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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09672-1
Contig ID Contig-U09672-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09672-1 (Contig-U09672-1Q) /CSM_Contig/Contig-U09672-1Q.Seq.d
TTTAAATGGATGTGATNAACTTTTACAGCTGAACTAGATAAATGCTCAAC
AATTGGTGCATGTGGTTTTTCGTATGCCAAAGTAACATATGATTCATTCA
TGGGTGATTTTACTGTAAATATGTATAAAGAAAATATGTTTAGATGTAAT
GAAGCTATGCCAGACAATTTTATAATTTTTGATTGTGGATCTGGTAGTTC
ATTCCCAGGCCAATACTCAATAAAGTGTATTAAACCGTCTGCAACAACAG
CAACAACAACAACAATATCAACAACTTCACATTCAACAACAACAACAACA
ATATCAACAAGTTCTACAACTTCATCTACAACAAATGGAAATACAATTAG
TAGTGGAGATAGTGGTAGTGGTGGTGGAACTAAATCATCAACAACTGCAC
ATTTGTTTTCCTCTTTAAGTTCTACATCTTCTTCCTCTACATCACCACCA
CCAACTACAACTTCAACTACAACTTCAACTACATCTTCTTCCTCTACATC
ACCACCACCAACTACAGCTTCAACTACAGCTTCAACTACAACTTCAACTA
CATCTTCTTCATCAACTACTGGCGGAGTTAGTGGTGCAACTTGTGAAATA
ACTTCAAACTCAAGTTTAATAGTTAGTTATATAGCAAATACACCATATAT
TCAGTGCAATGGTTCNNNNNNNNN----------NNNNNNNNNNTGNTAC
GCTAATAAATTCATCNATTGNTCAGGNANATCTATCNAATGNTCNATTGA
NAGTGTTNAAGTTTGCAAAGNACNTTGGCAATATGACCCNTCTTCAACTA
CCNCAACCNCTGAAGNTGGNCCNTTACCNAATCNTTCAATTTCNAATTTC
NATTTCNTTTCAACCTTTTACNTTACNTTTATATTATTAACTATTTTTCA
ANATCNTTTAATCNTTTGAAAATTAAAATAATAATAATAATAATAATAAN
TTAAAAAAAAAAAAAATATTNCTNCCGACTGTGTATATAATAATAAAT
Gap gap included
Contig length 988
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3674393
End point 3675295
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09672
List of clone(s) 

est1=VFJ271F,1,665
est2=VFJ271Z,666,970
Translated Amino Acid sequence 
fkwm*XTFTAELDKCSTIGACGFSYAKVTYDSFMGDFTVNMYKENMFRCNEAMPDNFIIF
DCGSGSSFPGQYSIKCIKPSATTATTTTISTTSHSTTTTTISTSSTTSSTTNGNTISSGD
SGSGGGTKSSTTAHLFSSLSSTSSSSTSPPPTTTSTTTSTTSSSSTSPPPTTASTTASTT
TSTTSSSSTTGGVSGATCEITSNSSLIVSYIANTPYIQCNGSXX---

---XXXXYANKFIXXSGXSIXXSIXSVXVCKXXWQYDPSSTTXTXEXGPLPNXSISNFXF
XSTFYXTFILLTIFQXXLIX*klk*******xkkkknixxdcvynnk
Translated Amino Acid sequence (All Frames) 
Frame A:
fkwm*XTFTAELDKCSTIGACGFSYAKVTYDSFMGDFTVNMYKENMFRCNEAMPDNFIIF
DCGSGSSFPGQYSIKCIKPSATTATTTTISTTSHSTTTTTISTSSTTSSTTNGNTISSGD
SGSGGGTKSSTTAHLFSSLSSTSSSSTSPPPTTTSTTTSTTSSSSTSPPPTTASTTASTT
TSTTSSSSTTGGVSGATCEITSNSSLIVSYIANTPYIQCNGSXX---

---xxxxxr**ihxlxrxiyxmxx*xcxslqxtlai*pxfnyxnx*xwxxtxsfnfxfxf
xfnllxyxyiinyfsxsfnxlkikiiiiiiix*kkkkyxxrlci***

Frame B:
lngcdxllqln*inaqqlvhvvfrmpk*hmihswvill*icikkicldvmklcqtil*fl
ivdlvvhsqantq*svlnrlqqqqqqqqyqqlhiqqqqqqyqqvlqlhlqqmeiqlvvei
vvvvvelnhqqlhicfpl*vlhllplhhhhqlqlqlqlqlhllplhhhhqlqlqlqlqlq
lqlhllhqllaelvvqlvk*lqtqv**lvi*qihhifsamvxxx---

---XXXXYANKFIXXSGXSIXXSIXSVXVCKXXWQYDPSSTTXTXEXGPLPNXSISNFXF
XSTFYXTFILLTIFQXXLIX*klk*******xkkkknixxdcvynnk

Frame C:
*mdvxnfys*tr*mlnnwcmwffvcqsni*fihg*fyckyv*rkyv*m**syarqfynf*
lwiw*fiprpilnkvy*tvcnnsnnnnninnftfnnnnnninkfynfiynkwkyn**wr*
w*wwwn*iinnctfvflfkfyifflyitttnynfnynfnyifflyitttnysfnysfnyn
fnyiffinywrs*wcnl*nnfklkfns*lyskytiysvqwfxxx---

---xxxxtlinssixqxxlsnxxlxvxkfakxxgnmtxlqlpqplkxxxyxixqfxisis
fqpftlxlyy*lffxix*sfen*nnnnnnnxlkkkkixlptvyiiin
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09672-1 (Contig-U09672-1Q)
/CSM_Contig/Contig-U09672-1Q.Seq.d
         (998 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09672-1 (Contig-U09672-1Q) /CSM_Contig/Conti...   704  0.0
Contig-U04014-1 (Contig-U04014-1Q) /CSM_Contig/Conti...    50  5e-06
Contig-U04460-1 (Contig-U04460-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U05245-1 (Contig-U05245-1Q) /CSM_Contig/Conti...    46  7e-05
Contig-U09753-1 (Contig-U09753-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U02963-1 (Contig-U02963-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13316-1 (Contig-U13316-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12503-1 (Contig-U12503-1Q) /CSM_Contig/Conti...    40  0.005

>Contig-U09672-1 (Contig-U09672-1Q) /CSM_Contig/Contig-U09672-1Q.Seq.d
          Length = 998

 Score =  704 bits (355), Expect = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Plus

                                                                       
Query: 311 gttctacaacttcatctacaacaaatggaaatacaattagtagtggagatagtggtagtg 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gttctacaacttcatctacaacaaatggaaatacaattagtagtggagatagtggtagtg 370

                                                                       
Query: 371 gtggtggaactaaatcatcaacaactgcacatttgttttcctctttaagttctacatctt 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtggtggaactaaatcatcaacaactgcacatttgttttcctctttaagttctacatctt 430

                                                                       
Query: 431 cttcctctacatcaccaccaccaactacaacttcaactacaacttcaactacatcttctt 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cttcctctacatcaccaccaccaactacaacttcaactacaacttcaactacatcttctt 490

                                                                       
Query: 491 cctctacatcaccaccaccaactacagcttcaactacagcttcaactacaacttcaacta 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cctctacatcaccaccaccaactacagcttcaactacagcttcaactacaacttcaacta 550

                                                                       
Query: 551 catcttcttcatcaactactggcggagttagtggtgcaacttgtgaaataacttcaaact 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 catcttcttcatcaactactggcggagttagtggtgcaacttgtgaaataacttcaaact 610

                                                                  
Query: 611 caagtttaatagttagttatatagcaaatacaccatatattcagtgcaatggttc 665
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caagtttaatagttagttatatagcaaatacaccatatattcagtgcaatggttc 665


 Score =  470 bits (237), Expect = e-132
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaatggatgtgatnaacttttacagctgaactagataaatgctcaacaattggtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttaaatggatgtgatnaacttttacagctgaactagataaatgctcaacaattggtgca 60

                                                                       
Query: 61  tgtggtttttcgtatgccaaagtaacatatgattcattcatgggtgattttactgtaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtggtttttcgtatgccaaagtaacatatgattcattcatgggtgattttactgtaaat 120

                                                                       
Query: 121 atgtataaagaaaatatgtttagatgtaatgaagctatgccagacaattttataattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgtataaagaaaatatgtttagatgtaatgaagctatgccagacaattttataattttt 180

                                                                       
Query: 181 gattgtggatctggtagttcattcccaggccaatactcaataaagtgtattaaaccgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gattgtggatctggtagttcattcccaggccaatactcaataaagtgtattaaaccgtct 240


 Score =  278 bits (140), Expect = 1e-74
 Identities = 221/221 (100%)
 Strand = Plus / Plus

                                                                       
Query: 698 tacgctaataaattcatcnattgntcaggnanatctatcnaatgntcnattganagtgtt 757
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tacgctaataaattcatcnattgntcaggnanatctatcnaatgntcnattganagtgtt 757

                                                                       
Query: 758 naagtttgcaaagnacnttggcaatatgacccntcttcaactaccncaaccnctgaagnt 817
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 naagtttgcaaagnacnttggcaatatgacccntcttcaactaccncaaccnctgaagnt 817

                                                                       
Query: 818 ggnccnttaccnaatcnttcaatttcnaatttcnatttcntttcaaccttttacnttacn 877
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ggnccnttaccnaatcnttcaatttcnaatttcnatttcntttcaaccttttacnttacn 877

                                                    
Query: 878 tttatattattaactatttttcaanatcntttaatcntttg 918
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tttatattattaactatttttcaanatcntttaatcntttg 918


 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 967 tattnctnccgactgtgtatataataataaat 998
           ||||||||||||||||||||||||||||||||
Sbjct: 967 tattnctnccgactgtgtatataataataaat 998


>Contig-U04014-1 (Contig-U04014-1Q) /CSM_Contig/Contig-U04014-1Q.Seq.d
          Length = 400

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 426 atcttcttcctctacatcaccaccaccaactacaacttcaactacaact 474
           ||||||| |||| ||| || ||||||||||| ||||||||||| |||||
Sbjct: 240 atcttctacctcaacaacaacaccaccaacttcaacttcaacttcaact 288


 Score = 38.2 bits (19), Expect = 0.018
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 483 atcttcttcctctacatcaccaccaccaactacagcttcaact 525
           ||||||| |||| ||| || ||||||||||| || ||||||||
Sbjct: 240 atcttctacctcaacaacaacaccaccaacttcaacttcaact 282


 Score = 38.2 bits (19), Expect = 0.018
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 458 caacttcaactacaacttcaact 480
           ||||||||||| |||||||||||
Sbjct: 266 caacttcaacttcaacttcaact 288


 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 530 cttcaactacaacttcaact 549
           |||||||| |||||||||||
Sbjct: 269 cttcaacttcaacttcaact 288


>Contig-U04460-1 (Contig-U04460-1Q) /CSM_Contig/Contig-U04460-1Q.Seq.d
          Length = 396

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 452 caactacaacttcaactacaacttcaactaca 483
           ||||||||||| ||||||||||| ||||||||
Sbjct: 149 caactacaactacaactacaactacaactaca 180


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 452 caactacaacttcaactacaacttcaactaca 483
           ||||||||||| ||||||||||| ||||||||
Sbjct: 137 caactacaactacaactacaactacaactaca 168


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 509 caactacagcttcaactacagcttcaactacaacttcaactaca 552
           |||||||| || |||||||| || ||||||||||| ||||||||
Sbjct: 131 caactacaactacaactacaactacaactacaactacaactaca 174


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 509 caactacagcttcaactacagcttcaactacaacttcaactaca 552
           |||||||| || |||||||| || ||||||||||| ||||||||
Sbjct: 155 caactacaactacaactacaactacaactacaactacaactaca 198


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 452 caactacaacttcaactacaacttcaactaca 483
           ||||||||||| ||||||||||| ||||||||
Sbjct: 131 caactacaactacaactacaactacaactaca 162


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 509 caactacagcttcaactacagcttcaactacaacttcaactaca 552
           |||||||| || |||||||| || ||||||||||| ||||||||
Sbjct: 149 caactacaactacaactacaactacaactacaactacaactaca 192


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 452 caactacaacttcaactacaacttcaactaca 483
           ||||||||||| ||||||||||| ||||||||
Sbjct: 143 caactacaactacaactacaactacaactaca 174


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 452 caactacaacttcaactacaacttcaactaca 483
           ||||||||||| ||||||||||| ||||||||
Sbjct: 155 caactacaactacaactacaactacaactaca 186


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 509 caactacagcttcaactacagcttcaactacaacttcaactaca 552
           |||||||| || |||||||| || ||||||||||| ||||||||
Sbjct: 137 caactacaactacaactacaactacaactacaactacaactaca 180


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 452 caactacaacttcaactacaacttcaactaca 483
           ||||||||||| ||||||||||| ||||||||
Sbjct: 167 caactacaactacaactacaactacaactaca 198


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 509 caactacagcttcaactacagcttcaactacaacttcaactaca 552
           |||||||| || |||||||| || ||||||||||| ||||||||
Sbjct: 167 caactacaactacaactacaactacaactacaactgcaactaca 210


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 452 caactacaacttcaactacaacttcaactaca 483
           ||||||||||| ||||||||||| ||||||||
Sbjct: 179 caactacaactacaactacaactgcaactaca 210


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 452 caactacaacttcaactacaacttcaactaca 483
           ||||||||||| ||||||||||| ||||||||
Sbjct: 161 caactacaactacaactacaactacaactaca 192


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 509 caactacagcttcaactacagcttcaactacaacttcaactaca 552
           |||||||| || |||||||| || ||||||||||| ||||||||
Sbjct: 143 caactacaactacaactacaactacaactacaactacaactaca 186


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 509 caactacagcttcaactacagcttcaactacaacttcaact 549
           |||||||| || |||||||| || ||||||||||| |||||
Sbjct: 161 caactacaactacaactacaactacaactacaactacaact 201


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 452 caactacaacttcaactacaacttcaact 480
           ||||||||||| ||||||||||| |||||
Sbjct: 173 caactacaactacaactacaactacaact 201


 Score = 40.1 bits (20), Expect = 0.005
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 452 caactacaacttcaactacaacttcaactaca 483
           |||| |||||| ||||||||||| ||||||||
Sbjct: 125 caacaacaactacaactacaactacaactaca 156


 Score = 36.2 bits (18), Expect = 0.070
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 452 caactacaacttcaactacaac 473
           ||||||||||| ||||||||||
Sbjct: 191 caactacaactgcaactacaac 212


 Score = 32.2 bits (16), Expect = 1.1
 Identities = 25/28 (89%)
 Strand = Plus / Plus

                                       
Query: 452 caactacaacttcaactacaacttcaac 479
           ||||||||||| ||||| ||||| ||||
Sbjct: 185 caactacaactacaactgcaactacaac 212


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,127
Number of Sequences: 6905
Number of extensions: 13127
Number of successful extensions: 1840
Number of sequences better than 10.0: 257
length of query: 998
length of database: 5,674,871
effective HSP length: 16
effective length of query: 982
effective length of database: 5,564,391
effective search space: 5464231962
effective search space used: 5464231962
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09672-1 (Contig-U09672-1Q) /CSM_Contig/Contig-U09672-1Q.Seq.d
         (998 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ414576) Dictyostelium discoideum cDNA clone:ddv19m18, 5' ...   630   0.0    2
(BJ432750) Dictyostelium discoideum cDNA clone:ddv19m18, 3' ...   278   5e-78  2
(EJ149836) 1092343752192 Global-Ocean-Sampling_GS-27-01-01-1...    48   2e-12  3
(AL672127) Mouse DNA sequence from clone RP23-370O18 on chro...    54   2e-11  2
(EB316018) CNSN01-F-081637-501 Normalized CNS library (juven...    54   7e-11  2
(EJ491764) 1095403543826 Global-Ocean-Sampling_GS-28-01-01-1...    48   1e-10  3
(AC107267) Rattus norvegicus clone CH230-25D17, *** SEQUENCI...    56   8e-10  2
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    48   9e-10  2
(AL271780) Tetraodon nigroviridis genome survey sequence T7 ...    50   1e-09  2
(EJ482789) 1095403480497 Global-Ocean-Sampling_GS-28-01-01-1...    48   1e-09  2
(EK142369) 1095454143602 Global-Ocean-Sampling_GS-31-01-01-1...    48   1e-09  2
(AU072741) Dictyostelium discoideum slug cDNA, clone SSA735.       48   1e-09  2
(AC154740) Mus musculus BAC clone RP23-118I16 from chromosom...    48   3e-09  2
(AC174677) Mus musculus chromosome 9 clone RP23-91P20, WORKI...    48   3e-09  2
(EL697065) CF_WO0_30a10_SP6 Copepod Whole Organism, Normaliz...    56   1e-08  2
(AU037004) Dictyostelium discoideum slug cDNA, clone SSA735.       48   6e-08  2
(EJ481725) 1095403472651 Global-Ocean-Sampling_GS-28-01-01-1...    52   2e-07  2
(EK587277) 1095522119954 Global-Ocean-Sampling_GS-32-01-01-1...    44   8e-07  2
(EK578231) 1095521377412 Global-Ocean-Sampling_GS-32-01-01-1...    44   8e-07  2
(ER444816) 1092963825735 Global-Ocean-Sampling_GS-35-01-01-1...    46   3e-06  2
(AC122076) Rattus norvegicus clone CH230-277E22, *** SEQUENC...    48   9e-06  2
(AC160457) Mus musculus chromosome 3 clone RP23-352D18 map 3...    48   1e-05  2
(AC102934) Mus musculus chromosome 3, clone RP24-209C11, com...    48   1e-05  2
(AZ556585) RPCI-23-212M15.TJ RPCI-23 Mus musculus genomic cl...    48   1e-05  2
(AC156553) Mus musculus chromosome 8, clone RP23-106I21, com...    28   3e-05  4
(AC112599) Rattus norvegicus clone CH230-112A20, *** SEQUENC...    48   4e-05  2
(AC136541) Rattus norvegicus clone CH230-287A11, *** SEQUENC...    48   4e-05  2
(EK385623) 1095469481630 Global-Ocean-Sampling_GS-31-01-01-1...    62   4e-05  1
(EK249953) 1095460274772 Global-Ocean-Sampling_GS-31-01-01-1...    48   4e-05  2
(CR380957) Candida glabrata strain CBS138 chromosome K compl...    48   1e-04  2
(EJ781820) 1093017261937 Global-Ocean-Sampling_GS-30-02-01-1...    48   2e-04  2
(BJ385820) Dictyostelium discoideum cDNA clone:ddc56c09, 3' ...    48   2e-04  2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    48   3e-04  8
(AU053307) Dictyostelium discoideum slug cDNA, clone SLI364.       48   3e-04  2
(AU061283) Dictyostelium discoideum slug cDNA, clone SLD675.       48   3e-04  2
(AU052175) Dictyostelium discoideum slug cDNA, clone SLA173.       48   3e-04  2
(AU054091) Dictyostelium discoideum slug cDNA, clone SLK582.       48   3e-04  2
(AU052245) Dictyostelium discoideum slug cDNA, clone SLA416.       48   3e-04  2
(AU040035) Dictyostelium discoideum slug cDNA, clone SLH495.       48   3e-04  2
(BJ399133) Dictyostelium discoideum cDNA clone:dds4g07, 3' e...    48   3e-04  2
(AU053922) Dictyostelium discoideum slug cDNA, clone SLK165.       48   3e-04  2
(AU052322) Dictyostelium discoideum slug cDNA, clone SLD142.       48   3e-04  2
(AU053343) Dictyostelium discoideum slug cDNA, clone SLI431.       48   3e-04  2
(AU052199) Dictyostelium discoideum slug cDNA, clone SLA224.       48   4e-04  2
(AU039854) Dictyostelium discoideum slug cDNA, clone SLG594.       48   4e-04  2
(BJ372892) Dictyostelium discoideum cDNA clone:ddc14f21, 3' ...    48   4e-04  2
(AU052384) Dictyostelium discoideum slug cDNA, clone SLD230.       48   4e-04  2
(BJ398588) Dictyostelium discoideum cDNA clone:dds1i01, 3' e...    48   4e-04  2
(AU040062) Dictyostelium discoideum slug cDNA, clone SLA340.       48   4e-04  2
(AU061525) Dictyostelium discoideum slug cDNA, clone SLE554.       48   4e-04  2
(AU052771) Dictyostelium discoideum slug cDNA, clone SLK620.       48   5e-04  2
(AU033673) Dictyostelium discoideum slug cDNA, clone SLB296.       48   5e-04  2
(BJ374990) Dictyostelium discoideum cDNA clone:ddc17d06, 3' ...    48   5e-04  2
(AU036922) Dictyostelium discoideum slug cDNA, clone SSB820.       48   5e-04  2
(AU034239) Dictyostelium discoideum slug cDNA, clone SLC311.       48   5e-04  2
(AU052966) Dictyostelium discoideum slug cDNA, clone SLF396.       48   5e-04  2
(AU039641) Dictyostelium discoideum slug cDNA, clone SLE888.       48   5e-04  2
(AU053398) Dictyostelium discoideum slug cDNA, clone SLI557.       48   5e-04  2
(AU034057) Dictyostelium discoideum slug cDNA, clone SLB864.       48   5e-04  2
(AU033607) Dictyostelium discoideum slug cDNA, clone SLB224.       48   5e-04  2
(AU052266) Dictyostelium discoideum slug cDNA, clone SLA472.       48   5e-04  2
(AU052240) Dictyostelium discoideum slug cDNA, clone SLA407.       48   5e-04  2
(CU041272) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   5e-04  2
(AU061819) Dictyostelium discoideum slug cDNA, clone SLG229.       48   5e-04  2
(AU052178) Dictyostelium discoideum slug cDNA, clone SLA183.       48   5e-04  2
(AU039413) Dictyostelium discoideum slug cDNA, clone SLH738.       48   5e-04  2
(AU033469) Dictyostelium discoideum slug cDNA, clone SLA865.       48   5e-04  2
(BJ383690) Dictyostelium discoideum cDNA clone:ddc53m21, 3' ...    48   5e-04  2
(AU053262) Dictyostelium discoideum slug cDNA, clone SLI263.       48   5e-04  2
(AU052228) Dictyostelium discoideum slug cDNA, clone SLA279.       48   5e-04  2
(AU034078) Dictyostelium discoideum slug cDNA, clone SLB889.       48   5e-04  2
(AU033502) Dictyostelium discoideum slug cDNA, clone SLB107.       48   5e-04  2
(AU034176) Dictyostelium discoideum slug cDNA, clone SLC144.       48   5e-04  2
(AU033450) Dictyostelium discoideum slug cDNA, clone SLA841.       48   5e-04  2
(AU033594) Dictyostelium discoideum slug cDNA, clone SLB210.       48   5e-04  2
(AU039267) Dictyostelium discoideum slug cDNA, clone SLH314.       48   5e-04  2
(AU034754) Dictyostelium discoideum slug cDNA, clone SLE278.       48   5e-04  2
(AU033712) Dictyostelium discoideum slug cDNA, clone SLB347.       48   6e-04  2
(BJ372981) Dictyostelium discoideum cDNA clone:ddc15p01, 3' ...    48   6e-04  2
(AU033861) Dictyostelium discoideum slug cDNA, clone SLB532.       48   6e-04  2
(AU033708) Dictyostelium discoideum slug cDNA, clone SLB343.       48   6e-04  2
(AU052278) Dictyostelium discoideum slug cDNA, clone SLA494.       48   6e-04  2
(AU052216) Dictyostelium discoideum slug cDNA, clone SLA261.       48   6e-04  2
(BJ374148) Dictyostelium discoideum cDNA clone:ddc6a21, 3' e...    48   6e-04  2
(BJ399908) Dictyostelium discoideum cDNA clone:dds8b03, 3' e...    48   6e-04  2
(BJ372906) Dictyostelium discoideum cDNA clone:ddc14l20, 3' ...    48   6e-04  2
(AU033659) Dictyostelium discoideum slug cDNA, clone SLB278.       48   6e-04  2
(AU033778) Dictyostelium discoideum slug cDNA, clone SLB428.       48   6e-04  2
(AU052280) Dictyostelium discoideum slug cDNA, clone SLA496.       48   6e-04  2
(AU052173) Dictyostelium discoideum slug cDNA, clone SLA170.       48   6e-04  2
(AU034132) Dictyostelium discoideum slug cDNA, clone SLB780.       48   6e-04  2
(AU034708) Dictyostelium discoideum slug cDNA, clone SLE218.       48   6e-04  2
(AU033787) Dictyostelium discoideum slug cDNA, clone SLB438.       48   6e-04  2
(AU040025) Dictyostelium discoideum slug cDNA, clone SLH472.       48   6e-04  2
(AU033409) Dictyostelium discoideum slug cDNA, clone SLA734.       48   6e-04  2
(ES584540) EST 0075 Bark cDNA library of ramie (Boehmeria ni...    48   6e-04  2
(AU202436) Caenorhabditis elegans cDNA clone:yk808e03 : 5' e...    44   6e-04  2
(AU205979) Caenorhabditis elegans cDNA clone:yk857e10 : 5' e...    44   6e-04  2
(AU033617) Dictyostelium discoideum slug cDNA, clone SLB234.       48   6e-04  2
(AU039989) Dictyostelium discoideum slug cDNA, clone SLH386.       48   6e-04  2

>(BJ414576) Dictyostelium discoideum cDNA clone:ddv19m18, 5' end,
           single read.
          Length = 665

 Score =  630 bits (318), Expect(2) = 0.0
 Identities = 318/318 (100%)
 Strand = Plus / Plus


Query: 348 tagtagtggagatagtggtagtggtggtggaactaaatcatcaacaactgcacatttgtt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tagtagtggagatagtggtagtggtggtggaactaaatcatcaacaactgcacatttgtt 407


Query: 408 ttcctctttaagttctacatcttcttcctctacatcaccaccaccaactacaacttcaac 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttcctctttaagttctacatcttcttcctctacatcaccaccaccaactacaacttcaac 467


Query: 468 tacaacttcaactacatcttcttcctctacatcaccaccaccaactacagcttcaactac 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tacaacttcaactacatcttcttcctctacatcaccaccaccaactacagcttcaactac 527


Query: 528 agcttcaactacaacttcaactacatcttcttcatcaactactggcggagttagtggtgc 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agcttcaactacaacttcaactacatcttcttcatcaactactggcggagttagtggtgc 587


Query: 588 aacttgtgaaataacttcaaactcaagtttaatagttagttatatagcaaatacaccata 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aacttgtgaaataacttcaaactcaagtttaatagttagttatatagcaaatacaccata 647


Query: 648 tattcagtgcaatggttc 665
           ||||||||||||||||||
Sbjct: 648 tattcagtgcaatggttc 665

 Score =  472 bits (238), Expect(2) = 0.0
 Identities = 241/241 (100%)
 Strand = Plus / Plus


Query: 1   tttaaatggatgtgatnaacttttacagctgaactagataaatgctcaacaattggtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttaaatggatgtgatnaacttttacagctgaactagataaatgctcaacaattggtgca 60


Query: 61  tgtggtttttcgtatgccaaagtaacatatgattcattcatgggtgattttactgtaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtggtttttcgtatgccaaagtaacatatgattcattcatgggtgattttactgtaaat 120


Query: 121 atgtataaagaaaatatgtttagatgtaatgaagctatgccagacaattttataattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgtataaagaaaatatgtttagatgtaatgaagctatgccagacaattttataattttt 180


Query: 181 gattgtggatctggtagttcattcccaggccaatactcaataaagtgtattaaaccgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gattgtggatctggtagttcattcccaggccaatactcaataaagtgtattaaaccgtct 240


Query: 241 g 241
           |
Sbjct: 241 g 241

 Score =  109 bits (55), Expect(2) = 7e-21
 Identities = 64/67 (95%)
 Strand = Plus / Plus


Query: 479 ctacatcttcttcctctacatcaccaccaccaactacagcttcaactacagcttcaacta 538
           |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 422 ctacatcttcttcctctacatcaccaccaccaactacaacttcaactacaacttcaacta 481


Query: 539 caacttc 545
           || ||||
Sbjct: 482 catcttc 488

 Score = 30.2 bits (15), Expect(2) = 7e-21
 Identities = 18/19 (94%)
 Strand = Plus / Plus


Query: 455 ctacaacttcaactacaac 473
           ||||||||||| |||||||
Sbjct: 314 ctacaacttcatctacaac 332

 Score =  109 bits (55), Expect = 2e-19
 Identities = 64/67 (95%)
 Strand = Plus / Plus


Query: 422 ctacatcttcttcctctacatcaccaccaccaactacaacttcaactacaacttcaacta 481
           |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 479 ctacatcttcttcctctacatcaccaccaccaactacagcttcaactacagcttcaacta 538


Query: 482 catcttc 488
           || ||||
Sbjct: 539 caacttc 545

 Score = 58.0 bits (29), Expect(2) = 7e-11
 Identities = 35/37 (94%)
 Strand = Plus / Plus


Query: 521 caactacagcttcaactacaacttcaactacatcttc 557
           |||||||||||||||||||| ||||||||||| ||||
Sbjct: 509 caactacagcttcaactacagcttcaactacaacttc 545

 Score = 58.0 bits (29), Expect(2) = 7e-11
 Identities = 35/37 (94%)
 Strand = Plus / Plus


Query: 509 caactacagcttcaactacagcttcaactacaacttc 545
           |||||||||||||||||||| ||||||||||| ||||
Sbjct: 521 caactacagcttcaactacaacttcaactacatcttc 557

 Score = 42.1 bits (21), Expect(2) = 7e-11
 Identities = 24/25 (96%)
 Strand = Plus / Plus


Query: 464 caactacaacttcaactacatcttc 488
           |||||||||||||||||||| ||||
Sbjct: 452 caactacaacttcaactacaacttc 476

 Score = 42.1 bits (21), Expect(2) = 7e-11
 Identities = 24/25 (96%)
 Strand = Plus / Plus


Query: 452 caactacaacttcaactacaacttc 476
           |||||||||||||||||||| ||||
Sbjct: 464 caactacaacttcaactacatcttc 488

 Score = 71.9 bits (36), Expect(2) = 1e-08
 Identities = 39/40 (97%)
 Strand = Plus / Plus


Query: 521 caactacagcttcaactacaacttcaactacatcttcttc 560
           |||||||| |||||||||||||||||||||||||||||||
Sbjct: 452 caactacaacttcaactacaacttcaactacatcttcttc 491

 Score = 26.3 bits (13), Expect(2) = 1e-08
 Identities = 16/17 (94%)
 Strand = Plus / Plus


Query: 467 ctacaacttcaactaca 483
           ||||||||||| |||||
Sbjct: 314 ctacaacttcatctaca 330

 Score = 71.9 bits (36), Expect = 4e-08
 Identities = 39/40 (97%)
 Strand = Plus / Plus


Query: 452 caactacaacttcaactacaacttcaactacatcttcttc 491
           |||||||| |||||||||||||||||||||||||||||||
Sbjct: 521 caactacagcttcaactacaacttcaactacatcttcttc 560

 Score = 34.2 bits (17), Expect(2) = 0.13
 Identities = 23/25 (92%)
 Strand = Plus / Plus


Query: 509 caactacagcttcaactacagcttc 533
           |||||||| ||||||||||| ||||
Sbjct: 464 caactacaacttcaactacatcttc 488

 Score = 34.2 bits (17), Expect(2) = 0.13
 Identities = 23/25 (92%)
 Strand = Plus / Plus


Query: 464 caactacaacttcaactacatcttc 488
           |||||||| ||||||||||| ||||
Sbjct: 509 caactacagcttcaactacagcttc 533

 Score = 34.2 bits (17), Expect(2) = 0.13
 Identities = 23/25 (92%)
 Strand = Plus / Plus


Query: 533 caactacaacttcaactacatcttc 557
           |||||||| ||||||||||| ||||
Sbjct: 509 caactacagcttcaactacagcttc 533

 Score = 34.2 bits (17), Expect(2) = 0.13
 Identities = 23/25 (92%)
 Strand = Plus / Plus


Query: 509 caactacagcttcaactacagcttc 533
           |||||||| ||||||||||| ||||
Sbjct: 533 caactacaacttcaactacatcttc 557

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 774,488,603
Number of extensions: 54195083
Number of successful extensions: 4791915
Number of sequences better than 10.0: 701
Length of query: 998
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 974
Effective length of database: 97,308,875,965
Effective search space: 94778845189910
Effective search space used: 94778845189910
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09672-1 (Contig-U09672-1Q) /CSM_Contig/Contig-U09672-1Q.Seq.d
         (998 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 737,193,984
Number of extensions: 13556596
Number of successful extensions: 18630
Number of sequences better than 10.0: 0
Number of HSP's gapped: 18615
Number of HSP's successfully gapped: 0
Length of query: 332
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 203
Effective length of database: 627,614,014
Effective search space: 127405644842
Effective search space used: 127405644842
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U09672-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0