Contig-U09708-1 |
Contig ID |
Contig-U09708-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1287 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
4175844 |
End point |
4174565 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
3 |
Link to clone list |
U09708 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.17 |
Homology vs DNA |
Query= Contig-U09708-1 (Contig-U09708-1Q) /CSM_Contig/Contig-U09708-1Q.Seq.d (1297 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ433506) Dictyostelium discoideum cDNA clone:ddv22h04, 3' ... 1211 0.0 1 (BJ415291) Dictyostelium discoideum cDNA clone:ddv22h04, 5' ... 565 0.0 3 (AU060281) Dictyostelium discoideum slug cDNA, clone SLA852. 565 e-156 1 (AY593970) Dictyostelium discoideum copine B (cpnB) mRNA, co... 68 2e-34 8 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 64 1e-17 15 (BJ372952) Dictyostelium discoideum cDNA clone:ddc15i02, 3' ... 54 3e-17 5 (AU036986) Dictyostelium discoideum slug cDNA, clone SSA705. 54 9e-15 4 (BJ359503) Dictyostelium discoideum cDNA clone:ddc15i02, 5' ... 68 3e-10 3 (AU039760) Dictyostelium discoideum slug cDNA, clone SLG357. 48 4e-08 3 (BJ429091) Dictyostelium discoideum cDNA clone:ddv2h08, 3' e... 36 2e-05 4 (FE242688) CAPG7288.rev CAPG Naegleria gruberi amoeba stage ... 46 3e-04 2 (FE268017) CAZO6484.rev CAZO Naegleria gruberi Flagellate St... 46 3e-04 2 (FE232470) CAPG1766.rev CAPG Naegleria gruberi amoeba stage ... 46 3e-04 2 (FE268018) CAZO6484.fwd CAZO Naegleria gruberi Flagellate St... 46 3e-04 2 (FE240698) CAPG5976.rev CAPG Naegleria gruberi amoeba stage ... 46 3e-04 2 (FE236417) CAPG388.rev CAPG Naegleria gruberi amoeba stage N... 46 3e-04 2 (FE233848) CAPG2503.rev CAPG Naegleria gruberi amoeba stage ... 46 0.001 2 (AY332759) Dictyostelium discoideum copine a (cpna) mRNA, co... 40 0.004 3 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 0.012 18 (BX950229) Methanococcus maripaludis strain S2, complete seq... 40 0.050 23 (DD307082) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 40 0.11 2 (AM180252) Lawsonia intracellularis PHE/MN1-00. 40 0.11 2 (DD307691) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 40 0.16 2 (AC180277) Strongylocentrotus purpuratus clone R3-3008N13, W... 50 0.21 1 (AC178216) Strongylocentrotus purpuratus clone R3-3085H18, W... 50 0.21 1 (AC176537) Strongylocentrotus purpuratus clone R3-3075M10, W... 50 0.21 1 (AC175839) Strongylocentrotus purpuratus clone R3-15M11, WOR... 50 0.21 1 (AC232006) Solanum tuberosum strain Diploid genotype RH89-03... 46 0.33 7 (AC161402) Medicago truncatula chromosome 2 BAC clone mte1-6... 40 0.43 5 (EA688596) Sequence 67475 from patent US 7365185. 42 0.66 2 (EJ130032) 1092343425368 Global-Ocean-Sampling_GS-27-01-01-1... 34 0.77 3 (AC152148) Dasypus novemcinctus clone VMRC5-401A11, WORKING ... 48 0.84 1 (DV854054) col1314 Colonial bentgrass EST Agrostis capillari... 48 0.84 1 (DN303327) PL05002B2C08 cDNA from sexually mature hermaphodi... 48 0.84 1 (AC093568) Oryza sativa chromosome 10 clone OSJNBa0029P16, c... 36 1.0 6 (AE017308) Mycoplasma mobile 163K complete genome. 36 1.2 21 (EV171450) 0152154 Brassica napus Etiolated seedlings (Uni-Z... 46 1.2 2 (AL132952) Caenorhabditis elegans YAC Y51H4A. 34 1.6 12 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 2.9 18 (CW287335) 104_765_11411361_148_35527_041 Sorghum methylatio... 44 3.0 2 (CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 36 3.1 22 (AF040648) Caenorhabditis elegans fosmid H19M22, complete se... 46 3.3 1 (AC117956) Rattus norvegicus clone CH230-363J1, *** SEQUENCI... 46 3.3 1 (CU927994) S.lycopersicum DNA sequence *** SEQUENCING IN PRO... 46 3.3 1 (CU607035) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.3 1 (AC189583) Brassica rapa subsp. pekinensis clone KBrH012D09,... 46 3.3 1 (AC006897) Caenorhabditis elegans clone Y71H2Y, *** SEQUENCI... 46 3.3 1 (AC006875) Caenorhabditis elegans clone Y54F10x, *** SEQUENC... 46 3.3 1 (AZ566364) 220PvF07 Pv MBN #16 (amplified twice) Plasmodium ... 46 3.3 1 (CX192024) 47-E013414-021-002-P01Q-SP6r ADIS-MPIZ 021 Brassi... 46 3.3 1 (CX192023) 47-E013336-021-002-P01Q-T7R ADIS-MPIZ 021 Brassic... 46 3.3 1 (CT792645) Paramecium tetraurelia 3-PRIME EST from clone LK0... 46 3.3 1 (FG076975) UI-FF-IF0-abq-o-07-0-UI.r1 Ceratitis capitata emb... 46 3.3 1 (FE234768) CAPG3000.fwd CAPG Naegleria gruberi amoeba stage ... 46 3.3 1 (CP000395) Borrelia afzelii PKo, complete genome. 46 3.3 1 (CP000013) Borrelia garinii PBi, complete genome. 46 3.3 1 (EK037417) 1092959477923 Global-Ocean-Sampling_GS-31-01-01-1... 34 3.4 4 (CZ946438) 296523 Tomato EcoRI BAC Library Solanum lycopersi... 32 3.5 4 (AL513191) Human DNA sequence from clone RP11-224F24 on chro... 34 3.6 7 (CZ957399) 288680 Tomato EcoRI BAC Library Solanum lycopersi... 40 4.0 2 (CR855142) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 4.5 2 (AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 40 4.7 5 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 36 4.8 8 (DX527487) GH_MBb0047D20r GH_MBb Gossypium hirsutum genomic ... 36 5.6 2 (FK170793) XABT192879.g1 Gateway compatible cien cDNA librar... 34 5.8 3 (AC186911) Microcebus murinus clone CH257-192K7, WORKING DRA... 34 6.1 2 (AC091602) Homo sapiens BAC clone RP11-655M19 from 4, comple... 32 6.1 2 (AC171289) Bos taurus clone CH240-250D2, WORKING DRAFT SEQUE... 34 6.1 2 (AC168144) Bos taurus clone CH240-204B5, WORKING DRAFT SEQUE... 34 6.1 2 (AY484471) Plasmodium berghei TRAP-like protein 1 gene, comp... 32 6.2 4 (AC097480) Homo sapiens BAC clone RP11-123O22 from 4, comple... 32 6.2 2 (AG661582) Macaca fuscata fuscata DNA, clone: MSB2-081N16_F,... 36 6.8 3 (EJ124298) 1092343387139 Global-Ocean-Sampling_GS-27-01-01-1... 32 8.0 3 (EK168908) 1095458065844 Global-Ocean-Sampling_GS-31-01-01-1... 34 8.3 2 (DU039068) 22791 Tomato HindIII BAC Library Solanum lycopers... 34 8.3 2 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 9.1 17 (AM453212) Vitis vinifera contig VV78X031497.8, whole genome... 34 9.3 5 (CL207197) ZMMBBb0569N22f ZMMBBb (HindIII) Zea mays subsp. m... 36 9.4 3 (AC083790) Homo sapiens chromosome 8, clone RP11-46B18, comp... 36 9.8 6
>(BJ433506) Dictyostelium discoideum cDNA clone:ddv22h04, 3' end, single read. Length = 675
Score = 1211 bits (611), Expect = 0.0 Identities = 611/611 (100%) Strand = Plus / Minus
Query: 624 ttacattacaatacaccaactcatgaaagtgagtatgcaagatctatcttggcagtgggt 683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 675 ttacattacaatacaccaactcatgaaagtgagtatgcaagatctatcttggcagtgggt 616
Query: 684 aatgttttagccccatatgattccgatggtaaaattgaattattgggtttcggtgctgaa 743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 615 aatgttttagccccatatgattccgatggtaaaattgaattattgggtttcggtgctgaa 556
Query: 744 agattcggtggtgtaacaagccactgtttccaattcggtccaaaagctgaagctcgcggt 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 555 agattcggtggtgtaacaagccactgtttccaattcggtccaaaagctgaagctcgcggt 496
Query: 804 attgaagaagttttatcaacctataataaagttataccaactattaaattaagttatcca 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 attgaagaagttttatcaacctataataaagttataccaactattaaattaagttatcca 436
Query: 864 actaactttcaagagattattaaacatgctcataaaaagtcaattaaaggtgttgattct 923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 actaactttcaagagattattaaacatgctcataaaaagtcaattaaaggtgttgattct 376
Query: 924 aaaaatcaaaaatatacaattctattaatacttacagatggtgaaatcacagatatggaa 983 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 aaaaatcaaaaatatacaattctattaatacttacagatggtgaaatcacagatatggaa 316
Query: 984 gaaaccattgaagaaattgtaaaagcatcctccaaagctccattatcaatcgttatcgtt 1043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 315 gaaaccattgaagaaattgtaaaagcatcctccaaagctccattatcaatcgttatcgtt 256
Query: 1044 ggtgttggtattgcttcttttgaacttatgaaaaaattagatggtgatgaaaatcaatta 1103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 255 ggtgttggtattgcttcttttgaacttatgaaaaaattagatggtgatgaaaatcaatta 196
Query: 1104 tctgataaaaatggtgttattgctactcgtgacattgttcaattcgtaccattcaaaaaa 1163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 tctgataaaaatggtgttattgctactcgtgacattgttcaattcgtaccattcaaaaaa 136
Query: 1164 tatgaaaatgatcctgaacaattagctgctgaaacactttgtgaaatacctgaacaatta 1223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 tatgaaaatgatcctgaacaattagctgctgaaacactttgtgaaatacctgaacaatta 76
Query: 1224 attggttatag 1234 ||||||||||| Sbjct: 75 attggttatag 65
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,497,357,414 Number of extensions: 91227440 Number of successful extensions: 7420082 Number of sequences better than 10.0: 79 Length of query: 1297 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1273 Effective length of database: 97,308,875,965 Effective search space: 123874199103445 Effective search space used: 123874199103445 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.26 |
Homology vs Protein |
Query= Contig-U09708-1 (Contig-U09708-1Q) /CSM_Contig/Contig-U09708-1Q.Seq.d (1297 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BC136053_1(BC136053|pid:none) Xenopus tropicalis copine V, mRNA ... 116 2e-32 BC123845_1(BC123845|pid:none) Bos taurus copine I, mRNA (cDNA cl... 131 5e-29 AM494965_129(AM494965|pid:none) Leishmania braziliensis chromoso... 130 8e-29 FJ958358_1(FJ958358|pid:none) Ovis aries copine I (CPNE1) mRNA, ... 130 8e-29 AK220288_1(AK220288|pid:none) Mus musculus mRNA for mKIAA0765 sp... 130 1e-28 (Q8C166) RecName: Full=Copine-1; AltName: Full=Copine I; &AK028... 130 1e-28 BC050240_1(BC050240|pid:none) Danio rerio copine I, mRNA (cDNA c... 129 2e-28 FJ436394_1(FJ436394|pid:none) Sus scrofa copine I (CPNE1) mRNA, ... 129 3e-28 BC096510_1(BC096510|pid:none) Xenopus tropicalis hypothetical pr... 128 4e-28 (Q7YXU4) RecName: Full=Copine-A; &AY332759_1(AY332759|pid:none) 128 5e-28 BC151889_1(BC151889|pid:none) Danio rerio copine I, mRNA (cDNA c... 127 7e-28 AL109827_5(AL109827|pid:none) Human DNA sequence from clone RP1-... 127 1e-27 AY891920_1(AY891920|pid:none) Synthetic construct Homo sapiens c... 127 1e-27 (Q99829) RecName: Full=Copine-1; AltName: Full=Copine I; &AL109... 127 1e-27 AB170779_1(AB170779|pid:none) Macaca fascicularis brain cDNA clo... 127 1e-27 BC061671_1(BC061671|pid:none) Xenopus laevis copine III, mRNA (c... 125 3e-27 BC045408_1(BC045408|pid:none) Danio rerio copine III, mRNA (cDNA... 125 3e-27 AK292912_1(AK292912|pid:none) Homo sapiens cDNA FLJ77305 complet... 125 3e-27 BC022128_1(BC022128|pid:none) Mus musculus copine II, mRNA (cDNA... 125 4e-27 AY890887_1(AY890887|pid:none) Synthetic construct Homo sapiens c... 125 4e-27 (O75131) RecName: Full=Copine-3; AltName: Full=Copine III; &AB3... 125 4e-27 (Q8BT60) RecName: Full=Copine-3; AltName: Full=Copine III; &AL6... 125 4e-27 BC142290_1(BC142290|pid:none) Bos taurus copine III, mRNA (cDNA ... 125 4e-27 AK220348_1(AK220348|pid:none) Mus musculus mRNA for mKIAA0636 pr... 125 4e-27 AB014536_1(AB014536|pid:none) Homo sapiens mRNA for KIAA0636 pro... 125 4e-27 AK146324_1(AK146324|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 124 6e-27 AM502246_125(AM502246|pid:none) Leishmania infantum chromosome 28. 124 1e-26 BC080879_1(BC080879|pid:none) Xenopus tropicalis cpne3 protein, ... 123 1e-26 BC054636_1(BC054636|pid:none) Danio rerio zgc:64194, mRNA (cDNA ... 123 2e-26 AB046819_1(AB046819|pid:none) Homo sapiens mRNA for KIAA1599 pro... 123 2e-26 EF676600_1(EF676600|pid:none) Picea sitchensis clone WS02743_P13... 122 3e-26 AB463543_1(AB463543|pid:none) Synthetic construct DNA, clone: pF... 122 3e-26 BC036242_1(BC036242|pid:none) Homo sapiens copine III, mRNA (cDN... 122 3e-26 AY892987_1(AY892987|pid:none) Synthetic construct Homo sapiens c... 122 3e-26 (Q9UBL6) RecName: Full=Copine-7; AltName: Full=Copine VII; &AJ1... 122 3e-26 BC106238_1(BC106238|pid:none) Xenopus laevis hypothetical LOC495... 122 4e-26 BC085079_1(BC085079|pid:none) Xenopus laevis hypothetical LOC495... 122 4e-26 AL928881_1(AL928881|pid:none) Zebrafish DNA sequence from clone ... 121 5e-26 AK292269_1(AK292269|pid:none) Homo sapiens cDNA FLJ77640 complet... 121 6e-26 (P59108) RecName: Full=Copine-2; AltName: Full=Copine II; &BC03... 121 6e-26 (Q96FN4) RecName: Full=Copine-2; AltName: Full=Copine II; &AB46... 121 6e-26 AC119289_13(AC119289|pid:none) Oryza sativa (japonica cultivar-g... 120 1e-25 AM483321_7(AM483321|pid:none) Vitis vinifera contig VV79X000700.... 119 2e-25 AY892906_1(AY892906|pid:none) Synthetic construct Homo sapiens c... 117 7e-25 AK295557_1(AK295557|pid:none) Homo sapiens cDNA FLJ56085 complet... 117 7e-25 (Q96A23) RecName: Full=Copine-4; AltName: Full=Copine IV; AltNam... 117 7e-25 BX927411_3(BX927411|pid:none) Zebrafish DNA sequence from clone ... 115 3e-24 BC017626_1(BC017626|pid:none) Mus musculus copine VIII, mRNA (cD... 115 3e-24 (Q9DC53) RecName: Full=Copine-8; AltName: Full=Copine VIII; 115 3e-24 AY177785_1(AY177785|pid:none) Homo sapiens copine VIII (CPEVIII)... 115 3e-24 (Q86YQ8) RecName: Full=Copine-8; AltName: Full=Copine VIII; &BC... 115 3e-24 AB168916_1(AB168916|pid:none) Macaca fascicularis testis cDNA, c... 115 3e-24 BC168840_1(BC168840|pid:none) Rattus norvegicus copine VIII, mRN... 115 3e-24 (Q5R4W6) RecName: Full=Copine-6; AltName: Full=Copine VI; &CR86... 115 4e-24 AY892955_1(AY892955|pid:none) Synthetic construct Homo sapiens c... 113 1e-23 (O95741) RecName: Full=Copine-6; AltName: Full=Copine VI; AltNam... 113 1e-23 (Q2KHY1) RecName: Full=Copine-6; &BC112841_1(BC112841|pid:none) 113 1e-23 BC018046_1(BC018046|pid:none) Homo sapiens copine VI (neuronal),... 113 1e-23 AK293655_1(AK293655|pid:none) Homo sapiens cDNA FLJ55997 complet... 113 1e-23 AK125195_1(AK125195|pid:none) Homo sapiens cDNA FLJ43205 fis, cl... 113 1e-23 AM477282_1(AM477282|pid:none) Vitis vinifera contig VV78X135065.... 113 2e-23 (Q9Z140) RecName: Full=Copine-6; AltName: Full=Copine VI; AltNam... 112 4e-23 AK222675_1(AK222675|pid:none) Homo sapiens mRNA for copine 6 var... 110 1e-22 AL163912_1(AL163912|pid:none) Arabidopsis thaliana DNA chromosom... 109 2e-22 AK120851_1(AK120851|pid:none) Oryza sativa Japonica Group cDNA c... 109 2e-22 AK094998_1(AK094998|pid:none) Homo sapiens cDNA FLJ37679 fis, cl... 108 3e-22 AY741136_1(AY741136|pid:none) Arabidopsis thaliana BON3 (BON3) m... 108 5e-22 AB022212_2(AB022212|pid:none) Arabidopsis thaliana genomic DNA, ... 107 7e-22 BT084547_1(BT084547|pid:none) Zea mays full-length cDNA clone ZM... 104 6e-21 BT064766_1(BT064766|pid:none) Zea mays full-length cDNA clone ZM... 104 6e-21 EU953104_1(EU953104|pid:none) Zea mays clone 1382955 copine-3 mR... 104 8e-21 AF314092_1(AF314092|pid:none) Homo sapiens copine I (CPNE1) mRNA... 100 9e-20 BC051994_1(BC051994|pid:none) Mus musculus copine VI, mRNA (cDNA... 99 4e-19 (Q8IYJ1) RecName: Full=Copine-9; AltName: Full=Copine IX; &BC03... 95 5e-18 AC155882_18(AC155882|pid:none) Medicago truncatula chromosome 7 ... 94 1e-17 Z82285_1(Z82285|pid:none) Caenorhabditis elegans Cosmid T28F3, c... 93 2e-17 (Q9XUB9) RecName: Full=Uncharacterized protein T28F3.1; &T25425... 93 2e-17 T24855(T24855)hypothetical protein T12A7.1 - Caenorhabditis eleg... 87 2e-15 Z73911_1(Z73911|pid:none) Caenorhabditis elegans Cosmid T12A7, c... 87 2e-15 EF214878_1(EF214878|pid:none) Callithrix jacchus clone M12-45.3_... 86 4e-15 AL109827_4(AL109827|pid:none) Human DNA sequence from clone RP1-... 85 5e-15 T29043(T29043)hypothetical protein B0228.2 - Caenorhabditis eleg... 84 1e-14 (Q09221) RecName: Full=Putative protein tag-308; &U23168_1(U231... 84 1e-14 U23168_5(U23168|pid:none) Caenorhabditis elegans cosmid B0228, c... 84 1e-14 AK017651_1(AK017651|pid:none) Mus musculus 8 days embryo whole b... 83 2e-14 BC135526_1(BC135526|pid:none) Xenopus tropicalis hypothetical pr... 80 1e-13 BC115110_1(BC115110|pid:none) Danio rerio im:7143923, mRNA (cDNA... 80 2e-13 AM457183_1(AM457183|pid:none) Vitis vinifera contig VV78X023262.... 79 5e-13 AC115607_18(AC115607|pid:none) Dictyostelium discoideum chromoso... 79 5e-13 AK010227_1(AK010227|pid:none) Mus musculus adult male tongue cDN... 78 8e-13 AL683894_3(AL683894|pid:none) Mouse DNA sequence from clone RP23... 77 1e-12 AF332058_1(AF332058|pid:none) Mus musculus strain ILS copine 1 p... 76 3e-12 AF332057_1(AF332057|pid:none) Mus musculus strain ISS copine 1 p... 72 4e-11 BC115140_1(BC115140|pid:none) Danio rerio similar to copine III,... 71 1e-10 AK098593_1(AK098593|pid:none) Homo sapiens cDNA FLJ25727 fis, cl... 70 1e-10 BC007017_1(BC007017|pid:none) Homo sapiens copine III, mRNA (cDN... 70 1e-10 BX005012_1(BX005012|pid:none) Zebrafish DNA sequence from clone ... 70 2e-10 FJ032633_4(FJ032633|pid:none) Oryza alta clone a0036L17 charged ... 69 3e-10 AB019227_6(AB019227|pid:none) Arabidopsis thaliana genomic DNA, ... 69 3e-10 AY775334_1(AY775334|pid:none) Capsicum annuum RING-finger protei... 69 5e-10 (Q9SS90) RecName: Full=E3 ubiquitin-protein ligase RGLG1; ... 69 5e-10 BC028613_1(BC028613|pid:none) Homo sapiens copine IV, mRNA (cDNA... 68 6e-10 AY087355_1(AY087355|pid:none) Arabidopsis thaliana clone 34552 m... 67 1e-09 BX470170_2(BX470170|pid:none) Zebrafish DNA sequence from clone ... 67 1e-09 AP004279_15(AP004279|pid:none) Oryza sativa Japonica Group genom... 66 2e-09 AK067750_1(AK067750|pid:none) Oryza sativa Japonica Group cDNA c... 66 2e-09 FJ032625_11(FJ032625|pid:none) Oryza nivara clone a0074E19 SEC14... 66 2e-09 AK013407_1(AK013407|pid:none) Mus musculus 10, 11 days embryo wh... 66 2e-09 AK317211_1(AK317211|pid:none) Arabidopsis thaliana AT5G14420 mRN... 66 3e-09 (Q9LY87) RecName: Full=E3 ubiquitin-protein ligase RGLG2; ... 66 3e-09 EF085051_1(EF085051|pid:none) Picea sitchensis clone WS0273_L17 ... 66 3e-09 DQ646522_1(DQ646522|pid:none) Oryza sativa (japonica cultivar-gr... 65 4e-09 BT054868_1(BT054868|pid:none) Zea mays full-length cDNA clone ZM... 65 4e-09 BT054379_1(BT054379|pid:none) Zea mays full-length cDNA clone ZM... 65 5e-09 AF466200_15(AF466200|pid:none) Sorghum bicolor putative protein ... 65 7e-09 AK126138_1(AK126138|pid:none) Homo sapiens cDNA FLJ44150 fis, cl... 64 9e-09 AC007202_20(AC007202|pid:none) Arabidopsis thaliana chromosome 1... 64 1e-08 AL833786_22(AL833786|pid:none) Mouse DNA sequence from clone RP2... 63 2e-08 AL833786_27(AL833786|pid:none) Mouse DNA sequence from clone RP2... 63 3e-08 AL833786_24(AL833786|pid:none) Mouse DNA sequence from clone RP2... 63 3e-08 AL833786_26(AL833786|pid:none) Mouse DNA sequence from clone RP2... 63 3e-08 EU965348_1(EU965348|pid:none) Zea mays clone 285478 copine famil... 62 6e-08 AL109827_6(AL109827|pid:none) Human DNA sequence from clone RP1-... 60 2e-07 AX971442_1(AX971442|pid:none) Sequence 2245 from Patent EP1104808. 60 2e-07 EF085171_1(EF085171|pid:none) Picea sitchensis clone WS0297_O07 ... 60 2e-07 AL109827_16(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07 AL109827_8(AL109827|pid:none) Human DNA sequence from clone RP1-... 59 3e-07 AL109827_13(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07 AL109827_9(AL109827|pid:none) Human DNA sequence from clone RP1-... 59 3e-07 AL109827_12(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07 AL109827_10(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07 AL109827_18(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07 AL109827_14(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07 AL109827_11(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07 AL109827_15(AL109827|pid:none) Human DNA sequence from clone RP1... 59 3e-07 CT009662_6(CT009662|pid:none) Mouse DNA sequence from clone CH29... 55 4e-06 AC149129_22(AC149129|pid:none) Medicago truncatula chromosome 7 ... 52 6e-05 U21317_10(U21317|pid:none) Caenorhabditis elegans cosmid B0495, ... 51 8e-05 U21317_11(U21317|pid:none) Caenorhabditis elegans cosmid B0495, ... 51 8e-05 (Q09219) RecName: Full=Putative protein tag-178; &H88216(H88216) 51 8e-05 AX970012_1(AX970012|pid:none) Sequence 815 from Patent EP1104808. 48 7e-04 AP006170_21(AP006170|pid:none) Oryza sativa Japonica Group genom... 47 0.001 AK294460_1(AK294460|pid:none) Homo sapiens cDNA FLJ52956 complet... 47 0.002 AJ005377_1(AJ005377|pid:none) Calliphora vicina cDNA encoding fo... 46 0.003 FN357619_21(FN357619|pid:none) Schistosoma mansoni genome sequen... 46 0.003 (P13677) RecName: Full=Protein kinase C, eye isozyme; E... 46 0.003 BX511298_2(BX511298|pid:none) Zebrafish DNA sequence from clone ... 45 0.004 AB001389_1(AB001389|pid:none) Solanum lycopersicum mRNA for CLB1... 45 0.004 EU332955_1(EU332955|pid:none) Picea abies putative copine I (COP... 45 0.006 DQ267216_1(DQ267216|pid:none) Taeniopygia guttata synaptotagmin ... 44 0.010 DQ186663_1(DQ186663|pid:none) Felis catus synaptotagmin I mRNA, ... 44 0.013 (P46096) RecName: Full=Synaptotagmin-1; AltName: Full=Synaptotag... 44 0.013 (P21579) RecName: Full=Synaptotagmin-1; AltName: Full=Synaptotag... 44 0.013 CR859069_1(CR859069|pid:none) Pongo abelii mRNA; cDNA DKFZp459D1... 44 0.013 (P21707) RecName: Full=Synaptotagmin-1; AltName: Full=Synaptotag... 44 0.013 (Q60HC0) RecName: Full=Synaptotagmin-1; AltName: Full=Synaptotag... 44 0.013 AK227322_1(AK227322|pid:none) Arabidopsis thaliana mRNA for CaLB... 44 0.017 (O00445) RecName: Full=Synaptotagmin-5; AltName: Full=Synaptotag... 43 0.022 AK164153_1(AK164153|pid:none) Mus musculus adult male hippocampu... 43 0.022 (Q9R0N5) RecName: Full=Synaptotagmin-5; AltName: Full=Synaptotag... 43 0.022 DQ090951_1(DQ090951|pid:none) Homo sapiens synaptotagmin V mRNA,... 43 0.022 BC046157_1(BC046157|pid:none) Homo sapiens synaptotagmin V, mRNA... 43 0.022 AK032541_1(AK032541|pid:none) Mus musculus adult male olfactory ... 43 0.028 AE014135_59(AE014135|pid:none) Drosophila melanogaster chromosom... 42 0.037 FN357909_6(FN357909|pid:none) Schistosoma mansoni genome sequenc... 42 0.063 AY337620_1(AY337620|pid:none) Schistosoma mansoni protein kinase... 42 0.063 AC024869_3(AC024869|pid:none) Caenorhabditis elegans cosmid Y75B... 42 0.063 CS667541_1(CS667541|pid:none) Sequence 3 from Patent WO200605585... 42 0.063 A55417(A55417;B39454) synaptotagmin II - mouse &AK036357_1(AK03... 40 0.14 (P46097) RecName: Full=Synaptotagmin-2; AltName: Full=Synaptotag... 40 0.14 AB036513_1(AB036513|pid:none) Mus musculus gene for synaptotagmi... 40 0.14 (P29101) RecName: Full=Synaptotagmin-2; AltName: Full=Synaptotag... 40 0.14 AK220537_1(AK220537|pid:none) Mus musculus mRNA for mKIAA4194 pr... 40 0.14 BC095109_1(BC095109|pid:none) Danio rerio zgc:109988, mRNA (cDNA... 40 0.14 (Q6XYQ8) RecName: Full=Synaptotagmin-10; AltName: Full=Synaptota... 40 0.18 AJ303369_1(AJ303369|pid:none) Caenorhabditis elegans partial mRN... 40 0.18 (P24507) RecName: Full=Synaptotagmin-C; AltName: Full=Synaptic v... 40 0.18 (Q5RCK6) RecName: Full=Synaptotagmin-10; AltName: Full=Synaptota... 40 0.18 CU633438_320(CU633438|pid:none) Podospora anserina genomic DNA c... 40 0.18 AM410045_1(AM410045|pid:none) Physcomitrella patens mRNA for NTM... 40 0.24 AB171288_1(AB171288|pid:none) Macaca fascicularis brain cDNA clo... 40 0.24 EF469241_1(EF469241|pid:none) Cyclorana alboguttata synaptotagmi... 40 0.24 PC6300(PC6300) synaptotagmin X - rat (fragment) &U85513_1(U8551... 39 0.41 (O08625) RecName: Full=Synaptotagmin-10; AltName: Full=Synaptota... 39 0.41 BC076166_1(BC076166|pid:none) Danio rerio synaptotagmin V, mRNA ... 39 0.41 AC149129_26(AC149129|pid:none) Medicago truncatula chromosome 7 ... 39 0.53 AM451478_2(AM451478|pid:none) Vitis vinifera contig VV78X091163.... 39 0.53 (Q5T7P8) RecName: Full=Synaptotagmin-6; AltName: Full=Synaptotag... 39 0.53 (Q62746) RecName: Full=Synaptotagmin-6; AltName: Full=Synaptotag... 39 0.53 BC099185_1(BC099185|pid:none) Rattus norvegicus synaptotagmin VI... 39 0.53 AP004305_9(AP004305|pid:none) Oryza sativa Japonica Group genomi... 39 0.53 AK056448_1(AK056448|pid:none) Homo sapiens cDNA FLJ31886 fis, cl... 39 0.53 BC065065_1(BC065065|pid:none) Mus musculus synaptotagmin VI, mRN... 38 0.70 BC050760_1(BC050760|pid:none) Mus musculus synaptotagmin VI, mRN... 38 0.70 U55856_4(U55856|pid:none) Caenorhabditis elegans cosmid F31E8, c... 38 0.70 BC152174_1(BC152174|pid:none) Danio rerio synaptotagmin V, mRNA ... 38 0.70 CU210935_2(CU210935|pid:none) Mouse DNA sequence from clone DN-2... 38 0.70 CR382123_599(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 38 0.70 AX405920_1(AX405920|pid:none) Sequence 335 from Patent WO0222660. 38 0.91 FN313605_1(FN313605|pid:none) Schistosoma japonicum isolate Anhu... 38 0.91 (O43581) RecName: Full=Synaptotagmin-7; AltName: Full=Synaptotag... 38 0.91 U03125_1(U03125|pid:none) Aplysia californica synaptotagmin, p65... 37 1.2 BC156051_1(BC156051|pid:none) Synthetic construct Homo sapiens c... 37 1.2 (Q9HC10) RecName: Full=Otoferlin; AltName: Full=Fer-1-like prote... 37 1.2 AF183186_1(AF183186|pid:none) Homo sapiens brain otoferlin short... 37 1.2 AK296272_1(AK296272|pid:none) Homo sapiens cDNA FLJ51875 complet... 37 1.2 AC116920_16(AC116920|pid:none) Dictyostelium discoideum chromoso... 37 1.5 (Q9ESF1) RecName: Full=Otoferlin; AltName: Full=Fer-1-like prote... 37 1.5 (Q9ERC5) RecName: Full=Otoferlin; AltName: Full=Fer-1-like prote... 37 1.5 AP004458_9(AP004458|pid:none) Oryza sativa Japonica Group genomi... 37 1.5 EF576155_1(EF576155|pid:none) Oryza sativa (indica cultivar-grou... 37 1.5 CU928175_640(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 37 1.5 AK033317_1(AK033317|pid:none) Mus musculus 15 days embryo male t... 37 1.5 AF183183_1(AF183183|pid:none) Mus musculus cochlear otoferlin (O... 37 1.5 AK089115_1(AK089115|pid:none) Mus musculus 10 days neonate olfac... 37 2.0 S58402(S58402) synaptotagmin V - rat (fragment) &U20108_1(U2010... 37 2.0 (Q86SS6) RecName: Full=Synaptotagmin-9; AltName: Full=Synaptotag... 37 2.0 (Q925C0) RecName: Full=Synaptotagmin-9; AltName: Full=Synaptotag... 37 2.0 BC105660_1(BC105660|pid:none) Mus musculus synaptotagmin VII, mR... 36 2.6 BX294190_2(BX294190|pid:none) Zebrafish DNA sequence from clone ... 36 2.6 (Q16974) RecName: Full=Calcium-dependent protein kinase C; ... 36 2.6 AF336854_1(AF336854|pid:none) Rattus norvegicus synaptotagmin VI... 36 2.6 AB075901_1(AB075901|pid:none) Mus musculus mRNA for synaptotagmi... 36 2.6 AF336859_1(AF336859|pid:none) Rattus norvegicus synaptotagmin VI... 36 2.6 FN357658_1(FN357658|pid:none) Schistosoma mansoni genome sequenc... 36 2.6 AF336857_1(AF336857|pid:none) Rattus norvegicus synaptotagmin VI... 36 2.6 (Q9R0N7) RecName: Full=Synaptotagmin-7; AltName: Full=Synaptotag... 36 2.6 BC080256_1(BC080256|pid:none) Danio rerio zgc:91875, mRNA (cDNA ... 36 2.6 AK005311_1(AK005311|pid:none) Mus musculus adult male cerebellum... 36 2.6 CP000875_3945(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 36 3.4 CP000875_3947(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 36 3.4 FN357619_23(FN357619|pid:none) Schistosoma mansoni genome sequen... 36 3.5 AY325502_1(AY325502|pid:none) Aplysia californica synaptotagmin ... 35 4.5 AF484090_1(AF484090|pid:none) Lymnaea stagnalis synaptotagmin I ... 35 4.5 Y17316_1(Y17316|pid:none) Erysiphe pisi mRNA for putative transm... 35 4.5 AF038535_1(AF038535|pid:none) Homo sapiens synaptotagmin VII mRN... 35 4.5 AY601284_1(AY601284|pid:none) Haemophilus influenzae strain AAr9... 35 4.5 AE014188_235(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.5 EF085232_1(EF085232|pid:none) Picea sitchensis clone WS0297_M14 ... 35 4.5 AB000893_1(AB000893|pid:none) Mus musculus mRNA for synaptotagmi... 35 5.9 FN357420_3(FN357420|pid:none) Schistosoma mansoni genome sequenc... 35 5.9 (P40748) RecName: Full=Synaptotagmin-3; AltName: Full=Synaptotag... 35 5.9 BC031067_1(BC031067|pid:none) Homo sapiens synaptotagmin III, mR... 35 5.9 BC028379_1(BC028379|pid:none) Homo sapiens synaptotagmin III, mR... 35 5.9 (O35681) RecName: Full=Synaptotagmin-3; AltName: Full=Synaptotag... 35 5.9 AF375464_1(AF375464|pid:none) Rattus norvegicus synaptotagmin 3 ... 35 5.9 AE014187_55(AE014187|pid:none) Plasmodium falciparum 3D7 chromos... 35 5.9 CP000764_847(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 35 7.7 BT070117_1(BT070117|pid:none) Zea mays full-length cDNA clone ZM... 35 7.7 BX548072_8(BX548072|pid:none) Zebrafish DNA sequence from clone ... 35 7.7 FJ550353_1(FJ550353|pid:none) Daphnia magna synaptotagmin I isof... 35 7.7
>BC136053_1(BC136053|pid:none) Xenopus tropicalis copine V, mRNA (cDNA clone MGC:122580 IMAGE:7656400), complete cds. Length = 556
Score = 116 bits (291), Expect(2) = 2e-32 Identities = 81/214 (37%), Positives = 111/214 (51%), Gaps = 11/214 (5%) Frame = +3
Query: 624 LHYNTPTHESEYARSILAVGNVLAPYDSDGKIELLGFGAE-RFGGVTSHCFQFGPKAE-- 794 LHY P + Y ++ AVG ++ YDSD GFGA+ G SH F E Sbjct: 323 LHYMNPYQLNAYGMALKAVGEIIQDYDSDKLFPAYGFGAKIPPDGKISHEFALNGDIENP 382
Query: 795 -ARGIEEVLSTYNKVIPTIKLSYPTNFQEIIKHAHKKSIKGVDSKNQKYTILLILXXXXX 971 GI+ VL Y K + T++L PTNF +I + + G + +Y +LLI+ Sbjct: 383 NCVGIQGVLEAYFKSLRTVQLYGPTNFASVINQVARAA--GDVTDGSQYYVLLIITDGVI 440
Query: 972 XXXXXXXXXXVKASSKAPLSIVIVGVGIASFELMKKLDGDENQLSDKNGVIATRDIVQFV 1151 V ASS P+SI+IVGVG A F+ M++LDGDE ++S + G A RDIVQFV Sbjct: 441 SDMVQTKEAIVNASS-LPMSIIIVGVGPAEFDAMEELDGDEVRVSSR-GRFAERDIVQFV 498
Query: 1152 PFKKYEN-------DPEQLAAETLCEIPEQLIGY 1232 PF+ Y + +LA + L EIPEQ + Y Sbjct: 499 PFRDYVDRSGNQVLSMARLAKDVLAEIPEQFLSY 532
Score = 47.8 bits (112), Expect(2) = 2e-32 Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 29/205 (14%) Frame = +2
Query: 77 NFSSATINLSKVDDTVNVSNATINLSKVTIDPSNQMSNPSNQGI-------------NLS 217 N S + N+SK D + + T L +V P +++ P GI LS Sbjct: 92 NVDSRSCNISKHKDFLGQAFCT--LGEVIGSPRSRLEKPLT-GIPGKKCGTIILSAEELS 148
Query: 218 KCTKVELRFKCMNLKDM-DTFSKSDPQIFVYEKKGXXXXXXXSKPILIGSTEMISNNLNP 394 C + C N D D F KSDP + Y K TE+I N LNP Sbjct: 149 NCRDIVTMQLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHK------TEVIKNTLNP 202
Query: 395 VFKK-TVTI------DYHFERIQNLKFEVLDIDGGGKNDTIGDFSITLGNIISKPGKKVI 553 V++ T+ + DY + +K +V D D GG +D IG+F+ + + + + Sbjct: 203 VWQPFTIPVRALCNGDYD----RTVKVDVYDWDRGGSHDFIGEFTTSYRELSRGQSQFSV 258
Query: 554 GEI-----KCNGKQ---TGTIEIIA 604 E+ KC K+ +GT+ +++ Sbjct: 259 YEVLNPKKKCKKKKYINSGTVTLLS 283
Score = 80.5 bits (197), Expect = 1e-13 Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Frame = +2
Query: 224 TKVELRFKCMNLKDMDTFSKSDPQIFVYEKKGXXXXXXXSKPILIGSTEMISNNLNPVFK 403 TK+E+ C +L DMDTFSKSDP + +Y + + G TE+I N LNP F Sbjct: 17 TKIEITVSCRSLLDMDTFSKSDPVVVLYVQ-----GVGNKEWTEFGRTEVIDNTLNPDFV 71
Query: 404 KTVTIDYHFERIQNLKFEVLDIDGGGKN-----DTIGDFSITLGNIISKPGKKVIGEIK- 565 + +DY FE QNL+F+V ++D N D +G TLG +I P ++ + Sbjct: 72 RKFVLDYFFEEKQNLRFDVFNVDSRSCNISKHKDFLGQAFCTLGEVIGSPRSRLEKPLTG 131
Query: 566 CNGKQTGTIEIIA 604 GK+ GTI + A Sbjct: 132 IPGKKCGTIILSA 144
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 1,596,500,717 Number of extensions: 30386374 Number of successful extensions: 88023 Number of sequences better than 10.0: 251 Number of HSP's gapped: 87494 Number of HSP's successfully gapped: 409 Length of query: 432 Length of database: 1,040,966,779 Length adjustment: 131 Effective length of query: 301 Effective length of database: 621,205,444 Effective search space: 186982838644 Effective search space used: 186982838644 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |