Contig-U01592-1 |
Contig ID |
Contig-U01592-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
gap included |
Contig length |
948 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
2976820 |
End point |
2977709 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
5 |
Number of EST |
6 |
Link to clone list |
U01592 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6. 7 |
Homology vs CSM-cDNA |
|
dna update |
2009. 5. 3 |
Homology vs DNA |
Query= Contig-U01592-1 (Contig-U01592-1Q) /CSM_Contig/Contig-U01592-1Q.Seq.d (958 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AB056714) Dictyostelium discoideum DdPEF-2 mRNA for penta-E... 741 0.0 4 (AF358912) Dictyostelium discoideum apoptosis-linked gene 2 ... 700 0.0 3 (AF358914) Dictyostelium discoideum apoptosis-linked gene 2 ... 482 0.0 4 (AU263641) Dictyostelium discoideum vegetative cDNA clone:VS... 511 0.0 2 (AU263642) Dictyostelium discoideum vegetative cDNA clone:VS... 406 0.0 4 (AU269099) Dictyostelium discoideum vegetative cDNA clone:VS... 670 0.0 2 (AU261940) Dictyostelium discoideum vegetative cDNA clone:VS... 406 0.0 3 (AU036967) Dictyostelium discoideum slug cDNA, clone SSB886. 430 e-141 2 (AU071696) Dictyostelium discoideum slug cDNA, clone SSC304. 428 e-115 1 (AU071608) Dictyostelium discoideum slug cDNA, clone SSB886. 408 e-111 2 (AU051883) Dictyostelium discoideum slug cDNA, clone SSC304. 82 4e-19 2 (AF358911) Dictyostelium discoideum apoptosis-linked gene 2 ... 96 3e-15 1 (AB056713) Dictyostelium discoideum DdPEF-1 mRNA for penta-E... 96 3e-15 1 (AU264221) Dictyostelium discoideum vegetative cDNA clone:VS... 96 3e-15 1 (AU076347) Dictyostelium discoideum slug cDNA, clone SSA625. 96 3e-15 1 (AU038363) Dictyostelium discoideum slug cDNA, clone SSH619. 96 3e-15 1 (C90011) Dictyostelium discoideum slug cDNA, clone SSG888. 96 3e-15 1 (C89854) Dictyostelium discoideum slug cDNA, clone SSG263. 96 3e-15 1 (C89737) Dictyostelium discoideum slug cDNA, clone SSG731. 96 3e-15 1 (AU264222) Dictyostelium discoideum vegetative cDNA clone:VS... 62 1e-09 2 (AF358913) Dictyostelium discoideum apoptosis-linked gene 2 ... 68 2e-08 2 (CU024887) M.truncatula DNA sequence from clone MTH2-174G4 o... 36 0.25 5 (CU468277) M.truncatula DNA sequence *** SEQUENCING CANCELLE... 36 0.51 5 (CU073362) AGENAE Rainbow trout multi-tissues library (tcce)... 48 0.63 1 (CP001291) Cyanothece sp. PCC 7424, complete genome. 48 0.63 1 (CZ932597) 253337 Tomato EcoRI BAC Library Solanum lycopersi... 46 2.5 1 (AC187039) Zea mays chromosome 7 clone CH201-16H14; ZMMBBc00... 40 4.3 4 (DX547595) GH_MBb0078A03f GH_MBb Gossypium hirsutum genomic ... 34 6.2 2 (CJ402951) Molgula tectiformis cDNA, gonad clone:mtgd019e09,... 34 6.3 2 (AC139761) Mus musculus BAC clone RP23-223C23 from 6, comple... 36 6.3 3 (CJ398023) Molgula tectiformis cDNA, gonad clone:mtgd001p20,... 34 6.4 2 (AC158142) Mus musculus chromosome 15, clone RP24-342H15, co... 44 9.8 1 (AC126971) Rattus norvegicus clone CH230-17G21, WORKING DRAF... 44 9.8 1 (CU929932) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.8 1 (AC231852) Oryza minuta clone OM__Ba0211A01, *** SEQUENCING ... 44 9.8 1 (AC181430) Strongylocentrotus purpuratus clone R3-50H14, WOR... 44 9.8 1 (ER766377) SB_BBc149-G08.F SB_BBc Sorghum bicolor genomic 5'... 44 9.8 1 (ER696865) SB_BBc157-O11.R SB_BBc Sorghum bicolor genomic 3'... 44 9.8 1 (ER657905) SB_BBc22-J11.F SB_BBc Sorghum bicolor genomic 5',... 44 9.8 1 (ER653083) SB_BBc99-F01.F SB_BBc Sorghum bicolor genomic 5',... 44 9.8 1 (ER649814) SB_BBc31-C01.F SB_BBc Sorghum bicolor genomic 5',... 44 9.8 1 (ER649142) SB_BBc66-N20.R SB_BBc Sorghum bicolor genomic 3',... 44 9.8 1 (ER647507) SB_BBc216-N12.F SB_BBc Sorghum bicolor genomic 5'... 44 9.8 1 (ER640513) SB_BBc135-I03.F SB_BBc Sorghum bicolor genomic 5'... 44 9.8 1 (ER628371) 1093018379533 Global-Ocean-Sampling_GS-36-01-01-2... 44 9.8 1 (AM637830) Entamoeba dispar GSS, clone dispar48c03.p1k. 44 9.8 1 (EI697346) SB_BBd15-N12.F SB_BBd Sorghum bicolor genomic 5',... 44 9.8 1 (CW460123) fsbb001f207d06f0 Sorghum methylation filtered lib... 44 9.8 1 (FK042896) XABT91681.g1 Gateway compatible cien cDNA library... 44 9.8 1
>(AB056714) Dictyostelium discoideum DdPEF-2 mRNA for penta-EF-hand Ca2+-binding protein, complete cds. Length = 740
Score = 741 bits (374), Expect(4) = 0.0 Identities = 374/374 (100%) Strand = Plus / Plus
Query: 35 aatataaacttttttaattaaatgtacggatacggatatacaccagcagttgtagcacca 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35 aatataaacttttttaattaaatgtacggatacggatatacaccagcagttgtagcacca 94
Query: 95 acagtcatgtcattctcatttgtcccacctcaagcattccaacaatgttggttttactca 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95 acagtcatgtcattctcatttgtcccacctcaagcattccaacaatgttggttttactca 154
Query: 155 ttatacactcaaattcaacaagctcaattatatgaaatgcaatcttggtttatgagagtt 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 155 ttatacactcaaattcaacaagctcaattatatgaaatgcaatcttggtttatgagagtt 214
Query: 215 gatgcaaatcgtagcggaacaattagcagtggtgaattacaatatttaaatattggtggc 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 gatgcaaatcgtagcggaacaattagcagtggtgaattacaatatttaaatattggtggc 274
Query: 275 actcctcttggtattgaaacagctactaaattaattaaagtttttgatcataataaaaat 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 actcctcttggtattgaaacagctactaaattaattaaagtttttgatcataataaaaat 334
Query: 335 ggtcaaattgatttctatgaatatgcagcacttcatcaatttatcaataacctttacaga 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 ggtcaaattgatttctatgaatatgcagcacttcatcaatttatcaataacctttacaga 394
Query: 395 tgttttgttgccaa 408 |||||||||||||| Sbjct: 395 tgttttgttgccaa 408
Score = 406 bits (205), Expect(4) = 0.0 Identities = 205/205 (100%) Strand = Plus / Plus
Query: 416 gtaatttcagtggtaccattgatgcaaatgaaatttataatgcactcattacaagtggat 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 gtaatttcagtggtaccattgatgcaaatgaaatttataatgcactcattacaagtggat 473
Query: 476 tccaattaccattcccaactgttaactaccttttcttaaagttatccccaagtggttatg 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474 tccaattaccattcccaactgttaactaccttttcttaaagttatccccaagtggttatg 533
Query: 536 gccttttattcactcaattcttaaatttatgtgcaaccgtcgctttaactcgttcattat 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 534 gccttttattcactcaattcttaaatttatgtgcaaccgtcgctttaactcgttcattat 593
Query: 596 ttgaatggaatgatccaatgagaac 620 ||||||||||||||||||||||||| Sbjct: 594 ttgaatggaatgatccaatgagaac 618
Score = 105 bits (53), Expect(4) = 0.0 Identities = 53/53 (100%) Strand = Plus / Plus
Query: 621 ctggtgtagtccatttaaatttagctcaactttatgatatcattgctttagtt 673 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 ctggtgtagtccatttaaatttagctcaactttatgatatcattgctttagtt 670
Score = 28.2 bits (14), Expect(4) = 0.0 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 1 ataaaatttataaa 14 |||||||||||||| Sbjct: 1 ataaaatttataaa 14
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 921,466,747 Number of extensions: 54231647 Number of successful extensions: 4283677 Number of sequences better than 10.0: 49 Length of query: 958 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 934 Effective length of database: 99,340,224,878 Effective search space: 92783770036052 Effective search space used: 92783770036052 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.18 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
3 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |