Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U09621-1 (Contig-U09621-1Q) /CSM_Contig/Contig-U09621-1Q.Seq.d (492 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 599 0.0 3 (EU047552) Dictyostelium discoideum P2X receptor ATP-gated i... 664 0.0 1 (BJ431472) Dictyostelium discoideum cDNA clone:ddv14e07, 3' ... 664 0.0 1 (BJ413130) Dictyostelium discoideum cDNA clone:ddv14e07, 5' ... 176 5e-40 1 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 48 2e-26 6 (AC126783) Medicago truncatula clone mth2-15k17, complete se... 50 0.075 1 (AC111852) Rattus norvegicus clone CH230-12H7, *** SEQUENCIN... 50 0.075 1 (CW858582) shei4-61.g_055.ab1 Whole-genome shotgun library o... 50 0.075 1 (CU468572) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.14 4 (CU928530) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.22 3 (AG035415) Pan troglodytes DNA, clone: PTB-011A22.F. 36 0.22 2 (CU210932) Mouse DNA sequence from clone DN-106G2 on chromos... 48 0.30 1 (AL928632) Mouse DNA sequence from clone RP23-303M15 on chro... 48 0.30 1 (AC167164) Mus musculus chromosome 7, clone RP24-276M8, comp... 48 0.30 1 (AC110911) Mus musculus chromosome 7, clone RP24-357A15, com... 48 0.30 1 (CU655913) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.30 1 (CU606941) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.30 1 (AL772189) Zebrafish DNA sequence from clone CH211-135B6 in ... 38 0.61 5 (AC012061) Homo sapiens BAC clone CTD-2052D1 from 7, complet... 40 0.79 3 (AC189489) Brassica rapa subsp. pekinensis clone KBrB084K02,... 40 0.79 5 (AC130449) Homo sapiens chromosome 16 clone CTA-233A7, compl... 38 0.84 3 (AC002399) Homo sapiens clone A-481B3, *** SEQUENCING IN PRO... 38 0.94 4 (AC009030) Homo sapiens chromosome 16 clone RP11-13G6, compl... 38 0.96 3 (AL928901) Zebrafish DNA sequence from clone CH211-155M12 in... 36 1.0 6 (AC138611) Mus musculus BAC clone RP23-41P19 from chromosome... 46 1.2 1 (AC122118) Mus musculus chromosome 18, clone RP24-225P17, co... 46 1.2 1 (AC189734) Trichinella spiralis BAC clone TS195-20H12 from c... 46 1.2 1 (AL391383) Human DNA sequence from clone RP11-532O21 on chro... 46 1.2 1 (AC068112) Homo sapiens chromosome 18, clone RP11-526H11, co... 46 1.2 1 (AC162480) Bos taurus clone CH240-119E24, WORKING DRAFT SEQU... 46 1.2 1 (AC157172) Bos taurus clone CH240-67L12, WORKING DRAFT SEQUE... 46 1.2 1 (AC145017) Felis catus clone RP86-269K3, WORKING DRAFT SEQUE... 46 1.2 1 (AC136938) Homo sapiens chromosome 16 clone RP11-1152A8, WOR... 46 1.2 1 (CU914339) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1 (CU896597) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1 (AC090212) Homo sapiens chromosome 18 clone RP11-760C16 map ... 46 1.2 1 (CU074395) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1 (AC230302) Bos taurus clone CH240-513G12, WORKING DRAFT SEQU... 46 1.2 1 (AC222893) Bos taurus clone CH240-436A11, WORKING DRAFT SEQU... 46 1.2 1 (AC170956) Bos taurus clone CH240-262P21, WORKING DRAFT SEQU... 46 1.2 1 (AC165740) Bos taurus clone CH240-161B17, WORKING DRAFT SEQU... 46 1.2 1 (AC021509) Homo sapiens chromosome 18 clone RP11-255L11 map ... 46 1.2 1 (ET692328) CHO_OF332xm22r1.ab1 CHO_OF Nicotiana tabacum geno... 46 1.2 1 (DE399907) Bombyx mori genomic DNA, BAC clone:1B2D. 46 1.2 1 (CC480433) CH240_307F12.T7 CHORI-240 Bos taurus genomic clon... 46 1.2 1 (CO638301) USDA-FP_107038 Adult Glassy-winged Sharpshooter H... 46 1.2 1 (CO130657) GR__Eb33I08.r GR__Eb Gossypium raimondii cDNA clo... 46 1.2 1 (CO130656) GR__Eb33I08.f GR__Eb Gossypium raimondii cDNA clo... 46 1.2 1 (CO104240) GR__Eb0033I08.f GR__Eb Gossypium raimondii cDNA c... 46 1.2 1 (BW642990) Dugesia ryukyuensis mRNA, clone: Dr_sW_026_A21, 5... 46 1.2 1 (BW641387) Dugesia ryukyuensis mRNA, clone: Dr_sW_021_C07, 5... 46 1.2 1 (BX950199) Zebrafish DNA sequence from clone CH211-215A11 in... 40 1.2 3 (AC106815) Homo sapiens chromosome 16 clone RP11-626G21, WOR... 40 1.3 2 (AC168454) Strongylocentrotus purpuratus clone R3-35M20, WOR... 32 1.3 7 (AC013718) Homo sapiens BAC clone RP11-116I17 from 2, comple... 40 1.3 2 (AC098527) Rattus norvegicus clone CH230-82N17, WORKING DRAF... 40 1.3 5 (AZ887478) RPCI-24-167O24.TV RPCI-24 Mus musculus genomic cl... 40 1.4 2 (CR384075) Zebrafish DNA sequence from clone DKEY-231E3 in l... 36 1.5 5 (AC133062) Rattus norvegicus clone CH230-4H17, WORKING DRAFT... 40 1.7 2 (ED880734) OA_CBa0034O09.f OA_CBa Oryza australiensis genomi... 40 1.8 2 (AP003403) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 34 1.9 5 (AC109197) Mus musculus chromosome 1, clone RP23-309A8, comp... 32 2.3 2 (AC150616) Callithrix jacchus clone CH259-471J6, WORKING DRA... 34 2.7 4 (AC179014) Strongylocentrotus purpuratus clone R3-32I23, WOR... 34 3.1 6 (CP000312) Clostridium perfringens SM101, complete genome. 40 3.6 15 (AC230428) Bos taurus clone CH240-509B20, WORKING DRAFT SEQU... 38 4.6 5 (AC161572) Mus musculus chromosome 15, clone RP23-358J10, co... 44 4.6 1 (AC159631) Mus musculus BAC clone RP24-177F21 from chromosom... 44 4.6 1 (AC158382) Mus musculus BAC clone RP24-105N17 from chromosom... 44 4.6 1 (AC158365) Mus musculus BAC clone RP23-182N12 from chromosom... 44 4.6 1 (AC134468) Mus musculus BAC clone RP23-97J21 from chromosome... 44 4.6 1 (AC122293) Mus musculus BAC clone RP23-257O9 from 10, comple... 44 4.6 1 (AC102647) Mus musculus chromosome 10, clone RP23-269A24, co... 44 4.6 1 (AC100738) Mus musculus chromosome 15, clone RP24-362K21, co... 44 4.6 1 (EF461010) Helianthus annuus clone ZVG17_ZENA17-F ZVG17 locu... 44 4.6 1 (DQ336955) Glycine max cultivar Williams 82 clone BAC gmw1-5... 44 4.6 1 (AM437607) Vitis vinifera contig VV78X235706.4, whole genome... 44 4.6 1 (AM430366) Vitis vinifera contig VV78X201612.3, whole genome... 44 4.6 1 (AM423271) Vitis vinifera contig VV78X118542.7, whole genome... 44 4.6 1 (CT737383) Pig DNA sequence from clone CH242-215D15 on chrom... 44 4.6 1 (AE013599) Drosophila melanogaster chromosome 2R, complete s... 44 4.6 1 (AC005713) Drosophila melanogaster, chromosome 2R, region 54... 44 4.6 1 (AC145047) Sus scrofa clone RP44-44B5, WORKING DRAFT SEQUENC... 44 4.6 1 (AC133878) Mus musculus chromosome 10 clone RP24-219D21 map ... 44 4.6 1 (AC107465) Rattus norvegicus clone CH230-86H10, *** SEQUENCI... 44 4.6 1 (AC183079) Bos taurus clone CH240-75A22, WORKING DRAFT SEQUE... 44 4.6 1 (AC183076) Bos taurus clone CH240-77J8, WORKING DRAFT SEQUEN... 44 4.6 1 (AC169446) Bos taurus clone CH240-196H18, WORKING DRAFT SEQU... 44 4.6 1 (AC165568) Bos taurus clone CH240-161H6, WORKING DRAFT SEQUE... 44 4.6 1 (AC014268) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 4.6 1 (AC007835) Drosophila melanogaster strain y chromosome 2 clo... 44 4.6 1 (EI080053) hgy0002ad11.b1 hgy Oryza officinalis genomic clon... 44 4.6 1 (ED801426) MG__Ba0018E16f MG__Ba Mimulus guttatus genomic, g... 44 4.6 1 (DU521707) 1098609853651 CHORI-243 Ovis aries genomic clone ... 44 4.6 1 (DE417863) Bombyx mori genomic DNA, BAC clone:18C1B. 44 4.6 1 (DE394301) Bombyx mori genomic DNA, BAC clone:15J10F. 44 4.6 1 (DE113304) Oryzias latipes DNA, forward end of BAC clone: Md... 44 4.6 1 (CU764119) A BAC library has been constructed from PN40024 g... 44 4.6 1 (AG280087) Mus musculus molossinus DNA, clone:MSMg01-051E06.... 44 4.6 1 (EG668883) RCRC955TP Castor bean cDNA library from roots, 1.... 44 4.6 1
>(AC115599) Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. Length = 125623
Score = 599 bits (302), Expect(3) = 0.0 Identities = 310/314 (98%) Strand = Plus / Minus
Query: 179 caccagttgattcaaatgtttcaattagatatgatggtgttgtattatttgttttcatta 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95671 caccagttgattcaaatgtttcaattagatatgatggtgttgtattatttgttttcatta 95612
Query: 239 catattcaaatacatatacatattcaacatcagattttaaatatgtttattcagttcanc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 95611 catattcaaatacatatacatattcaacatcagattttaaatatgtttattcagttcaac 95552
Query: 299 aaattgcaaatacaatttatnatgtaccagaaacaatcattttagaaagtattcantcaa 358 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct: 95551 aaattgcaaatacaatttatgatgtaccagaaacaatcattttagaaagtattcattcaa 95492
Query: 359 gattactttataaacgtcatggtattcgtgttattttcattcaaactggnacaattggtt 418 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 95491 gattactttataaacgtcatggtattcgtgttattttcattcaaactggtacaattggtt 95432
Query: 419 ctttccatttccaaactttattattaactcttgtttcaggtcttggtttattagctgtag 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95431 ctttccatttccaaactttattattaactcttgtttcaggtcttggtttattagctgtag 95372
Query: 479 caacaactgttgta 492 |||||||||||||| Sbjct: 95371 caacaactgttgta 95358
Score = 176 bits (89), Expect(3) = 0.0 Identities = 89/89 (100%) Strand = Plus / Minus
Query: 1 agacgtgacatcataattgatttcgataaatttgttttaaatacatacaaatcttttatt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96809 agacgtgacatcataattgatttcgataaatttgttttaaatacatacaaatcttttatt 96750
Query: 61 tattttcttaattcaacactgtaaataac 89 ||||||||||||||||||||||||||||| Sbjct: 96749 tattttcttaattcaacactgtaaataac 96721
Score = 65.9 bits (33), Expect(3) = 0.0 Identities = 33/33 (100%) Strand = Plus / Minus
Query: 146 tatcttttggtggtgttagtttagatcaagctt 178 ||||||||||||||||||||||||||||||||| Sbjct: 95827 tatcttttggtggtgttagtttagatcaagctt 95795
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 603,261,875 Number of extensions: 45446294 Number of successful extensions: 4265179 Number of sequences better than 10.0: 164 Length of query: 492 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 469 Effective length of database: 93,106,754,628 Effective search space: 43667067920532 Effective search space used: 43667067920532 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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