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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09577-1
Contig ID Contig-U09577-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09577-1 (Contig-U09577-1Q) /CSM_Contig/Contig-U09577-1Q.Seq.d
ACTGTTGGCCTACTGGATATATATACTGTATTTTTATTTTTGTATTATTA
CTATTATTTTTTAAAAAAAAAAATGGAACCAAATATTAAAAATGGTGATG
ATGGTAAATTAAATATTGCAATTATTGGTGGNGGTATTTCAGGTATGTCA
TGTGCATATCTTTTAACTATGGGTGGACATAATTGTACAGTTTTTGAAAA
AGGAAATTATTTAGGAGGTCATACAAACACTGTTCAAGTTAAATTTCAAG
AAGAGACAGTAAAGATTGATACAGGATTTCTAGTGTATACACCACAAAAG
TATCCAAATTTAATGACCCTNTTTAAGAGATTAGGTATTAAAAATGGTGA
ATCCGATATGTCATTTGGCTATTCATTGAATGCTAGACAAGGTATTGAAA
AAACTGTAGAGATGGAAGTTGTTGCCAATGAAATCACCACAAATCCAATT
AAAGCTCCAATTAGAAGAGAGATTGAATGGTGTTCAGATAATTTATCAAC
GATTTTCGCACAATGGCAAAACTTATTCAGACCATCATTTTGGAGATTAT
TAATTGATCTTTACAGATTCTCAAA----------AGTTTCAAAAGTTGT
TAGATCAAAGAATACTCAAGATGGTGTTTTCATTACAACAACCAACTACA
ACTACCAATGGTACTACTACTGATACTGCTACTACAAAATACTCAACATT
TTGATAGAGTTGTATTTGCTTGTCATACACCAGACATTTTCCCAATGTTA
ACTGATATGACATATCCAGAGAGAAAAGTATTGAGTGGATTTAAATTCAC
TCATTGTCTTGCATATCTTCATAGTGATCCATTGTTAATGCCACGTCGTA
GAAGTACATGGTCAAGTTGGAATTATATTTATGATGATAGTTCATTGACA
GAGAATAAATTATGTTGTACCTATTGGTTAAATCGTATTCAACCATGGGT
GAATGCAGAAAAGTATCCACTTTATTTAACTTTAAATCCAGTATTTCAAC
CAAACCCATCACTATTACATCGTGTCATTGAATATGATCATCCTTTGATT
TGTCCCGAGAGTGATAAAGCCAAATCTCGTTTACCAACAATTCAAGGTAT
TAGAAATTCATTTTATTGTGGTGCTTGGACTGGTTATGGTTTCCATGAAG
ATGGTATCACCTCTGGTTTATTGGCTGCTCAATTAATTGATCCAAGTTTA
AATAAACTTTGGAAAGTTGATGTCACTCGTTATATCGATGAATTCCCTTC
AAATCCTGATAAAACAACTTTAACAATCTTTAAAAATATTTTATATTTTT
CAACTTTATTAACTTTAATTTATTATTCAAAACCAATTTTAAATAAATTT
AAATAAAAAAAATTTCTTTTTTTTCCAA
Gap gap included
Contig length 1368
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 377241
End point 378603
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 12
Link to clone list U09577
List of clone(s) 

est1=VFH516F,1,480
est2=VFH881F,1,462
est3=VFI341F,17,575
est4=VFD115F,19,576
est5=VFJ686F,23,578
est6=VFI221Z,579,1362
est7=VFG686Z,585,1378
est8=VFH516Z,620,1374
est9=VFI341Z,625,1359
est10=VFD115Z,640,1378
est11=VFH881Z,734,1373
est12=VFJ686Z,752,1348
Translated Amino Acid sequence 
TVGLLDIYTVFLFLYYYYYFLKKKMEPNIKNGDDGKLNIAIIGGGISGMSCAYLLTMGGH
NCTVFEKGNYLGGHTNTVQVKFQEETVKIDTGFLVYTPQKYPNLMTLFKRLGIKNGESDM
SFGYSLNARQGIEKTVEMEVVANEITTNPIKAPIRREIEWCSDNLSTIFAQWQNLFRPSF
WRLLIDLYRFS---

---FQKLLDQRILKMVFSLQQPTTTTNGTTTDTATTKYSTF**sciclsytrhfpnvn*y
disreksiewi*ihslsciss**sivnats*kymvklelyl***fidre*imlyllvksy
stmgecrkvstlfnfkssistkpititsch*i*ssfdlsre**sqisftnnsry*kfill
wcldwlwfp*rwyhlwfigcsin*skfk*tles*chslyr*ipfks**nnfnnl*kyfif
fnfinfnllfktnfk*i*ikkisffs
Translated Amino Acid sequence (All Frames) 
Frame A:
TVGLLDIYTVFLFLYYYYYFLKKKMEPNIKNGDDGKLNIAIIGGGISGMSCAYLLTMGGH
NCTVFEKGNYLGGHTNTVQVKFQEETVKIDTGFLVYTPQKYPNLMTLFKRLGIKNGESDM
SFGYSLNARQGIEKTVEMEVVANEITTNPIKAPIRREIEWCSDNLSTIFAQWQNLFRPSF
WRLLIDLYRFS---

---sfksc*ikeysrwcfhynnqlqlpmvlllilllqntqhfdrvvfachtpdifpmltd
mtyperkvlsgfkfthclaylhsdpllmprrrstwsswnyiyddssltenklcctywlnr
iqpwvnaekyplyltlnpvfqpnpsllhrvieydhplicpesdkaksrlptiqgirnsfy
cgawtgygfhedgitsgllaaqlidpslnklwkvdvtryidefpsnpdkttltifknily
fstlltliyyskpilnkfk*kkflffp

Frame B:
llaywiyilyfyfciitiif*kkkwnqilkmvmmvn*ilqllvxvfqvchvhif*lwvdi
ivqflkkeii*eviqtlfklnfkkrq*rliqdf*cihhksiqi**pxlrd*vlkmvnpic
hlaih*mldkvlkkl*rwkllpmkspqiqlklqleerlngvqiiyqrfshngktysdhhf
gdy*liftdsq---

---vskvvrskntqdgvfitttnynyqwyyy*ycyykilnilielyllvihqtfsqc*li
*hiqreky*vdlnslivlhifivihc*chvvevhgqvgiifmmivh*qrinyvvpig*iv
fnhg*mqksihfi*l*iqyfnqthhyyivslnmiil*fvprvikpnlvyqqfkvleihfi
vvlglvmvsmkmvsplvywlln*liqv*infgklmslvismnslqilikql*qslkifyi
fqly*l*fiiqnqf*inlnkknffffq

Frame C:
cwptgyiycififvllllffkkkngtky*kw**w*ikycnywwxyfryvmcisfnygwt*
lysf*krklfrrsykhcss*isrrdskd*yrissvyttkvskfndpx*eiry*kw*iryv
iwlfiec*try*kncrdgsccq*nhhksn*ssn*krd*mvfr*findfrtmakliqtiil
eiin*slqilk---

---FQKLLDQRILKMVFSLQQPTTTTNGTTTDTATTKYSTF**sciclsytrhfpnvn*y
disreksiewi*ihslsciss**sivnats*kymvklelyl***fidre*imlyllvksy
stmgecrkvstlfnfkssistkpititsch*i*ssfdlsre**sqisftnnsry*kfill
wcldwlwfp*rwyhlwfigcsin*skfk*tles*chslyr*ipfks**nnfnnl*kyfif
fnfinfnllfktnfk*i*ikkisffs
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09577-1 (Contig-U09577-1Q)
/CSM_Contig/Contig-U09577-1Q.Seq.d
         (1378 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09577-1 (Contig-U09577-1Q) /CSM_Contig/Conti...  2337  0.0
Contig-U10400-1 (Contig-U10400-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U04548-1 (Contig-U04548-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti...    36  0.098
Contig-U05245-1 (Contig-U05245-1Q) /CSM_Contig/Conti...    36  0.098
Contig-U02303-1 (Contig-U02303-1Q) /CSM_Contig/Conti...    36  0.098
Contig-U01809-1 (Contig-U01809-1Q) /CSM_Contig/Conti...    36  0.098
Contig-U14044-1 (Contig-U14044-1Q) /CSM_Contig/Conti...    34  0.39
Contig-U13872-1 (Contig-U13872-1Q) /CSM_Contig/Conti...    34  0.39
Contig-U12916-1 (Contig-U12916-1Q) /CSM_Contig/Conti...    34  0.39

>Contig-U09577-1 (Contig-U09577-1Q) /CSM_Contig/Contig-U09577-1Q.Seq.d
          Length = 1378

 Score = 2337 bits (1179), Expect = 0.0
 Identities = 1215/1215 (100%)
 Strand = Plus / Plus

                                                                        
Query: 74   tggaaccaaatattaaaaatggtgatgatggtaaattaaatattgcaattattggtggng 133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74   tggaaccaaatattaaaaatggtgatgatggtaaattaaatattgcaattattggtggng 133

                                                                        
Query: 134  gtatttcaggtatgtcatgtgcatatcttttaactatgggtggacataattgtacagttt 193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134  gtatttcaggtatgtcatgtgcatatcttttaactatgggtggacataattgtacagttt 193

                                                                        
Query: 194  ttgaaaaaggaaattatttaggaggtcatacaaacactgttcaagttaaatttcaagaag 253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194  ttgaaaaaggaaattatttaggaggtcatacaaacactgttcaagttaaatttcaagaag 253

                                                                        
Query: 254  agacagtaaagattgatacaggatttctagtgtatacaccacaaaagtatccaaatttaa 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254  agacagtaaagattgatacaggatttctagtgtatacaccacaaaagtatccaaatttaa 313

                                                                        
Query: 314  tgaccctntttaagagattaggtattaaaaatggtgaatccgatatgtcatttggctatt 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314  tgaccctntttaagagattaggtattaaaaatggtgaatccgatatgtcatttggctatt 373

                                                                        
Query: 374  cattgaatgctagacaaggtattgaaaaaactgtagagatggaagttgttgccaatgaaa 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374  cattgaatgctagacaaggtattgaaaaaactgtagagatggaagttgttgccaatgaaa 433

                                                                        
Query: 434  tcaccacaaatccaattaaagctccaattagaagagagattgaatggtgttcagataatt 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434  tcaccacaaatccaattaaagctccaattagaagagagattgaatggtgttcagataatt 493

                                                                        
Query: 494  tatcaacgattttcgcacaatggcaaaacttattcagaccatcattttggagattattaa 553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494  tatcaacgattttcgcacaatggcaaaacttattcagaccatcattttggagattattaa 553

                                                                        
Query: 554  ttgatctttacagattctcaaannnnnnnnnnagtttcaaaagttgttagatcaaagaat 613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554  ttgatctttacagattctcaaannnnnnnnnnagtttcaaaagttgttagatcaaagaat 613

                                                                        
Query: 614  actcaagatggtgttttcattacaacaaccaactacaactaccaatggtactactactga 673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614  actcaagatggtgttttcattacaacaaccaactacaactaccaatggtactactactga 673

                                                                        
Query: 674  tactgctactacaaaatactcaacattttgatagagttgtatttgcttgtcatacaccag 733
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  tactgctactacaaaatactcaacattttgatagagttgtatttgcttgtcatacaccag 733

                                                                        
Query: 734  acattttcccaatgttaactgatatgacatatccagagagaaaagtattgagtggattta 793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  acattttcccaatgttaactgatatgacatatccagagagaaaagtattgagtggattta 793

                                                                        
Query: 794  aattcactcattgtcttgcatatcttcatagtgatccattgttaatgccacgtcgtagaa 853
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  aattcactcattgtcttgcatatcttcatagtgatccattgttaatgccacgtcgtagaa 853

                                                                        
Query: 854  gtacatggtcaagttggaattatatttatgatgatagttcattgacagagaataaattat 913
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  gtacatggtcaagttggaattatatttatgatgatagttcattgacagagaataaattat 913

                                                                        
Query: 914  gttgtacctattggttaaatcgtattcaaccatgggtgaatgcagaaaagtatccacttt 973
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  gttgtacctattggttaaatcgtattcaaccatgggtgaatgcagaaaagtatccacttt 973

                                                                        
Query: 974  atttaactttaaatccagtatttcaaccaaacccatcactattacatcgtgtcattgaat 1033
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  atttaactttaaatccagtatttcaaccaaacccatcactattacatcgtgtcattgaat 1033

                                                                        
Query: 1034 atgatcatcctttgatttgtcccgagagtgataaagccaaatctcgtttaccaacaattc 1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 atgatcatcctttgatttgtcccgagagtgataaagccaaatctcgtttaccaacaattc 1093

                                                                        
Query: 1094 aaggtattagaaattcattttattgtggtgcttggactggttatggtttccatgaagatg 1153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 aaggtattagaaattcattttattgtggtgcttggactggttatggtttccatgaagatg 1153

                                                                        
Query: 1154 gtatcacctctggtttattggctgctcaattaattgatccaagtttaaataaactttgga 1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 gtatcacctctggtttattggctgctcaattaattgatccaagtttaaataaactttgga 1213

                                                                        
Query: 1214 aagttgatgtcactcgttatatcgatgaattcccttcaaatcctgataaaacaactttaa 1273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 aagttgatgtcactcgttatatcgatgaattcccttcaaatcctgataaaacaactttaa 1273

                           
Query: 1274 caatctttaaaaata 1288
            |||||||||||||||
Sbjct: 1274 caatctttaaaaata 1288


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  actgttggcctactgg 16
          ||||||||||||||||
Sbjct: 1  actgttggcctactgg 16


>Contig-U10400-1 (Contig-U10400-1Q) /CSM_Contig/Contig-U10400-1Q.Seq.d
          Length = 806

 Score = 38.2 bits (19), Expect = 0.025
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1193 caagtttaaataaactttggaaa 1215
            ||||||||||||| |||||||||
Sbjct: 22   caagtttaaataatctttggaaa 44


>Contig-U04548-1 (Contig-U04548-1Q) /CSM_Contig/Contig-U04548-1Q.Seq.d
          Length = 616

 Score = 38.2 bits (19), Expect = 0.025
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1196 gtttaaataaactttggaaagtt 1218
            ||||||||||| |||||||||||
Sbjct: 249  gtttaaataaattttggaaagtt 271


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,495
Number of Sequences: 6905
Number of extensions: 15495
Number of successful extensions: 2110
Number of sequences better than 10.0: 554
length of query: 1378
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1362
effective length of database: 5,564,391
effective search space: 7578700542
effective search space used: 7578700542
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09577-1 (Contig-U09577-1Q) /CSM_Contig/Contig-U09577-1Q.Seq.d
         (1378 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434207) Dictyostelium discoideum cDNA clone:ddv16o03, 3' ...  1112   0.0    1
(BJ431985) Dictyostelium discoideum cDNA clone:ddv17b11, 3' ...  1112   0.0    1
(BJ431624) Dictyostelium discoideum cDNA clone:ddv14k22, 3' ...  1112   0.0    1
(BJ431943) Dictyostelium discoideum cDNA clone:ddv17i06, 3' ...  1106   0.0    1
(BJ430411) Dictyostelium discoideum cDNA clone:ddv7m03, 3' e...  1104   0.0    1
(BJ434398) Dictyostelium discoideum cDNA clone:ddv16b22, 3' ...  1041   0.0    1
(BJ433137) Dictyostelium discoideum cDNA clone:ddv20k22, 3' ...   987   0.0    1
(BJ412158) Dictyostelium discoideum cDNA clone:ddv7m03, 5' e...   965   0.0    1
(BJ413873) Dictyostelium discoideum cDNA clone:ddv17b11, 5' ...   954   0.0    1
(BJ414933) Dictyostelium discoideum cDNA clone:ddv20k22, 5' ...   924   0.0    1
(BJ413557) Dictyostelium discoideum cDNA clone:ddv16o03, 5' ...   783   0.0    2
(BJ413723) Dictyostelium discoideum cDNA clone:ddv16b22, 5' ...   357   0.0    3
(EJ412581) 1093012160601 Global-Ocean-Sampling_GS-28-01-01-1...    36   4e-04  3
(ER535849) 1093015840528 Global-Ocean-Sampling_GS-35-01-01-1...    36   0.048  3
(EJ744327) 1092962041264 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.050  3
(EJ229406) 1092402559288 Global-Ocean-Sampling_GS-27-01-01-1...    36   0.053  3
(EK421363) 1095515508392 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.057  1
(EJ226433) 1092399600936 Global-Ocean-Sampling_GS-27-01-01-1...    52   0.057  1
(EJ748923) 1092963021931 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.057  3
(ER485734) 1093015297007 Global-Ocean-Sampling_GS-35-01-01-1...    36   0.067  3
(EJ285429) 1095368018905 Global-Ocean-Sampling_GS-27-01-01-1...    36   0.075  3
(EK403032) 1095469551113 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.087  2
(CR759736) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.18   3
(EJ251140) 1095344033059 Global-Ocean-Sampling_GS-27-01-01-1...    32   0.22   3
(AC113139) Homo sapiens chromosome 8, clone CTD-3214K23, com...    50   0.23   1
(AC225875) Neofelis nebulosa clone CH87-184A11, WORKING DRAF...    50   0.23   1
(AC018960) Homo sapiens chromosome 8 clone RP11-283I17 map 8...    50   0.23   1
(ER611354) 1093016312127 Global-Ocean-Sampling_GS-36-01-01-2...    50   0.23   1
(EK385092) 1095469479889 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.23   1
(EJ128258) 1092343404164 Global-Ocean-Sampling_GS-27-01-01-1...    50   0.23   1
(EK227186) 1095460162580 Global-Ocean-Sampling_GS-31-01-01-1...    32   0.23   3
(EK109084) 1092963083283 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.28   3
(EK119033) 1092963316910 Global-Ocean-Sampling_GS-31-01-01-1...    32   0.75   3
(ER544613) 1093016141104 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.89   1
(ER294422) 1092343637387 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.89   1
(EJ407825) 1093012109512 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.89   1
(EJ377926) 1092963750171 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.89   1
(EJ052973) 1095456009000 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.89   1
(DQ366729) Uncultured Prochlorococcus marinus clone HF10-88H...    48   0.89   1
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    48   0.89   1
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    48   0.89   1
(DX201102) OR_ABa0070E17.f OR_ABa Oryza ridleyi genomic clon...    40   0.94   2
(EJ803948) 1093017446355 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.99   2
(EJ906973) 1093018518287 Global-Ocean-Sampling_GS-30-02-01-1...    36   1.0    2
(EJ374066) 1092963734393 Global-Ocean-Sampling_GS-28-01-01-1...    42   1.1    2
(ER622104) 1093017444440 Global-Ocean-Sampling_GS-36-01-01-2...    36   1.2    2
(ER578654) 1093015824446 Global-Ocean-Sampling_GS-36-01-01-2...    36   1.2    2
(EJ822639) 1093017544778 Global-Ocean-Sampling_GS-30-02-01-1...    32   2.2    3
(DQ984942) Medicago truncatula Ser/Thr protein kinase (PRK),...    46   3.5    1
(AC170580) Medicago truncatula chromosome 7 clone mte1-32m6,...    46   3.5    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    46   3.5    1
(AC008370) Drosophila melanogaster, chromosome 2R, region 44...    46   3.5    1
(AL160157) Human DNA sequence from clone RP11-547C18 on chro...    46   3.5    1
(AC152191) Bos taurus clone CH240-8F9, WORKING DRAFT SEQUENC...    46   3.5    1
(CU694567) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.5    1
(CU462940) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.5    1
(AC231041) Bos taurus clone CH240-492O20, WORKING DRAFT SEQU...    46   3.5    1
(AC200703) Zea mays chromosome 2 clone CH201-507O8; ZMMBBc05...    46   3.5    1
(AC191481) Atelerix albiventris clone LB4-433N20, WORKING DR...    46   3.5    1
(AC170726) Atelerix albiventris clone LB4-469K23, WORKING DR...    46   3.5    1
(AC020344) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   3.5    1
(ER349803) 1092346000970 Global-Ocean-Sampling_GS-34-01-01-1...    46   3.5    1
(EJ892097) 1093018448202 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.5    1
(EJ804444) 1093017450766 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.5    1
(EJ749530) 1092963024840 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.5    1
(EJ742266) 1092962027636 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.5    1
(EJ686687) 1092955187974 Global-Ocean-Sampling_GS-30-02-01-1...    46   3.5    1
(EJ591849) 1092961054836 Global-Ocean-Sampling_GS-29-01-01-1...    46   3.5    1
(EJ527667) 1092955197537 Global-Ocean-Sampling_GS-29-01-01-1...    46   3.5    1
(EJ474688) 1095403433301 Global-Ocean-Sampling_GS-28-01-01-1...    46   3.5    1
(EJ450632) 1093015419540 Global-Ocean-Sampling_GS-28-01-01-1...    46   3.5    1
(EJ374288) 1092963735210 Global-Ocean-Sampling_GS-28-01-01-1...    46   3.5    1
(DX333623) OR_ABa0257L21.f OR_ABa Oryza ridleyi genomic clon...    46   3.5    1
(DX207076) OR_ABa0078E18.f OR_ABa Oryza ridleyi genomic clon...    46   3.5    1
(DX179085) OR_ABa0040H12.r OR_ABa Oryza ridleyi genomic clon...    46   3.5    1
(CT362092) Sus scrofa genomic clone CH242-15L18, genomic sur...    46   3.5    1
(CP000937) Francisella philomiragia subsp. philomiragia ATCC...    46   3.5    1
(CP000915) Francisella tularensis subsp. mediasiatica FSC147...    46   3.5    1
(CP000803) Francisella tularensis subsp. holarctica FTNF002-...    46   3.5    1
(CP000608) Francisella tularensis subsp. tularensis WY96-341...    46   3.5    1
(CP000439) Francisella tularensis subsp. novicida U112, comp...    46   3.5    1
(CP000437) Francisella tularensis subsp. holarctica OSU18, c...    46   3.5    1
(AM286280) Francisella tularensis subsp. tularensis strain F...    46   3.5    1
(AM233362) Francisella tularensis subsp. holarctica LVS comp...    46   3.5    1
(AJ749949) Francisella tularensis subsp. tularensis SCHU S4 ...    46   3.5    1
(EK416256) 1095515466939 Global-Ocean-Sampling_GS-31-01-01-1...    40   4.3    2
(EK427017) 1095516038889 Global-Ocean-Sampling_GS-31-01-01-1...    40   4.8    2
(BJ413627) Dictyostelium discoideum cDNA clone:ddv16m12, 5' ...    32   4.9    3
(BJ337120) Dictyostelium discoideum cDNA clone:dda56g07, 5' ...    32   5.0    3
(BJ327726) Dictyostelium discoideum cDNA clone:dda21d17, 5' ...    32   5.3    3
(AC116812) Mus musculus chromosome 15, clone RP24-357G13, co...    34   6.5    2
(AC193556) Macaca mulatta clone CH250-177E17, *** SEQUENCING...    38   9.0    2
(AU260124) Mus musculus mRNA, clone:BED0016215, 3' end, expr...    34   9.6    2

>(BJ434207) Dictyostelium discoideum cDNA clone:ddv16o03, 3' end,
            single read.
          Length = 755

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Minus


Query: 699  ttttgatagagttgtatttgcttgtcatacaccagacattttcccaatgttaactgatat 758
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  ttttgatagagttgtatttgcttgtcatacaccagacattttcccaatgttaactgatat 618


Query: 759  gacatatccagagagaaaagtattgagtggatttaaattcactcattgtcttgcatatct 818
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617  gacatatccagagagaaaagtattgagtggatttaaattcactcattgtcttgcatatct 558


Query: 819  tcatagtgatccattgttaatgccacgtcgtagaagtacatggtcaagttggaattatat 878
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557  tcatagtgatccattgttaatgccacgtcgtagaagtacatggtcaagttggaattatat 498


Query: 879  ttatgatgatagttcattgacagagaataaattatgttgtacctattggttaaatcgtat 938
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497  ttatgatgatagttcattgacagagaataaattatgttgtacctattggttaaatcgtat 438


Query: 939  tcaaccatgggtgaatgcagaaaagtatccactttatttaactttaaatccagtatttca 998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437  tcaaccatgggtgaatgcagaaaagtatccactttatttaactttaaatccagtatttca 378


Query: 999  accaaacccatcactattacatcgtgtcattgaatatgatcatcctttgatttgtcccga 1058
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377  accaaacccatcactattacatcgtgtcattgaatatgatcatcctttgatttgtcccga 318


Query: 1059 gagtgataaagccaaatctcgtttaccaacaattcaaggtattagaaattcattttattg 1118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317  gagtgataaagccaaatctcgtttaccaacaattcaaggtattagaaattcattttattg 258


Query: 1119 tggtgcttggactggttatggtttccatgaagatggtatcacctctggtttattggctgc 1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257  tggtgcttggactggttatggtttccatgaagatggtatcacctctggtttattggctgc 198


Query: 1179 tcaattaattgatccaagtttaaataaactttggaaagttgatgtcactcgttatatcga 1238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197  tcaattaattgatccaagtttaaataaactttggaaagttgatgtcactcgttatatcga 138


Query: 1239 tgaattcccttcaaatcctga 1259
            |||||||||||||||||||||
Sbjct: 137  tgaattcccttcaaatcctga 117

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,287,262,145
Number of extensions: 73210278
Number of successful extensions: 5811034
Number of sequences better than 10.0: 93
Length of query: 1378
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1354
Effective length of database: 97,308,875,965
Effective search space: 131756218056610
Effective search space used: 131756218056610
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09577-1 (Contig-U09577-1Q) /CSM_Contig/Contig-U09577-1Q.Seq.d
         (1378 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU459003_1578(CU459003|pid:none) Magnetospirillum gryphiswaldens...   149   2e-34
CP001154_1320(CP001154|pid:none) Laribacter hongkongensis HLHK9,...   146   1e-33
CP000463_2713(CP000463|pid:none) Rhodopseudomonas palustris BisA...   139   3e-31
CP000092_193(CP000092|pid:none) Ralstonia eutropha JMP134 megapl...   138   5e-31
CP000250_2894(CP000250|pid:none) Rhodopseudomonas palustris HaA2...   138   5e-31
CP000283_2557(CP000283|pid:none) Rhodopseudomonas palustris BisB...   137   7e-31
CU234118_3693(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   137   1e-30
AP009387_332(AP009387|pid:none) Burkholderia multivorans ATCC 17...   136   2e-30
CP000270_1014(CP000270|pid:none) Burkholderia xenovorans LB400 c...   136   2e-30
CP000150_59(CP000150|pid:none) Burkholderia sp. 383 chromosome 3...   136   2e-30
CP000633_73(CP000633|pid:none) Agrobacterium vitis S4 chromosome...   136   2e-30
AE007869_1934(AE007869|pid:none) Agrobacterium tumefaciens str. ...   135   5e-30
CP001504_821(CP001504|pid:none) Burkholderia glumae BGR1 chromos...   134   8e-30
CP000512_3504(CP000512|pid:none) Acidovorax citrulli AAC00-1, co...   133   1e-29
CP000301_2527(CP000301|pid:none) Rhodopseudomonas palustris BisB...   133   2e-29
CP001280_1980(CP001280|pid:none) Methylocella silvestris BL2, co...   132   3e-29
CP000539_2851(CP000539|pid:none) Acidovorax sp. JS42, complete g...   132   3e-29
CP000608_302(CP000608|pid:none) Francisella tularensis subsp. tu...   129   2e-28
AK117243_1(AK117243|pid:none) Arabidopsis thaliana At3g23510 mRN...   127   7e-28
AP009384_2436(AP009384|pid:none) Azorhizobium caulinodans ORS 57...   127   1e-27
AY065013_1(AY065013|pid:none) Arabidopsis thaliana AT3g23510/MEE...   126   2e-27
CP001281_1012(CP001281|pid:none) Thauera sp. MZ1T, complete geno...   126   2e-27
CU207211_2288(CU207211|pid:none) Herminiimonas arsenicoxydans ch...   125   3e-27
CP000774_1862(CP000774|pid:none) Parvibaculum lavamentivorans DS...   125   4e-27
CP000555_236(CP000555|pid:none) Methylibium petroleiphilum PM1, ...   124   6e-27
DQ536149_1(DQ536149|pid:none) Populus trichocarpa clone 5236816 ...   123   1e-26
EU956586_1(EU956586|pid:none) Zea mays clone 1567212 cyclopropan...   122   2e-26
CP000830_367(CP000830|pid:none) Dinoroseobacter shibae DFL 12, c...   120   9e-26
CR954217_213(CR954217|pid:none) Ostreococcus tauri strain OTTH05...   116   2e-24
CP000596_211(CP000596|pid:none) Ostreococcus lucimarinus CCE9901...   115   4e-24
CP000529_1436(CP000529|pid:none) Polaromonas naphthalenivorans C...   115   4e-24
CP000158_1767(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...   113   2e-23
CP000577_2736(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17...   110   9e-23
CP000089_488(CP000089|pid:none) Dechloromonas aromatica RCB, com...   110   1e-22
CP000661_2911(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17...   110   2e-22
CP000647_4657(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...   108   3e-22
AP006725_604(AP006725|pid:none) Klebsiella pneumoniae NTUH-K2044...   108   3e-22
CP001326_715(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   107   1e-21
CP000264_4020(CP000264|pid:none) Jannaschia sp. CCS1, complete g...   107   1e-21
CP000653_1479(CP000653|pid:none) Enterobacter sp. 638, complete ...   107   1e-21
CP000967_2949(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P...   106   2e-21
AE013598_1885(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...   106   2e-21
AM181176_727(AM181176|pid:none) Pseudomonas fluorescens SBW25 co...   105   4e-21
AM039952_1433(AM039952|pid:none) Xanthomonas campestris pv. vesi...   104   7e-21
AE008923_1356(AE008923|pid:none) Xanthomonas axonopodis pv. citr...   104   7e-21
BA000037_1335(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch...   104   9e-21
CU468135_2234(CU468135|pid:none) Erwinia tasmaniensis strain ET1...   104   9e-21
AP000374_5(AP000374|pid:none) Arabidopsis thaliana genomic DNA, ...   103   2e-20
AB023036_1(AB023036|pid:none) Arabidopsis thaliana genomic DNA, ...   102   3e-20
BA000031_1121(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22...   102   3e-20
AE003852_1101(AE003852|pid:none) Vibrio cholerae O1 biovar eltor...   101   6e-20
CP000031_1450(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple...   101   7e-20
CU638743_521(CU638743|pid:none) Podospora anserina genomic DNA c...   101   7e-20
CP000926_2083(CP000926|pid:none) Pseudomonas putida GB-1, comple...   100   9e-20
CP000082_739(CP000082|pid:none) Psychrobacter arcticus 273-4, co...   100   1e-19
AP007155_994(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   100   2e-19
AP009493_5877(AP009493|pid:none) Streptomyces griseus subsp. gri...   100   2e-19
AE008922_1310(AE008922|pid:none) Xanthomonas campestris pv. camp...   100   2e-19
CP000323_727(CP000323|pid:none) Psychrobacter cryohalolentis K5,...    99   4e-19
CP000961_2749(CP000961|pid:none) Shewanella woodyi ATCC 51908, c...    99   4e-19
FP236842_2366(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9...    99   5e-19
BX950851_2191(BX950851|pid:none) Erwinia carotovora subsp. atros...    98   6e-19
CP000075_957(CP000075|pid:none) Pseudomonas syringae pv. syringa...    98   8e-19
CP000058_965(CP000058|pid:none) Pseudomonas syringae pv. phaseol...    98   8e-19
CP000083_1344(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    97   1e-18
CP000859_350(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c...    97   2e-18
CP000514_1462(CP000514|pid:none) Marinobacter aquaeolei VT8, com...    96   4e-18
AM743169_2245(AM743169|pid:none) Stenotrophomonas maltophilia K2...    95   5e-18
DQ665844_4(DQ665844|pid:none) Pseudomonas putida strain DOT-T1E ...    95   7e-18
CP000282_2464(CP000282|pid:none) Saccharophagus degradans 2-40, ...    95   7e-18
CP000606_1476(CP000606|pid:none) Shewanella loihica PV-4, comple...    95   7e-18
CP000444_1232(CP000444|pid:none) Shewanella sp. MR-7, complete g...    94   1e-17
CP000469_1159(CP000469|pid:none) Shewanella sp. ANA-3, complete ...    94   2e-17
CP000680_1060(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    93   2e-17
CP000712_2968(CP000712|pid:none) Pseudomonas putida F1, complete...    93   2e-17
CP000509_4484(CP000509|pid:none) Nocardioides sp. JS614, complet...    93   3e-17
CP000285_459(CP000285|pid:none) Chromohalobacter salexigens DSM ...    92   3e-17
CP001111_1955(CP001111|pid:none) Stenotrophomonas maltophilia R5...    92   3e-17
CP000507_809(CP000507|pid:none) Shewanella amazonensis SB2B, com...    92   4e-17
CP000302_3349(CP000302|pid:none) Shewanella denitrificans OS217,...    92   6e-17
AP011115_2284(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...    91   7e-17
CP001087_4788(CP001087|pid:none) Desulfobacterium autotrophicum ...    90   2e-16
CP000563_2996(CP000563|pid:none) Shewanella baltica OS155, compl...    89   4e-16
CP001172_1214(CP001172|pid:none) Acinetobacter baumannii AB307-0...    89   5e-16
CP000891_3188(CP000891|pid:none) Shewanella baltica OS195, compl...    89   5e-16
CP000431_2526(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    89   5e-16
CP000681_2694(CP000681|pid:none) Shewanella putrefaciens CN-32, ...    88   6e-16
AM420293_6562(AM420293|pid:none) Saccharopolyspora erythraea NRR...    88   6e-16
CP001133_878(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ...    88   6e-16
CP000094_4734(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...    88   8e-16
CP000388_1321(CP000388|pid:none) Pseudoalteromonas atlantica T6c...    88   8e-16
CP000482_125(CP000482|pid:none) Pelobacter propionicus DSM 2379,...    87   1e-15
CP000910_3426(CP000910|pid:none) Renibacterium salmoninarum ATCC...    86   3e-15
AM286690_767(AM286690|pid:none) Alcanivorax borkumensis SK2, com...    86   4e-15
AM270168_12(AM270168|pid:none) Aspergillus niger contig An08c013...    85   5e-15
CP001103_1424(CP001103|pid:none) Alteromonas macleodii 'Deep eco...    84   2e-14
AL355927_13(AL355927|pid:none) Neurospora crassa DNA linkage gro...    82   3e-14
AP008957_2321(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    81   1e-13
CP000510_969(CP000510|pid:none) Psychromonas ingrahamii 37, comp...    80   1e-13
CP000325_1167(CP000325|pid:none) Mycobacterium ulcerans Agy99, c...    78   7e-13
AY574036_1(AY574036|pid:none) Gossypium hirsutum cyclopropane fa...    77   1e-12
AM270079_38(AM270079|pid:none) Aspergillus niger contig An04c018...    73   2e-11
AP009552_2790(AP009552|pid:none) Microcystis aeruginosa NIES-843...    71   8e-11
CP000863_3469(CP000863|pid:none) Acinetobacter baumannii ACICU, ...    62   5e-08
AM420293_16(AM420293|pid:none) Saccharopolyspora erythraea NRRL2...    59   4e-07
CR543861_3094(CR543861|pid:none) Acinetobacter sp. ADP1 complete...    59   5e-07
CU468230_3228(CU468230|pid:none) Acinetobacter baumannii str. SD...    58   7e-07
AB088224_14(AB088224|pid:none) Streptomyces rochei plasmid pSLA2...    54   2e-05
CP001287_501(CP001287|pid:none) Cyanothece sp. PCC 8801, complet...    47   0.002
CP000117_36(CP000117|pid:none) Anabaena variabilis ATCC 29413, c...    45   0.006
CP000806_2231(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    44   0.018
BA000022_1356(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,...    44   0.018
CP000851_1702(CP000851|pid:none) Shewanella pealeana ATCC 700345...    42   0.040
CP000393_3131(CP000393|pid:none) Trichodesmium erythraeum IMS101...    41   0.089
CP000931_2532(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...    40   0.20
FJ175677_1(FJ175677|pid:none) Mantoniella squamata putative plas...    39   0.34
CP000923_1344(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    39   0.44
CP000924_941(CP000924|pid:none) Thermoanaerobacter pseudethanoli...    39   0.44
CP000854_2234(CP000854|pid:none) Mycobacterium marinum M, comple...    38   0.75
CP001083_436(CP001083|pid:none) Clostridium botulinum Ba4 str. 6...    38   0.75
CP000688_243(CP000688|pid:none) Dehalococcoides sp. BAV1, comple...    37   1.3
AJ965256_119(AJ965256|pid:none) Dehalococcoides sp. CBDB1 comple...    37   1.3
CP000806_3750(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    37   2.2
CP000542_4875(CP000542|pid:none) Verminephrobacter eiseniae EF01...    36   2.9
AP008231_2113(AP008231|pid:none) Synechococcus elongatus PCC 630...    36   2.9
CT971583_2273(CT971583|pid:none) Synechococcus WH7803 complete g...    36   2.9
(P26294) RecName: Full=Phytoene dehydrogenase;          EC=1.14....    36   2.9
CT978603_238(CT978603|pid:none) Synechococcus sp. RCC307 genomic...    36   3.7
AM412317_431(AM412317|pid:none) Clostridium botulinum A str. ATC...    36   3.7
CP000821_1930(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...    35   4.9
AP008213_949(AP008213|pid:none) Oryza sativa (japonica cultivar-...    35   4.9
BA000039_1560(BA000039|pid:none) Thermosynechococcus elongatus B...    35   4.9
BX548175_2579(BX548175|pid:none) Prochlorococcus marinus MIT9313...    35   4.9
CP001287_301(CP001287|pid:none) Cyanothece sp. PCC 8801, complet...    35   4.9
CP000553_217(CP000553|pid:none) Prochlorococcus marinus str. NAT...    35   6.4
AE017126_167(AE017126|pid:none) Prochlorococcus marinus subsp. m...    35   6.4
CP000815_291(CP000815|pid:none) Paulinella chromatophora chromat...    35   6.4
AE017354_182(AE017354|pid:none) Legionella pneumophila subsp. pn...    35   8.3
AL844506_37(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    35   8.3

>CU459003_1578(CU459003|pid:none) Magnetospirillum gryphiswaldense
            MSR-1, WORKING DRAFT SEQUENCE, 373 unordered pieces.
          Length = 432

 Score =  149 bits (377), Expect = 2e-34
 Identities = 72/163 (44%), Positives = 99/163 (60%)
 Frame = +1

Query: 691  TQHFDRVVFACHTPDIFPMLTDMTYPERKVLSGFKFTHCLAYLHSDPLLMPRRRSTWSSW 870
            ++ FD VV   H  +   +L+D T  ER VL  F +   LA LHSD  LMP R+  W++W
Sbjct: 260  SETFDDVVIGAHADEALALLSDPTPDERTVLGAFAYQENLAVLHSDSRLMPTRKRVWAAW 319

Query: 871  NYIYDDSSLTENKLCCTYWLNRIQPWVNAEKYPLYLTLNPVFQPNPSLLHRVIEYDHPLI 1050
            NY+   SS     LC TYW+NR+Q     +  PL++TLNPV    P L+HR I Y HP+
Sbjct: 320  NYLARTSSEGARHLCVTYWMNRLQDL--PDDLPLFVTLNPVVAAKPDLVHRSISYHHPVF 377

Query: 1051 CPESDKAKSRLPTIQGIRNSFYCGAWTGYGFHEDGITSGLLAA 1179
               +  A+ RLP++QG  +++YCG++ GYGFHED  +SGL  A
Sbjct: 378  DTAAMTAQKRLPSLQGGNHTWYCGSYFGYGFHEDAFSSGLAVA 420

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
 Frame = +1

Query: 178 HNCTVFEKGNYLGGHTNTVQVKFQEE-TVKIDTGFLVYTPQKYPNLMTLFKRLGIKNGES 354
           H+ T+FEK  ++GGH NTV+V   +   V +DTGF+VY  + YPNL+ +F +L +    +
Sbjct: 34  HDVTIFEKNAHVGGHANTVEVIAPDGGAVAVDTGFIVYNERNYPNLIRMFDQLQVPTQAT 93

Query: 355 DMSFGYSLNARQGIEKTVEMEVVANEITTNPIKAPIRREIEWCSDNLSTIFAQWQNLFRP 534
           DMSF  SL+                              +E+   +L+ +F QW NL  P
Sbjct: 94  DMSFAVSLDG---------------------------GGLEYSGGSLTGLFGQWGNLVSP 126

Query: 535 SFWRLLIDLYRF 570
            FW ++ D+ RF
Sbjct: 127 RFWGMVADILRF 138

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,005,605,903
Number of extensions: 38873192
Number of successful extensions: 103601
Number of sequences better than 10.0: 139
Number of HSP's gapped: 103240
Number of HSP's successfully gapped: 267
Length of query: 459
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 327
Effective length of database: 618,001,159
Effective search space: 202086378993
Effective search space used: 202086378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U09577-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 7
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0