Contig-U09640-1
Contig ID Contig-U09640-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09640-1 (Contig-U09640-1Q) /CSM_Contig/Contig-U09640-1Q.Seq.d
ACTGTTGGCCTACTGGNAAAAAATAGTGTAATAATAACCAACAATGAAAT
TATTTATTTTAATTATTTTATCCATTTGTTTGGCTTTAGTAAATTCCCAA
CAAGGTGTTTACCCAGATAGTGGTGTTTATGTTTCATTAAATTCAAATTT
TTTAGCTACTTTTGGTAATGAATTTACTCAAACAATTCAAAATCAAATTA
ATTCATATCCAGTTGCAAATGTTGATGGTAAAACTGGTAAAGTTAGTTAC
TCTGTAACTAATATTCAACAATCAGTACAACTTGGAGATTTCTTTTTTCA
ACAAACAGGTGTAAACACTTATAATATTGGTTGGAATAGTGTTACATTTA
CAATTACAACCGATTATCAAGGTTGTTATAAAATTGGTGGTCTTAAAAAA
TTATCAATTTGTGAAAAAGGTGATATCAAAATTAACTCTCAAGCAACTTT
ATCATTATCGATTGCAATGACCATTGATTTCACTCAATCAACTCCAACCA
TCTCTTGTTCTTCTACAACCTTGAATGTACCTGCAAATGGTATAAACTAT
AATGTTCATTGTTCAAGTAAAGTTTGTGATAAAACTCATGATATTACAAA
TGAAATTGCTTCTAAATTTGTACCATCAGTTGAATCTGGTA---------
-ATCCAACTCAATCACCAAGTTCATTACCAAGTGAGGAGGCAGTTGAAGA
TTTTCAAACTGATATTGCAGGTAACATTGACACCATACTTGTTTGAGTCA
TTGGTAGATGCAATGTTTGAATCAGCCTTACCAATGACAATTACACCATC
TGAAGTACCATCAGAATCACCAGTTCATTTAAATACTTCTGATCCATTCT
TTAATCAAACTGCACCTGGATTAACTGGTAAATATCCAAATTCTCCAATT
GATGTTGAAATTATTTCACCATCATCATCAAGTCAAACCATGGTATCAAT
TAATTCAACTGGTGTTTTAGTTGGTTTACATTCAATTCCAGTTAATTTCA
TTGTAAATGATGAAACAGTTTTTCAAATTCTATTCAATTTTAATATTGAA
TTAACACCAGCTTTATCTCAATCCTCTAATGGTATTAGTGTAACTGGTAC
ACTTGATAAATTAGATGCTTTGGTTACAGTTGGTTCAACAAGTGTTGGTG
ATATTGATGTTTCAGGTTTTGTTCAATTAATTGAATTAGCTCAAGGTTTA
GTTAAAATTCCAACCATTACAATTCAAAATCCTTTAACAACTTATTCACT
CTCTGATTTATCTTTATCAATTGGTGATCAATATATTCAAATTTTAGGTA
ATCTTCAACAACAACAACAACAACAACAAAAACAAAAACAAATTTTAATT
AAATAAAATAATAATATAAAATATAATA

Gap gap included
Contig length 1368
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 219988
End point 218635
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U09640
List of clone(s)

est1=VFH669F,1,610
est2=VFI496F,18,641
est3=VFH669Z,642,1363
est4=VFI496Z,687,1369
est5=FC-IC1138F,797,1088
Translated Amino Acid sequence
llaywxkiv***PTMKLFILIILSICLALVNSQQGVYPDSGVYVSLNSNFLATFGNEFTQ
TIQNQINSYPVANVDGKTGKVSYSVTNIQQSVQLGDFFFQQTGVNTYNIGWNSVTFTITT
DYQGCYKIGGLKKLSICEKGDIKINSQATLSLSIAMTIDFTQSTPTISCSSTTLNVPANG
INYNVHCSSKVCDKTHDITNEIASKFVPSVESG---

---IQLNHQVHYQVRRQLKIFKLILQVTLTPYLFESLVDAMFESALPMTITPSEVPSESP
VHLNTSDPFFNQTAPGLTGKYPNSPIDVEIISPSSSSQTMVSINSTGVLVGLHSIPVNFI
VNDETVFQILFNFNIELTPALSQSSNGISVTGTLDKLDALVTVGSTSVGDIDVSGFVQLI
ELAQGLVKIPTITIQNPLTTYSLSDLSLSIGDQYIQILGNLQQQQQQQQKQKQILIK*nn
nikyn


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxknsviitnneiiyfnyfihlfgfskfptrclpr*wclcfikfkffsyfw**iys
nnsksn*fissckc*w*nw*s*llcn*ystisttwrflfstnrckhl*ywle*cyiynyn
rlsrll*nwws*kiinl*kr*yqn*lssnfiiidcndh*fhsinsnhllffynlectckw
ykl*cslfk*sl**ns*yyk*ncf*ictis*iw---

---IQLNHQVHYQVRRQLKIFKLILQVTLTPYLFESLVDAMFESALPMTITPSEVPSESP
VHLNTSDPFFNQTAPGLTGKYPNSPIDVEIISPSSSSQTMVSINSTGVLVGLHSIPVNFI
VNDETVFQILFNFNIELTPALSQSSNGISVTGTLDKLDALVTVGSTSVGDIDVSGFVQLI
ELAQGLVKIPTITIQNPLTTYSLSDLSLSIGDQYIQILGNLQQQQQQQQKQKQILIK*nn
nikyn

Frame B:
llaywxkiv***PTMKLFILIILSICLALVNSQQGVYPDSGVYVSLNSNFLATFGNEFTQ
TIQNQINSYPVANVDGKTGKVSYSVTNIQQSVQLGDFFFQQTGVNTYNIGWNSVTFTITT
DYQGCYKIGGLKKLSICEKGDIKINSQATLSLSIAMTIDFTQSTPTISCSSTTLNVPANG
INYNVHCSSKVCDKTHDITNEIASKFVPSVESG---

---snsitkfitk*ggs*rfsn*ycr*h*hhtclshw*mqclnqpyq*qlhhlkyhqnhq
fi*illihsliklhld*lvniqilqlmlklfhhhhqvkpwyqliqlvf*lvyiqfqlisl
*mmkqffkfysililn*hqlylnplmvlv*lvhlin*mlwlqlvqqvlvilmfqvlfn*l
n*lkv*lkfqplqfkil*qlihsliylyqlvinifkf*vifnnnnnnnknknkf*lnkii
i*nii

Frame C:
cwptgkk*cnnnqq*nylf*lfypfvwl**ipnkvftqivvfmfh*iqif*lllvmnllk
qfkiklihiqlqmlmvklvklvtl*lifnnqynleisffnkqv*tliilvgivlhlqlqp
iikvviklvvlknyqfvkkviskltlkqlyhyrlq*plislnqlqpslvllqp*mylqmv
*timfivqvkfviklmilqmklllnlyhqlnlv---

---ptqspsslpseeavedfqtdiagnidtilv*vigrcnv*isltndnyti*stirits
sfkyf*sil*snctwinw*iskfsn*c*nyftiiiksnhgin*fnwcfswftfnss*fhc
k**nsfsnsiqf*y*intsfisil*wy*cnwyt**ircfgyswfnkcw*y*cfrfcsin*
issrfs*nsnhynsksfnnlftl*fifinw*siysnfr*sstttttttktktnfn*ik**
yki*

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09640-1 (Contig-U09640-1Q)
/CSM_Contig/Contig-U09640-1Q.Seq.d
(1378 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09640-1 (Contig-U09640-1Q) /CSM_Contig/Conti... 2522 0.0
Contig-U08895-1 (Contig-U08895-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U08192-1 (Contig-U08192-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U14169-1 (Contig-U14169-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U12287-1 (Contig-U12287-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U09714-1 (Contig-U09714-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U13706-1 (Contig-U13706-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U10858-1 (Contig-U10858-1Q) /CSM_Contig/Conti... 42 0.002

>Contig-U09640-1 (Contig-U09640-1Q) /CSM_Contig/Contig-U09640-1Q.Seq.d
Length = 1378

Score = 2522 bits (1272), Expect = 0.0
Identities = 1305/1305 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggnaaaaaatagtgtaataataaccaacaatgaaattatttatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggnaaaaaatagtgtaataataaccaacaatgaaattatttatttt 60


Query: 61 aattattttatccatttgtttggctttagtaaattcccaacaaggtgtttacccagatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattattttatccatttgtttggctttagtaaattcccaacaaggtgtttacccagatag 120


Query: 121 tggtgtttatgtttcattaaattcaaattttttagctacttttggtaatgaatttactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtgtttatgtttcattaaattcaaattttttagctacttttggtaatgaatttactca 180


Query: 181 aacaattcaaaatcaaattaattcatatccagttgcaaatgttgatggtaaaactggtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacaattcaaaatcaaattaattcatatccagttgcaaatgttgatggtaaaactggtaa 240


Query: 241 agttagttactctgtaactaatattcaacaatcagtacaacttggagatttcttttttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agttagttactctgtaactaatattcaacaatcagtacaacttggagatttcttttttca 300


Query: 301 acaaacaggtgtaaacacttataatattggttggaatagtgttacatttacaattacaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acaaacaggtgtaaacacttataatattggttggaatagtgttacatttacaattacaac 360


Query: 361 cgattatcaaggttgttataaaattggtggtcttaaaaaattatcaatttgtgaaaaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cgattatcaaggttgttataaaattggtggtcttaaaaaattatcaatttgtgaaaaagg 420


Query: 421 tgatatcaaaattaactctcaagcaactttatcattatcgattgcaatgaccattgattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgatatcaaaattaactctcaagcaactttatcattatcgattgcaatgaccattgattt 480


Query: 481 cactcaatcaactccaaccatctcttgttcttctacaaccttgaatgtacctgcaaatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cactcaatcaactccaaccatctcttgttcttctacaaccttgaatgtacctgcaaatgg 540


Query: 541 tataaactataatgttcattgttcaagtaaagtttgtgataaaactcatgatattacaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tataaactataatgttcattgttcaagtaaagtttgtgataaaactcatgatattacaaa 600


Query: 601 tgaaattgcttctaaatttgtaccatcagttgaatctggtannnnnnnnnnatccaactc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgaaattgcttctaaatttgtaccatcagttgaatctggtannnnnnnnnnatccaactc 660


Query: 661 aatcaccaagttcattaccaagtgaggaggcagttgaagattttcaaactgatattgcag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aatcaccaagttcattaccaagtgaggaggcagttgaagattttcaaactgatattgcag 720


Query: 721 gtaacattgacaccatacttgtttgagtcattggtagatgcaatgtttgaatcagcctta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gtaacattgacaccatacttgtttgagtcattggtagatgcaatgtttgaatcagcctta 780


Query: 781 ccaatgacaattacaccatctgaagtaccatcagaatcaccagttcatttaaatacttct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ccaatgacaattacaccatctgaagtaccatcagaatcaccagttcatttaaatacttct 840


Query: 841 gatccattctttaatcaaactgcacctggattaactggtaaatatccaaattctccaatt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gatccattctttaatcaaactgcacctggattaactggtaaatatccaaattctccaatt 900


Query: 901 gatgttgaaattatttcaccatcatcatcaagtcaaaccatggtatcaattaattcaact 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gatgttgaaattatttcaccatcatcatcaagtcaaaccatggtatcaattaattcaact 960


Query: 961 ggtgttttagttggtttacattcaattccagttaatttcattgtaaatgatgaaacagtt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ggtgttttagttggtttacattcaattccagttaatttcattgtaaatgatgaaacagtt 1020


Query: 1021 tttcaaattctattcaattttaatattgaattaacaccagctttatctcaatcctctaat 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tttcaaattctattcaattttaatattgaattaacaccagctttatctcaatcctctaat 1080


Query: 1081 ggtattagtgtaactggtacacttgataaattagatgctttggttacagttggttcaaca 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ggtattagtgtaactggtacacttgataaattagatgctttggttacagttggttcaaca 1140


Query: 1141 agtgttggtgatattgatgtttcaggttttgttcaattaattgaattagctcaaggttta 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 agtgttggtgatattgatgtttcaggttttgttcaattaattgaattagctcaaggttta 1200


Query: 1201 gttaaaattccaaccattacaattcaaaatcctttaacaacttattcactctctgattta 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gttaaaattccaaccattacaattcaaaatcctttaacaacttattcactctctgattta 1260


Query: 1261 tctttatcaattggtgatcaatatattcaaattttaggtaatctt 1305
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 tctttatcaattggtgatcaatatattcaaattttaggtaatctt 1305


>Contig-U08895-1 (Contig-U08895-1Q) /CSM_Contig/Contig-U08895-1Q.Seq.d
Length = 1281

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1223 ttcaaaatcctttaacaacttat 1245
|||||||||||||||||||||||
Sbjct: 752 ttcaaaatcctttaacaacttat 774


>Contig-U08192-1 (Contig-U08192-1Q) /CSM_Contig/Contig-U08192-1Q.Seq.d
Length = 1362

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 44 atgaaattatttattttaattat 66
|||||||||||||||||||||||
Sbjct: 54 atgaaattatttattttaattat 76


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,883
Number of Sequences: 6905
Number of extensions: 27883
Number of successful extensions: 3766
Number of sequences better than 10.0: 853
length of query: 1378
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1362
effective length of database: 5,564,391
effective search space: 7578700542
effective search space used: 7578700542
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA
Query= Contig-U09640-1 (Contig-U09640-1Q) /CSM_Contig/Contig-U09640-1Q.Seq.d
(1378 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ414069) Dictyostelium discoideum cDNA clone:ddv17p24, 5' ... 1237 0.0 1
(BJ413681) Dictyostelium discoideum cDNA clone:ddv16i18, 5' ... 1203 0.0 1
(BJ432191) Dictyostelium discoideum cDNA clone:ddv17p24, 3' ... 1195 0.0 1
(BJ434349) Dictyostelium discoideum cDNA clone:ddv16i18, 3' ... 1160 0.0 2
(AU272169) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 555 e-153 1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 36 3e-04 18
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 5e-04 14
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.004 14
(CJ456304) Macaca fascicularis mRNA, clone: QflA-22133, 5' e... 48 0.005 2
(BJ371115) Dictyostelium discoideum cDNA clone:ddc56a24, 5' ... 40 0.013 2
(CG755660) P051-1-G04.zb Ppa EcoRI BAC Library Pristionchus ... 54 0.014 1
(CG744656) P037-2-C07.ya Ppa EcoRI BAC Library Pristionchus ... 54 0.014 1
(FF760310) XABT66385.rev Gateway compatible cien cDNA librar... 36 0.036 3
(AC126085) Rattus norvegicus clone CH230-145O4, WORKING DRAF... 40 0.036 2
(AC125630) Rattus norvegicus clone CH230-9P18, *** SEQUENCIN... 40 0.036 2
(BJ416118) Dictyostelium discoideum cDNA clone:ddv25c03, 5' ... 40 0.044 2
(AB094343) Acalolepta luxuriosa mRNA for acaloleptin A precu... 52 0.057 1
(AC176442) Strongylocentrotus purpuratus clone R3-3066P18, W... 44 0.12 5
(DY682267) TTEAE15THC Tetrahymena thermophila EST library, c... 38 0.17 2
(DY678760) TT1AP08TV Tetrahymena thermophila EST library str... 38 0.17 2
(CX590257) TTE00021577 Amplicon Express - Conjugative Form T... 38 0.17 2
(FF571546) TTEBS74THC Tetrahymena thermophila conjugation cD... 38 0.17 2
(EV843766) TT1F265TH Tetrahymena thermophila SB210 cDNA libr... 38 0.17 2
(AC213802) Zea mays chromosome 1 clone CH201-12P4; ZMMBBc001... 50 0.23 1
(AC205995) Zea mays chromosome 1 clone CH201-118F19; ZMMBBc0... 50 0.23 1
(EJ670023) 1092955054752 Global-Ocean-Sampling_GS-30-02-01-1... 32 0.26 4
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 0.26 14
(BJ415840) Dictyostelium discoideum cDNA clone:ddv23m21, 5' ... 44 0.29 2
(AC124939) Rattus norvegicus clone CH230-335I7, *** SEQUENCI... 44 0.32 3
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.33 17
(AM269894) Eimeria tenella chromosome 1, ordered contigs. 38 0.44 2
(AJ841789) Pichia anomala adh1 gene for alcohol dehydrogenase. 36 0.44 3
(AC138392) Homo sapiens chromosome 1 clone RP11-181C21, comp... 34 0.49 2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 0.54 17
(AC153460) Medicago truncatula clone mth2-76i7, complete seq... 40 0.73 7
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 32 0.77 14
(AC105617) Rattus norvegicus clone CH230-86O16, WORKING DRAF... 44 0.79 3
(BJ370116) Dictyostelium discoideum cDNA clone:ddc52o05, 5' ... 44 0.89 2
(CT737192) Zebrafish DNA sequence from clone DKEYP-106E12 in... 48 0.89 1
(CT027582) Zebrafish DNA sequence from clone CH211-214O2 in ... 48 0.89 1
(CR318588) Zebrafish DNA sequence from clone DKEYP-1H4 in li... 48 0.89 1
(BX640480) Zebrafish DNA sequence from clone DKEYP-86F2 in l... 48 0.89 1
(AM451665) Vitis vinifera contig VV78X126197.2, whole genome... 48 0.89 1
(AX346287) Sequence 1358 from Patent WO0200928. 48 0.89 1
(CR354439) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.89 1
(BX824056) Arabidopsis thaliana Full-length cDNA Complete se... 48 0.89 1
(EK417988) 1095515481070 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.89 1
(EK043239) 1092959534456 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.89 1
(DH368706) Oryzias latipes Fosmid clone:GOLWFno753_c22, reve... 48 0.89 1
(CJ474316) Macaca fascicularis mRNA, clone: QorA-14409, 5' e... 48 0.89 1
(CD090200) MC1-0069T-L154-D11-U.B MC1-0069 Schistosoma manso... 48 0.89 1
(EJ882952) 1093018404889 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.1 2
(EJ862604) 1093018216043 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.2 2
(BJ370106) Dictyostelium discoideum cDNA clone:ddc52m02, 5' ... 38 1.4 3
(AM424360) Vitis vinifera contig VV78X083433.7, whole genome... 42 1.6 2
(CT467562) Sus scrofa genomic clone CH242-449M17, genomic su... 44 1.9 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 32 2.1 21
(AC021657) Homo sapiens 3 BAC RP11-490B19 (Roswell Park Canc... 34 2.1 10
(AM055293) Polyplastron multivesiculatum EST, clone Pm06_E09. 36 2.2 2
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 36 2.2 19
(AC186776) Trichinella spiralis chromosome UNK clone TS195-3... 36 2.2 8
(CZ615777) OM__Ba0144D20.r OM__Ba Oryza minuta genomic clone... 42 2.5 2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 36 2.6 7
(AM482538) Vitis vinifera, whole genome shotgun sequence, co... 38 2.9 4
(AC192613) Trichinella spiralis BAC clone TS195-33H12 from c... 38 2.9 9
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 40 3.0 10
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 3.2 11
(AC091278) Mus musculus chromosome 1, clone RP23-294D6, comp... 40 3.4 8
(BJ389136) Dictyostelium discoideum cDNA clone:dds17k15, 5' ... 38 3.4 3
(AZ674775) ENTJP62TR Entamoeba histolytica Sheared DNA Entam... 32 3.5 4
(CU694324) Zebrafish DNA sequence from clone CH73-278M9 in l... 46 3.5 1
(CR381547) Zebrafish DNA sequence from clone CH211-66F1 in l... 46 3.5 1
(BX649300) Zebrafish DNA sequence from clone CH211-195I16 in... 46 3.5 1
(BX470140) Zebrafish DNA sequence from clone CH211-238E6 in ... 46 3.5 1
(BV246201) S234P6145FG10.T0 EnglishShepherd Canis familiaris... 46 3.5 1
(EF147207) Populus trichocarpa clone WS01229_D22 unknown mRNA. 46 3.5 1
(AC149400) Phakopsora pachyrhizi clone JGIAFNA-61H16, comple... 46 3.5 1
(AC140022) Medicago truncatula chromosome 6 clone mth2-11g20... 46 3.5 1
(AC127021) Medicago truncatula clone mth2-5e5, complete sequ... 46 3.5 1
(U39998) Caenorhabditis elegans cosmid ZK622, complete seque... 46 3.5 1
(CR932841) Paramecium tetraurelia, V-ATPase a subunit 7_2 is... 46 3.5 1
(AF133212) Dictyostelium discoideum unknown gene. 46 3.5 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 46 3.5 1
(AC090136) Homo sapiens chromosome 8, clone RP11-21C4, compl... 46 3.5 1
(AC021518) Homo sapiens chromosome 8, clone RP11-313D2, comp... 46 3.5 1
(AC012535) Homo sapiens chromosome 8, clone RP11-115G12, com... 46 3.5 1
(AC158119) Medicago truncatula clone mth2-89i19, WORKING DRA... 46 3.5 1
(AC155552) Zea mays strain B73 clone ZMMBBc0160K18, *** SEQU... 46 3.5 1
(AC150760) Medicago truncatula clone mth2-171i12, WORKING DR... 46 3.5 1
(AC120489) Rattus norvegicus clone CH230-118C6, *** SEQUENCI... 46 3.5 1
(AC114209) Rattus norvegicus clone CH230-198O21, WORKING DRA... 46 3.5 1
(AC106100) Rattus norvegicus clone CH230-142C14, WORKING DRA... 46 3.5 1
(CU896536) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.5 1
(AC094173) Rattus norvegicus clone CH230-2M7, *** SEQUENCING... 46 3.5 1
(CU467541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.5 1
(CR735108) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 3.5 1
(AC212139) Zea mays chromosome 4 clone CH201-177E3; ZMMBBc01... 46 3.5 1
(AC204698) Zea mays chromosome 4 clone ZMMBBb-177O3; ZMMBBb0... 46 3.5 1
(AC202236) Saimiri boliviensis boliviensis clone CH254-197P1... 46 3.5 1
(AC200010) Ateles geoffroyi clone UC1-16N2, WORKING DRAFT SE... 46 3.5 1

>(BJ414069) Dictyostelium discoideum cDNA clone:ddv17p24, 5' end,
single read.
Length = 624

Score = 1237 bits (624), Expect = 0.0
Identities = 624/624 (100%)
Strand = Plus / Plus


Query: 18 aaaaaatagtgtaataataaccaacaatgaaattatttattttaattattttatccattt 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaaatagtgtaataataaccaacaatgaaattatttattttaattattttatccattt 60


Query: 78 gtttggctttagtaaattcccaacaaggtgtttacccagatagtggtgtttatgtttcat 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtttggctttagtaaattcccaacaaggtgtttacccagatagtggtgtttatgtttcat 120


Query: 138 taaattcaaattttttagctacttttggtaatgaatttactcaaacaattcaaaatcaaa 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaattcaaattttttagctacttttggtaatgaatttactcaaacaattcaaaatcaaa 180


Query: 198 ttaattcatatccagttgcaaatgttgatggtaaaactggtaaagttagttactctgtaa 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttaattcatatccagttgcaaatgttgatggtaaaactggtaaagttagttactctgtaa 240


Query: 258 ctaatattcaacaatcagtacaacttggagatttcttttttcaacaaacaggtgtaaaca 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctaatattcaacaatcagtacaacttggagatttcttttttcaacaaacaggtgtaaaca 300


Query: 318 cttataatattggttggaatagtgttacatttacaattacaaccgattatcaaggttgtt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttataatattggttggaatagtgttacatttacaattacaaccgattatcaaggttgtt 360


Query: 378 ataaaattggtggtcttaaaaaattatcaatttgtgaaaaaggtgatatcaaaattaact 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ataaaattggtggtcttaaaaaattatcaatttgtgaaaaaggtgatatcaaaattaact 420


Query: 438 ctcaagcaactttatcattatcgattgcaatgaccattgatttcactcaatcaactccaa 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctcaagcaactttatcattatcgattgcaatgaccattgatttcactcaatcaactccaa 480


Query: 498 ccatctcttgttcttctacaaccttgaatgtacctgcaaatggtataaactataatgttc 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccatctcttgttcttctacaaccttgaatgtacctgcaaatggtataaactataatgttc 540


Query: 558 attgttcaagtaaagtttgtgataaaactcatgatattacaaatgaaattgcttctaaat 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attgttcaagtaaagtttgtgataaaactcatgatattacaaatgaaattgcttctaaat 600


Query: 618 ttgtaccatcagttgaatctggta 641
||||||||||||||||||||||||
Sbjct: 601 ttgtaccatcagttgaatctggta 624

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,653,492,639
Number of extensions: 104953249
Number of successful extensions: 9199004
Number of sequences better than 10.0: 205
Length of query: 1378
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1354
Effective length of database: 97,308,875,965
Effective search space: 131756218056610
Effective search space used: 131756218056610
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09640-1 (Contig-U09640-1Q) /CSM_Contig/Contig-U09640-1Q.Seq.d
(1378 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54JE8) RecName: Full=UPF0522 protein A; Flags: Precursor; 129 3e-28
BT075392_1(BT075392|pid:none) Osmerus mordax clone omor-rgc-506-... 49 6e-04
AB042026_1(AB042026|pid:none) Oncorhynchus mykiss LBP/BPI-2 mRNA... 46 0.003
AY102628_1(AY102628|pid:none) Gadus morhua clone 11 bactericidal... 43 0.023
AY102629_1(AY102629|pid:none) Gadus morhua clone 24 bactericidal... 43 0.031
AB372877_1(AB372877|pid:none) Plecoglossus altivelis altivelis B... 42 0.040
AC036106_7(AC036106|pid:none) Arabidopsis thaliana chromosome 3 ... 42 0.068
BC158535_1(BC158535|pid:none) Xenopus tropicalis bactericidal/pe... 41 0.089
AK315328_1(AK315328|pid:none) Homo sapiens cDNA, FLJ96367, highl... 40 0.26
BC074326_1(BC074326|pid:none) Xenopus laevis MGC84153 protein, m... 39 0.44
AK296568_1(AK296568|pid:none) Homo sapiens cDNA FLJ51234 complet... 39 0.58
BC040955_1(BC040955|pid:none) Homo sapiens bactericidal/permeabi... 39 0.58
AL391692_1(AL391692|pid:none) Human DNA sequence from clone RP13... 39 0.58
(Q9H203) RecName: Full=Bactericidal permeability-increasing prot... 39 0.58
FM992689_762(FM992689|pid:none) Candida dubliniensis CD36 chromo... 38 0.75
AC116957_116(AC116957|pid:none) Dictyostelium discoideum chromos... 38 0.98
CP000383_2013(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 38 0.98
AU279378_1(AU279378|pid:none) Cyprinus carpio BPI/LBP mRNA for b... 36 2.9
AY446862_7(AY446862|pid:none) Human herpesvirus 5 strain 3301 RL... 36 3.7
CP000361_1005(CP000361|pid:none) Arcobacter butzleri RM4018, com... 36 3.7
AE010300_3073(AE010300|pid:none) Leptospira interrogans serovar ... 36 3.7
AB042025_1(AB042025|pid:none) Oncorhynchus mykiss LBP/BPI-1 mRNA... 36 3.7
CP000360_459(CP000360|pid:none) Acidobacteria bacterium Ellin345... 36 3.7
(Q8BFS9) RecName: Full=Asparagine synthetase domain-containing p... 35 6.4
AK155030_1(AK155030|pid:none) Mus musculus NOD-derived CD11c +ve... 35 6.4
CP001132_2051(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 35 6.4
BC013617_1(BC013617|pid:none) Mus musculus asparagine synthetase... 35 6.4
CP000409_1017(CP000409|pid:none) Rickettsia canadensis str. McKi... 35 6.4
BC161754_1(BC161754|pid:none) Xenopus tropicalis hypothetical pr... 35 8.3
FN392322_369(FN392322|pid:none) Pichia pastoris GS115 chromosome... 35 8.3

>(Q54JE8) RecName: Full=UPF0522 protein A; Flags: Precursor;
Length = 506

Score = 129 bits (323), Expect = 3e-28
Identities = 74/180 (41%), Positives = 111/180 (61%), Gaps = 5/180 (2%)
Frame = +1

Query: 691 QLKIFKLILQVTLTPYLFESLVDAMFESALPMTITPSEVPSESPVHLNTSDPFFNQTAPG 870
QL+ F + +T + ESL DA+F SALPMTI PS+VPS SPV LNTSD FF+ APG
Sbjct: 283 QLESFTSDYSIVVTGFFIESLFDAVFASALPMTINPSQVPSASPVQLNTSDGFFSGVAPG 342

Query: 871 LTGKYPNSPIDVEIISPSSSSQTMVSINSTGVLVGLHSIPVNFIV----NDETVFQILFN 1038
L+ +YPN I V SP + +VSINS+ + + + +FI+ N T F +LF
Sbjct: 343 LS-QYPNLGIQVNCYSPVT---PLVSINSSAISLFNLELSADFIILNGDNPFTAFTVLFT 398

Query: 1039 FNIEL-TPALSQSSNGISVTGTLDKLDALVTVGSTSVGDIDVSGFVQLIELAQGLVKIPT 1215
+ L T L+ S + S+ TL + T+ ++++G +D +GFVQL+++ QG++K+P+
Sbjct: 399 IDASLSTEILTDSPSTFSLNSTLASMTPNATIVTSTIGSVDATGFVQLMQMVQGVIKLPS 458

Score = 124 bits (312), Expect = 6e-27
Identities = 62/198 (31%), Positives = 112/198 (56%), Gaps = 3/198 (1%)
Frame = +2

Query: 56 ILIILSICLALVNSQQGVYPDSGVYVSLNSNFLATFGNEFTQTIQNQINSYPVANVDGKT 235
+L+++SI + +V SQ+G YP +G+YV L+SNFL T G T QN++ S + + G +
Sbjct: 5 LLLLISIIIGIVISQEGAYPPAGIYVGLSSNFLTTEGESLTTYAQNELLSMSLPDQSGSS 64

Query: 236 GKVSYSVTNIQQSVQLGDFFFQQTGVNTYNIGWNSVTFTITTDYQGCYKIGGLKKLSICE 415
K SY+ T+ + + L + F+ Q + Y IGW +++F + +Y C + CE
Sbjct: 65 SKASYTFTSFKLGLTLDNIFYNQLQTDVYQIGWETISFELQWNYHICAN----AIFNPCE 120

Query: 416 KGDIKINSQATLSLSIA--MTIDFTQSTPTISCSSTTLNVPANGINYNVHCSSKVC-DKT 586
G+I++ + + S ++A + ++F ++ +I ++TT+ + NVHCS+ +C
Sbjct: 121 NGNIQVGTVSGASAAVASNVYVEFNSTSTSIIATNTTMAFDQGAVQVNVHCSNAICVIPV 180

Query: 587 HDITNEIASKFVPSVESG 640
DI NE+A FV + +G
Sbjct: 181 SDIANEVAQNFVTELTNG 198

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,784,286,100
Number of extensions: 31501328
Number of successful extensions: 78292
Number of sequences better than 10.0: 30
Number of HSP's gapped: 78159
Number of HSP's successfully gapped: 31
Length of query: 459
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 327
Effective length of database: 618,001,159
Effective search space: 202086378993
Effective search space used: 202086378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.99 gvh: 0.83 alm: 0.37 top: 0.33 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
12.0 %: vacuolar
8.0 %: mitochondrial
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: nuclear

>> prediction for Contig-U09640-1 is exc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1