| Contig-U09602-1 |
| Contig ID |
Contig-U09602-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1034 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
512398 |
| End point |
513434 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
2 |
| Link to clone list |
U09602 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.16 |
| Homology vs DNA |
Query= Contig-U09602-1 (Contig-U09602-1Q) /CSM_Contig/Contig-U09602-1Q.Seq.d
(1044 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ428354) Dictyostelium discoideum cDNA clone:ddv11k14, 3' ... 1015 0.0 1
(BJ410208) Dictyostelium discoideum cDNA clone:ddv11k14, 5' ... 876 0.0 1
(EE005563) ROE00014034 Rhizopus oryzae Company Rhizopus oryz... 44 2e-09 3
(EE006723) ROE00000906 Rhizopus oryzae Company Rhizopus oryz... 44 2e-09 3
(EE006665) ROE00003973 Rhizopus oryzae Company Rhizopus oryz... 44 3e-09 3
(CU222525) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 56 7e-09 5
(CQ719770) Sequence 5704 from Patent WO02068579. 52 7e-09 2
(AY757363) Homo sapiens putative L-2-hydroxyglutarate dehydr... 52 9e-09 2
(AR578445) Sequence 621 from patent US 6783969. 52 1e-08 2
(AK292627) Homo sapiens cDNA FLJ76725 complete cds, highly s... 52 1e-08 2
(DD010726) SECRETED REDOX PROTEINS. 52 1e-08 2
(AX376550) Sequence 5 from Patent WO0198332. 52 1e-08 2
(BD157919) Primer for synthesizing full-length cDNA and use ... 52 1e-08 2
(AX879594) Sequence 14499 from Patent EP1074617. 52 1e-08 2
(AK022680) Homo sapiens cDNA FLJ12618 fis, clone NT2RM400166... 52 1e-08 2
(CR859349) Pongo abelii mRNA; cDNA DKFZp469G0920 (from clone... 52 2e-08 2
(CP000806) Cyanothece sp. ATCC 51142 circular chromosome, co... 66 3e-06 1
(EV853154) D.viviparus_35_F04.ab1 Dictyocaulus viviparus Han... 62 4e-05 1
(DY885451) CeleSEQ698 Cunninghamella elegans pBluescript (Ec... 44 5e-05 2
(CP000903) Bacillus weihenstephanensis KBAB4, complete genome. 58 7e-04 1
(FC319496) CAIC7226.fwd CAIC Nematostella vectensis Nemve wh... 46 0.001 3
(BM484444) 538310 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence. 56 0.003 1
(AW785105) 115931 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence. 56 0.003 1
(EW423034) rnca17b_k1.y1 nca Sus scrofa cDNA 5', mRNA sequence. 56 0.003 1
(EV929724) rche33_a11.y1 che Sus scrofa cDNA 5', mRNA sequence. 56 0.003 1
(EJ074557) 1095458111727 Global-Ocean-Sampling_GS-26-01-01-1... 44 0.009 2
(EJ090000) 1095460163525 Global-Ocean-Sampling_GS-26-01-01-1... 44 0.009 2
(BA000019) Nostoc sp. PCC 7120 DNA, complete genome. 54 0.011 1
(CR559159) Pongo abelii mRNA; EST DKFZp468E0216_r1 (from clo... 52 0.011 2
(CU675259) Synthetic construct Homo sapiens gateway clone IM... 52 0.043 1
(BD147515) Primer for synthesizing full-length cDNA and use ... 52 0.043 1
(AX867453) Sequence 2358 from Patent EP1074617. 52 0.043 1
(BC006117) Homo sapiens L-2-hydroxyglutarate dehydrogenase, ... 52 0.043 1
(AL359397) Human chromosome 14 DNA sequence BAC R-247L20 of ... 52 0.043 1
(AK309294) Homo sapiens cDNA, FLJ99335. 52 0.043 1
(AK233783) Sus scrofa mRNA, clone:MLN010027B06, expressed in... 52 0.043 1
(AY410071) Pan troglodytes HCM3768 gene, VIRTUAL TRANSCRIPT,... 52 0.043 1
(AY410070) Homo sapiens HCM3768 gene, VIRTUAL TRANSCRIPT, pa... 52 0.043 1
(DB449654) Homo sapiens testis cDNA, RIKEN full-length enric... 52 0.043 1
(DB121508) Homo sapiens cDNA clone THYMU2030130, 5' end, mRN... 52 0.043 1
(DB114150) Homo sapiens cDNA clone THYMU2019194, 5' end, mRN... 52 0.043 1
(AU125485) Homo sapiens cDNA clone:NT2RM4001666, 5' end, exp... 52 0.043 1
(DA753509) Homo sapiens cDNA clone NT2RP7019737, 5' end, mRN... 52 0.043 1
(DA731741) Homo sapiens cDNA clone NT2RP1000691, 5' end, mRN... 52 0.043 1
(DA669836) Homo sapiens cDNA clone NESOP2002878, 5' end, mRN... 52 0.043 1
(DA645270) Homo sapiens cDNA clone LYMPB2002434, 5' end, mRN... 52 0.043 1
(DA622957) Homo sapiens cDNA clone KIDNE2002210, 5' end, mRN... 52 0.043 1
(DA608701) Homo sapiens cDNA clone IMR322006166, 5' end, mRN... 52 0.043 1
(DA447340) Homo sapiens cDNA clone CTONG2018697, 5' end, mRN... 52 0.043 1
(DA260980) Homo sapiens cDNA clone BRCAN2013104, 5' end, mRN... 52 0.043 1
(DA157973) Homo sapiens cDNA clone BRAMY2017432, 5' end, mRN... 52 0.043 1
(DA145157) Homo sapiens cDNA clone BRAMY2001562, 5' end, mRN... 52 0.043 1
(CV026936) 5035 Full Length cDNA from the Mammalian Gene Col... 52 0.043 1
(CR554683) Pongo abelii mRNA; EST DKFZp469A0614_r1 (from clo... 52 0.043 1
(CN259178) 17000600839323 GRN_PREHEP Homo sapiens cDNA 5', m... 52 0.043 1
(CJ009707) Sus scrofa mRNA, clone:MLN01B060027, 5' end, expr... 52 0.043 1
(BU189807) AGENCOURT_7967565 NIH_MGC_67 Homo sapiens cDNA cl... 52 0.043 1
(BU155575) AGENCOURT_7984584 NIH_MGC_72 Homo sapiens cDNA cl... 52 0.043 1
(BQ050387) AGENCOURT_7050945 NIH_MGC_71 Homo sapiens cDNA cl... 52 0.043 1
(BP202093) Homo sapiens cDNA clone: AMR07360, Sugano cDNA li... 52 0.043 1
(BM807046) AGENCOURT_6552858 NIH_MGC_85 Homo sapiens cDNA cl... 52 0.043 1
(BI333616) 602997432F1 NIH_MGC_12 Homo sapiens cDNA clone IM... 52 0.043 1
(BG421960) 602448717F1 NIH_MGC_14 Homo sapiens cDNA clone IM... 52 0.043 1
(BF441255) 257459 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence. 52 0.043 1
(BF441188) 257369 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence. 52 0.043 1
(BE883619) 601508094F1 NIH_MGC_71 Homo sapiens cDNA clone IM... 52 0.043 1
(BE294650) 601176348F1 NIH_MGC_17 Homo sapiens cDNA clone IM... 52 0.043 1
(BE279451) 601158056F1 NIH_MGC_21 Homo sapiens cDNA clone IM... 52 0.043 1
(BE032825) 132807 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence. 52 0.043 1
(BE032824) 132806 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence. 52 0.043 1
(EW537861) rret19_b3.y1 ret Sus scrofa cDNA 5', mRNA sequence. 52 0.043 1
(EV876867) rdbla0119_n2.y1 bla Sus scrofa cDNA 5', mRNA sequ... 52 0.043 1
(CP000117) Anabaena variabilis ATCC 29413, complete genome. 52 0.043 1
(DN314316) PL06018A1A07 cDNA from juvenile hermaphodites Sch... 48 0.045 2
(DN299900) PL04017B1E02 cDNA from sexually mature hermaphodi... 48 0.045 2
(AC218648) Bos taurus clone CH240-298I18, WORKING DRAFT SEQU... 36 0.10 2
(EJ912287) 1093018543091 Global-Ocean-Sampling_GS-30-02-01-1... 42 0.15 2
(AK113765) Ciona intestinalis cDNA, clone:cicl008j23, full i... 50 0.17 1
(CZ164958) OC__Ba0002I12.f OC__Ba Oryza coarctata genomic cl... 50 0.17 1
(BW345602) Ciona intestinalis cDNA, clone:ciem831b01, 5'end,... 50 0.17 1
(BW264000) Ciona intestinalis cDNA, clone:cign036h09, 5' end... 50 0.17 1
(BW263789) Ciona intestinalis cDNA, clone:cign035h09, 5' end... 50 0.17 1
(BW263680) Ciona intestinalis cDNA, clone:cign035b20, 5' end... 50 0.17 1
(BW222049) Ciona intestinalis cDNA, clone:cilv048h13, 5' end... 50 0.17 1
(BW197299) Ciona intestinalis cDNA, clone:cicl063p18, 5' end... 50 0.17 1
(BW042677) Ciona intestinalis cDNA, clone:cibd050h18, 5' end... 50 0.17 1
(FK062339) XABT125263.b1 Gateway compatible cien cDNA librar... 50 0.17 1
(FF793802) XABT88622.fwd Gateway compatible cien cDNA librar... 50 0.17 1
(FF760431) XABT66467.fwd Gateway compatible cien cDNA librar... 50 0.17 1
(AV954917) Ciona intestinalis cDNA, clone:cicl08j23, 5' end,... 50 0.17 1
(EJ503718) 1095403666293 Global-Ocean-Sampling_GS-28-01-01-1... 42 0.17 2
(EJ549635) 1092959431552 Global-Ocean-Sampling_GS-29-01-01-1... 42 0.19 2
(EJ516340) 1092955095434 Global-Ocean-Sampling_GS-29-01-01-1... 42 0.19 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.21 17
(FC289291) CAGN4921.fwd CAGN Nematostella vectensis Nemve mi... 38 0.33 3
(CP000397) Borrelia afzelii PKo plasmid lp60-2, complete seq... 36 0.40 2
(AM433740) Vitis vinifera, whole genome shotgun sequence, co... 48 0.67 1
(AC174830) Myotis lucifugus clone CH235-234J19, complete seq... 48 0.67 1
(S73909) abmA=actin-based motor [Dictyostelium, Genomic, 340... 48 0.67 1
(AL109758) Human chromosome 14 DNA sequence BAC R-873E2 of l... 48 0.67 1
>(BJ428354) Dictyostelium discoideum cDNA clone:ddv11k14, 3' end,
single read.
Length = 588
Score = 1015 bits (512), Expect = 0.0
Identities = 515/515 (100%)
Strand = Plus / Minus
Query: 460 tagttttttacaatttaaaccagaatttagacatttgattaaaggtaatgtttatccatt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tagttttttacaatttaaaccagaatttagacatttgattaaaggtaatgtttatccatt 527
Query: 520 accaaatgcttcattcccatttttaggtgttcatttcacaaagaggattaatggtgaagt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 accaaatgcttcattcccatttttaggtgttcatttcacaaagaggattaatggtgaagt 467
Query: 580 ttggttaggtccaaatgcggtattatcattcgacagagagggatacaaattcacagattt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttggttaggtccaaatgcggtattatcattcgacagagagggatacaaattcacagattt 407
Query: 640 caatctacacgatactattgatttaattaaaaatcctggtttatttaaattggccaaaaa 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 caatctacacgatactattgatttaattaaaaatcctggtttatttaaattggccaaaaa 347
Query: 700 acattggaaatatggcttaggtgaattgtatagagattttaataaagatcatttcattca 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 acattggaaatatggcttaggtgaattgtatagagattttaataaagatcatttcattca 287
Query: 760 acttttaaaaccatatatgccaaatatcnccgtggacatgttagaatatggaggtagtgg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acttttaaaaccatatatgccaaatatcnccgtggacatgttagaatatggaggtagtgg 227
Query: 820 tgttagaagtcaagcaatttcgaaatctggtgatttaattgaagatttcatttttgatac 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tgttagaagtcaagcaatttcgaaatctggtgatttaattgaagatttcatttttgatac 167
Query: 880 accatcagatgttccaataatacatgtaagaaattcaccttctcctgctgcaacctcttc 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 accatcagatgttccaataatacatgtaagaaattcaccttctcctgctgcaacctcttc 107
Query: 940 acttgcaattgcaattgaaattgtagatttagctc 974
|||||||||||||||||||||||||||||||||||
Sbjct: 106 acttgcaattgcaattgaaattgtagatttagctc 72
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,291,885,162
Number of extensions: 81690275
Number of successful extensions: 6668860
Number of sequences better than 10.0: 164
Length of query: 1044
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1020
Effective length of database: 97,308,875,965
Effective search space: 99255053484300
Effective search space used: 99255053484300
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.26 |
| Homology vs Protein |
Query= Contig-U09602-1 (Contig-U09602-1Q) /CSM_Contig/Contig-U09602-1Q.Seq.d
(1044 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC158515_1(BC158515|pid:none) Xenopus tropicalis hypothetical pr... 177 7e-43
AK022680_1(AK022680|pid:none) Homo sapiens cDNA FLJ12618 fis, cl... 176 9e-43
(A7MBI3) RecName: Full=L-2-hydroxyglutarate dehydrogenase, mitoc... 175 3e-42
AK152450_1(AK152450|pid:none) Mus musculus bone marrow macrophag... 171 4e-41
AK145228_1(AK145228|pid:none) Mus musculus mammary gland RCB-052... 171 4e-41
BX927407_12(BX927407|pid:none) Zebrafish DNA sequence from clone... 171 5e-41
(A8X2R1) RecName: Full=L-2-hydroxyglutarate dehydrogenase, mitoc... 170 9e-41
(Q9N4Z0) RecName: Full=L-2-hydroxyglutarate dehydrogenase, mitoc... 168 2e-40
AK168429_1(AK168429|pid:none) Mus musculus 17 days pregnant adul... 168 2e-40
FN357418_35(FN357418|pid:none) Schistosoma mansoni genome sequen... 164 6e-39
AE014134_3103(AE014134|pid:none) Drosophila melanogaster chromos... 161 4e-38
AP006627_4023(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 158 3e-37
CP001037_1002(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 155 3e-36
CP000806_3357(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 153 8e-36
CP000473_5783(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 152 2e-35
BA000045_2207(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 150 9e-35
CP000117_1105(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 150 9e-35
BA000043_2006(BA000043|pid:none) Geobacillus kaustophilus HTA426... 149 2e-34
CP001344_4886(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 148 3e-34
CP001287_1845(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 147 5e-34
BX294150_235(BX294150|pid:none) Rhodopirellula baltica SH 1 comp... 146 1e-33
CP000038_2618(CP000038|pid:none) Shigella sonnei Ss046, complete... 145 2e-33
CP000266_2632(CP000266|pid:none) Shigella flexneri 5 str. 8401, ... 145 2e-33
AE014075_3133(AE014075|pid:none) Escherichia coli CFT073, comple... 145 3e-33
AP009240_2913(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 145 3e-33
CP000243_2961(CP000243|pid:none) Escherichia coli UTI89, complet... 145 3e-33
AE005174_3533(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 145 3e-33
CU928163_2929(CU928163|pid:none) Escherichia coli UMN026 chromos... 145 3e-33
CP001164_3516(CP001164|pid:none) Escherichia coli O157:H7 str. E... 145 3e-33
A91069(A91069) hypothetical protein ECs3521 [imported] - Escheri... 145 3e-33
CU928162_3037(CU928162|pid:none) Escherichia coli ED1a chromosom... 145 3e-33
CP000820_2186(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 145 3e-33
CP000970_2692(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 145 3e-33
CP000800_2801(CP000800|pid:none) Escherichia coli E24377A, compl... 145 3e-33
(P37339) RecName: Full=Uncharacterized protein ygaF; &AP009048_... 145 3e-33
CP000249_1869(CP000249|pid:none) Frankia sp. CcI3, complete geno... 144 5e-33
CT573213_4428(CT573213|pid:none) Frankia alni str. ACN14A chromo... 144 5e-33
CP000656_3509(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 144 5e-33
CP000802_2643(CP000802|pid:none) Escherichia coli HS, complete g... 144 7e-33
CT573213_3042(CT573213|pid:none) Frankia alni str. ACN14A chromo... 143 1e-32
CP000509_34(CP000509|pid:none) Nocardioides sp. JS614, complete ... 142 1e-32
CP000551_1415(CP000551|pid:none) Prochlorococcus marinus str. AS... 142 3e-32
CP000964_4389(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 141 4e-32
AP006725_978(AP006725|pid:none) Klebsiella pneumoniae NTUH-K2044... 141 4e-32
CP000880_176(CP000880|pid:none) Salmonella enterica subsp. arizo... 138 4e-31
CP000822_3900(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 138 4e-31
CP000886_3369(CP000886|pid:none) Salmonella enterica subsp. ente... 136 1e-30
AE006468_2711(AE006468|pid:none) Salmonella enterica subsp. ente... 136 1e-30
CP001138_2707(CP001138|pid:none) Salmonella enterica subsp. ente... 136 1e-30
CP001144_2808(CP001144|pid:none) Salmonella enterica subsp. ente... 136 1e-30
AM933172_2624(AM933172|pid:none) Salmonella enterica subsp. ente... 136 1e-30
AP009493_3901(AP009493|pid:none) Streptomyces griseus subsp. gri... 134 5e-30
CP000026_2472(CP000026|pid:none) Salmonella enterica subsp. ente... 134 5e-30
CP001127_2735(CP001127|pid:none) Salmonella enterica subsp. ente... 134 7e-30
CP000749_2764(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 133 1e-29
AE016854_36(AE016854|pid:none) Pseudomonas syringae pv. tomato s... 132 2e-29
(Q5R9N7) RecName: Full=L-2-hydroxyglutarate dehydrogenase, mitoc... 131 4e-29
AE003853_146(AE003853|pid:none) Vibrio cholerae O1 biovar eltor ... 131 4e-29
CP000159_2702(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 130 6e-29
AM942759_1042(AM942759|pid:none) Proteus mirabilis strain HI4320... 130 1e-28
CP000060_19(CP000060|pid:none) Pseudomonas syringae pv. phaseoli... 130 1e-28
CP000790_1968(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 129 1e-28
CP000431_4576(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 128 3e-28
AF359557_21(AF359557|pid:none) Pseudomonas syringae pv. maculico... 128 3e-28
BA000038_1475(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, ch... 127 5e-28
AE016796_915(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 127 6e-28
CP000285_1981(CP000285|pid:none) Chromohalobacter salexigens DSM... 127 8e-28
CP000975_501(CP000975|pid:none) Methylacidiphilum infernorum V4,... 126 1e-27
CP000739_455(CP000739|pid:none) Sinorhizobium medicae WSM419 pla... 126 1e-27
AP011115_4723(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 126 1e-27
CP000758_1280(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 126 1e-27
AP006618_5642(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 124 4e-27
AE015451_2884(AE015451|pid:none) Pseudomonas putida KT2440 compl... 124 4e-27
CR378676_221(CR378676|pid:none) Photobacterium profundum SS9 chr... 124 5e-27
CP000454_2135(CP000454|pid:none) Arthrobacter sp. FB24, complete... 123 9e-27
CP001053_1709(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 123 9e-27
CP000474_925(CP000474|pid:none) Arthrobacter aurescens TC1, comp... 123 1e-26
AL591985_102(AL591985|pid:none) Sinorhizobium meliloti 1021 plas... 123 1e-26
CP000510_2576(CP000510|pid:none) Psychromonas ingrahamii 37, com... 120 6e-26
AB3546(AB3546) aminobutyraldehyde dehydrogenase (EC 1.2.1.19) [i... 120 1e-25
CP000912_921(CP000912|pid:none) Brucella suis ATCC 23445 chromos... 120 1e-25
CP000709_832(CP000709|pid:none) Brucella ovis ATCC 25840 chromos... 117 7e-25
AM236083_161(AM236083|pid:none) Rhizobium leguminosarum bv. vici... 115 2e-24
CP000511_203(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1,... 114 4e-24
CT573326_1585(CT573326|pid:none) Pseudomonas entomophila str. L4... 114 6e-24
CP001157_2590(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 114 7e-24
CP001365_2556(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 112 3e-23
CP000949_1594(CP000949|pid:none) Pseudomonas putida W619, comple... 111 5e-23
CP001150_1801(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 109 2e-22
CP000143_2073(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 108 2e-22
CP000577_2104(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 108 2e-22
CP000661_2367(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 108 3e-22
AY060420_1(AY060420|pid:none) Drosophila melanogaster LD39082 fu... 103 4e-22
AM494972_573(AM494972|pid:none) Leishmania braziliensis chromoso... 104 6e-21
AM502254_596(AM502254|pid:none) Leishmania infantum chromosome 36. 103 8e-21
CP001341_3192(CP001341|pid:none) Arthrobacter chlorophenolicus A... 103 1e-20
CT005272_564(CT005272|pid:none) Leishmania major strain Friedlin... 103 1e-20
AJ304858_1(AJ304858|pid:none) Bacteriophage CP-1639 and chromoso... 93 2e-17
CP001020_124(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com... 91 7e-17
CP001147_1897(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 89 3e-16
AE016828_1592(AE016828|pid:none) Coxiella burnetii RSA 493, comp... 89 3e-16
CP000890_1763(CP000890|pid:none) Coxiella burnetii RSA 331, comp... 88 6e-16
CP000361_645(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 86 2e-15
CP000494_6423(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 79 2e-13
CU234118_1145(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 79 2e-13
AE005673_3148(AE005673|pid:none) Caulobacter crescentus CB15, co... 77 8e-13
AM260479_1307(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 77 8e-13
CP001124_2002(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 77 1e-12
CU633749_1212(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 77 1e-12
AE008922_1987(AE008922|pid:none) Xanthomonas campestris pv. camp... 77 1e-12
CP000050_2129(CP000050|pid:none) Xanthomonas campestris pv. camp... 77 1e-12
EF457753_2(EF457753|pid:none) Gossypium hirsutum retrotransposon... 67 1e-12
AM920689_2344(AM920689|pid:none) Xanthomonas campestris pv. camp... 76 2e-12
CP000555_1030(CP000555|pid:none) Methylibium petroleiphilum PM1,... 76 2e-12
CP001052_359(CP001052|pid:none) Burkholderia phytofirmans PsJN c... 75 3e-12
CP000874_1397(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN... 74 6e-12
CP001013_1907(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 74 6e-12
CP000927_816(CP000927|pid:none) Caulobacter sp. K31, complete ge... 74 8e-12
CP000316_2655(CP000316|pid:none) Polaromonas sp. JS666, complete... 74 8e-12
CP000319_1166(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 74 1e-11
CR382130_170(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 73 1e-11
CP000390_1073(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 73 1e-11
CP000680_4229(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 73 1e-11
AE017126_1316(AE017126|pid:none) Prochlorococcus marinus subsp. ... 73 1e-11
CP001281_406(CP001281|pid:none) Thauera sp. MZ1T, complete genome. 73 2e-11
EF457752_2(EF457752|pid:none) Gossypium arboreum alcohol dehydro... 63 2e-11
CP000155_5122(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 72 2e-11
CP000884_3976(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 72 2e-11
CP000570_237(CP000570|pid:none) Burkholderia pseudomallei 668 ch... 72 3e-11
BX571965_251(BX571965|pid:none) Burkholderia pseudomallei strain... 72 3e-11
CP000010_2908(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 72 3e-11
CP000512_2408(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 72 4e-11
CP000312_2454(CP000312|pid:none) Clostridium perfringens SM101, ... 62 4e-11
CP001279_1510(CP001279|pid:none) Nautilia profundicola AmH, comp... 71 5e-11
CP000246_2764(CP000246|pid:none) Clostridium perfringens ATCC 13... 62 6e-11
BA000016_2551(BA000016|pid:none) Clostridium perfringens str. 13... 62 6e-11
CP001089_2517(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 71 7e-11
CP000252_718(CP000252|pid:none) Syntrophus aciditrophicus SB, co... 70 9e-11
CP000585_155(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 70 1e-10
AM167904_2818(AM167904|pid:none) Bordetella avium 197N complete ... 70 1e-10
CP000463_4050(CP000463|pid:none) Rhodopseudomonas palustris BisA... 70 1e-10
CP000267_1608(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 70 1e-10
CP000115_999(CP000115|pid:none) Nitrobacter winogradskyi Nb-255,... 70 1e-10
CP001096_4575(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 69 2e-10
BX572606_157(BX572606|pid:none) Rhodopseudomonas palustris CGA00... 69 2e-10
AM902716_859(AM902716|pid:none) Bordetella petrii strain DSM 128... 69 2e-10
CR954205_155(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 69 2e-10
CP000250_1449(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 69 2e-10
AL445066_192(AL445066|pid:none) Thermoplasma acidophilum complet... 69 2e-10
CP000853_1113(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 60 3e-10
CP000927_4916(CP000927|pid:none) Caulobacter sp. K31, complete g... 69 4e-10
BX897675_16(BX897675|pid:none) Neurospora crassa DNA linkage gro... 69 4e-10
FM209186_5536(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 68 6e-10
AE004091_5141(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 68 6e-10
CP000448_673(CP000448|pid:none) Syntrophomonas wolfei subsp. wol... 67 8e-10
CP000744_5805(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 67 1e-09
AC146910_23(AC146910|pid:none) Medicago truncatula clone mth2-59... 64 1e-09
CP000494_593(CP000494|pid:none) Bradyrhizobium sp. BTAi1, comple... 67 1e-09
AP009385_186(AP009385|pid:none) Burkholderia multivorans ATCC 17... 66 2e-09
CP000440_3083(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 66 2e-09
FN392320_1294(FN392320|pid:none) Pichia pastoris GS115 chromosom... 66 2e-09
CP000866_405(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 66 2e-09
EU016645_28(EU016645|pid:none) Uncultured Group I marine crenarc... 65 4e-09
AP007155_814(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 65 5e-09
AM747720_546(AM747720|pid:none) Burkholderia cenocepacia J2315 c... 65 5e-09
CP001349_5222(CP001349|pid:none) Methylobacterium nodulans ORS 2... 65 5e-09
AM920431_914(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 65 5e-09
CP000853_195(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ... 59 6e-09
EU016655_16(EU016655|pid:none) Uncultured Group I marine crenarc... 64 7e-09
CP001001_3338(CP001001|pid:none) Methylobacterium radiotolerans ... 64 7e-09
EU016665_50(EU016665|pid:none) Uncultured Group I marine crenarc... 64 7e-09
EU961758_1(EU961758|pid:none) Zea mays clone 238116 hypothetical... 64 7e-09
CP000943_207(CP000943|pid:none) Methylobacterium sp. 4-46, compl... 64 9e-09
CP000781_2780(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 64 1e-08
CP000699_4509(CP000699|pid:none) Sphingomonas wittichii RW1, com... 64 1e-08
CP000606_529(CP000606|pid:none) Shewanella loihica PV-4, complet... 64 1e-08
CP000961_628(CP000961|pid:none) Shewanella woodyi ATCC 51908, co... 64 1e-08
CP000908_2573(CP000908|pid:none) Methylobacterium extorquens PA1... 63 2e-08
CP000614_3096(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 62 3e-08
CU459003_4195(CU459003|pid:none) Magnetospirillum gryphiswaldens... 62 3e-08
CP000724_947(CP000724|pid:none) Alkaliphilus metalliredigens QYM... 54 4e-08
CP001029_2601(CP001029|pid:none) Methylobacterium populi BJ001, ... 57 4e-08
AE017226_2624(AE017226|pid:none) Treponema denticola ATCC 35405,... 54 6e-08
CP000774_2504(CP000774|pid:none) Parvibaculum lavamentivorans DS... 61 7e-08
CP001056_978(CP001056|pid:none) Clostridium botulinum B str. Ekl... 60 1e-07
CP001107_2508(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 52 1e-07
CU928170_402(CU928170|pid:none) Kluyveromyces thermotolerans str... 59 2e-07
FM992688_621(FM992688|pid:none) Candida dubliniensis CD36 chromo... 59 4e-07
AY914923_1(AY914923|pid:none) Schistosoma japonicum SJCHGC00781 ... 58 5e-07
CP001083_2349(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 58 6e-07
CP001581_2294(CP001581|pid:none) Clostridium botulinum A2 str. K... 57 1e-06
AE017341_661(AE017341|pid:none) Cryptococcus neoformans var. neo... 57 1e-06
CP000855_205(CP000855|pid:none) Thermococcus onnurineus NA1, com... 41 1e-06
CP001251_21(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, c... 51 1e-06
CP001146_1651(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 49 3e-06
CP001357_1917(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 47 3e-06
CP000916_1062(CP000916|pid:none) Thermotoga neapolitana DSM 4359... 47 4e-06
CP000382_2105(CP000382|pid:none) Clostridium novyi NT, complete ... 50 4e-06
AP006878_1394(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 41 7e-06
AE000512_1408(AE000512|pid:none) Thermotoga maritima MSB8, compl... 44 9e-06
CP000702_1347(CP000702|pid:none) Thermotoga petrophila RKU-1, co... 44 1e-05
AL939130_15(AL939130|pid:none) Streptomyces coelicolor A3(2) com... 54 1e-05
CP000923_996(CP000923|pid:none) Thermoanaerobacter sp. X514, com... 53 2e-05
CR382139_908(CR382139|pid:none) Debaryomyces hansenii strain CBS... 52 3e-05
CP000885_316(CP000885|pid:none) Clostridium phytofermentans ISDg... 52 3e-05
CP000496_313(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 52 4e-05
AE015927_2187(AE015927|pid:none) Clostridium tetani E88, complet... 51 6e-05
CP000962_1126(CP000962|pid:none) Clostridium botulinum A3 str. L... 45 7e-05
CP000246_393(CP000246|pid:none) Clostridium perfringens ATCC 131... 51 8e-05
AJ581564_1(AJ581564|pid:none) Mycoplasma mycoides subsp. mycoide... 49 9e-05
CP000771_679(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 50 2e-04
CP001185_645(CP001185|pid:none) Thermosipho africanus TCF52B, co... 43 6e-04
CP000879_276(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 48 6e-04
AE017308_295(AE017308|pid:none) Mycoplasma mobile 163K complete ... 39 7e-04
CP001098_804(CP001098|pid:none) Halothermothrix orenii H 168, co... 47 0.001
AM910993_322(AM910993|pid:none) Plasmodium knowlesi strain H chr... 45 0.003
AE017244_608(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, c... 43 0.004
AE017332_599(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co... 43 0.004
AE017243_586(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp... 43 0.004
CP000776_1535(CP000776|pid:none) Campylobacter hominis ATCC BAA-... 44 0.007
AE015450_16(AE015450|pid:none) Mycoplasma gallisepticum strain R... 40 0.007
CP000384_3519(CP000384|pid:none) Mycobacterium sp. MCS, complete... 44 0.012
AL445563_264(AL445563|pid:none) Mycoplasma pulmonis (strain UAB ... 39 0.021
CP001145_266(CP001145|pid:none) Coprothermobacter proteolyticus ... 42 0.035
CP001140_878(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 40 0.17
AE015927_22(AE015927|pid:none) Clostridium tetani E88, complete ... 39 0.39
CP001078_10(CP001078|pid:none) Clostridium botulinum E3 str. Ala... 38 0.51
(P47285) RecName: Full=Uncharacterized protein MG039; &C64204(C... 38 0.51
(Q17VT7) RecName: Full=Probable malate:quinone oxidoreductase; ... 38 0.51
CP001056_10(CP001056|pid:none) Clostridium botulinum B str. Eklu... 38 0.51
CP000932_460(CP000932|pid:none) Campylobacter lari RM2100, compl... 38 0.66
AF451898_55(AF451898|pid:none) Heliothis zea virus 1, complete g... 38 0.66
AE000782_1310(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 38 0.66
CP000575_257(CP000575|pid:none) Staphylothermus marinus F1, comp... 37 0.87
(B6JPI8) RecName: Full=Probable malate:quinone oxidoreductase; ... 35 4.3
CP000448_1060(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 35 5.6
AM433366_1(AM433366|pid:none) Vitis vinifera contig VV78X084691.... 35 5.6
CP001365_425(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 35 5.6
(Q6QIY3) RecName: Full=Sodium channel protein type 10 subunit al... 34 7.3
CP001132_1473(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 34 7.3
(O24913) RecName: Full=Malate:quinone oxidoreductase; E... 34 9.6
(Q1CV68) RecName: Full=Probable malate:quinone oxidoreductase; ... 34 9.6
>BC158515_1(BC158515|pid:none) Xenopus tropicalis hypothetical
protein LOC100145085, mRNA (cDNA clone IMAGE:8951602),
partial cds.
Length = 459
Score = 177 bits (448), Expect = 7e-43
Identities = 86/168 (51%), Positives = 121/168 (72%), Gaps = 3/168 (1%)
Frame = +2
Query: 458 GSFLQFKPEFRHLIKGNVYPLPNASFPFLGVHFTKRINGEVWLGPNAVLSFDREGYKFTD 637
G +L KPE +L+KGN+YP+PN FPFLGVHFT R++G VWLGPNA+L+F REGY+ D
Sbjct: 279 GDYLVLKPEKCYLVKGNIYPVPNPRFPFLGVHFTPRMDGSVWLGPNAILAFKREGYRLCD 338
Query: 638 FNLHDTIDLIKNPGLFKLAKKHWKYGLGELYRDFNKDHFIQLLKPYMPNIXVDMLEYGGS 817
FN D + + GL KL K+ YG+GE+YR F + ++ L+ ++P + + + G S
Sbjct: 339 FNARDFKEAVTYSGLHKLVLKNLSYGMGEMYRAFFLNAQLKELQKFIPELSFNDIARGPS 398
Query: 818 GVRSQAISKSGDLIEDFIFDTPS-DVP--IIHVRNSPSPAATSSLAIA 952
GVR+QA+ + G+L++DF+FD S D+ I+HVRN+PSPAATSSLAI+
Sbjct: 399 GVRAQALDRDGNLVDDFVFDGGSGDLANCILHVRNAPSPAATSSLAIS 446
Score = 114 bits (285), Expect(2) = 8e-27
Identities = 52/92 (56%), Positives = 67/92 (72%)
Frame = +2
Query: 92 YDVAXXXXXXXXLATGRELLKRNPKLKIVILEKENEIAPHQSSHNSGVIHCGIYYKPGSL 271
YDV LA+ R+L+ R+P L+ +LEKE EIA HQS HNSGVIH GIYY PGSL
Sbjct: 45 YDVVVVGGGIMGLASARQLILRHPALRFAVLEKEKEIALHQSGHNSGVIHSGIYYTPGSL 104
Query: 272 RAKLCTKGSKLMYDYCNENQINYENCGKLIVA 367
+A+LC +G+ L+Y+YC++ I Y+ CGKLIVA
Sbjct: 105 KARLCVRGAALIYEYCDQKGIPYKQCGKLIVA 136
Score = 30.4 bits (67), Expect(2) = 8e-27
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 372 KKEEFXQLEQLYKRGIENGVPNIKL 446
K+ E +L+ LY+RG++N VP ++L
Sbjct: 138 KQPEIPRLQALYERGLQNNVPGLRL 162
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,436,391,146
Number of extensions: 26637455
Number of successful extensions: 50088
Number of sequences better than 10.0: 242
Number of HSP's gapped: 49948
Number of HSP's successfully gapped: 433
Length of query: 348
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 219
Effective length of database: 627,614,014
Effective search space: 137447469066
Effective search space used: 137447469066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |