Contig-U09621-1
Contig ID Contig-U09621-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09621-1 (Contig-U09621-1Q) /CSM_Contig/Contig-U09621-1Q.Seq.d
AGACGTGACATCATAATTGATTTCGATAAATTTGTTTTAAATACATACAA
ATCTTTTATTTATTTTCTTAATTCAACACTGTAAATAACAAAAAAAAAAA
AAAANTAAAANTANTATTTGGGAANTAAAAAAAAA----------TATCT
TTTGGTGGTGTTAGTTTAGATCAAGCTTCACCAGTTGATTCAAATGTTTC
AATTAGATATGATGGTGTTGTATTATTTGTTTTCATTACATATTCAAATA
CATATACATATTCAACATCAGATTTTAAATATGTTTATTCAGTTCANCAA
ATTGCAAATACAATTTATNATGTACCAGAAACAATCATTTTAGAAAGTAT
TCANTCAAGATTACTTTATAAACGTCATGGTATTCGTGTTATTTTCATTC
AAACTGGNACAATTGGTTCTTTCCATTTCCAAACTTTATTATTAACTCTT
GTTTCAGGTCTTGGTTTATTAGCTGTAGCAACAACTGTTGTA

Gap gap included
Contig length 482
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1145331
End point 1144848
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09621
List of clone(s)

est1=VFG527F,1,136
est2=VFG527Z,137,484
Translated Amino Acid sequence
dvts*lisinlf*ihtnllfifliqhck*QKKKKXKXXIWEXKK---

---SFGGVSLDQASPVDSNVSIRYDGVVLFVFITYSNTYTYSTSDFKYVYSVXQIANTIY
XVPETIILESIXSRLLYKRHGIRVIFIQTGTIGSFHFQTLLLTLVSGLGLLAVATTVV


Translated Amino Acid sequence (All Frames)
Frame A:
rrdiiidfdkfvlntyksfiyflnstl*itkkkkx*xxylgxkkk---

---yllvvlv*iklhqliqmfqldmmvlyylfslhiqihihiqhqilnmfiqfxklqiqf
xmyqkqsf*kvfxqdyfinvmvfvlfsfklxqlvlsisklyy*llfqvlvy*l*qqll

Frame B:
dvts*lisinlf*ihtnllfifliqhck*QKKKKXKXXIWEXKK---

---ifwwc*frssfts*fkcfn*i*wcciicfhyifkyiyifnirf*iclfssxnckynl
xctrnnhfrkysxkitl*tswyscyfhsnwxnwffpfpnfiinscfrswfiscsnncc

Frame C:
t*hhn*fr*icfkyiqifylfs*fntvnnkkkkkxkxxfgx*kk---

---SFGGVSLDQASPVDSNVSIRYDGVVLFVFITYSNTYTYSTSDFKYVYSVXQIANTIY
XVPETIILESIXSRLLYKRHGIRVIFIQTGTIGSFHFQTLLLTLVSGLGLLAVATTVV

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09621-1 (Contig-U09621-1Q)
/CSM_Contig/Contig-U09621-1Q.Seq.d
(492 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09621-1 (Contig-U09621-1Q) /CSM_Contig/Conti... 664 0.0
Contig-U12675-1 (Contig-U12675-1Q) /CSM_Contig/Conti... 36 0.034
Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti... 36 0.034
Contig-U14734-1 (Contig-U14734-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U11367-1 (Contig-U11367-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U11213-1 (Contig-U11213-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U05345-1 (Contig-U05345-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U10467-1 (Contig-U10467-1Q) /CSM_Contig/Conti... 28 8.3

>Contig-U09621-1 (Contig-U09621-1Q) /CSM_Contig/Contig-U09621-1Q.Seq.d
Length = 492

Score = 664 bits (335), Expect = 0.0
Identities = 347/347 (100%)
Strand = Plus / Plus


Query: 146 tatcttttggtggtgttagtttagatcaagcttcaccagttgattcaaatgtttcaatta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tatcttttggtggtgttagtttagatcaagcttcaccagttgattcaaatgtttcaatta 205


Query: 206 gatatgatggtgttgtattatttgttttcattacatattcaaatacatatacatattcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gatatgatggtgttgtattatttgttttcattacatattcaaatacatatacatattcaa 265


Query: 266 catcagattttaaatatgtttattcagttcancaaattgcaaatacaatttatnatgtac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 catcagattttaaatatgtttattcagttcancaaattgcaaatacaatttatnatgtac 325


Query: 326 cagaaacaatcattttagaaagtattcantcaagattactttataaacgtcatggtattc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagaaacaatcattttagaaagtattcantcaagattactttataaacgtcatggtattc 385


Query: 386 gtgttattttcattcaaactggnacaattggttctttccatttccaaactttattattaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgttattttcattcaaactggnacaattggttctttccatttccaaactttattattaa 445


Query: 446 ctcttgtttcaggtcttggtttattagctgtagcaacaactgttgta 492
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctcttgtttcaggtcttggtttattagctgtagcaacaactgttgta 492


Score = 176 bits (89), Expect = 1e-44
Identities = 89/89 (100%)
Strand = Plus / Plus


Query: 1 agacgtgacatcataattgatttcgataaatttgttttaaatacatacaaatcttttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agacgtgacatcataattgatttcgataaatttgttttaaatacatacaaatcttttatt 60


Query: 61 tattttcttaattcaacactgtaaataac 89
|||||||||||||||||||||||||||||
Sbjct: 61 tattttcttaattcaacactgtaaataac 89


>Contig-U12675-1 (Contig-U12675-1Q) /CSM_Contig/Contig-U12675-1Q.Seq.d
Length = 830

Score = 36.2 bits (18), Expect = 0.034
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 54 ttttatttattttcttaa 71
||||||||||||||||||
Sbjct: 732 ttttatttattttcttaa 715


>Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Contig-U11414-1Q.Seq.d
Length = 1931

Score = 36.2 bits (18), Expect = 0.034
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 210 tgatggtgttgtattatt 227
||||||||||||||||||
Sbjct: 1406 tgatggtgttgtattatt 1389


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,182
Number of Sequences: 6905
Number of extensions: 11182
Number of successful extensions: 1265
Number of sequences better than 10.0: 300
length of query: 492
length of database: 5,674,871
effective HSP length: 16
effective length of query: 476
effective length of database: 5,564,391
effective search space: 2648650116
effective search space used: 2648650116
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.16
Homology vs DNA
Query= Contig-U09621-1 (Contig-U09621-1Q) /CSM_Contig/Contig-U09621-1Q.Seq.d
(492 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 599 0.0 3
(EU047552) Dictyostelium discoideum P2X receptor ATP-gated i... 664 0.0 1
(BJ431472) Dictyostelium discoideum cDNA clone:ddv14e07, 3' ... 664 0.0 1
(BJ413130) Dictyostelium discoideum cDNA clone:ddv14e07, 5' ... 176 5e-40 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 48 2e-26 6
(AC126783) Medicago truncatula clone mth2-15k17, complete se... 50 0.075 1
(AC111852) Rattus norvegicus clone CH230-12H7, *** SEQUENCIN... 50 0.075 1
(CW858582) shei4-61.g_055.ab1 Whole-genome shotgun library o... 50 0.075 1
(CU468572) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.14 4
(CU928530) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.22 3
(AG035415) Pan troglodytes DNA, clone: PTB-011A22.F. 36 0.22 2
(CU210932) Mouse DNA sequence from clone DN-106G2 on chromos... 48 0.30 1
(AL928632) Mouse DNA sequence from clone RP23-303M15 on chro... 48 0.30 1
(AC167164) Mus musculus chromosome 7, clone RP24-276M8, comp... 48 0.30 1
(AC110911) Mus musculus chromosome 7, clone RP24-357A15, com... 48 0.30 1
(CU655913) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.30 1
(CU606941) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.30 1
(AL772189) Zebrafish DNA sequence from clone CH211-135B6 in ... 38 0.61 5
(AC012061) Homo sapiens BAC clone CTD-2052D1 from 7, complet... 40 0.79 3
(AC189489) Brassica rapa subsp. pekinensis clone KBrB084K02,... 40 0.79 5
(AC130449) Homo sapiens chromosome 16 clone CTA-233A7, compl... 38 0.84 3
(AC002399) Homo sapiens clone A-481B3, *** SEQUENCING IN PRO... 38 0.94 4
(AC009030) Homo sapiens chromosome 16 clone RP11-13G6, compl... 38 0.96 3
(AL928901) Zebrafish DNA sequence from clone CH211-155M12 in... 36 1.0 6
(AC138611) Mus musculus BAC clone RP23-41P19 from chromosome... 46 1.2 1
(AC122118) Mus musculus chromosome 18, clone RP24-225P17, co... 46 1.2 1
(AC189734) Trichinella spiralis BAC clone TS195-20H12 from c... 46 1.2 1
(AL391383) Human DNA sequence from clone RP11-532O21 on chro... 46 1.2 1
(AC068112) Homo sapiens chromosome 18, clone RP11-526H11, co... 46 1.2 1
(AC162480) Bos taurus clone CH240-119E24, WORKING DRAFT SEQU... 46 1.2 1
(AC157172) Bos taurus clone CH240-67L12, WORKING DRAFT SEQUE... 46 1.2 1
(AC145017) Felis catus clone RP86-269K3, WORKING DRAFT SEQUE... 46 1.2 1
(AC136938) Homo sapiens chromosome 16 clone RP11-1152A8, WOR... 46 1.2 1
(CU914339) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1
(CU896597) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1
(AC090212) Homo sapiens chromosome 18 clone RP11-760C16 map ... 46 1.2 1
(CU074395) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1
(AC230302) Bos taurus clone CH240-513G12, WORKING DRAFT SEQU... 46 1.2 1
(AC222893) Bos taurus clone CH240-436A11, WORKING DRAFT SEQU... 46 1.2 1
(AC170956) Bos taurus clone CH240-262P21, WORKING DRAFT SEQU... 46 1.2 1
(AC165740) Bos taurus clone CH240-161B17, WORKING DRAFT SEQU... 46 1.2 1
(AC021509) Homo sapiens chromosome 18 clone RP11-255L11 map ... 46 1.2 1
(ET692328) CHO_OF332xm22r1.ab1 CHO_OF Nicotiana tabacum geno... 46 1.2 1
(DE399907) Bombyx mori genomic DNA, BAC clone:1B2D. 46 1.2 1
(CC480433) CH240_307F12.T7 CHORI-240 Bos taurus genomic clon... 46 1.2 1
(CO638301) USDA-FP_107038 Adult Glassy-winged Sharpshooter H... 46 1.2 1
(CO130657) GR__Eb33I08.r GR__Eb Gossypium raimondii cDNA clo... 46 1.2 1
(CO130656) GR__Eb33I08.f GR__Eb Gossypium raimondii cDNA clo... 46 1.2 1
(CO104240) GR__Eb0033I08.f GR__Eb Gossypium raimondii cDNA c... 46 1.2 1
(BW642990) Dugesia ryukyuensis mRNA, clone: Dr_sW_026_A21, 5... 46 1.2 1
(BW641387) Dugesia ryukyuensis mRNA, clone: Dr_sW_021_C07, 5... 46 1.2 1
(BX950199) Zebrafish DNA sequence from clone CH211-215A11 in... 40 1.2 3
(AC106815) Homo sapiens chromosome 16 clone RP11-626G21, WOR... 40 1.3 2
(AC168454) Strongylocentrotus purpuratus clone R3-35M20, WOR... 32 1.3 7
(AC013718) Homo sapiens BAC clone RP11-116I17 from 2, comple... 40 1.3 2
(AC098527) Rattus norvegicus clone CH230-82N17, WORKING DRAF... 40 1.3 5
(AZ887478) RPCI-24-167O24.TV RPCI-24 Mus musculus genomic cl... 40 1.4 2
(CR384075) Zebrafish DNA sequence from clone DKEY-231E3 in l... 36 1.5 5
(AC133062) Rattus norvegicus clone CH230-4H17, WORKING DRAFT... 40 1.7 2
(ED880734) OA_CBa0034O09.f OA_CBa Oryza australiensis genomi... 40 1.8 2
(AP003403) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 34 1.9 5
(AC109197) Mus musculus chromosome 1, clone RP23-309A8, comp... 32 2.3 2
(AC150616) Callithrix jacchus clone CH259-471J6, WORKING DRA... 34 2.7 4
(AC179014) Strongylocentrotus purpuratus clone R3-32I23, WOR... 34 3.1 6
(CP000312) Clostridium perfringens SM101, complete genome. 40 3.6 15
(AC230428) Bos taurus clone CH240-509B20, WORKING DRAFT SEQU... 38 4.6 5
(AC161572) Mus musculus chromosome 15, clone RP23-358J10, co... 44 4.6 1
(AC159631) Mus musculus BAC clone RP24-177F21 from chromosom... 44 4.6 1
(AC158382) Mus musculus BAC clone RP24-105N17 from chromosom... 44 4.6 1
(AC158365) Mus musculus BAC clone RP23-182N12 from chromosom... 44 4.6 1
(AC134468) Mus musculus BAC clone RP23-97J21 from chromosome... 44 4.6 1
(AC122293) Mus musculus BAC clone RP23-257O9 from 10, comple... 44 4.6 1
(AC102647) Mus musculus chromosome 10, clone RP23-269A24, co... 44 4.6 1
(AC100738) Mus musculus chromosome 15, clone RP24-362K21, co... 44 4.6 1
(EF461010) Helianthus annuus clone ZVG17_ZENA17-F ZVG17 locu... 44 4.6 1
(DQ336955) Glycine max cultivar Williams 82 clone BAC gmw1-5... 44 4.6 1
(AM437607) Vitis vinifera contig VV78X235706.4, whole genome... 44 4.6 1
(AM430366) Vitis vinifera contig VV78X201612.3, whole genome... 44 4.6 1
(AM423271) Vitis vinifera contig VV78X118542.7, whole genome... 44 4.6 1
(CT737383) Pig DNA sequence from clone CH242-215D15 on chrom... 44 4.6 1
(AE013599) Drosophila melanogaster chromosome 2R, complete s... 44 4.6 1
(AC005713) Drosophila melanogaster, chromosome 2R, region 54... 44 4.6 1
(AC145047) Sus scrofa clone RP44-44B5, WORKING DRAFT SEQUENC... 44 4.6 1
(AC133878) Mus musculus chromosome 10 clone RP24-219D21 map ... 44 4.6 1
(AC107465) Rattus norvegicus clone CH230-86H10, *** SEQUENCI... 44 4.6 1
(AC183079) Bos taurus clone CH240-75A22, WORKING DRAFT SEQUE... 44 4.6 1
(AC183076) Bos taurus clone CH240-77J8, WORKING DRAFT SEQUEN... 44 4.6 1
(AC169446) Bos taurus clone CH240-196H18, WORKING DRAFT SEQU... 44 4.6 1
(AC165568) Bos taurus clone CH240-161H6, WORKING DRAFT SEQUE... 44 4.6 1
(AC014268) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 4.6 1
(AC007835) Drosophila melanogaster strain y chromosome 2 clo... 44 4.6 1
(EI080053) hgy0002ad11.b1 hgy Oryza officinalis genomic clon... 44 4.6 1
(ED801426) MG__Ba0018E16f MG__Ba Mimulus guttatus genomic, g... 44 4.6 1
(DU521707) 1098609853651 CHORI-243 Ovis aries genomic clone ... 44 4.6 1
(DE417863) Bombyx mori genomic DNA, BAC clone:18C1B. 44 4.6 1
(DE394301) Bombyx mori genomic DNA, BAC clone:15J10F. 44 4.6 1
(DE113304) Oryzias latipes DNA, forward end of BAC clone: Md... 44 4.6 1
(CU764119) A BAC library has been constructed from PN40024 g... 44 4.6 1
(AG280087) Mus musculus molossinus DNA, clone:MSMg01-051E06.... 44 4.6 1
(EG668883) RCRC955TP Castor bean cDNA library from roots, 1.... 44 4.6 1

>(AC115599) Dictyostelium discoideum chromosome 2 map 4229098-4354721
strain AX4, complete sequence.
Length = 125623

Score = 599 bits (302), Expect(3) = 0.0
Identities = 310/314 (98%)
Strand = Plus / Minus


Query: 179 caccagttgattcaaatgtttcaattagatatgatggtgttgtattatttgttttcatta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95671 caccagttgattcaaatgtttcaattagatatgatggtgttgtattatttgttttcatta 95612


Query: 239 catattcaaatacatatacatattcaacatcagattttaaatatgtttattcagttcanc 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 95611 catattcaaatacatatacatattcaacatcagattttaaatatgtttattcagttcaac 95552


Query: 299 aaattgcaaatacaatttatnatgtaccagaaacaatcattttagaaagtattcantcaa 358
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 95551 aaattgcaaatacaatttatgatgtaccagaaacaatcattttagaaagtattcattcaa 95492


Query: 359 gattactttataaacgtcatggtattcgtgttattttcattcaaactggnacaattggtt 418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 95491 gattactttataaacgtcatggtattcgtgttattttcattcaaactggtacaattggtt 95432


Query: 419 ctttccatttccaaactttattattaactcttgtttcaggtcttggtttattagctgtag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95431 ctttccatttccaaactttattattaactcttgtttcaggtcttggtttattagctgtag 95372


Query: 479 caacaactgttgta 492
||||||||||||||
Sbjct: 95371 caacaactgttgta 95358

Score = 176 bits (89), Expect(3) = 0.0
Identities = 89/89 (100%)
Strand = Plus / Minus


Query: 1 agacgtgacatcataattgatttcgataaatttgttttaaatacatacaaatcttttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96809 agacgtgacatcataattgatttcgataaatttgttttaaatacatacaaatcttttatt 96750


Query: 61 tattttcttaattcaacactgtaaataac 89
|||||||||||||||||||||||||||||
Sbjct: 96749 tattttcttaattcaacactgtaaataac 96721

Score = 65.9 bits (33), Expect(3) = 0.0
Identities = 33/33 (100%)
Strand = Plus / Minus


Query: 146 tatcttttggtggtgttagtttagatcaagctt 178
|||||||||||||||||||||||||||||||||
Sbjct: 95827 tatcttttggtggtgttagtttagatcaagctt 95795

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 603,261,875
Number of extensions: 45446294
Number of successful extensions: 4265179
Number of sequences better than 10.0: 164
Length of query: 492
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 469
Effective length of database: 93,106,754,628
Effective search space: 43667067920532
Effective search space used: 43667067920532
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09621-1 (Contig-U09621-1Q) /CSM_Contig/Contig-U09621-1Q.Seq.d
(492 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115599_40(AC115599|pid:none) Dictyostelium discoideum chromoso... 156 2e-37
AC116305_39(AC116305|pid:none) Dictyostelium discoideum chromoso... 102 5e-21

>AC115599_40(AC115599|pid:none) Dictyostelium discoideum chromosome
2 map 4229098-4354721 strain AX4, complete sequence.
&EU047552_1(EU047552|pid:none)
Length = 378

Score = 156 bits (395), Expect = 2e-37
Identities = 85/115 (73%), Positives = 85/115 (73%)
Frame = +1

Query: 148 SFGGVSLDQASPVDSNVSIRYDGVVLFVFIXXXXXXXXXXXDFKYVYSVXQIANTIYXVP 327
SFGGVSLDQASPVDSNVSIRYDGVVLFVFI DFKYVYSV QIANTIY VP
Sbjct: 215 SFGGVSLDQASPVDSNVSIRYDGVVLFVFITYSNTYTYSTSDFKYVYSVQQIANTIYDVP 274

Query: 328 ETIILESIXSRLLYKRHGIRVIFIQTGTIGSFHFQXXXXXXXXXXXXXXXXTTVV 492
ETIILESI SRLLYKRHGIRVIFIQTGTIGSFHFQ TTVV
Sbjct: 275 ETIILESIHSRLLYKRHGIRVIFIQTGTIGSFHFQTLLLTLVSGLGLLAVATTVV 329

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 506,128,651
Number of extensions: 6833745
Number of successful extensions: 9780
Number of sequences better than 10.0: 2
Number of HSP's gapped: 9779
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 1,040,966,779
Length adjustment: 118
Effective length of query: 46
Effective length of database: 662,861,149
Effective search space: 30491612854
Effective search space used: 30491612854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.54 gvh: 0.50 alm: 0.27 top: 0.43 tms: 0.07 mit: 0.15 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.09 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: vesicles of secretory system
16.0 %: nuclear
12.0 %: plasma membrane
8.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for Contig-U09621-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0