Contig-U09615-1
Contig ID Contig-U09615-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09615-1 (Contig-U09615-1Q) /CSM_Contig/Contig-U09615-1Q.Seq.d
ATTATTGAACTATAAATAAATTGTGGTATATTATATCTATTTTGTAGTTT
AAGTTATATTTAAACTTTATATAAATAAATATGAATAAACCATTAATTTA
TATTTTGTTATTATCGTTTTGTTTATTCAATGTTTCAAAAAGTTTCAGTA
ATTTTGTAACAGATAGTTGGATTACAATTGTAATATCAGGTACTGAAAAT
GCACCAAAAGCAGTATCATTACATTCAGCAGCATTAAACCCAATTAATAA
TACAATGATTGTATTTGGTGGTAAAGATTCTGATCATTTACCAAATAATA
ATTTAACAATATACGATTTAATTCAAGATTCATGGTTAGCAAAGAATAAA
AATGCAAATCATACAAAATTAAATTTACCAGGTTCAATACCATCTGAACG
TTATGGCCATGTTGCTTTAACAACACCTGATAATAGAATGTTTATTTTTG
GTGGTAGAAATCAATCAACTGTTTTTAATGATATTTATAAATATAATATG
G----------TTTTTACACTCATCAATAATGACATTAACTAATCAAATG
ATAGTTTTCGGTGGTAAATATAATGAGAATAGTACTACCACTACTACATC
AACATCATCATCATTATCATCATCAAAAGTTAGTGGTGCAATTTATATTT
TCGATGCAGAGAATGAGAAATGGGTAAATGCAACATTGAATTCCACATCA
TCAACACCAGATTCAAGATATGGCCACACCGCTGTATTGACACCATTGGG
CACAATGTTGGTATTTGCTGGTAATGATTCAACTTCGAATGCAGTTTCAT
CAGTTTGGAGATACAGTATAGAGTTTAGTAAATGGGAATTCGTTTCAAGT
ATTGGTAGTGGTGGTCCTGATGCTAGATCAGGCCATACTTCAATAACCAC
GCTTTTCAATACTATGATTACATTTGGTGGTCAAAGTTCTGGCACTAAAT
ATTATAATGATCTCTATAAATATAATATCATAAATTCAGTTCTTAGATCT
TCTTCTGATGGTACAACTTTGGTTGTATTATTAAGTCTTGTTGGTGCTAT
GATCATTGGTTTATGTTTCGCTTTAGATTATATCACTGAAAAGAATGAAA
TTGCAAGATTAGAAAGATTAGAAAAAGATGCTATGCTAAAAATA

Gap gap included
Contig length 1134
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4459395
End point 4458259
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09615
List of clone(s)

est1=VFG316F,1,502
est2=VFG316Z,503,1136
Translated Amino Acid sequence
y*tinklwyiisil*fklylnfi*INMNKPLIYILLLSFCLFNVSKSFSNFVTDSWITIV
ISGTENAPKAVSLHSAALNPINNTMIVFGGKDSDHLPNNNLTIYDLIQDSWLAKNKNANH
TKLNLPGSIPSERYGHVALTTPDNRMFIFGGRNQSTVFNDIYKYNM---

---FLHSSIMTLTNQMIVFGGKYNENSTTTTTSTSSSLSSSKVSGAIYIFDAENEKWVNA
TLNSTSSTPDSRYGHTAVLTPLGTMLVFAGNDSTSNAVSSVWRYSIEFSKWEFVSSIGSG
GPDARSGHTSITTLFNTMITFGGQSSGTKYYNDLYKYNIINSVLRSSSDGTTLVVLLSLV
GAMIIGLCFALDYITEKNEIARLERLEKDAMLKI


Translated Amino Acid sequence (All Frames)
Frame A:
iiel*incgilylfcslsyi*tlyk*i*inh*fifcyyrfvysmfqkvsvil*qivglql
*yqvlkmhqkqyhyiqqh*tqliiq*lylvvkiliiyqiii*qyti*fkihg*qrikmqi
iqn*iyqvqyhlnvmamll*qhliieclflvveinqlflmifiniiw---

---FLHSSIMTLTNQMIVFGGKYNENSTTTTTSTSSSLSSSKVSGAIYIFDAENEKWVNA
TLNSTSSTPDSRYGHTAVLTPLGTMLVFAGNDSTSNAVSSVWRYSIEFSKWEFVSSIGSG
GPDARSGHTSITTLFNTMITFGGQSSGTKYYNDLYKYNIINSVLRSSSDGTTLVVLLSLV
GAMIIGLCFALDYITEKNEIARLERLEKDAMLKI

Frame B:
llnyk*ivvyyiyfvv*vifklyinkye*tinlyfviivlfiqcfkkfq*fcnr*ldync
niry*kctkssiitfssikpn**yndciww*rf*sftk**fnnirfnsrfmvske*kcks
ykikftrfnti*tlwpccfnnt***nvyfww*ksincf**yl*i*y---

---fythq**h*lik**fsvvnimrivlpllhqhhhhyhhqklvvqfifsmqrmrng*mq
h*iphhqhqiqdmatply*hhwaqcwyllvmiqlrmqfhqfgdtv*slvngnsfqvlvvv
vlmldqailq*prfsil*lhlvvkvlalniimisiniis*iqfldlllmvqlwlyy*vll
vl*slvyvsl*iislkrmklqd*kd*kkmlc*k

Frame C:
y*tinklwyiisil*fklylnfi*INMNKPLIYILLLSFCLFNVSKSFSNFVTDSWITIV
ISGTENAPKAVSLHSAALNPINNTMIVFGGKDSDHLPNNNLTIYDLIQDSWLAKNKNANH
TKLNLPGSIPSERYGHVALTTPDNRMFIFGGRNQSTVFNDIYKYNM---

---ftlinndin*sndsfrw*i**e*yyhyyiniiiiiiiks*wcnlyfrcre*emgkcn
iefhiintrfkiwphrcidtighnvgicw**fnfecsfisleiqyrv**mgirfkyw*ww
s*c*irpyfnnhafqyydyiwwskfwh*il**sl*i*yhkfss*iff*wynfgciikscw
cydhwfmfrfrlyh*ke*nckirkirkrcyakn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09615-1 (Contig-U09615-1Q)
/CSM_Contig/Contig-U09615-1Q.Seq.d
(1144 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09615-1 (Contig-U09615-1Q) /CSM_Contig/Conti... 1122 0.0
Contig-U09660-1 (Contig-U09660-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U13574-1 (Contig-U13574-1Q) /CSM_Contig/Conti... 36 0.081
Contig-U12737-1 (Contig-U12737-1Q) /CSM_Contig/Conti... 36 0.081
Contig-U12191-1 (Contig-U12191-1Q) /CSM_Contig/Conti... 36 0.081
Contig-U11802-1 (Contig-U11802-1Q) /CSM_Contig/Conti... 36 0.081
Contig-U11577-1 (Contig-U11577-1Q) /CSM_Contig/Conti... 36 0.081
Contig-U11448-1 (Contig-U11448-1Q) /CSM_Contig/Conti... 36 0.081
Contig-U11206-1 (Contig-U11206-1Q) /CSM_Contig/Conti... 36 0.081
Contig-U11098-1 (Contig-U11098-1Q) /CSM_Contig/Conti... 36 0.081

>Contig-U09615-1 (Contig-U09615-1Q) /CSM_Contig/Contig-U09615-1Q.Seq.d
Length = 1144

Score = 1122 bits (566), Expect = 0.0
Identities = 596/596 (100%)
Strand = Plus / Plus


Query: 1 attattgaactataaataaattgtggtatattatatctattttgtagtttaagttatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attattgaactataaataaattgtggtatattatatctattttgtagtttaagttatatt 60


Query: 61 taaactttatataaataaatatgaataaaccattaatttatattttgttattatcgtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaactttatataaataaatatgaataaaccattaatttatattttgttattatcgtttt 120


Query: 121 gtttattcaatgtttcaaaaagtttcagtaattttgtaacagatagttggattacaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtttattcaatgtttcaaaaagtttcagtaattttgtaacagatagttggattacaattg 180


Query: 181 taatatcaggtactgaaaatgcaccaaaagcagtatcattacattcagcagcattaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taatatcaggtactgaaaatgcaccaaaagcagtatcattacattcagcagcattaaacc 240


Query: 241 caattaataatacaatgattgtatttggtggtaaagattctgatcatttaccaaataata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caattaataatacaatgattgtatttggtggtaaagattctgatcatttaccaaataata 300


Query: 301 atttaacaatatacgatttaattcaagattcatggttagcaaagaataaaaatgcaaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atttaacaatatacgatttaattcaagattcatggttagcaaagaataaaaatgcaaatc 360


Query: 361 atacaaaattaaatttaccaggttcaataccatctgaacgttatggccatgttgctttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atacaaaattaaatttaccaggttcaataccatctgaacgttatggccatgttgctttaa 420


Query: 421 caacacctgataatagaatgtttatttttggtggtagaaatcaatcaactgtttttaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caacacctgataatagaatgtttatttttggtggtagaaatcaatcaactgtttttaatg 480


Query: 481 atatttataaatataatatggnnnnnnnnnntttttacactcatcaataatgacattaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atatttataaatataatatggnnnnnnnnnntttttacactcatcaataatgacattaac 540


Query: 541 taatcaaatgatagttttcggtggtaaatataatgagaatagtactaccactacta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taatcaaatgatagttttcggtggtaaatataatgagaatagtactaccactacta 596


Score = 1029 bits (519), Expect = 0.0
Identities = 519/519 (100%)
Strand = Plus / Plus


Query: 626 aaagttagtggtgcaatttatattttcgatgcagagaatgagaaatgggtaaatgcaaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaagttagtggtgcaatttatattttcgatgcagagaatgagaaatgggtaaatgcaaca 685


Query: 686 ttgaattccacatcatcaacaccagattcaagatatggccacaccgctgtattgacacca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttgaattccacatcatcaacaccagattcaagatatggccacaccgctgtattgacacca 745


Query: 746 ttgggcacaatgttggtatttgctggtaatgattcaacttcgaatgcagtttcatcagtt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttgggcacaatgttggtatttgctggtaatgattcaacttcgaatgcagtttcatcagtt 805


Query: 806 tggagatacagtatagagtttagtaaatgggaattcgtttcaagtattggtagtggtggt 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tggagatacagtatagagtttagtaaatgggaattcgtttcaagtattggtagtggtggt 865


Query: 866 cctgatgctagatcaggccatacttcaataaccacgcttttcaatactatgattacattt 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cctgatgctagatcaggccatacttcaataaccacgcttttcaatactatgattacattt 925


Query: 926 ggtggtcaaagttctggcactaaatattataatgatctctataaatataatatcataaat 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ggtggtcaaagttctggcactaaatattataatgatctctataaatataatatcataaat 985


Query: 986 tcagttcttagatcttcttctgatggtacaactttggttgtattattaagtcttgttggt 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 tcagttcttagatcttcttctgatggtacaactttggttgtattattaagtcttgttggt 1045


Query: 1046 gctatgatcattggtttatgtttcgctttagattatatcactgaaaagaatgaaattgca 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 gctatgatcattggtttatgtttcgctttagattatatcactgaaaagaatgaaattgca 1105


Query: 1106 agattagaaagattagaaaaagatgctatgctaaaaata 1144
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 agattagaaagattagaaaaagatgctatgctaaaaata 1144


Score = 32.2 bits (16), Expect = 1.3
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 955 taatgatctctataaatataatat 978
||||||| | ||||||||||||||
Sbjct: 476 taatgatatttataaatataatat 499


Score = 32.2 bits (16), Expect = 1.3
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 476 taatgatatttataaatataatat 499
||||||| | ||||||||||||||
Sbjct: 955 taatgatctctataaatataatat 978


>Contig-U09660-1 (Contig-U09660-1Q) /CSM_Contig/Contig-U09660-1Q.Seq.d
Length = 1801

Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 77 aaatatgaataaaccatta 95
|||||||||||||||||||
Sbjct: 628 aaatatgaataaaccatta 646


>Contig-U13574-1 (Contig-U13574-1Q) /CSM_Contig/Contig-U13574-1Q.Seq.d
Length = 629

Score = 36.2 bits (18), Expect = 0.081
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1111 agaaagattagaaaaaga 1128
||||||||||||||||||
Sbjct: 31 agaaagattagaaaaaga 48


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,422
Number of Sequences: 6905
Number of extensions: 22422
Number of successful extensions: 2529
Number of sequences better than 10.0: 275
length of query: 1144
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1128
effective length of database: 5,564,391
effective search space: 6276633048
effective search space used: 6276633048
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA
Query= Contig-U09615-1 (Contig-U09615-1Q) /CSM_Contig/Contig-U09615-1Q.Seq.d
(1144 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ431199) Dictyostelium discoideum cDNA clone:ddv13p03, 3' ... 1029 0.0 2
(BJ412877) Dictyostelium discoideum cDNA clone:ddv13p03, 5' ... 763 0.0 2
(BJ346552) Dictyostelium discoideum cDNA clone:dda24e11, 3' ... 622 e-174 1
(AC099786) Homo sapiens chromosome 1 clone RP11-510C10, comp... 34 0.14 7
(EJ117098) 1092343357757 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.19 1
(AM488084) Vitis vinifera contig VV78X072632.3, whole genome... 42 0.41 2
(AC177059) Strongylocentrotus purpuratus clone R3-4004E15, W... 36 0.41 2
(CU464002) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.60 4
(CZ829015) OC__Ba0210C12.f OC__Ba Oryza coarctata genomic cl... 34 0.62 3
(BV497149) S217P61022FH11.T0 Noemie Pan troglodytes troglody... 48 0.74 1
(EU339293) Dictyostelium purpureum strain WS321 NADH dehydro... 48 0.74 1
(AC125877) Rattus norvegicus clone CH230-485B23, WORKING DRA... 48 0.74 1
(AC095945) Rattus norvegicus clone CH230-11A3, WORKING DRAFT... 48 0.74 1
(FH726733) CHO_OF5090xi03r1.ab1 CHO_OF5 Nicotiana tabacum ge... 48 0.74 1
(AM617761) Entamoeba invadens IP1 GSS, clone inv102h01.q1k. 48 0.74 1
(EJ779343) 1093011913683 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.74 1
(EJ764598) 1092963178837 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.74 1
(DE592402) Bombyx mori genomic DNA, Fosmid clone:GBMFno246_p... 48 0.74 1
(CT009443) Equus caballus GSS, BAC clone CH241-107N13, SP6 e... 48 0.74 1
(CT005792) Equus caballus GSS, BAC clone CH241-107E15, T7 en... 48 0.74 1
(AZ542606) ENTGA25TF Entamoeba histolytica Sheared DNA Entam... 36 0.76 2
(L36900) Saccharomyces cerevisiae mitochondrion transfer RNA... 34 0.77 5
(AZ533038) ENTDB22TF Entamoeba histolytica Sheared DNA Entam... 36 0.78 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.82 10
(AC116352) Homo sapiens chromosome 5 clone RP11-452C14, WORK... 40 0.84 3
(CZ708556) OC__Ba0028M05.r OC__Ba Oryza coarctata genomic cl... 34 0.97 3
(CU466369) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.0 6
(CP000703) Staphylococcus aureus subsp. aureus JH9, complete... 32 1.3 2
(CP000736) Staphylococcus aureus subsp. aureus JH1, complete... 32 1.3 2
(BX571856) Staphylococcus aureus subsp. aureus strain MRSA25... 32 1.3 2
(AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp... 32 1.3 2
(AP009351) Staphylococcus aureus subsp. aureus str. Newman D... 32 1.3 2
(BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com... 32 1.3 2
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151... 32 1.3 2
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 32 1.3 2
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 32 1.3 2
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp... 32 1.3 2
(BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com... 32 1.3 2
(CP000046) Staphylococcus aureus subsp. aureus COL, complete... 32 1.3 2
(BX571857) Staphylococcus aureus strain MSSA476, complete ge... 32 1.3 2
(AJ938182) Staphylococcus aureus RF122 complete genome. 32 1.3 2
(BX537291) Zebrafish DNA sequence from clone DKEY-127K10 in ... 40 1.4 6
(AL954717) Zebrafish DNA sequence from clone CH211-215E6 in ... 32 1.5 2
(AC104343) Homo sapiens chromosome 8, clone RP11-822K17, com... 36 1.5 2
(CR450736) Zebrafish DNA sequence from clone DKEYP-27G9 in l... 32 1.5 2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 1.5 11
(AL954668) Zebrafish DNA sequence from clone BUSM1-179B16 in... 32 1.5 2
(AR535609) Sequence 171 from patent US 6737248. 32 1.7 2
(AR354053) Sequence 171 from patent US 6593114. 32 1.7 2
(Y14816) Staphylococcus aureus DNA for ORF231, ORF141, ORF47... 32 1.8 2
(DD119779) STAPHYLOCOCCUS AUREUS PROTEINS AND NUCLEIC ACIDS. 32 2.0 2
(CS708331) Sequence 871 from Patent EP1829892. 32 2.0 2
(AX617908) Sequence 871 from Patent WO02094868. 32 2.0 2
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 30 2.1 12
(CZ783124) OC__Ba0145E05.r OC__Ba Oryza coarctata genomic cl... 42 2.4 2
(DX454425) MAMA757TF MA4 Musa acuminata genomic clone MA4-2J... 44 2.8 2
(CR678065) Zebrafish DNA sequence from clone DKEY-238D19 in ... 46 2.9 1
(BX005366) Zebrafish DNA sequence from clone DKEY-222J15 in ... 46 2.9 1
(AM455824) Vitis vinifera contig VV78X138031.14, whole genom... 46 2.9 1
(AM448856) Vitis vinifera contig VV78X105691.4, whole genome... 46 2.9 1
(AC174747) Bos taurus clone CH240-193H3, *** SEQUENCING IN P... 46 2.9 1
(DU221030) 1098553746036 CHORI-243 Ovis aries genomic clone ... 46 2.9 1
(DU221018) 1098553746024 CHORI-243 Ovis aries genomic clone ... 46 2.9 1
(BE683042) 181486 MARC 4BOV Bos taurus cDNA 5', mRNA sequence. 46 2.9 1
(J01462) Yeast (S.cerevisiae) mitochondrial Ser-tRNA and ATP... 34 3.0 5
(AX344565) Sequence 16 from Patent WO0200932. 38 3.3 11
(AF209182) Homo sapiens Xp-probe P20 sequence. 44 3.4 2
(DW281863) UI-S-HH0-adt-a-03-0-UI.s1 UI-S-HH0 Euprymna scolo... 32 3.5 3
(AC202213) Acyrthosiphon pisum BAC VMRC38-30-A2 (Benaroya R... 40 4.2 4
(CU062601) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.4 7
(CR456633) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 4.4 9
(AG448022) Mus musculus molossinus DNA, clone:MSMg01-331N04.... 32 4.5 3
(BZ069723) lki57b05.b1 B.oleracea002 Brassica oleracea genom... 34 4.9 3
(AC027342) Homo sapiens chromosome 5 clone CTD-2294O13, comp... 38 5.1 5
(AP002356) Homo sapiens genomic DNA, chromosome 11q clone:CT... 40 6.3 5
(EK380431) 1095469459736 Global-Ocean-Sampling_GS-31-01-01-1... 34 7.3 2
(EK368612) 1095469407517 Global-Ocean-Sampling_GS-31-01-01-1... 34 7.4 2
(EK398808) 1095469531831 Global-Ocean-Sampling_GS-31-01-01-1... 34 7.4 2
(CZ688044) OA_BBa0191O03.r OA_BBa Oryza alta genomic clone O... 34 7.5 2
(AC022994) Homo sapiens chromosome 11, clone RP11-735P2, com... 44 8.4 3
(DQ518908) Campylobacter jejuni strain GB31 lipooligosacchar... 36 8.4 2
(AC171568) Bos taurus clone CH240-262E4, WORKING DRAFT SEQUE... 34 8.4 8
(AY962325) Campylobacter jejuni subsp. jejuni strain GC149 L... 36 8.4 2
(AY044868) Campylobacter jejuni heptosyltransferase I (waaC)... 36 8.4 2
(GC474820) Sequence 1 from patent US 7384771. 36 8.4 2
(EA756499) Sequence 1 from patent US 7371838. 36 8.4 2
(EA133033) Sequence 1 from patent US 7220848. 36 8.4 2
(EA128404) Sequence 1 from patent US 7217549. 36 8.4 2
(EA127595) Sequence 1 from patent US 7211657. 36 8.4 2
(EA123797) Sequence 1 from patent US 7208304. 36 8.4 2
(EA114795) Sequence 1 from patent US 7202353. 36 8.4 2
(EA096249) Sequence 1 from patent US 7192756. 36 8.4 2
(EA093468) Sequence 1 from patent US 7189836. 36 8.4 2
(EA061903) Sequence 1 from patent US 7169914. 36 8.4 2
(EA060609) Sequence 1 from patent US 7169593. 36 8.4 2
(EA059708) Sequence 1 from patent US 7166717. 36 8.4 2
(EA028012) Sequence 1 from patent US 7138258. 36 8.4 2
(CS299359) Sequence 1 from Patent EP1652927. 36 8.4 2
(BD249790) Campylobacter glycolsyltransferases for biosynthe... 36 8.4 2
(AX934424) Sequence 1 from Patent WO02074942. 36 8.4 2

>(BJ431199) Dictyostelium discoideum cDNA clone:ddv13p03, 3' end,
single read.
Length = 634

Score = 1029 bits (519), Expect(2) = 0.0
Identities = 519/519 (100%)
Strand = Plus / Minus


Query: 626 aaagttagtggtgcaatttatattttcgatgcagagaatgagaaatgggtaaatgcaaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaagttagtggtgcaatttatattttcgatgcagagaatgagaaatgggtaaatgcaaca 461


Query: 686 ttgaattccacatcatcaacaccagattcaagatatggccacaccgctgtattgacacca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttgaattccacatcatcaacaccagattcaagatatggccacaccgctgtattgacacca 401


Query: 746 ttgggcacaatgttggtatttgctggtaatgattcaacttcgaatgcagtttcatcagtt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgggcacaatgttggtatttgctggtaatgattcaacttcgaatgcagtttcatcagtt 341


Query: 806 tggagatacagtatagagtttagtaaatgggaattcgtttcaagtattggtagtggtggt 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tggagatacagtatagagtttagtaaatgggaattcgtttcaagtattggtagtggtggt 281


Query: 866 cctgatgctagatcaggccatacttcaataaccacgcttttcaatactatgattacattt 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cctgatgctagatcaggccatacttcaataaccacgcttttcaatactatgattacattt 221


Query: 926 ggtggtcaaagttctggcactaaatattataatgatctctataaatataatatcataaat 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ggtggtcaaagttctggcactaaatattataatgatctctataaatataatatcataaat 161


Query: 986 tcagttcttagatcttcttctgatggtacaactttggttgtattattaagtcttgttggt 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tcagttcttagatcttcttctgatggtacaactttggttgtattattaagtcttgttggt 101


Query: 1046 gctatgatcattggtttatgtttcgctttagattatatcactgaaaagaatgaaattgca 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 gctatgatcattggtttatgtttcgctttagattatatcactgaaaagaatgaaattgca 41


Query: 1106 agattagaaagattagaaaaagatgctatgctaaaaata 1144
|||||||||||||||||||||||||||||||||||||||
Sbjct: 40 agattagaaagattagaaaaagatgctatgctaaaaata 2

Score = 168 bits (85), Expect(2) = 0.0
Identities = 85/85 (100%)
Strand = Plus / Minus


Query: 512 tttttacactcatcaataatgacattaactaatcaaatgatagttttcggtggtaaatat 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tttttacactcatcaataatgacattaactaatcaaatgatagttttcggtggtaaatat 575


Query: 572 aatgagaatagtactaccactacta 596
|||||||||||||||||||||||||
Sbjct: 574 aatgagaatagtactaccactacta 550

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,285,711,138
Number of extensions: 78630298
Number of successful extensions: 6420983
Number of sequences better than 10.0: 123
Length of query: 1144
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1120
Effective length of database: 97,308,875,965
Effective search space: 108985941080800
Effective search space used: 108985941080800
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09615-1 (Contig-U09615-1Q) /CSM_Contig/Contig-U09615-1Q.Seq.d
(1144 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

FM992688_14(FM992688|pid:none) Candida dubliniensis CD36 chromos... 55 2e-16
S68824(S68824)rngB protein, cytosolic - slime mold (Dictyosteliu... 51 4e-11
(Q7M3S9) RecName: Full=RING finger protein B; Short=Pro... 51 5e-11
AM910994_372(AM910994|pid:none) Plasmodium knowlesi strain H chr... 50 1e-08
AM502242_148(AM502242|pid:none) Leishmania infantum chromosome 24. 48 1e-07
AM494961_217(AM494961|pid:none) Leishmania braziliensis chromoso... 49 2e-07
CR954213_267(CR954213|pid:none) Ostreococcus tauri strain OTTH05... 59 3e-07
(Q8TBB5) RecName: Full=Kelch domain-containing protein 4; &BC02... 59 3e-07
AK023986_1(AK023986|pid:none) Homo sapiens cDNA FLJ13924 fis, cl... 58 7e-07
(P80197) RecName: Full=Actin-fragmin kinase; Short=AFK;... 58 7e-07
BC001044_1(BC001044|pid:none) Homo sapiens kelch domain containi... 57 9e-07
(Q5R8W1) RecName: Full=Kelch domain-containing protein 4; &CR85... 57 1e-06
BT055017_1(BT055017|pid:none) Zea mays full-length cDNA clone ZM... 57 2e-06
AB055250_1(AB055250|pid:none) Macaca fascicularis brain cDNA, cl... 57 2e-06
CP000593_247(CP000593|pid:none) Ostreococcus lucimarinus CCE9901... 56 3e-06
AK226209_1(AK226209|pid:none) Arabidopsis thaliana mRNA for RanG... 55 4e-06
AC009176_17(AC009176|pid:none) Arabidopsis thaliana chromosome I... 55 4e-06
AM910991_203(AM910991|pid:none) Plasmodium knowlesi strain H chr... 55 5e-06
CR548612_211(CR548612|pid:none) Paramecium tetraurelia macronucl... 55 6e-06
AK316853_1(AK316853|pid:none) Arabidopsis thaliana AT5G18590 mRN... 53 2e-05
CR940347_1105(CR940347|pid:none) Theileria annulata strain Ankar... 53 2e-05
BC062489_1(BC062489|pid:none) Xenopus tropicalis kelch domain co... 53 2e-05
BT070350_1(BT070350|pid:none) Picea sitchensis clone WS02721_L10... 52 3e-05
(O14248) RecName: Full=Tip elongation aberrant protein 3; AltNam... 51 7e-05
AM920427_1649(AM920427|pid:none) Penicillium chrysogenum Wiscons... 51 9e-05
(Q9BQ90) RecName: Full=Kelch domain-containing protein 3; AltNam... 50 1e-04
BC012987_1(BC012987|pid:none) Homo sapiens kelch domain containi... 50 1e-04
BC009460_1(BC009460|pid:none) Homo sapiens kelch domain containi... 50 1e-04
BC068372_1(BC068372|pid:none) Danio rerio zgc:85727, mRNA (cDNA ... 50 1e-04
AY160095_1(AY160095|pid:none) Dictyostelium discoideum nucleotid... 50 1e-04
CR956379_15(CR956379|pid:none) Pig DNA sequence from clone CH242... 50 1e-04
CR956379_13(CR956379|pid:none) Pig DNA sequence from clone CH242... 50 1e-04
CR956379_16(CR956379|pid:none) Pig DNA sequence from clone CH242... 50 1e-04
BT054403_1(BT054403|pid:none) Zea mays full-length cDNA clone ZM... 49 3e-04
BT065676_1(BT065676|pid:none) Zea mays full-length cDNA clone ZM... 49 3e-04
AC116956_60(AC116956|pid:none) Dictyostelium discoideum chromoso... 49 3e-04
BC012312_1(BC012312|pid:none) Mus musculus kelch domain containi... 49 4e-04
(Q921I2) RecName: Full=Kelch domain-containing protein 4; &BC02... 49 4e-04
(Q6AXB2) RecName: Full=Rab9 effector protein with Kelch motifs; ... 49 4e-04
EU973128_1(EU973128|pid:none) Zea mays clone 393745 unknown mRNA. 48 6e-04
AP005578_9(AP005578|pid:none) Oryza sativa Japonica Group genomi... 48 6e-04
AC115604_14(AC115604|pid:none) Dictyostelium discoideum chromoso... 48 7e-04
AK100499_1(AK100499|pid:none) Oryza sativa Japonica Group cDNA c... 48 7e-04
AF412054_1(AF412054|pid:none) Arabidopsis thaliana AT5g50310/MXI... 48 7e-04
AC159405_35(AC159405|pid:none) Trypanosoma brucei chromosome 8 c... 47 0.001
AL606623_6(AL606623|pid:none) Oryza sativa genomic DNA, chromoso... 47 0.001
BC058359_1(BC058359|pid:none) Mus musculus kelch domain containi... 47 0.001
CR940353_384(CR940353|pid:none) Theileria annulata strain Ankara... 39 0.001
U88869_1(U88869|pid:none) Plasmodium falciparum protein serine/t... 47 0.002
AE014187_628(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 47 0.002
AM440167_1(AM440167|pid:none) Vitis vinifera contig VV78X156992.... 46 0.002
AE014186_249(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 46 0.003
(P50090) RecName: Full=Kelch repeat-containing protein 2; &AY69... 45 0.004
BT070700_1(BT070700|pid:none) Picea sitchensis clone WS02745_C17... 45 0.004
EU643474_13(EU643474|pid:none) Adineta vaga clone Av240_B G-prot... 45 0.004
AM910994_394(AM910994|pid:none) Plasmodium knowlesi strain H chr... 45 0.005
BT061032_1(BT061032|pid:none) Zea mays full-length cDNA clone ZM... 45 0.006
(P38853) RecName: Full=Kelch repeat-containing protein 1; &S467... 45 0.006
CR954216_283(CR954216|pid:none) Ostreococcus tauri strain OTTH05... 45 0.006
EF677521_1(EF677521|pid:none) Picea sitchensis clone WS02770_B01... 45 0.006
BC047023_1(BC047023|pid:none) Homo sapiens Rab9 effector protein... 37 0.007
CR940353_309(CR940353|pid:none) Theileria annulata strain Ankara... 44 0.008
BC153781_1(BC153781|pid:none) Xenopus laevis hypothetical protei... 44 0.008
AM502234_9(AM502234|pid:none) Leishmania infantum chromosome 16. 44 0.011
AM494953_9(AM494953|pid:none) Leishmania braziliensis chromosome... 44 0.011
CP001575_225(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 44 0.014
AM270234_24(AM270234|pid:none) Aspergillus niger contig An11c017... 44 0.014
AP008214_548(AP008214|pid:none) Oryza sativa (japonica cultivar-... 44 0.014
AJ622827_1(AJ622827|pid:none) Emericella nidulans teaA gene for ... 43 0.018
AC003673_11(AC003673|pid:none) Arabidopsis thaliana chromosome 2... 43 0.018
AP008209_3177(AP008209|pid:none) Oryza sativa (japonica cultivar... 43 0.018
CT005255_9(CT005255|pid:none) Leishmania major strain Friedlin, ... 43 0.018
FJ374638_1(FJ374638|pid:none) Brassica rapa subsp. pekinensis ep... 43 0.018
CP000512_375(CP000512|pid:none) Acidovorax citrulli AAC00-1, com... 43 0.018
CP001390_1598(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 39 0.021
EU643473_5(EU643473|pid:none) Adineta vaga clone Av240_A TPR rep... 43 0.024
AF531101_1(AF531101|pid:none) Bos taurus attractin mRNA, complet... 42 0.031
CR382125_673(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 42 0.031
AF412043_1(AF412043|pid:none) Arabidopsis thaliana AT5g04420/T32... 42 0.031
AK317314_1(AK317314|pid:none) Arabidopsis thaliana AT5G04420 mRN... 42 0.031
CU928167_55(CU928167|pid:none) Kluyveromyces thermotolerans stra... 42 0.031
CP000113_5848(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 42 0.031
BC056132_1(BC056132|pid:none) Xenopus laevis kelch domain contai... 42 0.031
AM270133_44(AM270133|pid:none) Aspergillus niger contig An07c016... 42 0.040
AK317016_1(AK317016|pid:none) Arabidopsis thaliana AT2G36360 mRN... 42 0.040
CP001327_194(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 42 0.040
AC079678_5(AC079678|pid:none) Arabidopsis thaliana chromosome 1 ... 42 0.040
AE014187_647(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.052
BC159021_1(BC159021|pid:none) Xenopus tropicalis hypothetical pr... 42 0.053
CT005263_47(CT005263|pid:none) Leishmania major strain Friedlin,... 42 0.053
AM502240_97(AM502240|pid:none) Leishmania infantum chromosome 22. 42 0.053
AJ437480_3(AJ437480|pid:none) Paramecium tetraurelia partial npe... 39 0.062
(Q55A09) RecName: Full=Probable serine/threonine-protein kinase ... 41 0.069
AY371290_1(AY371290|pid:none) Mesembryanthemum crystallinum ZEIT... 41 0.069
AC116989_2(AC116989|pid:none) Dictyostelium discoideum chromosom... 41 0.069
AE014134_1453(AE014134|pid:none) Drosophila melanogaster chromos... 41 0.069
CP000113_1671(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 41 0.069
AJ566620_1(AJ566620|pid:none) Paramecium tetraurelia macronuclea... 41 0.069
Z97074_1(Z97074|pid:none) Homo sapiens mRNA for Rab9 effector p4... 32 0.084
BC065725_1(BC065725|pid:none) Homo sapiens Rab9 effector protein... 32 0.084
AK151503_1(AK151503|pid:none) Mus musculus bone marrow macrophag... 41 0.090
AF218910_1(AF218910|pid:none) Homo sapiens attractin precursor (... 41 0.090
CU633899_57(CU633899|pid:none) Podospora anserina genomic DNA ch... 41 0.090
AL132773_3(AL132773|pid:none) Human DNA sequence from clone RP4-... 41 0.090
AL109805_2(AL109805|pid:none) Human DNA sequence from clone RP4-... 41 0.090
BC003960_1(BC003960|pid:none) Mus musculus F-box protein 42, mRN... 41 0.090
AE017344_264(AE017344|pid:none) Cryptococcus neoformans var. neo... 41 0.090
AK170202_1(AK170202|pid:none) Mus musculus NOD-derived CD11c +ve... 41 0.090
AK302730_1(AK302730|pid:none) Homo sapiens cDNA FLJ58441 complet... 41 0.090
(Q9NTQ3) RecName: Full=Attractin; AltName: Full=Mahogany homolog... 41 0.090
AK150804_1(AK150804|pid:none) Mus musculus bone marrow macrophag... 41 0.090
AF218915_1(AF218915|pid:none) Homo sapiens attractin precursor (... 41 0.090
AK055598_1(AK055598|pid:none) Homo sapiens cDNA FLJ31036 fis, cl... 40 0.12
BC139565_1(BC139565|pid:none) Danio rerio zgc:162310, mRNA (cDNA... 40 0.12
CP000592_153(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 40 0.12
AB037753_1(AB037753|pid:none) Homo sapiens mRNA for KIAA1332 pro... 40 0.12
(Q6P3S6) RecName: Full=F-box only protein 42; &AB384595_1(AB384... 40 0.12
BC043410_1(BC043410|pid:none) Homo sapiens F-box protein 42, mRN... 40 0.12
CP001330_178(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 40 0.12
CR456837_1(CR456837|pid:none) Homo sapiens full open reading fra... 32 0.14
AM427199_1(AM427199|pid:none) Vitis vinifera contig VV78X148195.... 40 0.15
AX405888_1(AX405888|pid:none) Sequence 303 from Patent WO0222660. 40 0.15
CP000249_166(CP000249|pid:none) Frankia sp. CcI3, complete genome. 40 0.15
AE013599_3555(AE013599|pid:none) Drosophila melanogaster chromos... 40 0.15
AK132817_1(AK132817|pid:none) Mus musculus adult male testis cDN... 40 0.20
(Q9CQ33) RecName: Full=Leucine-zipper-like transcriptional regul... 40 0.20
CR940353_551(CR940353|pid:none) Theileria annulata strain Ankara... 40 0.20
AK083411_1(AK083411|pid:none) Mus musculus 9 days embryo whole b... 40 0.20
(Q8N653) RecName: Full=Leucine-zipper-like transcriptional regul... 40 0.20
AM437230_1(AM437230|pid:none) Vitis vinifera contig VV78X027677.... 39 0.26
(Q9LR78) RecName: Full=Serine/threonine-protein phosphatase BSU1... 39 0.26
AF149414_4(AF149414|pid:none) Arabidopsis thaliana BAC T19J18. ... 39 0.26
(Q8W4K1) RecName: Full=tRNA wybutosine-synthesizing protein 2/3/... 39 0.26
BC070638_1(BC070638|pid:none) Xenopus laevis hypothetical protei... 39 0.26
BT069267_1(BT069267|pid:none) Zea mays full-length cDNA clone ZM... 39 0.26
FN392321_305(FN392321|pid:none) Pichia pastoris GS115 chromosome... 34 0.28
AF106861_1(AF106861|pid:none) Homo sapiens attractin-2 (ATRN) mR... 39 0.34
DQ400595_1(DQ400595|pid:none) Bacillus thuringiensis serovar soo... 39 0.34
AC154090_8(AC154090|pid:none) Medicago truncatula clone mth2-92k... 39 0.34
DQ371900_1(DQ371900|pid:none) Glycine max PAS protein ZEITLUPE 1... 39 0.34
AM055943_247(AM055943|pid:none) Toxoplasma gondii RH, genomic DN... 39 0.34
AM494959_94(AM494959|pid:none) Leishmania braziliensis chromosom... 39 0.34
CR382135_742(CR382135|pid:none) Debaryomyces hansenii strain CBS... 39 0.34
AM910994_458(AM910994|pid:none) Plasmodium knowlesi strain H chr... 39 0.44
(Q5Z8K3) RecName: Full=Adagio-like protein 1; &AP003770_17(AP00... 39 0.44
AB023039_6(AB023039|pid:none) Arabidopsis thaliana genomic DNA, ... 39 0.45
(Q9WU60) RecName: Full=Attractin; AltName: Full=Protein mahogany... 39 0.45
BC073038_1(BC073038|pid:none) Xenopus laevis MGC82652 protein, m... 39 0.45
AB093245_1(AB093245|pid:none) Mus musculus mRNA for mKIAA0548 pr... 39 0.45
(Q93XW5) RecName: Full=Nitrile-specifier protein 5; Sho... 39 0.45
BC141054_1(BC141054|pid:none) Mus musculus attractin, mRNA (cDNA... 39 0.45
AL833771_1(AL833771|pid:none) Mouse DNA sequence from clone RP23... 39 0.45
AB062913_1(AB062913|pid:none) Mesocricetus auratus Atrn mRNA for... 38 0.58
AC092557_12(AC092557|pid:none) Oryza sativa chromosome 3 BAC OSJ... 38 0.58
AF416786_1(AF416786|pid:none) Arabidopsis thaliana epithiospecif... 38 0.58
CP000588_384(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 38 0.58
FJ913271_1(FJ913271|pid:none) Hordeum vulgare disease-related F-... 38 0.76
AB038388_1(AB038388|pid:none) Rattus norvegicus Atrn mRNA for at... 38 0.76
CP000909_1874(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 38 0.76
BC119567_1(BC119567|pid:none) Mus musculus kelch domain containi... 38 0.76
AY438272_1(AY438272|pid:none) Plasmodium berghei UOS7/S20 gene, ... 38 0.76
AY051898_1(AY051898|pid:none) Drosophila melanogaster LD38671 fu... 38 0.76
BT050540_1(BT050540|pid:none) Drosophila melanogaster LD14047 fu... 38 0.76
BT011125_1(BT011125|pid:none) Drosophila melanogaster LD07466 fu... 38 0.76
AB081725_1(AB081725|pid:none) Sus scrofa Trop mRNA for Trophinin... 38 0.76
AB081619_1(AB081619|pid:none) Sus scrofa Trop mRNA for Trophinin... 38 0.76
AY085861_1(AY085861|pid:none) Arabidopsis thaliana clone 19110 m... 37 0.99
AE014186_248(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.99
AC117082_8(AC117082|pid:none) Dictyostelium discoideum chromosom... 37 0.99
BC155757_1(BC155757|pid:none) Danio rerio si:dkey-98f17.2, mRNA ... 37 0.99
CP000113_1727(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 37 0.99
AJ720900_1(AJ720900|pid:none) Gallus gallus mRNA for hypothetica... 37 0.99
BC166344_1(BC166344|pid:none) Xenopus tropicalis hypothetical pr... 37 1.3
(Q99PV3) RecName: Full=Muskelin; &AB046442_1(AB046442|pid:none) 37 1.3
DQ400590_1(DQ400590|pid:none) Bacillus thuringiensis serovar nav... 37 1.3
AL929106_6(AL929106|pid:none) Mouse DNA sequence from clone RP23... 37 1.3
AE016816_221(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 37 1.3
CP000587_415(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 37 1.3
AC130810_12(AC130810|pid:none) Medicago truncatula clone mth2-36... 37 1.7
AM494960_66(AM494960|pid:none) Leishmania braziliensis chromosom... 37 1.7
CR382135_814(CR382135|pid:none) Debaryomyces hansenii chromosome... 37 1.7
AK097719_1(AK097719|pid:none) Homo sapiens cDNA FLJ40400 fis, cl... 37 1.7
DQ059298_1(DQ059298|pid:none) Brassica oleracea var. italica epi... 37 1.7
AP007175_120(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 37 1.7
AM920428_417(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 37 1.7
AF072907_1(AF072907|pid:none) Caenorhabditis elegans host cell f... 37 1.7
AK242967_1(AK242967|pid:none) Oryza sativa Japonica Group cDNA, ... 36 2.2
AP007152_14(AP007152|pid:none) Aspergillus oryzae RIB40 genomic ... 36 2.2
AJ851426_1(AJ851426|pid:none) Gallus gallus mRNA for hypothetica... 36 2.2
(Q67UX0) RecName: Full=Putative adagio-like protein 2; &AP00541... 36 2.2
DQ400646_1(DQ400646|pid:none) Bacillus thuringiensis serovar ibe... 36 2.2
AK296347_1(AK296347|pid:none) Homo sapiens cDNA FLJ53345 complet... 36 2.2
CP000590_124(CP000590|pid:none) Ostreococcus lucimarinus CCE9901... 36 2.2
CR954212_161(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 36 2.2
AE016853_1850(AE016853|pid:none) Pseudomonas syringae pv. tomato... 36 2.2
(Q5RB35) RecName: Full=Muskelin; &CR858822_1(CR858822|pid:none) 36 2.2
BC140483_1(BC140483|pid:none) Bos taurus muskelin 1, intracellul... 36 2.2
D87454_1(D87454|pid:none) Human mRNA for KIAA0265 gene, partial ... 36 2.2
AK002024_1(AK002024|pid:none) Homo sapiens cDNA FLJ11162 fis, cl... 36 2.2
(Q9UL63) RecName: Full=Muskelin; &BC067825_1(BC067825|pid:none) 36 2.2
AK122377_1(AK122377|pid:none) Mus musculus mRNA for mKIAA0817 pr... 36 2.2
BC002834_1(BC002834|pid:none) Homo sapiens muskelin 1, intracell... 36 2.2
CP000075_3520(CP000075|pid:none) Pseudomonas syringae pv. syring... 36 2.2
(Q9QYP0) RecName: Full=Multiple epidermal growth factor-like dom... 36 2.2
BC036727_1(BC036727|pid:none) Mus musculus multiple EGF-like-dom... 36 2.2
(Q6PID8) RecName: Full=Kelch domain-containing protein 10; &BC0... 36 2.2
CP000058_3303(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 36 2.2
AM910994_107(AM910994|pid:none) Plasmodium knowlesi strain H chr... 36 2.9
DQ400638_1(DQ400638|pid:none) Bacillus thuringiensis serovar gal... 36 2.9
AY280362_1(AY280362|pid:none) Homo sapiens EGF domain-containing... 36 2.9
T00209(T00209)MEGF8 protein - human (fragment) 36 2.9
BC167576_1(BC167576|pid:none) Xenopus tropicalis hypothetical pr... 36 2.9
AM746676_6862(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 36 2.9
AB011541_1(AB011541|pid:none) Homo sapiens mRNA for MEGF8, parti... 36 2.9
AF047489_1(AF047489|pid:none) Homo sapiens muskelin (MKLN1) mRNA... 36 2.9
CR954207_1(CR954207|pid:none) Ostreococcus tauri strain OTTH0595... 36 2.9
DQ400621_1(DQ400621|pid:none) Bacillus thuringiensis serovar kim... 35 3.8
BC048880_1(BC048880|pid:none) Danio rerio kelch domain containin... 35 3.8
DQ400641_1(DQ400641|pid:none) Bacillus thuringiensis serovar mon... 35 3.8
(Q28DE7) RecName: Full=Kelch domain-containing protein 10; 35 3.8
(O49326) RecName: Full=Nitrile-specifier protein 2; Sho... 35 3.8
CR940347_731(CR940347|pid:none) Theileria annulata strain Ankara... 35 3.8
AM270075_11(AM270075|pid:none) Aspergillus niger contig An04c014... 35 3.8
CR855555_1(CR855555|pid:none) Xenopus tropicalis finished cDNA, ... 35 3.8
AE015451_3117(AE015451|pid:none) Pseudomonas putida KT2440 compl... 35 3.8
AF191645_1(AF191645|pid:none) Helicobacter pylori strain AFNG114... 35 3.8
AK097097_1(AK097097|pid:none) Homo sapiens cDNA FLJ39778 fis, cl... 35 3.8
AM910991_292(AM910991|pid:none) Plasmodium knowlesi strain H chr... 35 3.8
CP000076_959(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co... 35 3.8
CU633871_38(CU633871|pid:none) Podospora anserina genomic DNA ch... 35 4.9
DQ400597_1(DQ400597|pid:none) Bacillus thuringiensis serovar xia... 35 4.9
DQ400655_1(DQ400655|pid:none) Bacillus thuringiensis serovar jin... 35 4.9
BX842633_2(BX842633|pid:none) Neurospora crassa DNA linkage grou... 35 6.4
DQ174778_1(DQ174778|pid:none) Toxoplasma gondii leucine zipper-l... 35 6.4
DQ400611_1(DQ400611|pid:none) Bacillus thuringiensis serovar med... 35 6.4
AF214574_1(AF214574|pid:none) Arabidopsis thaliana myrosinase-bi... 35 6.4
CP001159_136(CP001159|pid:none) Thalassiosira pseudonana CCMP133... 35 6.4
BC082451_1(BC082451|pid:none) Xenopus laevis MGC84191 protein, m... 35 6.4
AY835383_1(AY835383|pid:none) Danio rerio kelch repeat-containin... 35 6.4
EF643232_1(EF643232|pid:none) Phaseolus vulgaris cultivar BAT93 ... 35 6.4
AF479031_1(AF479031|pid:none) Helicobacter pylori strain CH-CTX1... 35 6.4
AM270401_49(AM270401|pid:none) Aspergillus niger contig An18c008... 35 6.4
CP000850_2867(CP000850|pid:none) Salinispora arenicola CNS-205, ... 35 6.4
CR388098_1(CR388098|pid:none) Zebrafish DNA sequence from clone ... 35 6.4
CT573326_2261(CT573326|pid:none) Pseudomonas entomophila str. L4... 35 6.4
EF643233_1(EF643233|pid:none) Phaseolus vulgaris cultivar Jalo E... 35 6.4
AY074550_1(AY074550|pid:none) Arabidopsis thaliana putative jasm... 35 6.4
EF643231_1(EF643231|pid:none) Phaseolus vulgaris genotype G12873... 35 6.4
AC159420_42(AC159420|pid:none) Trypanosoma brucei chromosome 8 c... 35 6.4
DQ400617_1(DQ400617|pid:none) Bacillus thuringiensis serovar nig... 34 8.4
(Q5M7S0) RecName: Full=Putative sodium-coupled neutral amino aci... 34 8.4
DQ400581_1(DQ400581|pid:none) Bacillus thuringiensis serovar sot... 34 8.4
DQ400624_1(DQ400624|pid:none) Bacillus thuringiensis serovar ent... 34 8.4
FM992688_1255(FM992688|pid:none) Candida dubliniensis CD36 chrom... 34 8.4
DQ400602_1(DQ400602|pid:none) Bacillus thuringiensis serovar fuk... 34 8.4
EF595776_5(EF595776|pid:none) Bacillus thuringiensis serovar kur... 34 8.4
DQ400637_1(DQ400637|pid:none) Bacillus thuringiensis serovar kur... 34 8.4
AY740083_1(AY740083|pid:none) Ostreococcus tauri ZTL/AFR-like pr... 34 8.4
EU956778_1(EU956778|pid:none) Zea mays clone 1573668 kelch motif... 34 8.4
(Q5U3Y0) RecName: Full=Kelch domain-containing protein 10; &AK0... 34 8.4
CP000926_2693(CP000926|pid:none) Pseudomonas putida GB-1, comple... 34 8.4
(Q6TDP4) RecName: Full=Kelch-like protein 17; AltName: Full=Acti... 34 8.4
BT066948_1(BT066948|pid:none) Zea mays full-length cDNA clone ZM... 34 8.4
(Q6PAR0) RecName: Full=Kelch domain-containing protein 10; &BC0... 34 8.4
AF418017_1(AF418017|pid:none) Danio rerio muskelin mRNA, complet... 34 8.4
AM502252_189(AM502252|pid:none) Leishmania infantum chromosome 34. 34 8.4
AK010783_1(AK010783|pid:none) Mus musculus ES cells cDNA, RIKEN ... 34 8.4
AK085130_1(AK085130|pid:none) Mus musculus 13 days embryo lung c... 34 8.4
CT005271_234(CT005271|pid:none) Leishmania major strain Friedlin... 34 8.4
AK053834_1(AK053834|pid:none) Mus musculus 0 day neonate eyeball... 34 8.4
BT060837_1(BT060837|pid:none) Zea mays full-length cDNA clone ZM... 34 8.4

>FM992688_14(FM992688|pid:none) Candida dubliniensis CD36 chromosome
1, complete sequence.
Length = 1014

Score = 55.1 bits (131), Expect(2) = 2e-16
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 2/141 (1%)
Frame = +2

Query: 524 SIMTLTNQMIVFGGKYNENXXXXXXXXXXXXXXXKVSGAIYIFDAENEKWVNATLNSTSS 703
S+ N++ VFGG YN KVS +++FDA N+ W T +T
Sbjct: 270 SMSVYKNKVYVFGGVYNNE---------------KVSNDLWVFDAANDTWTQVT--TTGD 312

Query: 704 TPDSRYGHTAVLTPLGTMLVFAGNDSTSNAVSSVWRYSIEFSKWEFV-SSIGSGGPDARS 880
P H++ + M V+ GND SS++ + +W + SS GP R
Sbjct: 313 IPPPVNEHSSCVVD-DRMYVYGGNDFQGIIYSSLYVLDLHTLEWSVLQSSAEKNGPGPRC 371

Query: 881 GHT-SITTLFNTMITFGGQSS 940
GH+ ++ FN ++ GG +
Sbjct: 372 GHSMTLLPRFNKILIMGGDKN 392

Score = 54.7 bits (130), Expect(2) = 2e-16
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Frame = +3

Query: 150 NFVTDSWITIVISGTENAPKAVSLHSAALNPINNTMIVFGGK----DSDHLPNNNLTIYD 317
N+V ++ I + N P V H+A L N IV+GG D++ P+NN ++
Sbjct: 133 NYVAEN---IEVVNNNNPPARVG-HAAVL--CGNAFIVYGGDTVDTDTNGFPDNNFYLF- 185

Query: 318 LIQDSWLAKNKNANHTKLNLPGSI---PSERYGH----VALTTPDNRMFIFGGRNQSTVF 476
N N+ K +P I P+ RYGH ++L +R+++FGG+ ++ VF
Sbjct: 186 -----------NINNHKYTIPSHILNKPNGRYGHTIGVISLNNTSSRLYLFGGQLENDVF 234

Query: 477 NDIYKYNM 500
ND+Y + +
Sbjct: 235 NDLYYFEL 242

Score = 41.2 bits (95), Expect = 0.069
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +3

Query: 207 KAVSLHSAALNPINNTMIVFGGKDSDHLPNNNLTIYDLIQDSWLAKNKNANHTKLNLPGS 386
K L + +++ N + VFGG ++ +N+L ++D D+W T++ G
Sbjct: 262 KPPPLTNHSMSVYKNKVYVFGGVYNNEKVSNDLWVFDAANDTW---------TQVTTTGD 312

Query: 387 IPSERYGHVALTTPDNRMFIFGGRN-QSTVFNDIY 488
IP H + D+RM+++GG + Q +++ +Y
Sbjct: 313 IPPPVNEHSSCVV-DDRMYVYGGNDFQGIIYSSLY 346

Score = 39.3 bits (90), Expect = 0.26
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Frame = +2

Query: 644 YIFDAENEKWVNATLNSTSSTPDSRYGHTAVLTPLG---TMLVFAGNDSTSNAVSSVWRY 814
Y+F+ N K+ + + P+ RYGHT + L + L G ++ + ++ +
Sbjct: 183 YLFNINNHKYTIPS--HILNKPNGRYGHTIGVISLNNTSSRLYLFGGQLENDVFNDLYYF 240

Query: 815 SIEFSK-----WEFVSSIGSGGPDARSGHTSITTLFNTMITFGGQSSGTKYYNDLYKYNI 979
+ K W+ V + P + H S++ N + FGG + K NDL+ ++
Sbjct: 241 ELNSFKSPKATWQLVEPVNDFKPPPLTNH-SMSVYKNKVYVFGGVYNNEKVSNDLWVFDA 299

Query: 980 IN 985
N
Sbjct: 300 AN 301

Score = 37.7 bits (86), Expect = 0.76
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = +3

Query: 162 DSWITIVISGTENAPKAVSLHSAALNPINNTMIVFGGKDSDHLPNNNLTIYDLIQDSWLA 341
D+W + +G + P V+ HS+ + +++ M V+GG D + ++L + DL W
Sbjct: 302 DTWTQVTTTG--DIPPPVNEHSSCV--VDDRMYVYGGNDFQGIIYSSLYVLDLHTLEWSV 357

Query: 342 KNKNANHTKLNLPGSIPSERYGHVALTTPD-NRMFIFGGRNQSTVFNDIYKY 494
+A P R GH P N++ I GG V +D + +
Sbjct: 358 LQSSAEKNG-------PGPRCGHSMTLLPRFNKILIMGGDKNDYVDSDPHNF 402

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,596,181,571
Number of extensions: 30656994
Number of successful extensions: 85676
Number of sequences better than 10.0: 271
Number of HSP's gapped: 85399
Number of HSP's successfully gapped: 471
Length of query: 381
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 251
Effective length of database: 624,409,729
Effective search space: 156726841979
Effective search space used: 156726841979
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.97 gvh: 0.70 alm: 0.16 top: 0.40 tms: 0.07 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.20 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: extracellular, including cell wall
32.0 %: plasma membrane
24.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for Contig-U09615-1 is exc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0