Contig-U09640-1 |
Contig ID |
Contig-U09640-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1368 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
219988 |
End point |
218635 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
4 |
Number of EST |
5 |
Link to clone list |
U09640 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.16 |
Homology vs DNA |
Query= Contig-U09640-1 (Contig-U09640-1Q) /CSM_Contig/Contig-U09640-1Q.Seq.d (1378 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ414069) Dictyostelium discoideum cDNA clone:ddv17p24, 5' ... 1237 0.0 1 (BJ413681) Dictyostelium discoideum cDNA clone:ddv16i18, 5' ... 1203 0.0 1 (BJ432191) Dictyostelium discoideum cDNA clone:ddv17p24, 3' ... 1195 0.0 1 (BJ434349) Dictyostelium discoideum cDNA clone:ddv16i18, 3' ... 1160 0.0 2 (AU272169) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 555 e-153 1 (BA000016) Clostridium perfringens str. 13 DNA, complete gen... 36 3e-04 18 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 5e-04 14 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.004 14 (CJ456304) Macaca fascicularis mRNA, clone: QflA-22133, 5' e... 48 0.005 2 (BJ371115) Dictyostelium discoideum cDNA clone:ddc56a24, 5' ... 40 0.013 2 (CG755660) P051-1-G04.zb Ppa EcoRI BAC Library Pristionchus ... 54 0.014 1 (CG744656) P037-2-C07.ya Ppa EcoRI BAC Library Pristionchus ... 54 0.014 1 (FF760310) XABT66385.rev Gateway compatible cien cDNA librar... 36 0.036 3 (AC126085) Rattus norvegicus clone CH230-145O4, WORKING DRAF... 40 0.036 2 (AC125630) Rattus norvegicus clone CH230-9P18, *** SEQUENCIN... 40 0.036 2 (BJ416118) Dictyostelium discoideum cDNA clone:ddv25c03, 5' ... 40 0.044 2 (AB094343) Acalolepta luxuriosa mRNA for acaloleptin A precu... 52 0.057 1 (AC176442) Strongylocentrotus purpuratus clone R3-3066P18, W... 44 0.12 5 (DY682267) TTEAE15THC Tetrahymena thermophila EST library, c... 38 0.17 2 (DY678760) TT1AP08TV Tetrahymena thermophila EST library str... 38 0.17 2 (CX590257) TTE00021577 Amplicon Express - Conjugative Form T... 38 0.17 2 (FF571546) TTEBS74THC Tetrahymena thermophila conjugation cD... 38 0.17 2 (EV843766) TT1F265TH Tetrahymena thermophila SB210 cDNA libr... 38 0.17 2 (AC213802) Zea mays chromosome 1 clone CH201-12P4; ZMMBBc001... 50 0.23 1 (AC205995) Zea mays chromosome 1 clone CH201-118F19; ZMMBBc0... 50 0.23 1 (EJ670023) 1092955054752 Global-Ocean-Sampling_GS-30-02-01-1... 32 0.26 4 (AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 0.26 14 (BJ415840) Dictyostelium discoideum cDNA clone:ddv23m21, 5' ... 44 0.29 2 (AC124939) Rattus norvegicus clone CH230-335I7, *** SEQUENCI... 44 0.32 3 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.33 17 (AM269894) Eimeria tenella chromosome 1, ordered contigs. 38 0.44 2 (AJ841789) Pichia anomala adh1 gene for alcohol dehydrogenase. 36 0.44 3 (AC138392) Homo sapiens chromosome 1 clone RP11-181C21, comp... 34 0.49 2 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 0.54 17 (AC153460) Medicago truncatula clone mth2-76i7, complete seq... 40 0.73 7 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 32 0.77 14 (AC105617) Rattus norvegicus clone CH230-86O16, WORKING DRAF... 44 0.79 3 (BJ370116) Dictyostelium discoideum cDNA clone:ddc52o05, 5' ... 44 0.89 2 (CT737192) Zebrafish DNA sequence from clone DKEYP-106E12 in... 48 0.89 1 (CT027582) Zebrafish DNA sequence from clone CH211-214O2 in ... 48 0.89 1 (CR318588) Zebrafish DNA sequence from clone DKEYP-1H4 in li... 48 0.89 1 (BX640480) Zebrafish DNA sequence from clone DKEYP-86F2 in l... 48 0.89 1 (AM451665) Vitis vinifera contig VV78X126197.2, whole genome... 48 0.89 1 (AX346287) Sequence 1358 from Patent WO0200928. 48 0.89 1 (CR354439) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.89 1 (BX824056) Arabidopsis thaliana Full-length cDNA Complete se... 48 0.89 1 (EK417988) 1095515481070 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.89 1 (EK043239) 1092959534456 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.89 1 (DH368706) Oryzias latipes Fosmid clone:GOLWFno753_c22, reve... 48 0.89 1 (CJ474316) Macaca fascicularis mRNA, clone: QorA-14409, 5' e... 48 0.89 1 (CD090200) MC1-0069T-L154-D11-U.B MC1-0069 Schistosoma manso... 48 0.89 1 (EJ882952) 1093018404889 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.1 2 (EJ862604) 1093018216043 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.2 2 (BJ370106) Dictyostelium discoideum cDNA clone:ddc52m02, 5' ... 38 1.4 3 (AM424360) Vitis vinifera contig VV78X083433.7, whole genome... 42 1.6 2 (CT467562) Sus scrofa genomic clone CH242-449M17, genomic su... 44 1.9 2 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 32 2.1 21 (AC021657) Homo sapiens 3 BAC RP11-490B19 (Roswell Park Canc... 34 2.1 10 (AM055293) Polyplastron multivesiculatum EST, clone Pm06_E09. 36 2.2 2 (CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 36 2.2 19 (AC186776) Trichinella spiralis chromosome UNK clone TS195-3... 36 2.2 8 (CZ615777) OM__Ba0144D20.r OM__Ba Oryza minuta genomic clone... 42 2.5 2 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 36 2.6 7 (AM482538) Vitis vinifera, whole genome shotgun sequence, co... 38 2.9 4 (AC192613) Trichinella spiralis BAC clone TS195-33H12 from c... 38 2.9 9 (AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 40 3.0 10 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 3.2 11 (AC091278) Mus musculus chromosome 1, clone RP23-294D6, comp... 40 3.4 8 (BJ389136) Dictyostelium discoideum cDNA clone:dds17k15, 5' ... 38 3.4 3 (AZ674775) ENTJP62TR Entamoeba histolytica Sheared DNA Entam... 32 3.5 4 (CU694324) Zebrafish DNA sequence from clone CH73-278M9 in l... 46 3.5 1 (CR381547) Zebrafish DNA sequence from clone CH211-66F1 in l... 46 3.5 1 (BX649300) Zebrafish DNA sequence from clone CH211-195I16 in... 46 3.5 1 (BX470140) Zebrafish DNA sequence from clone CH211-238E6 in ... 46 3.5 1 (BV246201) S234P6145FG10.T0 EnglishShepherd Canis familiaris... 46 3.5 1 (EF147207) Populus trichocarpa clone WS01229_D22 unknown mRNA. 46 3.5 1 (AC149400) Phakopsora pachyrhizi clone JGIAFNA-61H16, comple... 46 3.5 1 (AC140022) Medicago truncatula chromosome 6 clone mth2-11g20... 46 3.5 1 (AC127021) Medicago truncatula clone mth2-5e5, complete sequ... 46 3.5 1 (U39998) Caenorhabditis elegans cosmid ZK622, complete seque... 46 3.5 1 (CR932841) Paramecium tetraurelia, V-ATPase a subunit 7_2 is... 46 3.5 1 (AF133212) Dictyostelium discoideum unknown gene. 46 3.5 1 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 46 3.5 1 (AC090136) Homo sapiens chromosome 8, clone RP11-21C4, compl... 46 3.5 1 (AC021518) Homo sapiens chromosome 8, clone RP11-313D2, comp... 46 3.5 1 (AC012535) Homo sapiens chromosome 8, clone RP11-115G12, com... 46 3.5 1 (AC158119) Medicago truncatula clone mth2-89i19, WORKING DRA... 46 3.5 1 (AC155552) Zea mays strain B73 clone ZMMBBc0160K18, *** SEQU... 46 3.5 1 (AC150760) Medicago truncatula clone mth2-171i12, WORKING DR... 46 3.5 1 (AC120489) Rattus norvegicus clone CH230-118C6, *** SEQUENCI... 46 3.5 1 (AC114209) Rattus norvegicus clone CH230-198O21, WORKING DRA... 46 3.5 1 (AC106100) Rattus norvegicus clone CH230-142C14, WORKING DRA... 46 3.5 1 (CU896536) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.5 1 (AC094173) Rattus norvegicus clone CH230-2M7, *** SEQUENCING... 46 3.5 1 (CU467541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.5 1 (CR735108) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 3.5 1 (AC212139) Zea mays chromosome 4 clone CH201-177E3; ZMMBBc01... 46 3.5 1 (AC204698) Zea mays chromosome 4 clone ZMMBBb-177O3; ZMMBBb0... 46 3.5 1 (AC202236) Saimiri boliviensis boliviensis clone CH254-197P1... 46 3.5 1 (AC200010) Ateles geoffroyi clone UC1-16N2, WORKING DRAFT SE... 46 3.5 1
>(BJ414069) Dictyostelium discoideum cDNA clone:ddv17p24, 5' end, single read. Length = 624
Score = 1237 bits (624), Expect = 0.0 Identities = 624/624 (100%) Strand = Plus / Plus
Query: 18 aaaaaatagtgtaataataaccaacaatgaaattatttattttaattattttatccattt 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 aaaaaatagtgtaataataaccaacaatgaaattatttattttaattattttatccattt 60
Query: 78 gtttggctttagtaaattcccaacaaggtgtttacccagatagtggtgtttatgtttcat 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtttggctttagtaaattcccaacaaggtgtttacccagatagtggtgtttatgtttcat 120
Query: 138 taaattcaaattttttagctacttttggtaatgaatttactcaaacaattcaaaatcaaa 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 taaattcaaattttttagctacttttggtaatgaatttactcaaacaattcaaaatcaaa 180
Query: 198 ttaattcatatccagttgcaaatgttgatggtaaaactggtaaagttagttactctgtaa 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ttaattcatatccagttgcaaatgttgatggtaaaactggtaaagttagttactctgtaa 240
Query: 258 ctaatattcaacaatcagtacaacttggagatttcttttttcaacaaacaggtgtaaaca 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ctaatattcaacaatcagtacaacttggagatttcttttttcaacaaacaggtgtaaaca 300
Query: 318 cttataatattggttggaatagtgttacatttacaattacaaccgattatcaaggttgtt 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 cttataatattggttggaatagtgttacatttacaattacaaccgattatcaaggttgtt 360
Query: 378 ataaaattggtggtcttaaaaaattatcaatttgtgaaaaaggtgatatcaaaattaact 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ataaaattggtggtcttaaaaaattatcaatttgtgaaaaaggtgatatcaaaattaact 420
Query: 438 ctcaagcaactttatcattatcgattgcaatgaccattgatttcactcaatcaactccaa 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ctcaagcaactttatcattatcgattgcaatgaccattgatttcactcaatcaactccaa 480
Query: 498 ccatctcttgttcttctacaaccttgaatgtacctgcaaatggtataaactataatgttc 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ccatctcttgttcttctacaaccttgaatgtacctgcaaatggtataaactataatgttc 540
Query: 558 attgttcaagtaaagtttgtgataaaactcatgatattacaaatgaaattgcttctaaat 617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 attgttcaagtaaagtttgtgataaaactcatgatattacaaatgaaattgcttctaaat 600
Query: 618 ttgtaccatcagttgaatctggta 641 |||||||||||||||||||||||| Sbjct: 601 ttgtaccatcagttgaatctggta 624
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,653,492,639 Number of extensions: 104953249 Number of successful extensions: 9199004 Number of sequences better than 10.0: 205 Length of query: 1378 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1354 Effective length of database: 97,308,875,965 Effective search space: 131756218056610 Effective search space used: 131756218056610 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.26 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
1 |