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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09678-1
Contig ID Contig-U09678-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09678-1 (Contig-U09678-1Q) /CSM_Contig/Contig-U09678-1Q.Seq.d
AAATACTCCTTTATGTATCTATTAGATTTTTAGAAAATGAATTTCAGAAA
TATTGATTGGGACTCATTATTTTCCTATTCCACAATTAAGATTGTAAGAA
TAAGGGATAAGAGACTAGGAATTCTTCATTTTGCATTCTTAATAGGTATT
ATTTTATATATTATTGTTGGTACTATATTTTTACAAAAGAAATATTTGGT
ATTAGAGTCACCAATAGGATCGATTAGAACCTCATTAATGGCACCAAGTG
TTAAACCAACAGATTTACCATATTGTTTAAAAAATGGAACAGATACATCA
TATGATGGATATCCAAATAAACCATGTCAATATTGGGATGAATATTTAGT
ATTATATCCTCCATCAGAGGAGAGTTCAATGTTTATTACGACTAGATGTA
CTCAAGAAACTCAATCAACAGTTAATGGATGTAATTTAAGTGAACCTACA
TGTGTATACAATACAACATCATCATCAGATTTCTATATAGCCAATGTGGA
GAATTTTACAATCTTATTGGATCACACATTATCTGCGCCAAGTCTAGGAA
TTCAATATAATGNNNNNNNNN----------TAGGAATTCAATATAATGG
AGCGCAATTAAATGGGCAATTATTGGATACCGATGGTAACCCAATGTCAT
TGCCACCACCAAATATTGTAGGTGTTAAAGGTTCACCAGATATAATGAGT
TTACAAGGAGTCTTAACTGCTGCTGGTGTTGAATCATTGGATAGTCAAGG
TTTAGCAAATAAAAGTCGTACAATTCGTGATGATGGTATTTTAATTTTAT
GTTTTATTACATATAGTAATACTTATACATATAATACTGGAAATTACCAT
TACACTTATCAATTCAAATTGGTTCAAAATACAAAGTATAAAATTGTTGA
ACCAGTTTTCACTAAAGATGTTGAAGATAGGTATATTTTTGATCGTCATG
GAGTTAGAATTATTTTTATTCAAACTGGTCAATTAGGTCAATTTGATTTC
CAAACAATGTTATTAACATTTGTATCAGGTATAGGTTTAGTTACAGCTGC
TTCATTAATTGTGGATATTATTGCTACTAGAATTATGCCACAAAGAAGTA
GATATCAAGAATTAAAATTCCAAGATTCTTCAATTAACAATACTCAAAAA
ACACCAACAAATGATCATACTCCATTATTAAAAGATAATGAAGATACAAT
TAATNAAAATTCATATCAAAATAATAGTTATGAGAAATAATAATATTTAC
TTTTAACAAATATATTAATCGGGTAATAAAATA
Gap gap included
Contig length 1273
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1025711
End point 1026976
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U09678
List of clone(s) 

est1=VFJ576F,1,562
est2=VFF588Z,563,1166
est3=VFJ576Z,694,1265
Translated Amino Acid sequence 
kysfmylldf*KMNFRNIDWDSLFSYSTIKIVRIRDKRLGILHFAFLIGIILYIIVGTIF
LQKKYLVLESPIGSIRTSLMAPSVKPTDLPYCLKNGTDTSYDGYPNKPCQYWDEYLVLYP
PSEESSMFITTRCTQETQSTVNGCNLSEPTCVYNTTSSSDFYIANVENFTILLDHTLSAP
SLGIQYNXXX---

---GIQYNGAQLNGQLLDTDGNPMSLPPPNIVGVKGSPDIMSLQGVLTAAGVESLDSQGL
ANKSRTIRDDGILILCFITYSNTYTYNTGNYHYTYQFKLVQNTKYKIVEPVFTKDVEDRY
IFDRHGVRIIFIQTGQLGQFDFQTMLLTFVSGIGLVTAASLIVDIIATRIMPQRSRYQEL
KFQDSSINNTQKTPTNDHTPLLKDNEDTINXNSYQNNSYEK**yllltnilig**n
Translated Amino Acid sequence (All Frames) 
Frame A:
kysfmylldf*KMNFRNIDWDSLFSYSTIKIVRIRDKRLGILHFAFLIGIILYIIVGTIF
LQKKYLVLESPIGSIRTSLMAPSVKPTDLPYCLKNGTDTSYDGYPNKPCQYWDEYLVLYP
PSEESSMFITTRCTQETQSTVNGCNLSEPTCVYNTTSSSDFYIANVENFTILLDHTLSAP
SLGIQYNXXX---

---*efnimern*mgnywipmvtqchchhqil*vlkvhqi**vykes*lllvlnhwivkv
*qikvvqfvmmvf*fyvllhivilihiileititlinsnwfkiqsikllnqfslkmlkig
iflivmelelflfklvn*vnliskqcy*hlyqv*v*lqllh*lwillllelchkevdikn
*nskilqltilkkhqqmiilhy*kimkiqlxkihikiivmrnnniyf*qiy*sgnki

Frame B:
ntplciy*ifrk*iseiligthyfpipqlrl*e*gird*effilhs**vlfyilllvlyf
ykrniwy*shq*drleph*whqvlnqqiyhiv*kmeqihhmmdiqinhvnigmni*yyil
hqrrvqcllrldvlkklnqqlmdvi*vnlhvytiqhhhqisi*pmwrilqsywithylrq
v*efnimxxx---

---rnsi*wsaikwaiigyrw*pnviattkycrc*rftryneftrslnccwc*iig*srf
sk*ksyns**wyfnfmfyyi**ylyi*ywklplhlsiqigskykv*nc*tsfh*rc*r*v
yf*ssws*nyfysnwsirsi*fpnnviniciryrfsyscfincgyycy*nyatkk*isri
kiprffn*qyskntnk*sysiikr**ryn*xkfisk**l*eiiiftfnkyinrvik

Frame C:
illyvsirflenefqky*lgliiflfhn*dcknkg*etrnssfcilnryyfiyycwyyif
tkeifgirvtnrid*nlingtkc*tnrftilfkkwnryii*wisk*tmsilg*ifsiiss
irgefnvyyd*mysrnsins*wm*fk*tymciqyniiirflysqcgefynligshiicak
srnsi*xxx---

---GIQYNGAQLNGQLLDTDGNPMSLPPPNIVGVKGSPDIMSLQGVLTAAGVESLDSQGL
ANKSRTIRDDGILILCFITYSNTYTYNTGNYHYTYQFKLVQNTKYKIVEPVFTKDVEDRY
IFDRHGVRIIFIQTGQLGQFDFQTMLLTFVSGIGLVTAASLIVDIIATRIMPQRSRYQEL
KFQDSSINNTQKTPTNDHTPLLKDNEDTINXNSYQNNSYEK**yllltnilig**n
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09678-1 (Contig-U09678-1Q)
/CSM_Contig/Contig-U09678-1Q.Seq.d
         (1283 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09678-1 (Contig-U09678-1Q) /CSM_Contig/Conti...  1386  0.0
Contig-U04575-1 (Contig-U04575-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13898-1 (Contig-U13898-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U14428-1 (Contig-U14428-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U12225-1 (Contig-U12225-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U11441-1 (Contig-U11441-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U11132-1 (Contig-U11132-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U10963-1 (Contig-U10963-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U04879-1 (Contig-U04879-1Q) /CSM_Contig/Conti...    36  0.091
Contig-U04421-1 (Contig-U04421-1Q) /CSM_Contig/Conti...    36  0.091

>Contig-U09678-1 (Contig-U09678-1Q) /CSM_Contig/Contig-U09678-1Q.Seq.d
          Length = 1283

 Score = 1386 bits (699), Expect = 0.0
 Identities = 702/702 (100%)
 Strand = Plus / Plus

                                                                        
Query: 582  taggaattcaatataatggagcgcaattaaatgggcaattattggataccgatggtaacc 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582  taggaattcaatataatggagcgcaattaaatgggcaattattggataccgatggtaacc 641

                                                                        
Query: 642  caatgtcattgccaccaccaaatattgtaggtgttaaaggttcaccagatataatgagtt 701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  caatgtcattgccaccaccaaatattgtaggtgttaaaggttcaccagatataatgagtt 701

                                                                        
Query: 702  tacaaggagtcttaactgctgctggtgttgaatcattggatagtcaaggtttagcaaata 761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702  tacaaggagtcttaactgctgctggtgttgaatcattggatagtcaaggtttagcaaata 761

                                                                        
Query: 762  aaagtcgtacaattcgtgatgatggtattttaattttatgttttattacatatagtaata 821
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  aaagtcgtacaattcgtgatgatggtattttaattttatgttttattacatatagtaata 821

                                                                        
Query: 822  cttatacatataatactggaaattaccattacacttatcaattcaaattggttcaaaata 881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  cttatacatataatactggaaattaccattacacttatcaattcaaattggttcaaaata 881

                                                                        
Query: 882  caaagtataaaattgttgaaccagttttcactaaagatgttgaagataggtatatttttg 941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  caaagtataaaattgttgaaccagttttcactaaagatgttgaagataggtatatttttg 941

                                                                        
Query: 942  atcgtcatggagttagaattatttttattcaaactggtcaattaggtcaatttgatttcc 1001
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  atcgtcatggagttagaattatttttattcaaactggtcaattaggtcaatttgatttcc 1001

                                                                        
Query: 1002 aaacaatgttattaacatttgtatcaggtataggtttagttacagctgcttcattaattg 1061
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 aaacaatgttattaacatttgtatcaggtataggtttagttacagctgcttcattaattg 1061

                                                                        
Query: 1062 tggatattattgctactagaattatgccacaaagaagtagatatcaagaattaaaattcc 1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 tggatattattgctactagaattatgccacaaagaagtagatatcaagaattaaaattcc 1121

                                                                        
Query: 1122 aagattcttcaattaacaatactcaaaaaacaccaacaaatgatcatactccattattaa 1181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 aagattcttcaattaacaatactcaaaaaacaccaacaaatgatcatactccattattaa 1181

                                                                        
Query: 1182 aagataatgaagatacaattaatnaaaattcatatcaaaataatagttatgagaaataat 1241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 aagataatgaagatacaattaatnaaaattcatatcaaaataatagttatgagaaataat 1241

                                                      
Query: 1242 aatatttacttttaacaaatatattaatcgggtaataaaata 1283
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 aatatttacttttaacaaatatattaatcgggtaataaaata 1283


 Score = 1114 bits (562), Expect = 0.0
 Identities = 562/562 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatactcctttatgtatctattagatttttagaaaatgaatttcagaaatattgattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaatactcctttatgtatctattagatttttagaaaatgaatttcagaaatattgattgg 60

                                                                       
Query: 61  gactcattattttcctattccacaattaagattgtaagaataagggataagagactagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gactcattattttcctattccacaattaagattgtaagaataagggataagagactagga 120

                                                                       
Query: 121 attcttcattttgcattcttaataggtattattttatatattattgttggtactatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcttcattttgcattcttaataggtattattttatatattattgttggtactatattt 180

                                                                       
Query: 181 ttacaaaagaaatatttggtattagagtcaccaataggatcgattagaacctcattaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttacaaaagaaatatttggtattagagtcaccaataggatcgattagaacctcattaatg 240

                                                                       
Query: 241 gcaccaagtgttaaaccaacagatttaccatattgtttaaaaaatggaacagatacatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcaccaagtgttaaaccaacagatttaccatattgtttaaaaaatggaacagatacatca 300

                                                                       
Query: 301 tatgatggatatccaaataaaccatgtcaatattgggatgaatatttagtattatatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatgatggatatccaaataaaccatgtcaatattgggatgaatatttagtattatatcct 360

                                                                       
Query: 361 ccatcagaggagagttcaatgtttattacgactagatgtactcaagaaactcaatcaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccatcagaggagagttcaatgtttattacgactagatgtactcaagaaactcaatcaaca 420

                                                                       
Query: 421 gttaatggatgtaatttaagtgaacctacatgtgtatacaatacaacatcatcatcagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttaatggatgtaatttaagtgaacctacatgtgtatacaatacaacatcatcatcagat 480

                                                                       
Query: 481 ttctatatagccaatgtggagaattttacaatcttattggatcacacattatctgcgcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttctatatagccaatgtggagaattttacaatcttattggatcacacattatctgcgcca 540

                                 
Query: 541 agtctaggaattcaatataatg 562
           ||||||||||||||||||||||
Sbjct: 541 agtctaggaattcaatataatg 562


 Score = 36.2 bits (18), Expect = 0.091
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 545 taggaattcaatataatg 562
           ||||||||||||||||||
Sbjct: 582 taggaattcaatataatg 599


 Score = 36.2 bits (18), Expect = 0.091
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 582 taggaattcaatataatg 599
           ||||||||||||||||||
Sbjct: 545 taggaattcaatataatg 562


>Contig-U04575-1 (Contig-U04575-1Q) /CSM_Contig/Contig-U04575-1Q.Seq.d
          Length = 450

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1235 aaataataatatttactttt 1254
            ||||||||||||||||||||
Sbjct: 400  aaataataatatttactttt 419


>Contig-U13898-1 (Contig-U13898-1Q) /CSM_Contig/Contig-U13898-1Q.Seq.d
          Length = 1283

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 183 acaaaagaaatatttggtattag 205
           ||||||||||||||| |||||||
Sbjct: 571 acaaaagaaatattttgtattag 593


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,787
Number of Sequences: 6905
Number of extensions: 24787
Number of successful extensions: 2363
Number of sequences better than 10.0: 287
length of query: 1283
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1267
effective length of database: 5,564,391
effective search space: 7050083397
effective search space used: 7050083397
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.17
Homology vs DNA 
Query= Contig-U09678-1 (Contig-U09678-1Q) /CSM_Contig/Contig-U09678-1Q.Seq.d
         (1283 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ428710) Dictyostelium discoideum cDNA clone:ddv12o21, 3' ...  1193   0.0    1
(BJ414912) Dictyostelium discoideum cDNA clone:ddv20g19, 5' ...  1112   0.0    1
(BJ433113) Dictyostelium discoideum cDNA clone:ddv20g19, 3' ...  1098   0.0    1
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   0.003  16
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    36   0.026  8
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    38   0.039  13
(DB759424) Apis mellifera head cDNA, RIKEN full-length enric...    32   0.044  4
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    36   0.079  7
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   0.097  21
(AC165218) Medicago truncatula chromosome 2 BAC clone mth2-4...    36   0.11   9
(DB762848) Apis mellifera head cDNA, RIKEN full-length enric...    32   0.14   4
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   0.17   12
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    34   0.17   9
(DB758076) Apis mellifera head cDNA, RIKEN full-length enric...    32   0.18   4
(DB765650) Apis mellifera head cDNA, RIKEN full-length enric...    32   0.18   4
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.21   14
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.21   12
(EJ606503) 1092962012069 Global-Ocean-Sampling_GS-29-01-01-1...    44   0.28   2
(EK569371) 1095521067671 Global-Ocean-Sampling_GS-32-01-01-1...    38   0.28   2
(EK456109) 1095468301735 Global-Ocean-Sampling_GS-32-01-01-1...    38   0.29   2
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    30   0.33   16
(AC096502) Rattus norvegicus clone CH230-160C12, *** SEQUENC...    38   0.41   8
(AJ505085) Glaucopsyche alexis partial mitochondrial nd1 gen...    30   0.43   4
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    34   0.44   2
(AC140858) Homo sapiens chromosome 16 clone RP11-1007N21, WO...    36   0.53   9
(AX344559) Sequence 10 from Patent WO0200932.                      36   0.53   12
(AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.81   11
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    38   0.81   12
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.82   13
(AC166828) Mus musculus BAC clone RP23-332O23 from chromosom...    48   0.83   1
(AC140451) Mus musculus BAC clone RP23-52L6 from chromosome ...    48   0.83   1
(AX344962) Sequence 33 from Patent WO0200928.                      48   0.83   1
(CU914587) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.83   1
(EK587338) 1095522120126 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.83   1
(EK578998) 1095521387760 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.83   1
(CT463867) Sus scrofa genomic clone CH242-428F21, genomic su...    48   0.83   1
(CT408997) Sus scrofa genomic clone CH242-511H5, genomic sur...    48   0.83   1
(FF605632) G825P5123RB7.T0 Acorn worm normalized gastrula pE...    48   0.83   1
(FF605631) G825P5123FB7.T0 Acorn worm normalized gastrula pE...    48   0.83   1
(FF512493) G709P556RE11.T0 Acorn worm normalized neurula pEx...    48   0.83   1
(FF506856) G709P5210RF2.T0 Acorn worm normalized neurula pEx...    48   0.83   1
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    38   0.85   11
(EC822108) SME00001498 esmbsro2 Sawyeria marylandensis cDNA,...    38   1.1    3
(CC603255) OGJAW34TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   1.3    3
(EC823647) SME00008301 esmbsro2 Sawyeria marylandensis cDNA,...    38   1.5    3
(CU457491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.5    5
(AL121982) Human DNA sequence from clone RP5-1185H19 on chro...    46   1.5    2
(AC203753) Zea mays chromosome 7 clone CH201-339H4; ZMMBBc03...    36   1.7    2
(AC197592) Zea mays chromosome 7 clone ZMMBBb-539M18; ZMMBBb...    36   1.7    2
(CT027648) Zebrafish DNA sequence from clone CH211-210F3 in ...    36   1.7    4
(CP000107) Ehrlichia canis str. Jake, complete genome.             36   1.8    22
(CC643845) OGMAY65TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   1.8    3
(ER961864) CH260-113M08_T7 CHORI-260 Meleagris gallopavo gen...    44   1.9    2
(FH235311) CHO_OF3428xb09r1.ab1 CHO_OF3 Nicotiana tabacum ge...    38   2.0    3
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    32   2.1    12
(AX344558) Sequence 9 from Patent WO0200932.                       36   2.1    10
(CW000402) ZMMBHf0014i14.f ZMMBHf Zea mays genomic clone ZMM...    36   2.2    2
(CL998449) ZMMBHf0011o10.f ZMMBHf Zea mays genomic clone ZMM...    36   2.2    2
(CC643859) OGMAY65TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   2.2    2
(AM486841) Vitis vinifera contig VV78X077744.5, whole genome...    42   2.2    4
(CG307448) OG5BC12TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   2.2    2
(CG209172) OG1DZ35TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   2.2    2
(CC162216) ii81e09.b1 WGS-ZmaysF (DH5a methyl filtered) Zea ...    36   2.2    2
(BZ541698) OGAGD34TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    36   2.2    2
(BZ654937) OGANS08TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   2.2    2
(BZ654950) OGANS08TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   2.3    2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   2.3    10
(AL034558) Plasmodium falciparum MAL3P2.                           34   2.3    9
(BZ644348) OGANW29TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   2.3    2
(BZ644332) OGANW29TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   2.3    2
(AC101848) Mus musculus chromosome 1, clone RP23-267J24, com...    34   2.4    6
(AC189385) Brassica rapa subsp. pekinensis clone KBrB052E19,...    36   2.7    5
(AY689437) Deerpox virus W-1170-84, complete genome.               42   2.8    8
(AP009295) Solanum lycopersicum genomic DNA, chromosome 8, c...    32   2.8    10
(AM442776) Vitis vinifera, whole genome shotgun sequence, co...    44   2.9    2
(CT573253) Zebrafish DNA sequence from clone CH211-127N13 in...    40   3.0    6
(EJ295963) 1095388038302 Global-Ocean-Sampling_GS-27-01-01-1...    34   3.0    3
(ED464219) AUAC-aaa61g05.g1 Ascaris suum whole genome shotgu...    40   3.1    2
(BX571836) Zebrafish DNA sequence from clone CH211-244M9 in ...    46   3.3    1
(AJ402257) TT virus partial n22 gene for orf1 protein, clone...    46   3.3    1
(BV514960) rko58g07.g1 Clint Pan troglodytes verus STS genom...    46   3.3    1
(AC115881) Mus musculus chromosome 6, clone RP24-365K16, com...    46   3.3    1
(AC226518) Solanum lycopersicum chromosome 2 clone C02SLe006...    46   3.3    1
(AC216704) Solanum lycopersicum chromosome 2 clone C02HBa023...    46   3.3    1
(AC169161) Tachyglossus aculeatus clone TA_Ba-136N23, comple...    46   3.3    1
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    46   3.3    1
(AC092216) Drosophila melanogaster, chromosome 2L, region 25...    46   3.3    1
(AC004639) Drosophila melanogaster DNA sequence (P1 DS06863 ...    46   3.3    1
(AC136483) Rattus norvegicus clone CH230-460P23, *** SEQUENC...    46   3.3    1
(CR933821) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   3.3    1
(AL158842) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   3.3    1
(AC224713) Bos taurus clone CH240-478H13, WORKING DRAFT SEQU...    46   3.3    1
(AC223269) Bos taurus clone CH240-423N18, WORKING DRAFT SEQU...    46   3.3    1
(AC221399) Bos taurus clone CH240-406C20, WORKING DRAFT SEQU...    46   3.3    1
(AC017444) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   3.3    1
(BH351926) CH230-160O6.TV CHORI-230 Segment 1 Rattus norvegi...    46   3.3    1
(ER159282) 1095522164929 Global-Ocean-Sampling_GS-33-01-01-1...    46   3.3    1
(EK313051) 1095462403502 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.3    1
(EJ548922) 1092959426082 Global-Ocean-Sampling_GS-29-01-01-1...    46   3.3    1
(EJ411385) 1093012148181 Global-Ocean-Sampling_GS-28-01-01-1...    46   3.3    1

>(BJ428710) Dictyostelium discoideum cDNA clone:ddv12o21, 3' end,
            single read.
          Length = 604

 Score = 1193 bits (602), Expect = 0.0
 Identities = 602/602 (100%)
 Strand = Plus / Minus


Query: 582  taggaattcaatataatggagcgcaattaaatgggcaattattggataccgatggtaacc 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  taggaattcaatataatggagcgcaattaaatgggcaattattggataccgatggtaacc 545


Query: 642  caatgtcattgccaccaccaaatattgtaggtgttaaaggttcaccagatataatgagtt 701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  caatgtcattgccaccaccaaatattgtaggtgttaaaggttcaccagatataatgagtt 485


Query: 702  tacaaggagtcttaactgctgctggtgttgaatcattggatagtcaaggtttagcaaata 761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484  tacaaggagtcttaactgctgctggtgttgaatcattggatagtcaaggtttagcaaata 425


Query: 762  aaagtcgtacaattcgtgatgatggtattttaattttatgttttattacatatagtaata 821
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424  aaagtcgtacaattcgtgatgatggtattttaattttatgttttattacatatagtaata 365


Query: 822  cttatacatataatactggaaattaccattacacttatcaattcaaattggttcaaaata 881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364  cttatacatataatactggaaattaccattacacttatcaattcaaattggttcaaaata 305


Query: 882  caaagtataaaattgttgaaccagttttcactaaagatgttgaagataggtatatttttg 941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304  caaagtataaaattgttgaaccagttttcactaaagatgttgaagataggtatatttttg 245


Query: 942  atcgtcatggagttagaattatttttattcaaactggtcaattaggtcaatttgatttcc 1001
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244  atcgtcatggagttagaattatttttattcaaactggtcaattaggtcaatttgatttcc 185


Query: 1002 aaacaatgttattaacatttgtatcaggtataggtttagttacagctgcttcattaattg 1061
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184  aaacaatgttattaacatttgtatcaggtataggtttagttacagctgcttcattaattg 125


Query: 1062 tggatattattgctactagaattatgccacaaagaagtagatatcaagaattaaaattcc 1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124  tggatattattgctactagaattatgccacaaagaagtagatatcaagaattaaaattcc 65


Query: 1122 aagattcttcaattaacaatactcaaaaaacaccaacaaatgatcatactccattattaa 1181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64   aagattcttcaattaacaatactcaaaaaacaccaacaaatgatcatactccattattaa 5


Query: 1182 aa 1183
            ||
Sbjct: 4    aa 3

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,636,551,342
Number of extensions: 104928033
Number of successful extensions: 8795962
Number of sequences better than 10.0: 153
Length of query: 1283
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1259
Effective length of database: 97,308,875,965
Effective search space: 122511874839935
Effective search space used: 122511874839935
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09678-1 (Contig-U09678-1Q) /CSM_Contig/Contig-U09678-1Q.Seq.d
         (1283 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115599_40(AC115599|pid:none) Dictyostelium discoideum chromoso...   138   3e-65
AC116305_39(AC116305|pid:none) Dictyostelium discoideum chromoso...   145   1e-59
BC162912_1(BC162912|pid:none) Danio rerio purinergic receptor P2...    50   2e-04
AY292649_1(AY292649|pid:none) Danio rerio ATP-gated ionotropic P...    50   2e-04
CR753832_2(CR753832|pid:none) Zebrafish DNA sequence from clone ...    50   2e-04
(P51576) RecName: Full=P2X purinoceptor 1;          Short=P2X1; ...    48   7e-04
AF078925_1(AF078925|pid:none) Homo sapiens P2X1 receptor gene, p...    48   7e-04
(P51575) RecName: Full=P2X purinoceptor 1;          Short=P2X1; ...    48   7e-04
FN319519_1(FN319519|pid:none) Schistosoma japonicum isolate Anhu...    47   0.002
FN319518_1(FN319518|pid:none) Schistosoma japonicum isolate Anhu...    47   0.002
AY812495_1(AY812495|pid:none) Schistosoma japonicum SJCHGC06625 ...    47   0.002
(P47824) RecName: Full=P2X purinoceptor 1;          Short=P2X1; ...    46   0.003
M80602_1(M80602|pid:none) Rat transmembrane protein (RP-2) mRNA,...    46   0.003
FJ424511_1(FJ424511|pid:none) Rattus norvegicus purinergic recep...    46   0.003
AJ511278_1(AJ511278|pid:none) Gallus gallus mRNA for P2X1 recept...    44   0.016
Y18008_1(Y18008|pid:none) Gallus gallus mRNA for P2X4 receptor.        43   0.021
(Q99571) RecName: Full=P2X purinoceptor 4;          Short=P2X4; ...    43   0.028
AY891105_1(AY891105|pid:none) Synthetic construct Homo sapiens c...    43   0.028
AY389806_1(AY389806|pid:none) Aplysia californica purinergic ATP...    43   0.028
AF191093_1(AF191093|pid:none) Homo sapiens P2X4 purinoceptor gen...    43   0.028
BT019739_1(BT019739|pid:none) Homo sapiens purinergic receptor P...    43   0.028
BC033826_1(BC033826|pid:none) Homo sapiens purinergic receptor P...    43   0.028
AF020315_1(AF020315|pid:none) Gallus gallus P2X ATP receptor (P2...    43   0.028
AY389805_1(AY389805|pid:none) Aplysia californica purinergic ATP...    43   0.028
AJ251460_1(AJ251460|pid:none) Mus musculus mRNA for p2b4b recept...    40   0.14
X91200_1(X91200|pid:none) R.norcegicus mRNA for P2X4 protein.          40   0.14
AK150351_1(AK150351|pid:none) Mus musculus bone marrow macrophag...    40   0.14
(P51577) RecName: Full=P2X purinoceptor 4;          Short=P2X4; ...    40   0.14
AK163104_1(AK163104|pid:none) Mus musculus adult male aorta and ...    40   0.14
U32497_1(U32497|pid:none) Rattus norvegicus neuronal P2X4 ATP-ga...    40   0.14
AF089751_1(AF089751|pid:none) Mus musculus ATP receptor P2X4 sub...    40   0.14
A47359_1(A47359|pid:none) Sequence 6 from Patent WO9533048.  &X8...    40   0.14
AF089752_1(AF089752|pid:none) Mus musculus ATP receptor P2X4 sub...    40   0.14
(Q9JJX6) RecName: Full=P2X purinoceptor 4;          Short=P2X4; ...    40   0.14
AJ308518_1(AJ308518|pid:none) Gallus gallus P2X5 gene for P2X5 r...    40   0.18
AF205066_1(AF205066|pid:none) Gallus gallus ATP-gated ion channe...    40   0.23
AJ251461_1(AJ251461|pid:none) Mus musculus mRNA for p2b4c recept...    39   0.31
BT074768_1(BT074768|pid:none) Osmerus mordax clone omor-eva-518-...    39   0.52
AF308149_1(AF308149|pid:none) Xenopus laevis clone b ATP-gated i...    39   0.52
BX511158_8(BX511158|pid:none) Zebrafish DNA sequence from clone ...    38   0.68
AF500300_1(AF500300|pid:none) Danio rerio ATP-gated ionotropic r...    38   0.68
AL953908_10(AL953908|pid:none) Zebrafish DNA sequence from clone...    38   0.68
DQ518873_1(DQ518873|pid:none) Hydra magnipapillata P2X-like rece...    38   0.68
AF317643_1(AF317643|pid:none) Danio rerio P2x purinoceptor subun...    38   0.89
BC066495_1(BC066495|pid:none) Danio rerio purinergic receptor P2...    38   0.89
BC163063_1(BC163063|pid:none) Danio rerio purinergic receptor P2...    37   2.0
AY292650_1(AY292650|pid:none) Danio rerio ATP-gated ionotropic P...    37   2.0
AY691685_1(AY691685|pid:none) Sus scrofa P2X1 receptor (P2X1R) m...    36   2.6
(Q9NR38) RecName: Full=P2X purinoceptor 2;          Short=P2X2; ...    36   2.6
AF109388_1(AF109388|pid:none) Homo sapiens P2X2B receptor mRNA, ...    36   2.6
AF109387_1(AF109387|pid:none) Homo sapiens P2X2A receptor mRNA, ...    36   2.6
S60334(S60334)purinoceptor P2X - rat                                   36   3.4
AL935159_7(AL935159|pid:none) Mouse DNA sequence from clone RP23...    36   3.4
BC145181_1(BC145181|pid:none) Mus musculus purinergic receptor P...    36   3.4
AL935159_8(AL935159|pid:none) Mouse DNA sequence from clone RP23...    36   3.4
S71344(S71344) purinergic receptor P2X5 - rat  &X97328_1(X97328|...    36   3.4
X90651_1(X90651|pid:none) R.norvegicus mRNA for P2X3 receptor.         36   3.4
BC081783_1(BC081783|pid:none) Rattus norvegicus purinergic recep...    36   3.4
(P51578) RecName: Full=P2X purinoceptor 5;          Short=P2X5; ...    36   3.4
AF084975_1(AF084975|pid:none) Rattus norvegicus P2X3b receptor m...    36   3.4
BC095293_1(BC095293|pid:none) Danio rerio purinergic receptor P2...    35   4.4
AM488984_1(AM488984|pid:none) Vitis vinifera contig VV78X269211....    35   4.4
AF308151_1(AF308151|pid:none) Xenopus laevis clone d ATP-gated i...    35   4.4
Y10473_1(Y10473|pid:none) R.norvegicus mRNA for P2X2 receptor, s...    35   5.8
AY346374_1(AY346374|pid:none) Homo sapiens P2X2B receptor (P2X2)...    35   7.6
BC042317_1(BC042317|pid:none) Danio rerio purinergic receptor P2...    35   7.6
BC023089_1(BC023089|pid:none) Mus musculus purinergic receptor P...    34   9.9
CP001324_316(CP001324|pid:none) Micromonas sp. RCC299 chromosome...    34   9.9

>AC115599_40(AC115599|pid:none) Dictyostelium discoideum chromosome
           2 map 4229098-4354721 strain AX4, complete sequence.
           &EU047552_1(EU047552|pid:none)
          Length = 378

 Score =  138 bits (347), Expect(2) = 3e-65
 Identities = 73/173 (42%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
 Frame = +1

Query: 49  NIDWDSLFSYSTIKIVRIRDKRLGILHXXXXXXXXXXXXXXXXXXQKKYLVLESPIGSIR 228
           + DWD +F YST+KIVRIRD+RLGILH                  +K YL  E PIGS+R
Sbjct: 4   SFDWDDIFQYSTVKIVRIRDRRLGILHLSFLVGIVAYIVVYSAIIKKGYLFTEVPIGSVR 63

Query: 229 TSLMAPSVKPTDLPYCLKNGTDTSYDGYPNKPCQYWDEYLVLYPPSEESSMFITTRCTQE 408
           TSL  P+   ++L YC     + S   +    C YWDE L L+P  ++S+   TTR
Sbjct: 64  TSLKGPNTFASNLTYCSNQQHNGSTYPFTPLECNYWDEQLALFPVGQDSTFTCTTRVRLS 123

Query: 409 TQSTVNGCNLSEPTC--VYNTTSSSDFYIANVENFTILLDHTLSAPSLGIQYN 561
            Q     CN ++PTC  V    S+ + YIA++E+FTIL+DHT+ A S G Q+N
Sbjct: 124 KQEA--NCNFTDPTCKFVDEPGSAKNIYIADIESFTILIDHTMYASSSGSQFN 174

 Score =  135 bits (340), Expect(2) = 3e-65
 Identities = 73/197 (37%), Positives = 112/197 (56%), Gaps = 3/197 (1%)
 Frame = +2

Query: 584  GIQYNGAQLNGQLLDTDGNPMSLPPPNI-VGVKGSPDIMSLQGVLTAAGVESLDSQGLAN 760
            G Q+N   L+G +L+ DG+ + +      +GV G PDIM++  +L+  GV SLD     +
Sbjct: 170  GSQFNAVDLHGYILNQDGDEVQIDANGTSIGVSGKPDIMTIGQLLSFGGV-SLDQASPVD 228

Query: 761  KSRTIRDDGILILCFIXXXXXXXXXXXXXXXXXQFKLVQNTKYKIVEPVFTKDVEDRYIF 940
             + +IR DG+++  FI                   + + NT Y + E +  + +  R ++
Sbjct: 229  SNVSIRYDGVVLFVFITYSNTYTYSTSDFKYVYSVQQIANTIYDVPETIILESIHSRLLY 288

Query: 941  DRHGVRIIFIQTGQLGQFDFQTMLLTFVSGIGLVTAASLIVDIIATRIMPQRSRYQELKF 1120
             RHG+R+IFIQTG +G F FQT+LLT VSG+GL+  A+ +VD +A R++PQR  Y  LKF
Sbjct: 289  KRHGIRVIFIQTGTIGSFHFQTLLLTLVSGLGLLAVATTVVDQLAIRLLPQRKSYSSLKF 348

Query: 1121 Q--DSSINNTQKTPTND 1165
            Q  +S  N  +K  T D
Sbjct: 349  QVTESMSNPMKKRITTD 365

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,812,016,454
Number of extensions: 34981229
Number of successful extensions: 84870
Number of sequences better than 10.0: 68
Number of HSP's gapped: 84546
Number of HSP's successfully gapped: 93
Length of query: 427
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 296
Effective length of database: 621,205,444
Effective search space: 183876811424
Effective search space used: 183876811424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.88  gvh: 0.42  alm: 0.17  top: 0.37  tms: 0.13  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	 12.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U09678-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0