
(AF040648) Caenorhabditis elegans fosmid H19M22, complete se... 46 3.3 1
(AC117956) Rattus norvegicus clone CH230-363J1, *** SEQUENCI... 46 3.3 1
(CU927994) S.lycopersicum DNA sequence *** SEQUENCING IN PRO... 46 3.3 1
(CU607035) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.3 1
(AC189583) Brassica rapa subsp. pekinensis clone KBrH012D09,... 46 3.3 1
(AC006897) Caenorhabditis elegans clone Y71H2Y, *** SEQUENCI... 46 3.3 1
(AC006875) Caenorhabditis elegans clone Y54F10x, *** SEQUENC... 46 3.3 1
(AZ566364) 220PvF07 Pv MBN #16 (amplified twice) Plasmodium ... 46 3.3 1
(CX192024) 47-E013414-021-002-P01Q-SP6r ADIS-MPIZ 021 Brassi... 46 3.3 1
(CX192023) 47-E013336-021-002-P01Q-T7R ADIS-MPIZ 021 Brassic... 46 3.3 1
(CT792645) Paramecium tetraurelia 3-PRIME EST from clone LK0... 46 3.3 1
(FG076975) UI-FF-IF0-abq-o-07-0-UI.r1 Ceratitis capitata emb... 46 3.3 1
(FE234768) CAPG3000.fwd CAPG Naegleria gruberi amoeba stage ... 46 3.3 1
(CP000395) Borrelia afzelii PKo, complete genome. 46 3.3 1
(CP000013) Borrelia garinii PBi, complete genome. 46 3.3 1
(EK037417) 1092959477923 Global-Ocean-Sampling_GS-31-01-01-1... 34 3.4 4
(CZ946438) 296523 Tomato EcoRI BAC Library Solanum lycopersi... 32 3.5 4
(AL513191) Human DNA sequence from clone RP11-224F24 on chro... 34 3.6 7
(CZ957399) 288680 Tomato EcoRI BAC Library Solanum lycopersi... 40 4.0 2
(CR855142) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 4.5 2
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 40 4.7 5
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 36 4.8 8
(DX527487) GH_MBb0047D20r GH_MBb Gossypium hirsutum genomic ... 36 5.6 2
(FK170793) XABT192879.g1 Gateway compatible cien cDNA librar... 34 5.8 3
(AC186911) Microcebus murinus clone CH257-192K7, WORKING DRA... 34 6.1 2
(AC091602) Homo sapiens BAC clone RP11-655M19 from 4, comple... 32 6.1 2
(AC171289) Bos taurus clone CH240-250D2, WORKING DRAFT SEQUE... 34 6.1 2
(AC168144) Bos taurus clone CH240-204B5, WORKING DRAFT SEQUE... 34 6.1 2
(AY484471) Plasmodium berghei TRAP-like protein 1 gene, comp... 32 6.2 4
(AC097480) Homo sapiens BAC clone RP11-123O22 from 4, comple... 32 6.2 2
(AG661582) Macaca fuscata fuscata DNA, clone: MSB2-081N16_F,... 36 6.8 3
(EJ124298) 1092343387139 Global-Ocean-Sampling_GS-27-01-01-1... 32 8.0 3
(EK168908) 1095458065844 Global-Ocean-Sampling_GS-31-01-01-1... 34 8.3 2
(DU039068) 22791 Tomato HindIII BAC Library Solanum lycopers... 34 8.3 2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 9.1 17
(AM453212) Vitis vinifera contig VV78X031497.8, whole genome... 34 9.3 5
(CL207197) ZMMBBb0569N22f ZMMBBb (HindIII) Zea mays subsp. m... 36 9.4 3
(AC083790) Homo sapiens chromosome 8, clone RP11-46B18, comp... 36 9.8 6

>(BJ433506) Dictyostelium discoideum cDNA clone:ddv22h04, 3' end,
single read.
Length = 675

Score = 1211 bits (611), Expect = 0.0
Identities = 611/611 (100%)
Strand = Plus / Minus


Query: 624 ttacattacaatacaccaactcatgaaagtgagtatgcaagatctatcttggcagtgggt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttacattacaatacaccaactcatgaaagtgagtatgcaagatctatcttggcagtgggt 616


Query: 684 aatgttttagccccatatgattccgatggtaaaattgaattattgggtttcggtgctgaa 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aatgttttagccccatatgattccgatggtaaaattgaattattgggtttcggtgctgaa 556


Query: 744 agattcggtggtgtaacaagccactgtttccaattcggtccaaaagctgaagctcgcggt 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agattcggtggtgtaacaagccactgtttccaattcggtccaaaagctgaagctcgcggt 496


Query: 804 attgaagaagttttatcaacctataataaagttataccaactattaaattaagttatcca 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 attgaagaagttttatcaacctataataaagttataccaactattaaattaagttatcca 436


Query: 864 actaactttcaagagattattaaacatgctcataaaaagtcaattaaaggtgttgattct 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 actaactttcaagagattattaaacatgctcataaaaagtcaattaaaggtgttgattct 376


Query: 924 aaaaatcaaaaatatacaattctattaatacttacagatggtgaaatcacagatatggaa 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaaaatcaaaaatatacaattctattaatacttacagatggtgaaatcacagatatggaa 316


Query: 984 gaaaccattgaagaaattgtaaaagcatcctccaaagctccattatcaatcgttatcgtt 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaaaccattgaagaaattgtaaaagcatcctccaaagctccattatcaatcgttatcgtt 256


Query: 1044 ggtgttggtattgcttcttttgaacttatgaaaaaattagatggtgatgaaaatcaatta 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggtgttggtattgcttcttttgaacttatgaaaaaattagatggtgatgaaaatcaatta 196


Query: 1104 tctgataaaaatggtgttattgctactcgtgacattgttcaattcgtaccattcaaaaaa 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tctgataaaaatggtgttattgctactcgtgacattgttcaattcgtaccattcaaaaaa 136


Query: 1164 tatgaaaatgatcctgaacaattagctgctgaaacactttgtgaaatacctgaacaatta 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tatgaaaatgatcctgaacaattagctgctgaaacactttgtgaaatacctgaacaatta 76


Query: 1224 attggttatag 1234
|||||||||||
Sbjct: 75 attggttatag 65

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,497,357,414
Number of extensions: 91227440
Number of successful extensions: 7420082
Number of sequences better than 10.0: 79
Length of query: 1297
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1273
Effective length of database: 97,308,875,965
Effective search space: 123874199103445
Effective search space used: 123874199103445
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09708-1 (Contig-U09708-1Q) /CSM_Contig/Contig-U09708-1Q.Seq.d
(1297 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC136053_1(BC136053|pid:none) Xenopus tropicalis copine V, mRNA ... 116 2e-32
BC123845_1(BC123845|pid:none) Bos taurus copine I, mRNA (cDNA cl... 131 5e-29
AM494965_129(AM494965|pid:none) Leishmania braziliensis chromoso... 130 8e-29
FJ958358_1(FJ958358|pid:none) Ovis aries copine I (CPNE1) mRNA, ... 130 8e-29
AK220288_1(AK220288|pid:none) Mus musculus mRNA for mKIAA0765 sp... 130 1e-28
(Q8C166) RecName: Full=Copine-1; AltName: Full=Copine I; &AK028... 130 1e-28
BC050240_1(BC050240|pid:none) Danio rerio copine I, mRNA (cDNA c... 129 2e-28
FJ436394_1(FJ436394|pid:none) Sus scrofa copine I (CPNE1) mRNA, ... 129 3e-28
BC096510_1(BC096510|pid:none) Xenopus tropicalis hypothetical pr... 128 4e-28
(Q7YXU4) RecName: Full=Copine-A; &AY332759_1(AY332759|pid:none) 128 5e-28
BC151889_1(BC151889|pid:none) Danio rerio copine I, mRNA (cDNA c... 127 7e-28
AL109827_5(AL109827|pid:none) Human DNA sequence from clone RP1-... 127 1e-27
AY891920_1(AY891920|pid:none) Synthetic construct Homo sapiens c... 127 1e-27
(Q99829) RecName: Full=Copine-1; AltName: Full=Copine I; &AL109... 127 1e-27
AB170779_1(AB170779|pid:none) Macaca fascicularis brain cDNA clo... 127 1e-27
BC061671_1(BC061671|pid:none) Xenopus laevis copine III, mRNA (c... 125 3e-27
BC045408_1(BC045408|pid:none) Danio rerio copine III, mRNA (cDNA... 125 3e-27
AK292912_1(AK292912|pid:none) Homo sapiens cDNA FLJ77305 complet... 125 3e-27
BC022128_1(BC022128|pid:none) Mus musculus copine II, mRNA (cDNA... 125 4e-27
AY890887_1(AY890887|pid:none) Synthetic construct Homo sapiens c... 125 4e-27
(O75131) RecName: Full=Copine-3; AltName: Full=Copine III; &AB3... 125 4e-27
(Q8BT60) RecName: Full=Copine-3; AltName: Full=Copine III; &AL6... 125 4e-27
BC142290_1(BC142290|pid:none) Bos taurus copine III, mRNA (cDNA ... 125 4e-27
AK220348_1(AK220348|pid:none) Mus musculus mRNA for mKIAA0636 pr... 125 4e-27
AB014536_1(AB014536|pid:none) Homo sapiens mRNA for KIAA0636 pro... 125 4e-27
AK146324_1(AK146324|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 124 6e-27
AM502246_125(AM502246|pid:none) Leishmania infantum chromosome 28. 124 1e-26
BC080879_1(BC080879|pid:none) Xenopus tropicalis cpne3 protein, ... 123 1e-26
BC054636_1(BC054636|pid:none) Danio rerio zgc:64194, mRNA (cDNA ... 123 2e-26
AB046819_1(AB046819|pid:none) Homo sapiens mRNA for KIAA1599 pro... 123 2e-26
EF676600_1(EF676600|pid:none) Picea sitchensis clone WS02743_P13... 122 3e-26
AB463543_1(AB463543|pid:none) Synthetic construct DNA, clone: pF... 122 3e-26
BC036242_1(BC036242|pid:none) Homo sapiens copine III, mRNA (cDN... 122 3e-26
AY892987_1(AY892987|pid:none) Synthetic construct Homo sapiens c... 122 3e-26
(Q9UBL6) RecName: Full=Copine-7; AltName: Full=Copine VII; &AJ1... 122 3e-26
BC106238_1(BC106238|pid:none) Xenopus laevis hypothetical LOC495... 122 4e-26
BC085079_1(BC085079|pid:none) Xenopus laevis hypothetical LOC495... 122 4e-26
AL928881_1(AL928881|pid:none) Zebrafish DNA sequence from clone ... 121 5e-26
AK292269_1(AK292269|pid:none) Homo sapiens cDNA FLJ77640 complet... 121 6e-26
(P59108) RecName: Full=Copine-2; AltName: Full=Copine II; &BC03... 121 6e-26
(Q96FN4) RecName: Full=Copine-2; AltName: Full=Copine II; &AB46... 121 6e-26
AC119289_13(AC119289|pid:none) Oryza sativa (japonica cultivar-g... 120 1e-25
AM483321_7(AM483321|pid:none) Vitis vinifera contig VV79X000700.... 119 2e-25
AY892906_1(AY892906|pid:none) Synthetic construct Homo sapiens c... 117 7e-25
AK295557_1(AK295557|pid:none) Homo sapiens cDNA FLJ56085 complet... 117 7e-25
(Q96A23) RecName: Full=Copine-4; AltName: Full=Copine IV; AltNam... 117 7e-25
BX927411_3(BX927411|pid:none) Zebrafish DNA sequence from clone ... 115 3e-24
BC017626_1(BC017626|pid:none) Mus musculus copine VIII, mRNA (cD... 115 3e-24
(Q9DC53) RecName: Full=Copine-8; AltName: Full=Copine VIII; 115 3e-24
AY177785_1(AY177785|pid:none) Homo sapiens copine VIII (CPEVIII)... 115 3e-24
(Q86YQ8) RecName: Full=Copine-8; AltName: Full=Copine VIII; &BC... 115 3e-24
AB168916_1(AB168916|pid:none) Macaca fascicularis testis cDNA, c... 115 3e-24
BC168840_1(BC168840|pid:none) Rattus norvegicus copine VIII, mRN... 115 3e-24
(Q5R4W6) RecName: Full=Copine-6; AltName: Full=Copine VI; &CR86... 115 4e-24
AY892955_1(AY892955|pid:none) Synthetic construct Homo sapiens c... 113 1e-23
(O95741) RecName: Full=Copine-6; AltName: Full=Copine VI; AltNam... 113 1e-23
(Q2KHY1) RecName: Full=Copine-6; &BC112841_1(BC112841|pid:none) 113 1e-23
BC018046_1(BC018046|pid:none) Homo sapiens copine VI (neuronal),... 113 1e-23
AK293655_1(AK293655|pid:none) Homo sapiens cDNA FLJ55997 complet... 113 1e-23
AK125195_1(AK125195|pid:none) Homo sapiens cDNA FLJ43205 fis, cl... 113 1e-23
AM477282_1(AM477282|pid:none) Vitis vinifera contig VV78X135065.... 113 2e-23
(Q9Z140) RecName: Full=Copine-6; AltName: Full=Copine VI; AltNam... 112 4e-23
AK222675_1(AK222675|pid:none) Homo sapiens mRNA for copine 6 var... 110 1e-22
AL163912_1(AL163912|pid:none) Arabidopsis thaliana DNA chromosom... 109 2e-22
AK120851_1(AK120851|pid:none) Oryza sativa Japonica Group cDNA c... 109 2e-22
AK094998_1(AK094998|pid:none) Homo sapiens cDNA FLJ37679 fis, cl... 108 3e-22
AY741136_1(AY741136|pid:none) Arabidopsis thaliana BON3 (BON3) m... 108 5e-22
AB022212_2(AB022212|pid:none) Arabidopsis thaliana genomic DNA, ... 107 7e-22
BT084547_1(BT084547|pid:none) Zea mays full-length cDNA clone ZM... 104 6e-21
BT064766_1(BT064766|pid:none) Zea mays full-length cDNA clone ZM... 104 6e-21
EU953104_1(EU953104|pid:none) Zea mays clone 1382955 copine-3 mR... 104 8e-21
AF314092_1(AF314092|pid:none) Homo sapiens copine I (CPNE1) mRNA... 100 9e-20
BC051994_1(BC051994|pid:none) Mus musculus copine VI, mRNA (cDNA... 99 4e-19
(Q8IYJ1) RecName: Full=Copine-9; AltName: Full=Copine IX; &BC03... 95 5e-18
AC155882_18(AC155882|pid:none) Medicago truncatula chromosome 7 ... 94 1e-17
Z82285_1(Z82285|pid:none) Caenorhabditis elegans Cosmid T28F3, c... 93 2e-17
(Q9XUB9) RecName: Full=Uncharacterized protein T28F3.1; &T25425... 93 2e-17
T24855(T24855)hypothetical protein T12A7.1 - Caenorhabditis eleg... 87 2e-15
Z73911_1(Z73911|pid:none) Caenorhabditis elegans Cosmid T12A7, c... 87 2e-15
EF214878_1(EF214878|pid:none) Callithrix jacchus clone M12-45.3_... 86 4e-15
AL109827_4(AL109827|pid:none) Human DNA sequence from clone RP1-... 85 5e-15
T29043(T29043)hypothetical protein B0228.2 - Caenorhabditis eleg... 84 1e-14
(Q09221) RecName: Full=Putative protein tag-308; &U23168_1(U231... 84 1e-14
U23168_5(U23168|pid:none) Caenorhabditis elegans cosmid B0228, c... 84 1e-14
AK017651_1(AK017651|pid:none) Mus musculus 8 days embryo whole b... 83 2e-14
BC135526_1(BC135526|pid:none) Xenopus tropicalis hypothetical pr... 80 1e-13
BC115110_1(BC115110|pid:none) Danio rerio im:7143923, mRNA (cDNA... 80 2e-13
AM457183_1(AM457183|pid:none) Vitis vinifera contig VV78X023262.... 79 5e-13
AC115607_18(AC115607|pid:none) Dictyostelium discoideum chromoso... 79 5e-13
AK010227_1(AK010227|pid:none) Mus musculus adult male tongue cDN... 78 8e-13
AL683894_3(AL683894|pid:none) Mouse DNA sequence from clone RP23... 77 1e-12
AF332058_1(AF332058|pid:none) Mus musculus strain ILS copine 1 p... 76 3e-12
AF332057_1(AF332057|pid:none) Mus musculus strain ISS copine 1 p... 72 4e-11
BC115140_1(BC115140|pid:none) Danio rerio similar to copine III,... 71 1e-10
AK098593_1(AK098593|pid:none) Homo sapiens cDNA FLJ25727 fis, cl... 70 1e-10
BC007017_1(BC007017|pid:none) Homo sapiens copine III, mRNA (cDN... 70 1e-10
BX005012_1(BX005012|pid:none) Zebrafish DNA sequence from clone ... 70 2e-10
FJ032633_4(FJ032633|pid:none) Oryza alta clone a0036L17 charged ... 69 3e-10
AB019227_6(AB019227|pid:none) Arabidopsis thaliana genomic DNA, ... 69 3e-10
AY775334_1(AY775334|pid:none) Capsicum annuum RING-finger protei... 69 5e-10
(Q9SS90) RecName: Full=E3 ubiquitin-protein ligase RGLG1; ... 69 5e-10
BC028613_1(BC028613|pid:none) Homo sapiens copine IV, mRNA (cDNA... 68 6e-10
AY087355_1(AY087355|pid:none) Arabidopsis thaliana clone 34552 m... 67 1e-09
BX470170_2(BX470170|pid:none) Zebrafish DNA sequence from clone ... 67 1e-09
AP004279_15(AP004279|pid:none) Oryza sativa Japonica Group genom... 66 2e-09
AK067750_1(AK067750|pid:none) Oryza sativa Japonica Group cDNA c... 66 2e-09
FJ032625_11(FJ032625|pid:none) Oryza nivara clone a0074E19 SEC14... 66 2e-09
AK013407_1(AK013407|pid:none) Mus musculus 10, 11 days embryo wh... 66 2e-09
AK317211_1(AK317211|pid:none) Arabidopsis thaliana AT5G14420 mRN... 66 3e-09
(Q9LY87) RecName: Full=E3 ubiquitin-protein ligase RGLG2; ... 66 3e-09
EF085051_1(EF085051|pid:none) Picea sitchensis clone WS0273_L17 ... 66 3e-09
DQ646522_1(DQ646522|pid:none) Oryza sativa (japonica cultivar-gr... 65 4e-09
BT054868_1(BT054868|pid:none) Zea mays full-length cDNA clone ZM... 65 4e-09
BT054379_1(BT054379|pid:none) Zea mays full-length cDNA clone ZM... 65 5e-09
AF466200_15(AF466200|pid:none) Sorghum bicolor putative protein ... 65 7e-09
AK126138_1(AK126138|pid:none) Homo sapiens cDNA FLJ44150 fis, cl... 64 9e-09
AC007202_20(AC007202|pid:none) Arabidopsis thaliana chromosome 1... 64 1e-08
AL833786_22(AL833786|pid:none) Mouse DNA sequence from clone RP2... 63 2e-08
AL833786_27(AL833786|pid:none) Mouse DNA sequence from clone RP2... 63 3e-08
AL833786_24(AL833786|pid:none) Mouse DNA sequence from clone RP2... 63 3e-08
AL833786_26(AL833786|pid:none) Mouse DNA sequence from clone RP2... 63 3e-08
EU965348_1(EU965348|pid:none) Zea mays clone 285478 copine famil... 62 6e-08
AL109827_6(AL109827|pid:none) Human DNA sequence from clone RP1-... 60 2e-07
AX971442_1(AX971442|pid:none) Sequence 2245 from Patent EP1104808. 60 2e-07
EF085171_1(EF085171|pid:none) Picea sitchensis clone WS0297_O07 ... 60 2e-07
AL109827_16(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07
AL109827_8(AL109827|pid:none) Human DNA sequence from clone RP1-... 59 3e-07
AL109827_13(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07
AL109827_9(AL109827|pid:none) Human DNA sequence from clone RP1-... 59 3e-07
AL109827_12(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07
AL109827_10(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07
AL109827_18(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07
AL109827_14(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07
AL109827_11(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07
AL109827_15(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07
CT009662_6(CT009662|pid:none) Mouse DNA sequence from clone CH29... 55 4e-06
AC149129_22(AC149129|pid:none) Medicago truncatula chromosome 7 ... 52 6e-05
U21317_10(U21317|pid:none) Caenorhabditis elegans cosmid B0495, ... 51 8e-05
U21317_11(U21317|pid:none) Caenorhabditis elegans cosmid B0495, ... 51 8e-05
(Q09219) RecName: Full=Putative protein tag-178; &H88216(H88216) 51 8e-05
AX970012_1(AX970012|pid:none) Sequence 815 from Patent EP1104808. 48 7e-04
AP006170_21(AP006170|pid:none) Oryza sativa Japonica Group genom... 47 0.001
AK294460_1(AK294460|pid:none) Homo sapiens cDNA FLJ52956 complet... 47 0.002
AJ005377_1(AJ005377|pid:none) Calliphora vicina cDNA encoding fo... 46 0.003
FN357619_21(FN357619|pid:none) Schistosoma mansoni genome sequen... 46 0.003
(P13677) RecName: Full=Protein kinase C, eye isozyme; E... 46 0.003
BX511298_2(BX511298|pid:none) Zebrafish DNA sequence from clone ... 45 0.004
AB001389_1(AB001389|pid:none) Solanum lycopersicum mRNA for CLB1... 45 0.004
EU332955_1(EU332955|pid:none) Picea abies putative copine I (COP... 45 0.006
DQ267216_1(DQ267216|pid:none) Taeniopygia guttata synaptotagmin ... 44 0.010
DQ186663_1(DQ186663|pid:none) Felis catus synaptotagmin I mRNA, ... 44 0.013
(P46096) RecName: Full=Synaptotagmin-1; AltName: Full=Synaptotag... 44 0.013
(P21579) RecName: Full=Synaptotagmin-1; AltName: Full=Synaptotag... 44 0.013
CR859069_1(CR859069|pid:none) Pongo abelii mRNA; cDNA DKFZp459D1... 44 0.013
(P21707) RecName: Full=Synaptotagmin-1; AltName: Full=Synaptotag... 44 0.013
(Q60HC0) RecName: Full=Synaptotagmin-1; AltName: Full=Synaptotag... 44 0.013
AK227322_1(AK227322|pid:none) Arabidopsis thaliana mRNA for CaLB... 44 0.017
(O00445) RecName: Full=Synaptotagmin-5; AltName: Full=Synaptotag... 43 0.022
AK164153_1(AK164153|pid:none) Mus musculus adult male hippocampu... 43 0.022
(Q9R0N5) RecName: Full=Synaptotagmin-5; AltName: Full=Synaptotag... 43 0.022
DQ090951_1(DQ090951|pid:none) Homo sapiens synaptotagmin V mRNA,... 43 0.022
BC046157_1(BC046157|pid:none) Homo sapiens synaptotagmin V, mRNA... 43 0.022
AK032541_1(AK032541|pid:none) Mus musculus adult male olfactory ... 43 0.028
AE014135_59(AE014135|pid:none) Drosophila melanogaster chromosom... 42 0.037
FN357909_6(FN357909|pid:none) Schistosoma mansoni genome sequenc... 42 0.063
AY337620_1(AY337620|pid:none) Schistosoma mansoni protein kinase... 42 0.063
AC024869_3(AC024869|pid:none) Caenorhabditis elegans cosmid Y75B... 42 0.063
CS667541_1(CS667541|pid:none) Sequence 3 from Patent WO200605585... 42 0.063
A55417(A55417;B39454) synaptotagmin II - mouse &AK036357_1(AK03... 40 0.14
(P46097) RecName: Full=Synaptotagmin-2; AltName: Full=Synaptotag... 40 0.14
AB036513_1(AB036513|pid:none) Mus musculus gene for synaptotagmi... 40 0.14
(P29101) RecName: Full=Synaptotagmin-2; AltName: Full=Synaptotag... 40 0.14
AK220537_1(AK220537|pid:none) Mus musculus mRNA for mKIAA4194 pr... 40 0.14
BC095109_1(BC095109|pid:none) Danio rerio zgc:109988, mRNA (cDNA... 40 0.14
(Q6XYQ8) RecName: Full=Synaptotagmin-10; AltName: Full=Synaptota... 40 0.18
AJ303369_1(AJ303369|pid:none) Caenorhabditis elegans partial mRN... 40 0.18
(P24507) RecName: Full=Synaptotagmin-C; AltName: Full=Synaptic v... 40 0.18
(Q5RCK6) RecName: Full=Synaptotagmin-10; AltName: Full=Synaptota... 40 0.18
CU633438_320(CU633438|pid:none) Podospora anserina genomic DNA c... 40 0.18
AM410045_1(AM410045|pid:none) Physcomitrella patens mRNA for NTM... 40 0.24
AB171288_1(AB171288|pid:none) Macaca fascicularis brain cDNA clo... 40 0.24
EF469241_1(EF469241|pid:none) Cyclorana alboguttata synaptotagmi... 40 0.24
PC6300(PC6300) synaptotagmin X - rat (fragment) &U85513_1(U8551... 39 0.41
(O08625) RecName: Full=Synaptotagmin-10; AltName: Full=Synaptota... 39 0.41
BC076166_1(BC076166|pid:none) Danio rerio synaptotagmin V, mRNA ... 39 0.41
AC149129_26(AC149129|pid:none) Medicago truncatula chromosome 7 ... 39 0.53
AM451478_2(AM451478|pid:none) Vitis vinifera contig VV78X091163.... 39 0.53
(Q5T7P8) RecName: Full=Synaptotagmin-6; AltName: Full=Synaptotag... 39 0.53
(Q62746) RecName: Full=Synaptotagmin-6; AltName: Full=Synaptotag... 39 0.53
BC099185_1(BC099185|pid:none) Rattus norvegicus synaptotagmin VI... 39 0.53
AP004305_9(AP004305|pid:none) Oryza sativa Japonica Group genomi... 39 0.53
AK056448_1(AK056448|pid:none) Homo sapiens cDNA FLJ31886 fis, cl... 39 0.53
BC065065_1(BC065065|pid:none) Mus musculus synaptotagmin VI, mRN... 38 0.70
BC050760_1(BC050760|pid:none) Mus musculus synaptotagmin VI, mRN... 38 0.70
U55856_4(U55856|pid:none) Caenorhabditis elegans cosmid F31E8, c... 38 0.70
BC152174_1(BC152174|pid:none) Danio rerio synaptotagmin V, mRNA ... 38 0.70
CU210935_2(CU210935|pid:none) Mouse DNA sequence from clone DN-2... 38 0.70
CR382123_599(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 38 0.70
AX405920_1(AX405920|pid:none) Sequence 335 from Patent WO0222660. 38 0.91
FN313605_1(FN313605|pid:none) Schistosoma japonicum isolate Anhu... 38 0.91
(O43581) RecName: Full=Synaptotagmin-7; AltName: Full=Synaptotag... 38 0.91
U03125_1(U03125|pid:none) Aplysia californica synaptotagmin, p65... 37 1.2
BC156051_1(BC156051|pid:none) Synthetic construct Homo sapiens c... 37 1.2
(Q9HC10) RecName: Full=Otoferlin; AltName: Full=Fer-1-like prote... 37 1.2
AF183186_1(AF183186|pid:none) Homo sapiens brain otoferlin short... 37 1.2
AK296272_1(AK296272|pid:none) Homo sapiens cDNA FLJ51875 complet... 37 1.2
AC116920_16(AC116920|pid:none) Dictyostelium discoideum chromoso... 37 1.5
(Q9ESF1) RecName: Full=Otoferlin; AltName: Full=Fer-1-like prote... 37 1.5
(Q9ERC5) RecName: Full=Otoferlin; AltName: Full=Fer-1-like prote... 37 1.5
AP004458_9(AP004458|pid:none) Oryza sativa Japonica Group genomi... 37 1.5
EF576155_1(EF576155|pid:none) Oryza sativa (indica cultivar-grou... 37 1.5
CU928175_640(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 37 1.5
AK033317_1(AK033317|pid:none) Mus musculus 15 days embryo male t... 37 1.5
AF183183_1(AF183183|pid:none) Mus musculus cochlear otoferlin (O... 37 1.5
AK089115_1(AK089115|pid:none) Mus musculus 10 days neonate olfac... 37 2.0
S58402(S58402) synaptotagmin V - rat (fragment) &U20108_1(U2010... 37 2.0
(Q86SS6) RecName: Full=Synaptotagmin-9; AltName: Full=Synaptotag... 37 2.0
(Q925C0) RecName: Full=Synaptotagmin-9; AltName: Full=Synaptotag... 37 2.0
BC105660_1(BC105660|pid:none) Mus musculus synaptotagmin VII, mR... 36 2.6
BX294190_2(BX294190|pid:none) Zebrafish DNA sequence from clone ... 36 2.6
(Q16974) RecName: Full=Calcium-dependent protein kinase C; ... 36 2.6
AF336854_1(AF336854|pid:none) Rattus norvegicus synaptotagmin VI... 36 2.6
AB075901_1(AB075901|pid:none) Mus musculus mRNA for synaptotagmi... 36 2.6
AF336859_1(AF336859|pid:none) Rattus norvegicus synaptotagmin VI... 36 2.6
FN357658_1(FN357658|pid:none) Schistosoma mansoni genome sequenc... 36 2.6
AF336857_1(AF336857|pid:none) Rattus norvegicus synaptotagmin VI... 36 2.6
(Q9R0N7) RecName: Full=Synaptotagmin-7; AltName: Full=Synaptotag... 36 2.6
BC080256_1(BC080256|pid:none) Danio rerio zgc:91875, mRNA (cDNA ... 36 2.6
AK005311_1(AK005311|pid:none) Mus musculus adult male cerebellum... 36 2.6
CP000875_3945(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 36 3.4
CP000875_3947(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 36 3.4
FN357619_23(FN357619|pid:none) Schistosoma mansoni genome sequen... 36 3.5
AY325502_1(AY325502|pid:none) Aplysia californica synaptotagmin ... 35 4.5
AF484090_1(AF484090|pid:none) Lymnaea stagnalis synaptotagmin I ... 35 4.5
Y17316_1(Y17316|pid:none) Erysiphe pisi mRNA for putative transm... 35 4.5
AF038535_1(AF038535|pid:none) Homo sapiens synaptotagmin VII mRN... 35 4.5
AY601284_1(AY601284|pid:none) Haemophilus influenzae strain AAr9... 35 4.5
AE014188_235(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.5
EF085232_1(EF085232|pid:none) Picea sitchensis clone WS0297_M14 ... 35 4.5
AB000893_1(AB000893|pid:none) Mus musculus mRNA for synaptotagmi... 35 5.9
FN357420_3(FN357420|pid:none) Schistosoma mansoni genome sequenc... 35 5.9
(P40748) RecName: Full=Synaptotagmin-3; AltName: Full=Synaptotag... 35 5.9
BC031067_1(BC031067|pid:none) Homo sapiens synaptotagmin III, mR... 35 5.9
BC028379_1(BC028379|pid:none) Homo sapiens synaptotagmin III, mR... 35 5.9
(O35681) RecName: Full=Synaptotagmin-3; AltName: Full=Synaptotag... 35 5.9
AF375464_1(AF375464|pid:none) Rattus norvegicus synaptotagmin 3 ... 35 5.9
AE014187_55(AE014187|pid:none) Plasmodium falciparum 3D7 chromos... 35 5.9
CP000764_847(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 35 7.7
BT070117_1(BT070117|pid:none) Zea mays full-length cDNA clone ZM... 35 7.7
BX548072_8(BX548072|pid:none) Zebrafish DNA sequence from clone ... 35 7.7
FJ550353_1(FJ550353|pid:none) Daphnia magna synaptotagmin I isof... 35 7.7

>BC136053_1(BC136053|pid:none) Xenopus tropicalis copine V, mRNA (cDNA
clone MGC:122580 IMAGE:7656400), complete cds.
Length = 556

Score = 116 bits (291), Expect(2) = 2e-32
Identities = 81/214 (37%), Positives = 111/214 (51%), Gaps = 11/214 (5%)
Frame = +3

Query: 624 LHYNTPTHESEYARSILAVGNVLAPYDSDGKIELLGFGAE-RFGGVTSHCFQFGPKAE-- 794
LHY P + Y ++ AVG ++ YDSD GFGA+ G SH F E
Sbjct: 323 LHYMNPYQLNAYGMALKAVGEIIQDYDSDKLFPAYGFGAKIPPDGKISHEFALNGDIENP 382

Query: 795 -ARGIEEVLSTYNKVIPTIKLSYPTNFQEIIKHAHKKSIKGVDSKNQKYTILLILXXXXX 971
GI+ VL Y K + T++L PTNF +I + + G + +Y +LLI+
Sbjct: 383 NCVGIQGVLEAYFKSLRTVQLYGPTNFASVINQVARAA--GDVTDGSQYYVLLIITDGVI 440

Query: 972 XXXXXXXXXXVKASSKAPLSIVIVGVGIASFELMKKLDGDENQLSDKNGVIATRDIVQFV 1151
V ASS P+SI+IVGVG A F+ M++LDGDE ++S + G A RDIVQFV
Sbjct: 441 SDMVQTKEAIVNASS-LPMSIIIVGVGPAEFDAMEELDGDEVRVSSR-GRFAERDIVQFV 498

Query: 1152 PFKKYEN-------DPEQLAAETLCEIPEQLIGY 1232
PF+ Y + +LA + L EIPEQ + Y
Sbjct: 499 PFRDYVDRSGNQVLSMARLAKDVLAEIPEQFLSY 532

Score = 47.8 bits (112), Expect(2) = 2e-32
Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Frame = +2

Query: 77 NFSSATINLSKVDDTVNVSNATINLSKVTIDPSNQMSNPSNQGI-------------NLS 217
N S + N+SK D + + T L +V P +++ P GI LS
Sbjct: 92 NVDSRSCNISKHKDFLGQAFCT--LGEVIGSPRSRLEKPLT-GIPGKKCGTIILSAEELS 148

Query: 218 KCTKVELRFKCMNLKDM-DTFSKSDPQIFVYEKKGXXXXXXXSKPILIGSTEMISNNLNP 394
C + C N D D F KSDP + Y K TE+I N LNP
Sbjct: 149 NCRDIVTMQLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHK------TEVIKNTLNP 202

Query: 395 VFKK-TVTI------DYHFERIQNLKFEVLDIDGGGKNDTIGDFSITLGNIISKPGKKVI 553
V++ T+ + DY + +K +V D D GG +D IG+F+ + + + +
Sbjct: 203 VWQPFTIPVRALCNGDYD----RTVKVDVYDWDRGGSHDFIGEFTTSYRELSRGQSQFSV 258

Query: 554 GEI-----KCNGKQ---TGTIEIIA 604
E+ KC K+ +GT+ +++
Sbjct: 259 YEVLNPKKKCKKKKYINSGTVTLLS 283

Score = 80.5 bits (197), Expect = 1e-13
Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Frame = +2

Query: 224 TKVELRFKCMNLKDMDTFSKSDPQIFVYEKKGXXXXXXXSKPILIGSTEMISNNLNPVFK 403
TK+E+ C +L DMDTFSKSDP + +Y + + G TE+I N LNP F
Sbjct: 17 TKIEITVSCRSLLDMDTFSKSDPVVVLYVQ-----GVGNKEWTEFGRTEVIDNTLNPDFV 71

Query: 404 KTVTIDYHFERIQNLKFEVLDIDGGGKN-----DTIGDFSITLGNIISKPGKKVIGEIK- 565
+ +DY FE QNL+F+V ++D N D +G TLG +I P ++ +
Sbjct: 72 RKFVLDYFFEEKQNLRFDVFNVDSRSCNISKHKDFLGQAFCTLGEVIGSPRSRLEKPLTG 131

Query: 566 CNGKQTGTIEIIA 604
GK+ GTI + A
Sbjct: 132 IPGKKCGTIILSA 144

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,596,500,717
Number of extensions: 30386374
Number of successful extensions: 88023
Number of sequences better than 10.0: 251
Number of HSP's gapped: 87494
Number of HSP's successfully gapped: 409
Length of query: 432
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 301
Effective length of database: 621,205,444
Effective search space: 186982838644
Effective search space used: 186982838644
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.80 gvh: 0.33 alm: 0.30 top: 0.53 tms: 0.07 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: endoplasmic reticulum
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U09708-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0