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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09581-1
Contig ID Contig-U09581-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09581-1 (Contig-U09581-1Q) /CSM_Contig/Contig-U09581-1Q.Seq.d
AAAAAGCCAGGTGTTGTTACAATTAAAGGTAGTTCATTTTGTTCACAACC
AACTATTACAATTGGTGATGATTCATGCTCACAACCTATACTTTCAGTTG
GTAATGATTATGATAGTTTAACTTGTAATTTCCAATCAAATGCTGGTCTA
TCAAATTCAACATTACTAGTTTCAATCATATGTGATACCATTCAAAATAC
CTCATCTCAATCATTTGTTTATATAAGAGATGATCCATGTCCATCATCAA
GTACAGGTGTTTGTTCAGGTCCAACTAATGGTAAATGTAATGAAGATCAA
AGACAATGTGAATGTAATACTGGTTATTCTGGATTTTCATGTTCAAATAA
AGTAGATACTCAAGTTAAACCACCAATACCAATTATAAATGATACTAAAA
CTGTCATTGAAACTGGTATTGAAACTGGTGTTCAATTTGAAATTGGTATT
ATTCAAATTAGAGAGATTCAAAGTTTTAATAATGATAAAGTTGTAAAATA
TATAAATTTAAAGAATGAGAAATGGAATTTAATTACAAAGTCAACTGATT
TAGATGATATTGTAATTTATACATATG----------AGGTGACACTTTT
ACATTGTTACCAAATTCAGTTAAATATCAAGTTGAAATTATTGAATGGGA
TTTTGGAGCAACATTAAATTCTTTACAAGTTTTATTTGAATCAAAAATTA
CTGCTACCAATAATAATAATAATTGTGATAATGATAATCAAGATCAAGAA
ATTTCTAAAAATATTTTAATGAATGGTCAATCAATTAGAACAATTGAAAT
GAAGAGTATTAATGGTGATATTCTAGTTGGAACATTTTCAAATCGTTTAA
AAATTGATGAAAGAGTAGTTGTTAGTTCAATTGAAATTTTATCACAAGAT
TCTTTATTATCAAGTAATATTTCAACAACACAAAATCAATCAGTAATTCA
AGCTATAACTATAAACTATTTTAAAACAAATGCTATTATCGATCCAAATT
TTGGTGTACTTTTATCAAATGATCAAAATACTCCATCTCCAAATGGTTGT
AATGAAAATACTAATTCATCAAATAAATTTGCATCTTGGAAAATCGCTGT
AATTGTAGTTTGTTCAGTTGTTGGTATTTCATTAATTGTAGTTTCAACCT
CAATAATTTATAGAAAGATTAGAAATAAATCTTTAATTTTAGAAATAAGA
TTAAAATTATCAAAATAAATTTTTGTAACATTAATAATAAATAAN
Gap gap included
Contig length 1235
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2575525
End point 2576764
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09581
List of clone(s) 

est1=VFD420F,1,578
est2=VFD420Z,579,1237
Translated Amino Acid sequence 
KKPGVVTIKGSSFCSQPTITIGDDSCSQPILSVGNDYDSLTCNFQSNAGLSNSTLLVSII
CDTIQNTSSQSFVYIRDDPCPSSSTGVCSGPTNGKCNEDQRQCECNTGYSGFSCSNKVDT
QVKPPIPIINDTKTVIETGIETGVQFEIGIIQIREIQSFNNDKVVKYINLKNEKWNLITK
STDLDDIVIYTY---

---GDTFTLLPNSVKYQVEIIEWDFGATLNSLQVLFESKITATNNNNNCDNDNQDQEISK
NILMNGQSIRTIEMKSINGDILVGTFSNRLKIDERVVVSSIEILSQDSLLSSNISTTQNQ
SVIQAITINYFKTNAIIDPNFGVLLSNDQNTPSPNGCNENTNSSNKFASWKIAVIVVCSV
VGISLIVVSTSIIYRKIRNKSLILEIRLKLSK*ifvtliinx
Translated Amino Acid sequence (All Frames) 
Frame A:
KKPGVVTIKGSSFCSQPTITIGDDSCSQPILSVGNDYDSLTCNFQSNAGLSNSTLLVSII
CDTIQNTSSQSFVYIRDDPCPSSSTGVCSGPTNGKCNEDQRQCECNTGYSGFSCSNKVDT
QVKPPIPIINDTKTVIETGIETGVQFEIGIIQIREIQSFNNDKVVKYINLKNEKWNLITK
STDLDDIVIYTY---

---r*hfyivtkfs*iss*ny*mgfwsnikfftsfi*iknycyq****l****srsrnf*
kyfnewsin*nn*neey*w*ysswnifksfkn**kssc*fn*nfitrffiik*yfnntks
isnssynyklf*nkcyyrskfwctfik*skysiskwl**ky*fik*icilenrcncslfs
cwyfincsfnlnnl*kd*k*ifnfrnkikiikinfcninnk*

Frame B:
ksqvllqlkvvhfvhnqllqlvmihahnlyfqlvmimiv*lvisnqmlvyqiqhy*fqsy
vipfkiphlnhlfi*emihvhhqvqvfvqvqlmvnvmkikdnvnvilvildfhvqik*il
klnhqyql*milklslklvlklvfnlklvlfklerfkvlimikl*ni*i*rmrngi*lqs
qli*mil*fihm---

---GDTFTLLPNSVKYQVEIIEWDFGATLNSLQVLFESKITATNNNNNCDNDNQDQEISK
NILMNGQSIRTIEMKSINGDILVGTFSNRLKIDERVVVSSIEILSQDSLLSSNISTTQNQ
SVIQAITINYFKTNAIIDPNFGVLLSNDQNTPSPNGCNENTNSSNKFASWKIAVIVVCSV
VGISLIVVSTSIIYRKIRNKSLILEIRLKLSK*ifvtliinx

Frame C:
karccyn*r*filfttnyynw**fmlttytfsw**l**fnl*fpikcwsikfnitsfnhm
*yhskylisiiclykr*smsiikyrclfrsn*w*m**rsktm*m*ywlfwifmfk*srys
s*ttntnyk*y*nch*nwy*nwcsi*nwyysn*rdskf****sckiykfke*emefnykv
n*fr*ycnlyi---

---vtllhcyqiqlniklkllngileqh*ilykfylnqklllpiiiiivimiikikkflk
if**mvnqleqlk*rvlmvif*lehfqiv*klmke*llvqlkfyhkilyyqvifqqhkin
q*fkl*l*tilkqmllsiqilvyfyqmikilhlqmvvmkilihqinlhlgksl*l*fvql
lvfh*l*fqpq*fierleinl*f*k*d*nyqnkfl*h***i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09581-1 (Contig-U09581-1Q)
/CSM_Contig/Contig-U09581-1Q.Seq.d
         (1245 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09581-1 (Contig-U09581-1Q) /CSM_Contig/Conti...  2288  0.0
Contig-U12373-1 (Contig-U12373-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U09165-1 (Contig-U09165-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U13607-1 (Contig-U13607-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14524-1 (Contig-U14524-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12546-1 (Contig-U12546-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12285-1 (Contig-U12285-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09747-1 (Contig-U09747-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U01051-1 (Contig-U01051-1Q) /CSM_Contig/Conti...    32  1.4
Contig-U09222-1 (Contig-U09222-1Q) /CSM_Contig/Conti...    30  5.4

>Contig-U09581-1 (Contig-U09581-1Q) /CSM_Contig/Contig-U09581-1Q.Seq.d
          Length = 1245

 Score = 2288 bits (1154), Expect = 0.0
 Identities = 1184/1184 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaaaagccaggtgttgttacaattaaaggtagttcattttgttcacaaccaactattaca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aaaaagccaggtgttgttacaattaaaggtagttcattttgttcacaaccaactattaca 60

                                                                        
Query: 61   attggtgatgattcatgctcacaacctatactttcagttggtaatgattatgatagttta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   attggtgatgattcatgctcacaacctatactttcagttggtaatgattatgatagttta 120

                                                                        
Query: 121  acttgtaatttccaatcaaatgctggtctatcaaattcaacattactagtttcaatcata 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  acttgtaatttccaatcaaatgctggtctatcaaattcaacattactagtttcaatcata 180

                                                                        
Query: 181  tgtgataccattcaaaatacctcatctcaatcatttgtttatataagagatgatccatgt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tgtgataccattcaaaatacctcatctcaatcatttgtttatataagagatgatccatgt 240

                                                                        
Query: 241  ccatcatcaagtacaggtgtttgttcaggtccaactaatggtaaatgtaatgaagatcaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ccatcatcaagtacaggtgtttgttcaggtccaactaatggtaaatgtaatgaagatcaa 300

                                                                        
Query: 301  agacaatgtgaatgtaatactggttattctggattttcatgttcaaataaagtagatact 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  agacaatgtgaatgtaatactggttattctggattttcatgttcaaataaagtagatact 360

                                                                        
Query: 361  caagttaaaccaccaataccaattataaatgatactaaaactgtcattgaaactggtatt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  caagttaaaccaccaataccaattataaatgatactaaaactgtcattgaaactggtatt 420

                                                                        
Query: 421  gaaactggtgttcaatttgaaattggtattattcaaattagagagattcaaagttttaat 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  gaaactggtgttcaatttgaaattggtattattcaaattagagagattcaaagttttaat 480

                                                                        
Query: 481  aatgataaagttgtaaaatatataaatttaaagaatgagaaatggaatttaattacaaag 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  aatgataaagttgtaaaatatataaatttaaagaatgagaaatggaatttaattacaaag 540

                                                                        
Query: 541  tcaactgatttagatgatattgtaatttatacatatgnnnnnnnnnnaggtgacactttt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  tcaactgatttagatgatattgtaatttatacatatgnnnnnnnnnnaggtgacactttt 600

                                                                        
Query: 601  acattgttaccaaattcagttaaatatcaagttgaaattattgaatgggattttggagca 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  acattgttaccaaattcagttaaatatcaagttgaaattattgaatgggattttggagca 660

                                                                        
Query: 661  acattaaattctttacaagttttatttgaatcaaaaattactgctaccaataataataat 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  acattaaattctttacaagttttatttgaatcaaaaattactgctaccaataataataat 720

                                                                        
Query: 721  aattgtgataatgataatcaagatcaagaaatttctaaaaatattttaatgaatggtcaa 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  aattgtgataatgataatcaagatcaagaaatttctaaaaatattttaatgaatggtcaa 780

                                                                        
Query: 781  tcaattagaacaattgaaatgaagagtattaatggtgatattctagttggaacattttca 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  tcaattagaacaattgaaatgaagagtattaatggtgatattctagttggaacattttca 840

                                                                        
Query: 841  aatcgtttaaaaattgatgaaagagtagttgttagttcaattgaaattttatcacaagat 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  aatcgtttaaaaattgatgaaagagtagttgttagttcaattgaaattttatcacaagat 900

                                                                        
Query: 901  tctttattatcaagtaatatttcaacaacacaaaatcaatcagtaattcaagctataact 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tctttattatcaagtaatatttcaacaacacaaaatcaatcagtaattcaagctataact 960

                                                                        
Query: 961  ataaactattttaaaacaaatgctattatcgatccaaattttggtgtacttttatcaaat 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ataaactattttaaaacaaatgctattatcgatccaaattttggtgtacttttatcaaat 1020

                                                                        
Query: 1021 gatcaaaatactccatctccaaatggttgtaatgaaaatactaattcatcaaataaattt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gatcaaaatactccatctccaaatggttgtaatgaaaatactaattcatcaaataaattt 1080

                                                                        
Query: 1081 gcatcttggaaaatcgctgtaattgtagtttgttcagttgttggtatttcattaattgta 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gcatcttggaaaatcgctgtaattgtagtttgttcagttgttggtatttcattaattgta 1140

                                                        
Query: 1141 gtttcaacctcaataatttatagaaagattagaaataaatcttt 1184
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gtttcaacctcaataatttatagaaagattagaaataaatcttt 1184


>Contig-U12373-1 (Contig-U12373-1Q) /CSM_Contig/Contig-U12373-1Q.Seq.d
          Length = 2450

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 1087 tggaaaatcgctgtaattgtagtttgttcagttgttggt 1125
            ||||||||  ||||||||||||||  |||||||||||||
Sbjct: 2264 tggaaaattcctgtaattgtagttctttcagttgttggt 2302


 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 675  acaagttttatttgaa 690
            ||||||||||||||||
Sbjct: 1240 acaagttttatttgaa 1225


>Contig-U09165-1 (Contig-U09165-1Q) /CSM_Contig/Contig-U09165-1Q.Seq.d
          Length = 1087

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 708 caataataataataattgtgataatgataat 738
           ||||||||||||||||| || ||||||||||
Sbjct: 242 caataataataataattttggtaatgataat 272


 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 709 aataataataataat 723
           |||||||||||||||
Sbjct: 222 aataataataataat 236


 Score = 30.2 bits (15), Expect = 5.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 709 aataataataataat 723
           |||||||||||||||
Sbjct: 225 aataataataataat 239


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,817
Number of Sequences: 6905
Number of extensions: 39817
Number of successful extensions: 12351
Number of sequences better than 10.0: 1667
length of query: 1245
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1229
effective length of database: 5,564,391
effective search space: 6838636539
effective search space used: 6838636539
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09581-1 (Contig-U09581-1Q) /CSM_Contig/Contig-U09581-1Q.Seq.d
         (1245 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ412142) Dictyostelium discoideum cDNA clone:ddv7h06, 5' e...  1142   0.0    1
(BJ430393) Dictyostelium discoideum cDNA clone:ddv7h06, 3' e...  1138   0.0    1
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431...    50   2e-10  5
(AL034557) Plasmodium falciparum MAL4P1.                           42   2e-04  9
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    44   6e-04  7
(BB973574) Plasmodium berghei strain ANKA cDNA clone:OK00335...    46   8e-04  2
(CU062453) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   8e-04  12
(BB973573) Plasmodium berghei strain ANKA cDNA clone:OK00335...    46   8e-04  2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   0.001  5
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.002  9
(AQ904957) GSSTc08143 Trypanosoma cruzi random genomic libra...    52   0.002  2
(AL844509) Plasmodium falciparum chromosome 13.                    44   0.002  8
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    38   0.002  6
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.005  21
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    40   0.010  8
(CG680840) 89M06_27T3 Carica papaya BAC library Carica papay...    54   0.013  1
(EX241359) PY03041X1B11.f1 PY03 Carica papaya cDNA, mRNA seq...    54   0.013  1
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    36   0.016  7
(BJ438431) Dictyostelium discoideum cDNA clone:ddv37l22, 3' ...    36   0.018  3
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    38   0.018  8
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    42   0.029  4
(AC214416) Populus trichocarpa clone POP036-I17, complete se...    48   0.031  6
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    40   0.032  2
(EC820078) SME00007315 esmbsro2 Sawyeria marylandensis cDNA,...    40   0.036  2
(CR450850) Zebrafish DNA sequence from clone CH211-113J3 in ...    52   0.052  1
(CR376769) Zebrafish DNA sequence from clone CH211-120K3 in ...    52   0.052  1
(CR361564) Zebrafish DNA sequence from clone DKEY-87O1 in li...    52   0.052  1
(BX890620) Zebrafish DNA sequence from clone DKEY-48C14 in l...    52   0.052  1
(BX465223) Zebrafish DNA sequence from clone RP71-8E8 in lin...    52   0.052  1
(BX247887) Zebrafish DNA sequence from clone CH211-142L10.         52   0.052  1
(BX000460) Zebrafish DNA sequence from clone CH211-15E22 in ...    52   0.052  1
(AC187854) Populus trichocarpa clone Pop1-11B14, complete se...    52   0.052  1
(Z98551) Plasmodium falciparum MAL3P6.                             52   0.052  1
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    52   0.052  1
(AC141759) Apis mellifera clone CH224-60D17, WORKING DRAFT S...    52   0.052  1
(AC131510) Strongylocentrotus purpuratus clone Sp79A2, *** S...    52   0.052  1
(CT956033) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.052  1
(CT573368) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.052  1
(CT030731) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.052  1
(AC226289) Tachyglossus aculeatus clone TA_Ba-429K21, WORKIN...    52   0.052  1
(AC200967) Strongylocentrotus purpuratus clone R3-1117B13, W...    52   0.052  1
(AC192914) Atelerix albiventris clone LB4-505H1, WORKING DRA...    52   0.052  1
(AC181333) Strongylocentrotus purpuratus clone R3-4019D07, W...    52   0.052  1
(AC170707) Atelerix albiventris clone LB4-208I1, WORKING DRA...    52   0.052  1
(DX511444) 643_4_14167591_5489_43566_066 Arachis duranensis ...    52   0.052  1
(CK247089) EST730726 potato callus cDNA library, normalized ...    52   0.052  1
(AA841011) MB3D6AA2E02T3 Brugia malayi day 6 post-infection ...    52   0.052  1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    36   0.055  6
(AC138285) Mus musculus chromosome 1, clone RP24-383G22, com...    38   0.058  7
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    42   0.065  3
(AC202491) Medicago truncatula clone mth2-188d6, WORKING DRA...    40   0.069  7
(AC177042) Strongylocentrotus purpuratus clone R3-38O10, WOR...    44   0.072  6
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    32   0.073  19
(AC095766) Rattus norvegicus clone CH230-9P5, *** SEQUENCING...    42   0.080  7
(AC114258) Dictyostelium discoideum chromosome 2 map complem...    40   0.082  5
(CU928008) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.083  5
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    36   0.085  23
(AF166114) Mesostigma viride chloroplast DNA, complete genome.     36   0.098  7
(AL844506) Plasmodium falciparum chromosome  7.                    38   0.11   8
(AC115683) Dictyostelium discoideum chromosome 2 map complem...    38   0.11   7
(AC177973) Strongylocentrotus purpuratus clone R3-3050A3, WO...    34   0.15   8
(CU639457) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.16   5
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   0.17   21
(BH164647) ENTSV06TR Entamoeba histolytica Sheared DNA Entam...    34   0.19   3
(BJ441121) Dictyostelium discoideum cDNA clone:ddv45a22, 3' ...    46   0.20   2
(CU856140) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.20   1
(AC184467) Strongylocentrotus purpuratus clone R3-4001G11, W...    50   0.20   1
(AC180897) Strongylocentrotus purpuratus clone R3-3064E11, W...    50   0.20   1
(AC180004) Strongylocentrotus purpuratus clone R3-3036M14, W...    50   0.20   1
(AC179668) Strongylocentrotus purpuratus clone R3-3001M21, *...    50   0.20   1
(AC174487) Strongylocentrotus purpuratus clone R3-3120P7, WO...    50   0.20   1
(AC168812) Strongylocentrotus purpuratus clone R3-13G22, WOR...    50   0.20   1
(EJ089943) 1095460162777 Global-Ocean-Sampling_GS-26-01-01-1...    50   0.20   1
(AU087810) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    50   0.20   1
(FG359547) RM_G_02223 Eriocheir sinensis hepatopancreas cDNA...    50   0.20   1
(FE082002) LV_GL_RA21O21f Litopenaeus vannamei gills cDNA li...    50   0.20   1
(EY332306) CAWY4775.rev CAWY Helobdella robusta Subtracted E...    50   0.20   1
(EY315017) CAWX25826.fwd CAWX Helobdella robusta Primary Ear...    50   0.20   1
(AM469084) Vitis vinifera, whole genome shotgun sequence, co...    44   0.21   4
(CT693859) Danio rerio EST, clone ZF_mu_155o24 3'.                 46   0.21   2
(AC208049) Populus trichocarpa clone JGIACSB05-L15, complete...    44   0.23   4
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    32   0.23   9
(AL928808) Zebrafish DNA sequence from clone DKEY-265H18 in ...    40   0.23   8
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   0.24   4
(CP000382) Clostridium novyi NT, complete genome.                  34   0.28   20
(CB284083) DF0784 Dermatophagoides farinae cDNA library Derm...    30   0.30   4
(AE015927) Clostridium tetani E88, complete genome.                34   0.31   21
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    42   0.31   3
(AC158771) Mus musculus chromosome 15, clone RP23-450E19, co...    42   0.31   9
(AC176016) Strongylocentrotus purpuratus clone R3-17O17, WOR...    36   0.32   7
(AC178482) Strongylocentrotus purpuratus clone R3-3033I17, W...    36   0.33   6
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   0.34   22
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    36   0.36   21
(AM443212) Vitis vinifera contig VV78X079008.5, whole genome...    32   0.37   6
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    34   0.38   7
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   0.42   17
(AC214024) Macaca mulatta clone CH250-483F14, WORKING DRAFT ...    34   0.44   2
(AC180505) Strongylocentrotus purpuratus clone R3-3099M09, W...    38   0.45   2
(AC176799) Strongylocentrotus purpuratus clone R3-3109A21, W...    36   0.46   2
(CU462913) Zebrafish DNA sequence from clone CH73-208H1 in l...    36   0.46   2

>(BJ412142) Dictyostelium discoideum cDNA clone:ddv7h06, 5' end,
           single read.
          Length = 578

 Score = 1142 bits (576), Expect = 0.0
 Identities = 576/576 (100%)
 Strand = Plus / Plus


Query: 1   aaaaagccaggtgttgttacaattaaaggtagttcattttgttcacaaccaactattaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaagccaggtgttgttacaattaaaggtagttcattttgttcacaaccaactattaca 60


Query: 61  attggtgatgattcatgctcacaacctatactttcagttggtaatgattatgatagttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attggtgatgattcatgctcacaacctatactttcagttggtaatgattatgatagttta 120


Query: 121 acttgtaatttccaatcaaatgctggtctatcaaattcaacattactagtttcaatcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acttgtaatttccaatcaaatgctggtctatcaaattcaacattactagtttcaatcata 180


Query: 181 tgtgataccattcaaaatacctcatctcaatcatttgtttatataagagatgatccatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtgataccattcaaaatacctcatctcaatcatttgtttatataagagatgatccatgt 240


Query: 241 ccatcatcaagtacaggtgtttgttcaggtccaactaatggtaaatgtaatgaagatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccatcatcaagtacaggtgtttgttcaggtccaactaatggtaaatgtaatgaagatcaa 300


Query: 301 agacaatgtgaatgtaatactggttattctggattttcatgttcaaataaagtagatact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agacaatgtgaatgtaatactggttattctggattttcatgttcaaataaagtagatact 360


Query: 361 caagttaaaccaccaataccaattataaatgatactaaaactgtcattgaaactggtatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caagttaaaccaccaataccaattataaatgatactaaaactgtcattgaaactggtatt 420


Query: 421 gaaactggtgttcaatttgaaattggtattattcaaattagagagattcaaagttttaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaactggtgttcaatttgaaattggtattattcaaattagagagattcaaagttttaat 480


Query: 481 aatgataaagttgtaaaatatataaatttaaagaatgagaaatggaatttaattacaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatgataaagttgtaaaatatataaatttaaagaatgagaaatggaatttaattacaaag 540


Query: 541 tcaactgatttagatgatattgtaatttatacatat 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaactgatttagatgatattgtaatttatacatat 576

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,588,907,362
Number of extensions: 104773042
Number of successful extensions: 12416272
Number of sequences better than 10.0: 756
Length of query: 1245
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1221
Effective length of database: 97,308,875,965
Effective search space: 118814137553265
Effective search space used: 118814137553265
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09581-1 (Contig-U09581-1Q) /CSM_Contig/Contig-U09581-1Q.Seq.d
         (1245 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115605_7(AC115605|pid:none) Dictyostelium discoideum chromosom...   243   1e-62
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   108   3e-22
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    89   2e-16
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    88   7e-16
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...    87   1e-15
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    87   1e-15
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    86   3e-15
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    85   5e-15
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso...    85   5e-15
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...    84   1e-14
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    82   3e-14
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    82   5e-14
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...    81   7e-14
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso...    81   7e-14
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    80   1e-13
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso...    80   2e-13
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    79   3e-13
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    78   7e-13
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    77   1e-12
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...    76   2e-12
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...    76   3e-12
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso...    71   7e-11
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso...    70   1e-10
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso...    68   8e-10
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...    64   1e-08
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    62   3e-08
AC117075_42(AC117075|pid:none) Dictyostelium discoideum chromoso...    57   1e-06
AC117075_65(AC117075|pid:none) Dictyostelium discoideum chromoso...    55   4e-06
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    54   9e-06
AC117075_80(AC117075|pid:none) Dictyostelium discoideum chromoso...    47   0.001
AF060203_1(AF060203|pid:none) Biomphalaria glabrata beta integri...    42   0.035
DQ289584_1(DQ289584|pid:none) Spodoptera frugiperda integrin bet...    41   0.077
AX817295_1(AX817295|pid:none) Sequence 43 from Patent WO02081517.      40   0.17
AX817297_1(AX817297|pid:none) Sequence 45 from Patent WO02081517.      40   0.17
AM904781_1(AM904781|pid:none) Ministeria vibrans partial mRNA fo...    40   0.23
AC117080_18(AC117080|pid:none) Dictyostelium discoideum chromoso...    40   0.23
AY964763_1(AY964763|pid:none) Eptatretus burgeri clone Eb7VLRA.5...    39   0.29
AK148084_1(AK148084|pid:none) Mus musculus B16 F10Y cells cDNA, ...    39   0.50
BC154145_1(BC154145|pid:none) Danio rerio si:dkey-207j16.6, mRNA...    38   0.66
(Q96KG7) RecName: Full=Multiple epidermal growth factor-like dom...    38   0.66
CR749437_1(CR749437|pid:none) Homo sapiens mRNA; cDNA DKFZp781K1...    38   0.66
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso...    38   0.86
CR383662_1(CR383662|pid:none) Zebrafish DNA sequence from clone ...    38   0.86
(Q54HD2) RecName: Full=Probable serine/threonine-protein kinase ...    37   1.1
CP000595_187(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...    37   1.1
AK074632_1(AK074632|pid:none) Homo sapiens cDNA FLJ90151 fis, cl...    37   1.9
AF228824_1(AF228824|pid:none) Strongylocentrotus purpuratus clon...    37   1.9
DQ900937_1(DQ900937|pid:none) Ciona intestinalis gamma-carboxygl...    37   1.9
CR940347_446(CR940347|pid:none) Theileria annulata strain Ankara...    36   2.5
AF463419_1(AF463419|pid:none) Naegleria gruberi basal body prote...    36   2.5
CR388098_1(CR388098|pid:none) Zebrafish DNA sequence from clone ...    36   2.5
BX890618_1(BX890618|pid:none) Zebrafish DNA sequence from clone ...    36   2.5
BX088690_1(BX088690|pid:none) Zebrafish DNA sequence from clone ...    36   2.5
BC146386_1(BC146386|pid:none) Synthetic construct Homo sapiens c...    36   3.3
(O75095) RecName: Full=Multiple epidermal growth factor-like dom...    36   3.3
AJ275213_1(AJ275213|pid:none) Homo sapiens mRNA for stabilin-1 (...    36   3.3
CU928174_21(CU928174|pid:none) Zygosaccharomyces rouxii strain C...    36   3.3
AB052956_1(AB052956|pid:none) Homo sapiens mRNA for FELE-1, comp...    36   3.3
AB011539_1(AB011539|pid:none) Homo sapiens mRNA for MEGF6 protei...    36   3.3
AF005356_1(AF005356|pid:none) Acropora millepora integrin subuni...    36   3.3
DQ786774_1(DQ786774|pid:none) Homo sapiens FEX1 mRNA, complete c...    36   3.3
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...    35   4.3
AE014296_356(AE014296|pid:none) Drosophila melanogaster chromoso...    35   4.3
U13646_1(U13646|pid:none) Caenorhabditis elegans cosmid ZK783, c...    35   4.3
BT070410_1(BT070410|pid:none) Picea sitchensis clone WS02727_L02...    35   4.3
(Q6V0I7) RecName: Full=Protocadherin Fat 4;          Short=hFat4...    35   4.3
(Q8R4Y4) RecName: Full=Stabilin-1; AltName: Full=Fasciclin, EGF-...    35   4.3
T34513(T34513)hypothetical protein ZK783.1 - Caenorhabditis eleg...    35   4.3
AB189739_1(AB189739|pid:none) Dugesia japonica mRNA for H+/K+-AT...    35   4.3
(O00548) RecName: Full=Delta-like protein 1; AltName: Full=Droso...    35   5.6
AC131455_8(AC131455|pid:none) Medicago truncatula clone mth1-42h...    35   5.6
(Q6DI48) RecName: Full=Delta-like protein A;          Short=Delt...    35   5.6
AF196571_1(AF196571|pid:none) Homo sapiens Delta-like-1 protein ...    35   5.6
CP000595_188(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...    35   5.6
AF003522_1(AF003522|pid:none) Homo sapiens Delta mRNA, complete ...    35   5.6
(P41951) RecName: Full=Prion-like-(Q/N-rich) domain-bearing prot...    35   5.6
CU458989_1(CU458989|pid:none) Danio rerio cDNA, clone cssl:d0399.      35   5.6
AM904782_1(AM904782|pid:none) Ministeria vibrans partial mRNA fo...    35   5.6
T16199(T16199) hypothetical protein F28B4.3 - Caenorhabditis ele...    35   5.6
(Q8IYR6) RecName: Full=Tomoregulin-1; AltName: Full=Transmembran...    35   5.6
AB266841_1(AB266841|pid:none) Equus caballus itgb1 mRNA for beta...    35   7.3
(B0FYY4) RecName: Full=Integrin beta-1; AltName: Full=Integrin s...    35   7.3
AL157430_1(AL157430|pid:none) Homo sapiens mRNA; cDNA DKFZp564L1...    35   7.3
(Q14622) RecName: Full=Integrin beta-1; AltName: Full=Fibronecti...    35   7.3
AK222691_1(AK222691|pid:none) Homo sapiens mRNA for transmembran...    35   7.3
AM231718_1(AM231718|pid:none) Gallus gallus mRNA for tenascin-W ...    35   7.3
FJ593486_1(FJ593486|pid:none) Danio rerio neuregulin 1 type IIa ...    35   7.3
AY734484_1(AY734484|pid:none) Hirudo medicinalis Na,K ATPase alp...    35   7.3
AL445565_247(AL445565|pid:none) Mycoplasma pulmonis (strain UAB ...    35   7.3
BC114107_1(BC114107|pid:none) Bos taurus integrin beta 1, mRNA (...    35   7.3
AK074507_1(AK074507|pid:none) Homo sapiens cDNA FLJ90026 fis, cl...    35   7.3
AB004064_1(AB004064|pid:none) Homo sapiens mRNA for tomoregulin,...    35   7.3
AK043792_1(AK043792|pid:none) Mus musculus 10 days neonate corte...    35   7.3
(Q17QD6) RecName: Full=Tomoregulin-2; AltName: Full=Transmembran...    35   7.3
I50719(I50719) C-Delta-1 - chicken  &U26590_1(U26590|pid:none)         35   7.3
(Q9P2Y9) RecName: Full=Tomoregulin-2; AltName: Full=Transmembran...    35   7.3
AC116305_70(AC116305|pid:none) Dictyostelium discoideum chromoso...    35   7.3
AC098617_1(AC098617|pid:none) Homo sapiens BAC clone RP11-56I1 f...    35   7.3
AJ400622_1(AJ400622|pid:none) Mus musculus partial mRNA for tomo...    35   7.3
AB066348_1(AB066348|pid:none) Crassostrea gigas IBCGH mRNA for i...    35   7.3
(Q9GLP0) RecName: Full=Integrin beta-1; AltName: Full=Fibronecti...    35   7.3
B27079(B27079) fibronectin receptor beta chain precursor - human...    35   7.3
CP001327_224(CP001327|pid:none) Micromonas sp. RCC299 chromosome...    35   7.3
AL772151_3(AL772151|pid:none) Mouse DNA sequence from clone RP23...    35   7.3
(Q9QYM9) RecName: Full=Tomoregulin-2; AltName: Full=Transmembran...    35   7.3
AL807771_3(AL807771|pid:none) Mouse DNA sequence from clone RP23...    35   7.3
BX537407_1(BX537407|pid:none) Homo sapiens mRNA; cDNA DKFZp686D0...    35   7.3
FN316987_1(FN316987|pid:none) Schistosoma japonicum isolate Anhu...    34   9.4
AF308652_1(AF308652|pid:none) Podocoryne carnea integrin beta ch...    34   9.5
BC098806_1(BC098806|pid:none) Rattus norvegicus integrin, beta 7...    34   9.5
AB052948_1(AB052948|pid:none) Homo sapiens mRNA for SREC-3, comp...    34   9.5
AK291810_1(AK291810|pid:none) Homo sapiens cDNA FLJ78719 complet...    34   9.5
CR954216_232(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    34   9.5
A31643(S22066;A31643;A26310;A23951;A33463;S01473) cell adhesion ...    34   9.5
(Q9QYP2) RecName: Full=Cadherin EGF LAG seven-pass G-type recept...    34   9.5
FN392319_280(FN392319|pid:none) Pichia pastoris GS115 chromosome...    34   9.5
T21064(T21064;T22550)hypothetical protein F53B7.5 - Caenorhabdit...    34   9.5
AY805407_1(AY805407|pid:none) Danio rerio notch1b mRNA, complete...    34   9.5
(P10079) RecName: Full=Fibropellin-1; AltName: Full=Fibropellin-...    34   9.5
M17421_1(M17421|pid:none) Strongylocentrotus purpuratus putative...    34   9.5
L08692_2(L08692|pid:none) Strongylocentrotus purpuratus fibropel...    34   9.5
AY387782_1(AY387782|pid:none) Pneumocystis carinii clone inocc1t...    34   9.5
AE014296_355(AE014296|pid:none) Drosophila melanogaster chromoso...    34   9.5
AF132883_1(AF132883|pid:none) Caenorhabditis elegans UNC-52/Perl...    34   9.5
A35844(A35844)Xotch protein - African clawed frog                      34   9.5
(P21783) RecName: Full=Neurogenic locus notch protein homolog;  ...    34   9.5
BC121568_1(BC121568|pid:none) Xenopus tropicalis netrin 1, mRNA ...    34   9.5
AF145617_1(AF145617|pid:none) Drosophila melanogaster clone GH03...    34   9.5
BC155916_1(BC155916|pid:none) Xenopus laevis hypothetical protei...    34   9.5
Z72507_20(Z72507|pid:none) Caenorhabditis elegans Cosmid F17C11,...    34   9.5

>AC115605_7(AC115605|pid:none) Dictyostelium discoideum chromosome 2
            map 5817431-5836155 strain AX4, complete sequence.
          Length = 841

 Score =  243 bits (619), Expect = 1e-62
 Identities = 168/462 (36%), Positives = 249/462 (53%), Gaps = 59/462 (12%)
 Frame = +1

Query: 7    PGVVTIKGSSFCSQPTITIGDDSCSQPILSVGNDYDSLTCNFQSNAGLSNSTLLVSIICD 186
            P  VTI GSSFC  P +TIG   C   +    ND   + C F+S+     +T  +++ CD
Sbjct: 391  PSEVTIYGSSFCMYPNVTIGGSICKLRLSDYEND--RIYCWFESDVQGLTTTHTINVTCD 448

Query: 187  TIQ-NTSSQSFVYIRDDPCPS-SSTG-VCSGPTNGKCNEDQRQCECNTGYSGFSCSNKVD 357
              Q   S   F+Y  D+   S + TG +CSG  NG C++  R+C CN  Y G  CS + +
Sbjct: 449  DNQVYGSGDVFLYATDECLISMNKTGLICSG--NGICDDSIRKCICNDNYFGLDCSIENN 506

Query: 358  TQVKPPIPIINDTKTVIETGIETGVQFEIGIIQIREIQSFNNDKVVKYINLKNEK----- 522
              + PPI  I++T ++I+       +FEIG++QIREI+ F ++KV+K  NL N
Sbjct: 507  GTIIPPI--IDNTTSIIDFN---NTKFEIGLVQIREIE-FIDEKVIKTFNLTNGNGNGNG 560

Query: 523  -------WNL----------ITKSTDLDDIVIYTYXXXXGDT------------FTLLPN 615
                   WNL          I  +T ++  +I  Y     DT             T+LPN
Sbjct: 561  SGNGGVIWNLEDVNQMKTNYIFNTTLINKSIIKVYLTINSDTKLSKQYNFYGDLITILPN 620

Query: 616  SVKYQVEIIEWDFGATLNSLQVLFESKITATXXXXXXXXXXXXXEISKNILMNGQSIRTI 795
            SVKY++EI  W+F ++LNS++++F+SKI+                 +K I M G SIR++
Sbjct: 621  SVKYKIEITNWEFDSSLNSIELIFQSKISVDQCNDSVSLIG-----NKTIQMYGDSIRSM 675

Query: 796  EMKSINGDILVGTFSNRLKIDERVVVSSIEILSQDSLL---------SSNISTTQN---- 936
            E+   NG IL+GTFSNR+K+D+RVV SSI+IL +   +         +S  +TT N
Sbjct: 676  ELTLTNGQILIGTFSNRMKLDDRVVKSSIKILDEQQSIGIPTIITNTNSTPTTTNNNNNN 735

Query: 937  -----QSVIQAITINYFKTNAIIDPNFGVLLSNDQNTPSPNGCNE----NTNSSNKFASW 1089
                 Q+V   ++INYFK  AI+DPNFGVL+ ND +    +  +E       +  KFA+W
Sbjct: 736  IKTSTQNVFTVVSINYFKDIAIVDPNFGVLIDNDLSGGGDDILDECGRVIGKTKEKFANW 795

Query: 1090 KIAVIVVCSVVGISLIVVSTSIIYRKIRNKSLILEIRLKLSK 1215
            KIA+IVV S VGISLIVV+  +   + R+  ++  ++LK++K
Sbjct: 796  KIALIVVFSFVGISLIVVAVIVYKTRGRHSIVVNGVKLKMNK 837

Lambda     K      H
   0.317    0.133    0.380

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,485,304,565
Number of extensions: 24801481
Number of successful extensions: 77590
Number of sequences better than 10.0: 130
Number of HSP's gapped: 77144
Number of HSP's successfully gapped: 155
Length of query: 415
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 284
Effective length of database: 621,205,444
Effective search space: 176422346096
Effective search space used: 176422346096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.83  gvh: 0.45  alm: 0.11  top: 0.80  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U09581-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0