Contig-U09569-1 |
Contig ID |
Contig-U09569-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1424 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
3658944 |
End point |
3660352 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
8 |
Number of EST |
14 |
Link to clone list |
U09569 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.16 |
Homology vs DNA |
Query= Contig-U09569-1 (Contig-U09569-1Q) /CSM_Contig/Contig-U09569-1Q.Seq.d (1434 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ430101) Dictyostelium discoideum cDNA clone:ddv6h04, 3' e... 1330 0.0 1 (BJ434169) Dictyostelium discoideum cDNA clone:ddv16h03, 3' ... 1318 0.0 1 (BJ432165) Dictyostelium discoideum cDNA clone:ddv17j24, 3' ... 1316 0.0 1 (BJ433808) Dictyostelium discoideum cDNA clone:ddv23b03, 3' ... 1209 0.0 1 (BJ433981) Dictyostelium discoideum cDNA clone:ddv23e13, 3' ... 1172 0.0 1 (BJ415570) Dictyostelium discoideum cDNA clone:ddv23b03, 5' ... 1136 0.0 1 (BJ430163) Dictyostelium discoideum cDNA clone:ddv6e09, 3' e... 1096 0.0 1 (BJ435287) Dictyostelium discoideum cDNA clone:ddv26m14, 3' ... 1061 0.0 1 (BJ414048) Dictyostelium discoideum cDNA clone:ddv17j24, 5' ... 1033 0.0 1 (BJ411913) Dictyostelium discoideum cDNA clone:ddv6e09, 5' e... 1021 0.0 1 (BJ413380) Dictyostelium discoideum cDNA clone:ddv15g09, 5' ... 801 0.0 1 (BJ411857) Dictyostelium discoideum cDNA clone:ddv6h04, 5' e... 783 0.0 2 (BJ413524) Dictyostelium discoideum cDNA clone:ddv16h03, 5' ... 264 4e-92 3 (BJ416514) Dictyostelium discoideum cDNA clone:ddv26m14, 5' ... 121 8e-23 1 (BJ415810) Dictyostelium discoideum cDNA clone:ddv23g20, 5' ... 36 7e-07 4 (BJ413214) Dictyostelium discoideum cDNA clone:ddv14j17, 5' ... 36 9e-07 4 (BJ387798) Dictyostelium discoideum cDNA clone:dds5f06, 5' e... 36 1e-06 4 (BJ363423) Dictyostelium discoideum cDNA clone:ddc26f15, 5' ... 36 1e-06 4 (BJ415342) Dictyostelium discoideum cDNA clone:ddv22c07, 5' ... 36 1e-06 4 (BJ415522) Dictyostelium discoideum cDNA clone:ddv22i19, 5' ... 36 2e-06 4 (BJ411740) Dictyostelium discoideum cDNA clone:ddv5j18, 5' e... 36 2e-06 4 (BJ411669) Dictyostelium discoideum cDNA clone:ddv5h07, 5' e... 36 3e-06 4 (BJ391311) Dictyostelium discoideum cDNA clone:dds13k06, 5' ... 36 3e-06 4 (BJ413720) Dictyostelium discoideum cDNA clone:ddv16a24, 5' ... 36 3e-06 4 (BJ413779) Dictyostelium discoideum cDNA clone:ddv16n22, 5' ... 36 3e-06 4 (BJ387679) Dictyostelium discoideum cDNA clone:dds4m06, 5' e... 36 3e-06 4 (BJ388854) Dictyostelium discoideum cDNA clone:dds16c17, 5' ... 36 4e-06 4 (BJ413607) Dictyostelium discoideum cDNA clone:ddv16i12, 5' ... 36 4e-06 4 (BJ388987) Dictyostelium discoideum cDNA clone:dds17c05, 5' ... 36 4e-06 4 (BJ415517) Dictyostelium discoideum cDNA clone:ddv22h19, 5' ... 36 5e-06 4 (BJ389151) Dictyostelium discoideum cDNA clone:dds17n17, 5' ... 36 5e-06 4 (BJ416443) Dictyostelium discoideum cDNA clone:ddv26o08, 5' ... 36 6e-06 4 (BJ416042) Dictyostelium discoideum cDNA clone:ddv24o13, 5' ... 36 6e-06 4 (BJ415462) Dictyostelium discoideum cDNA clone:ddv22l16, 5' ... 36 6e-06 4 (BJ415569) Dictyostelium discoideum cDNA clone:ddv23b02, 5' ... 36 9e-06 4 (BJ411526) Dictyostelium discoideum cDNA clone:ddv4c24, 5' e... 36 1e-05 4 (BJ415584) Dictyostelium discoideum cDNA clone:ddv23d05, 5' ... 36 2e-05 4 (BJ413274) Dictyostelium discoideum cDNA clone:ddv14m19, 5' ... 54 2e-05 2 (BJ324450) Dictyostelium discoideum cDNA clone:dda6k08, 5' e... 54 2e-05 2 (BJ411658) Dictyostelium discoideum cDNA clone:ddv5d09, 5' e... 36 3e-05 4 (BJ387292) Dictyostelium discoideum cDNA clone:dds1k09, 5' e... 36 0.001 3 (BJ411600) Dictyostelium discoideum cDNA clone:ddv5f02, 5' e... 36 0.001 3 (BJ417234) Dictyostelium discoideum cDNA clone:ddv29n24, 5' ... 36 0.002 3 (BJ413567) Dictyostelium discoideum cDNA clone:ddv16a08, 5' ... 36 0.002 3 (BJ360925) Dictyostelium discoideum cDNA clone:ddc8h13, 5' e... 36 0.002 3 (BJ390362) Dictyostelium discoideum cDNA clone:dds22k04, 5' ... 36 0.002 3 (BJ412219) Dictyostelium discoideum cDNA clone:ddv7m08, 5' e... 36 0.002 3 (BJ362130) Dictyostelium discoideum cDNA clone:ddc20l10, 5' ... 36 0.002 3 (BJ413452) Dictyostelium discoideum cDNA clone:ddv15j17, 5' ... 36 0.002 3 (BJ412315) Dictyostelium discoideum cDNA clone:ddv7h24, 5' e... 36 0.002 3 (BJ390920) Dictyostelium discoideum cDNA clone:dds14b12, 5' ... 36 0.002 3 (BJ387557) Dictyostelium discoideum cDNA clone:dds3k10, 5' e... 36 0.002 3 (BJ390887) Dictyostelium discoideum cDNA clone:dds14i01, 5' ... 36 0.002 3 (BJ388007) Dictyostelium discoideum cDNA clone:dds7j09, 5' e... 36 0.002 3 (BJ413985) Dictyostelium discoideum cDNA clone:ddv17k15, 5' ... 36 0.002 3 (BJ361528) Dictyostelium discoideum cDNA clone:ddc17f15, 5' ... 36 0.002 3 (BJ410855) Dictyostelium discoideum cDNA clone:ddv2i06, 5' e... 36 0.002 3 (BJ389913) Dictyostelium discoideum cDNA clone:dds20e17, 5' ... 36 0.002 3 (BJ414653) Dictyostelium discoideum cDNA clone:ddv20b04, 5' ... 36 0.002 3 (BJ412296) Dictyostelium discoideum cDNA clone:ddv7b23, 5' e... 36 0.003 3 (BJ413437) Dictyostelium discoideum cDNA clone:ddv15g13, 5' ... 36 0.006 3 (BJ413401) Dictyostelium discoideum cDNA clone:ddv15m07, 5' ... 36 0.006 3 (BJ411367) Dictyostelium discoideum cDNA clone:ddv4j03, 5' e... 36 0.006 3 (BJ388052) Dictyostelium discoideum cDNA clone:dds7k13, 5' e... 36 0.006 3 (BJ360307) Dictyostelium discoideum cDNA clone:ddc5p08, 5' e... 36 0.006 3 (BJ413496) Dictyostelium discoideum cDNA clone:ddv16b01, 5' ... 36 0.007 3 (BJ413399) Dictyostelium discoideum cDNA clone:ddv15l07, 5' ... 36 0.007 3 (BJ388411) Dictyostelium discoideum cDNA clone:dds9n10, 5' e... 36 0.007 3 (BJ412805) Dictyostelium discoideum cDNA clone:ddv9n19, 5' e... 36 0.007 3 (BJ360543) Dictyostelium discoideum cDNA clone:ddc6k14, 5' e... 36 0.007 3 (BJ417108) Dictyostelium discoideum cDNA clone:ddv29o12, 5' ... 36 0.007 3 (BJ417098) Dictyostelium discoideum cDNA clone:ddv29m08, 5' ... 36 0.007 3 (BJ417756) Dictyostelium discoideum cDNA clone:ddv28n13, 5' ... 36 0.007 3 (BJ412786) Dictyostelium discoideum cDNA clone:ddv9i20, 5' e... 36 0.007 3 (BJ417484) Dictyostelium discoideum cDNA clone:ddv30c24, 5' ... 36 0.007 3 (BJ387256) Dictyostelium discoideum cDNA clone:dds1k02, 5' e... 36 0.007 3 (BJ410003) Dictyostelium discoideum cDNA clone:ddv10i22, 5' ... 36 0.007 3 (BJ363261) Dictyostelium discoideum cDNA clone:ddc25f24, 5' ... 36 0.007 3 (AU263564) Dictyostelium discoideum vegetative cDNA clone:VS... 36 0.007 3 (BJ360389) Dictyostelium discoideum cDNA clone:ddc5j22, 5' e... 36 0.007 3 (BJ362985) Dictyostelium discoideum cDNA clone:ddc24o08, 5' ... 36 0.007 3 (BJ412807) Dictyostelium discoideum cDNA clone:ddv9n21, 5' e... 36 0.007 3 (BJ363430) Dictyostelium discoideum cDNA clone:ddc26i17, 5' ... 36 0.007 3 (BJ389876) Dictyostelium discoideum cDNA clone:dds20l12, 5' ... 36 0.007 3 (BJ390656) Dictyostelium discoideum cDNA clone:dds23b10, 5' ... 36 0.007 3 (BJ412637) Dictyostelium discoideum cDNA clone:ddv9f12, 5' e... 36 0.008 3 (BJ411102) Dictyostelium discoideum cDNA clone:ddv3b05, 5' e... 36 0.008 3 (BJ411362) Dictyostelium discoideum cDNA clone:ddv4h05, 5' e... 36 0.008 3 (BJ411241) Dictyostelium discoideum cDNA clone:ddv3f18, 5' e... 36 0.008 3 (BJ410515) Dictyostelium discoideum cDNA clone:ddv12h20, 5' ... 36 0.008 3 (BJ412064) Dictyostelium discoideum cDNA clone:ddv6h19, 5' e... 36 0.008 3 (AU266957) Dictyostelium discoideum vegetative cDNA clone:VS... 36 0.008 3 (AU270524) Dictyostelium discoideum vegetative cDNA clone:VS... 36 0.008 3 (BJ417333) Dictyostelium discoideum cDNA clone:ddv30b12, 5' ... 36 0.008 3 (BJ413140) Dictyostelium discoideum cDNA clone:ddv14g10, 5' ... 36 0.008 3 (BJ391127) Dictyostelium discoideum cDNA clone:dds15o02, 5' ... 36 0.008 3 (BJ387017) Dictyostelium discoideum cDNA clone:dds11m19, 5' ... 36 0.008 3 (BJ417405) Dictyostelium discoideum cDNA clone:ddv30b18, 5' ... 36 0.008 3 (BJ410067) Dictyostelium discoideum cDNA clone:ddv11h03, 5' ... 36 0.008 3 (BJ416929) Dictyostelium discoideum cDNA clone:ddv27f20, 5' ... 36 0.008 3
>(BJ430101) Dictyostelium discoideum cDNA clone:ddv6h04, 3' end, single read. Length = 749
Score = 1330 bits (671), Expect = 0.0 Identities = 671/671 (100%) Strand = Plus / Minus
Query: 687 aaacaaatacttcaagctgaatcattggttgatattggtgatttcttttattggttagcc 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 749 aaacaaatacttcaagctgaatcattggttgatattggtgatttcttttattggttagcc 690
Query: 747 gattcgatgatggagggtgaccaatacggctacatagatgaattatgtagtccattggtt 806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 689 gattcgatgatggagggtgaccaatacggctacatagatgaattatgtagtccattggtt 630
Query: 807 gacgctatcaatagcggtaccagtggtatcgatttgattacagtctactccaattacact 866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 629 gacgctatcaatagcggtaccagtggtatcgatttgattacagtctactccaattacact 570
Query: 867 atcaacacttggggtaaagttttaggtactccagatgaatattcaacagcttggcaacaa 926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 atcaacacttggggtaaagttttaggtactccagatgaatattcaacagcttggcaacaa 510
Query: 927 aatgtcacctatgacccatcaaagagtgccgatagagcttggtggtatcaaacttgtagt 986 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 aatgtcacctatgacccatcaaagagtgccgatagagcttggtggtatcaaacttgtagt 450
Query: 987 tcattaggttggatgcaagctgcaccatctgaaaattcaattagatcttcattggtaaat 1046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 tcattaggttggatgcaagctgcaccatctgaaaattcaattagatcttcattggtaaat 390
Query: 1047 atgacctatttccaaactcattgtcaacaattattcggtcaagccatttggcctccaaat 1106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 atgacctatttccaaactcattgtcaacaattattcggtcaagccatttggcctccaaat 330
Query: 1107 gtaaatgctgtaaatactcaatacggtggtgatcaatcaaatccattattgaatgcagct 1166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 gtaaatgctgtaaatactcaatacggtggtgatcaatcaaatccattattgaatgcagct 270
Query: 1167 ggtactaatattttattcaccaatggtcatgctgatccatggagtcaagcttcaatcgta 1226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 ggtactaatattttattcaccaatggtcatgctgatccatggagtcaagcttcaatcgta 210
Query: 1227 aattcaaattatccaaatgttgaaccctctgcaatgaccacttgtcgtaaatgtggtcat 1286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 aattcaaattatccaaatgttgaaccctctgcaatgaccacttgtcgtaaatgtggtcat 150
Query: 1287 tgtgtagatttaagaggttgtccaggtggttgtgatttaccaaataatttagatcaagtt 1346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 tgtgtagatttaagaggttgtccaggtggttgtgatttaccaaataatttagatcaagtt 90
Query: 1347 agatcactttc 1357 ||||||||||| Sbjct: 89 agatcactttc 79
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,409,728,272 Number of extensions: 81629142 Number of successful extensions: 6548181 Number of sequences better than 10.0: 397 Length of query: 1434 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1410 Effective length of database: 97,308,875,965 Effective search space: 137205515110650 Effective search space used: 137205515110650 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.26 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
8 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |