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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09555-1
Contig ID Contig-U09555-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09555-1 (Contig-U09555-1Q) /CSM_Contig/Contig-U09555-1Q.Seq.d
CTGTTGGCCTACTGGCAAATAATTTGATTTAGTTTTTACCACCATATTTC
ATTAATCCATTTTTATTATCAAGGAAAAAATAAAATAAAAGAATAATTAA
TAAATAATGAATTTTAATAAAGCAAGCACAACATTAAAAGATACAAAGAA
ATTAATTATTGTTTTGGAACATGCAACATTAGATACAGTTAAAGTCAAAG
AAAGCTTTCAATTATTAAATTGTGATGATCATGCTGACATTTTAAAAAAA
CATGGTAAAGAAGCATCAGAAGCTAGACCAGATATTTTACATCAATGTTT
ATTAGCACTTTTTGATAGTCCACTCAATAAAGCTGGTCTTCTTCAAGTTT
TCATAAAAACTACTAAAAATGTTTTAATTGAAGTACATCCACAAACTAGA
ATTCCAAGAACTTTTAATAGATTTGCTGGTTTAATGGTTCAATTATTAAA
GAAATTAAGCATTAGAGCAACAAATGGACCAGATAAATTATTTAAAGTTA
TTAAGAATCCAATTACAGATCATTTAGCACCAGGAACTAAAATATA----
------ACTTCATTCTNTGCACCAAAATGTGTAGATTTATTTGAATTTGT
TCCAGAAATTTTCGGATATGATCCATTACCAGTGATTCCAGTTTCAACTA
CACCAACAGGTGTAGCATTAGGTTCATCAACCAATAACAACAACAATGTA
AATAGTATTCAATCATTAAATTCATTAGGTGGAGCACAAGTTAGAAGTGC
TGGTGAAAGTTATTATGAGGGTATGGAAGATGAAGAAGCAGCAGAAGAAG
AAGAAAAAACAACAGAAACAAATAATAAAAATAAAAATAAAAGAAAACAA
GATGAAAAATCTGATAATGATAAAAAGAAACAAAAAAACTTCAAATACTA
CAACTACAACTACTTCGACTGCAACAACAGTACAAAAGAAACCAGAAAAG
AAATCTGATCAATTAAATGGTTTACAACAAGTTTGTATTGTAATTGGTGC
CATGTCAACTGGTGCTATGAAAATCGAGTATAAACACGAAGAAATCGCTT
TCTCAAATTATCCTTTATCCGCTGCTGGTGCTTGTTTTAAAATTACTACA
GTTTTTTAAAGACAATGGGGTATCTTGTAAAAGAAACAAAAATAAATTAA
AAAAAATTAAAAAATAAATAAAAAAAAATAAATAAAAA
Gap gap included
Contig length 1178
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2200338
End point 2201505
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09555
List of clone(s) 

est1=VFB668F,1,547
est2=VFB668Z,548,1180
Translated Amino Acid sequence 
cwptgk*fdlvfttifh*sifiikekik*knn**IMNFNKASTTLKDTKKLIIVLEHATL
DTVKVKESFQLLNCDDHADILKKHGKEASEARPDILHQCLLALFDSPLNKAGLLQVFIKT
TKNVLIEVHPQTRIPRTFNRFAGLMVQLLKKLSIRATNGPDKLFKVIKNPITDHLAPGTK
I---

---TSFXAPKCVDLFEFVPEIFGYDPLPVIPVSTTPTGVALGSSTNNNNNVNSIQSLNSL
GGAQVRSAGESYYEGMEDEEAAEEEEKTTETNNKNKNKRKQDEKSDNDKKKQKNFKYYNY
NYFDCNNSTKETRKEI*sikwfttslycnwchvnwcyenrv*trrnrflklsfircwclf
*nyysflktmgylvketkin*kklknk*kkink
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywqii*fsfyhhislihfyyqgknkike*linnef**skhnikrykeinycfgtcni
rys*sqrklsiikl**sc*hfkktw*rsirs*tryftsmfistf**stq*swssssfhkn
y*kcfn*ststn*nsknf**icwfngsiikeikh*snkwtr*ii*sy*esnyrsfstrn*
ni---

---TSFXAPKCVDLFEFVPEIFGYDPLPVIPVSTTPTGVALGSSTNNNNNVNSIQSLNSL
GGAQVRSAGESYYEGMEDEEAAEEEEKTTETNNKNKNKRKQDEKSDNDKKKQKNFKYYNY
NYFDCNNSTKETRKEI*sikwfttslycnwchvnwcyenrv*trrnrflklsfircwclf
*nyysflktmgylvketkin*kklknk*kkink

Frame B:
cwptgk*fdlvfttifh*sifiikekik*knn**IMNFNKASTTLKDTKKLIIVLEHATL
DTVKVKESFQLLNCDDHADILKKHGKEASEARPDILHQCLLALFDSPLNKAGLLQVFIKT
TKNVLIEVHPQTRIPRTFNRFAGLMVQLLKKLSIRATNGPDKLFKVIKNPITDHLAPGTK
I---

---lhsxhqnv*iylnlfqkfsdmihyq*fqfqlhqqv*h*vhqpitttm*ivfnh*ih*
vehklevlvkvimrvwkmkkqqkkkkkqqkqiikikikenkmknlimikrnkktsntttt
ttstattvqkkpekksdqlnglqqvcivigamstgamkieykheeiafsnyplsaagacf
kittvf*rqwgil*kkqk*ikkn*kinkkk*ik

Frame C:
vgllannli*flppyfinpfllsrkk*nkriink**ilikqaqh*kiqrn*llfwnmqh*
iqlkskkafny*ivmimltf*knmvkkhqkldqifyinvy*hflivhsiklvffkfs*kl
lkmf*lkyihklefqellidllv*wfny*rn*aleqqmdqinylkllriqlqii*hqelk
y---

---filctkmcrfi*icsrnfri*sitsdssfnytnrcsirfinq*qqqck*ysiikfir
wsts*kcw*kll*gygr*rssrrrrknnrnk**k*k*kktr*ki****ketkklqilqlq
llrlqqqykrnqkrnlin*mvynkfvl*lvpcqlvl*kssintkkslsqiilypllvlvl
kllqffkdngvsckrnknklkkikk*ikknk*k
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09555-1 (Contig-U09555-1Q)
/CSM_Contig/Contig-U09555-1Q.Seq.d
         (1188 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09555-1 (Contig-U09555-1Q) /CSM_Contig/Conti...  1225  0.0
Contig-U12653-1 (Contig-U12653-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10453-1 (Contig-U10453-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09675-1 (Contig-U09675-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U08277-1 (Contig-U08277-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12497-1 (Contig-U12497-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12096-1 (Contig-U12096-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U05871-1 (Contig-U05871-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14540-1 (Contig-U14540-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U14809-1 (Contig-U14809-1Q) /CSM_Contig/Conti...    32  1.3

>Contig-U09555-1 (Contig-U09555-1Q) /CSM_Contig/Contig-U09555-1Q.Seq.d
          Length = 1188

 Score = 1225 bits (618), Expect = 0.0
 Identities = 665/672 (98%)
 Strand = Plus / Plus

                                                                       
Query: 122 gcaagcacaacattaaaagatacaaagaaattaattattgttttggaacatgcaacatta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcaagcacaacattaaaagatacaaagaaattaattattgttttggaacatgcaacatta 181

                                                                       
Query: 182 gatacagttaaagtcaaagaaagctttcaattattaaattgtgatgatcatgctgacatt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gatacagttaaagtcaaagaaagctttcaattattaaattgtgatgatcatgctgacatt 241

                                                                       
Query: 242 ttnnnnnnncatggtaaagaagcatcagaagctagaccagatattttacatcaatgttta 301
           ||       |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttaaaaaaacatggtaaagaagcatcagaagctagaccagatattttacatcaatgttta 301

                                                                       
Query: 302 ttagcactttttgatagtccactcaataaagctggtcttcttcaagttttcataaaaact 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttagcactttttgatagtccactcaataaagctggtcttcttcaagttttcataaaaact 361

                                                                       
Query: 362 actaaaaatgttttaattgaagtacatccacaaactagaattccaagaacttttaataga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 actaaaaatgttttaattgaagtacatccacaaactagaattccaagaacttttaataga 421

                                                                       
Query: 422 tttgctggtttaatggttcaattattaaagaaattaagcattagagcaacaaatggacca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tttgctggtttaatggttcaattattaaagaaattaagcattagagcaacaaatggacca 481

                                                                       
Query: 482 gataaattatttaaagttattaagaatccaattacagatcatttagcaccaggaactaaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gataaattatttaaagttattaagaatccaattacagatcatttagcaccaggaactaaa 541

                                                                       
Query: 542 atatannnnnnnnnnacttcattctntgcaccaaaatgtgtagatttatttgaatttgtt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atatannnnnnnnnnacttcattctntgcaccaaaatgtgtagatttatttgaatttgtt 601

                                                                       
Query: 602 ccagaaattttcggatatgatccattaccagtgattccagtttcaactacaccaacaggt 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ccagaaattttcggatatgatccattaccagtgattccagtttcaactacaccaacaggt 661

                                                                       
Query: 662 gtagcattaggttcatcaaccaataacaacaacaatgtaaatagtattcaatcattaaat 721
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtagcattaggttcatcaaccaataacaacaacaatgtaaatagtattcaatcattaaat 721

                                                                       
Query: 722 tcattaggtggagcacaagttagaagtgctggtgaaagttattatgagggtatggaagat 781
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tcattaggtggagcacaagttagaagtgctggtgaaagttattatgagggtatggaagat 781

                       
Query: 782 gaagaagcagca 793
           ||||||||||||
Sbjct: 782 gaagaagcagca 793


 Score =  474 bits (239), Expect = e-133
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                        
Query: 889  cttcaaatactacaactacaactacttcgactgcaacaacagtacaaaagaaaccagaaa 948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  cttcaaatactacaactacaactacttcgactgcaacaacagtacaaaagaaaccagaaa 948

                                                                        
Query: 949  agaaatctgatcaattaaatggtttacaacaagtttgtattgtaattggtgccatgtcaa 1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  agaaatctgatcaattaaatggtttacaacaagtttgtattgtaattggtgccatgtcaa 1008

                                                                        
Query: 1009 ctggtgctatgaaaatcgagtataaacacgaagaaatcgctttctcaaattatcctttat 1068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ctggtgctatgaaaatcgagtataaacacgaagaaatcgctttctcaaattatcctttat 1068

                                                                       
Query: 1069 ccgctgctggtgcttgttttaaaattactacagttttttaaagacaatggggtatcttg 1127
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 ccgctgctggtgcttgttttaaaattactacagttttttaaagacaatggggtatcttg 1127


 Score =  147 bits (74), Expect = 3e-35
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctgttggcctactggcaaataatttgatttagtttttaccaccatatttcattaatccat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctgttggcctactggcaaataatttgatttagtttttaccaccatatttcattaatccat 60

                        
Query: 61 ttttattatcaagg 74
          ||||||||||||||
Sbjct: 61 ttttattatcaagg 74


>Contig-U12653-1 (Contig-U12653-1Q) /CSM_Contig/Contig-U12653-1Q.Seq.d
          Length = 1528

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ctgttggcctactggcaaataatt 24
          ||||||||||||||| ||||||||
Sbjct: 2  ctgttggcctactggnaaataatt 25


>Contig-U10453-1 (Contig-U10453-1Q) /CSM_Contig/Contig-U10453-1Q.Seq.d
          Length = 476

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  ctgttggcctactggcaaata 21
          |||||||||||||||||||||
Sbjct: 3  ctgttggcctactggcaaata 23


 Score = 36.2 bits (18), Expect = 0.084
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 892 caaatactacaactacaactac 913
           |||||||| |||||||||||||
Sbjct: 18  caaatacttcaactacaactac 39


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,115
Number of Sequences: 6905
Number of extensions: 23115
Number of successful extensions: 2608
Number of sequences better than 10.0: 682
length of query: 1188
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1172
effective length of database: 5,564,391
effective search space: 6521466252
effective search space used: 6521466252
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09555-1 (Contig-U09555-1Q) /CSM_Contig/Contig-U09555-1Q.Seq.d
         (1188 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...   466   0.0    6
(BJ411472) Dictyostelium discoideum cDNA clone:ddv4g18, 5' e...   587   0.0    3
(BJ429698) Dictyostelium discoideum cDNA clone:ddv4g18, 3' e...   474   0.0    2
(AL440574) T3 end of clone BD0AA013C10 of library BD0AA from...    74   7e-27  4
(AR546535) Sequence 1666 from patent US 6747137.                   78   6e-20  5
(AX489106) Sequence 6406 from Patent WO02053728.                   78   8e-18  5
(AF222909) Candida albicans Ylr186 (YLR186) gene, complete c...    78   1e-17  5
(EY259879) BF01002X1F05.f1 Normalized subtracted keck librar...    68   1e-13  3
(EY259916) BF01004X1C12.f1 Normalized subtracted keck librar...    68   1e-13  3
(CU434501) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    72   5e-12  2
(CU441632) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    72   5e-12  2
(CU429401) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    66   3e-10  2
(CU433346) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    66   3e-10  2
(CU430254) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    66   3e-10  2
(FK144022) XABT176325.b1 Gateway compatible cien cDNA librar...    76   3e-09  1
(FK093911) XABT144713.b1 Gateway compatible cien cDNA librar...    76   3e-09  1
(CX093876) EHAFR27TR E. histolytica Normalized cDNA library ...    58   6e-08  3
(CX086340) EHACI65TR E. histolytica Normalized cDNA library ...    58   7e-08  3
(AZ550169) ENTCU89TR Entamoeba histolytica Sheared DNA Entam...    58   1e-07  3
(CV153462) Julodis7polyt_D02_1_015 Julodis onopordi cDNA Jul...    70   2e-07  1
(BW375400) Ciona intestinalis cDNA, clone:cidg807g03, 3'end,...    70   2e-07  1
(BW374201) Ciona intestinalis cDNA, clone:cidg803p21, 3'end,...    70   2e-07  1
(BW343652) Ciona intestinalis cDNA, clone:ciem825c23, 5'end,...    70   2e-07  1
(BW321471) Ciona intestinalis cDNA, clone:cidg807g03, 5'end,...    70   2e-07  1
(BW320280) Ciona intestinalis cDNA, clone:cidg803p21, 5'end,...    70   2e-07  1
(BW269272) Ciona intestinalis cDNA, clone:cign052m17, 5' end...    70   2e-07  1
(BW249163) Ciona intestinalis cDNA, clone:citb080a16, 5' end...    70   2e-07  1
(BW139437) Ciona intestinalis cDNA, clone:rcign052m17, 3' en...    70   2e-07  1
(BW118480) Ciona intestinalis cDNA, clone:rcitb080a16, 3' en...    70   2e-07  1
(BP005516) Ciona intestinalis cDNA, clone:ciad38b03, 5' end,...    70   2e-07  1
(FK230509) XABT230722.g1 Gateway compatible cien cDNA librar...    70   2e-07  1
(FK225891) XABT227724.b1 Gateway compatible cien cDNA librar...    70   2e-07  1
(FK217147) XABT221664.b1 Gateway compatible cien cDNA librar...    70   2e-07  1
(FK134240) XABT170413.g1 Gateway compatible cien cDNA librar...    70   2e-07  1
(FK134239) XABT170413.b1 Gateway compatible cien cDNA librar...    70   2e-07  1
(FK046880) XABT115570.b2 Gateway compatible cien cDNA librar...    70   2e-07  1
(FF710016) XABT30413.fwd Gateway compatible cien cDNA librar...    70   2e-07  1
(FF710015) XABT30413.rev Gateway compatible cien cDNA librar...    70   2e-07  1
(FF702037) XABT110860.fwd Gateway compatible cien cDNA libra...    70   2e-07  1
(AV866562) Ciona intestinalis cDNA, clone:rcieg47b17, 3' end...    70   2e-07  1
(FK217148) XABT221664.g1 Gateway compatible cien cDNA librar...    68   8e-07  1
(FK046881) XABT115570.g2 Gateway compatible cien cDNA librar...    68   8e-07  1
(FF805426) XABT96330.fwd Gateway compatible cien cDNA librar...    68   8e-07  1
(FF805425) XABT96330.rev Gateway compatible cien cDNA librar...    68   8e-07  1
(FF745631) XABT55825.fwd Gateway compatible cien cDNA librar...    68   8e-07  1
(FF745630) XABT55825.rev Gateway compatible cien cDNA librar...    68   8e-07  1
(FF740706) XABT52529.fwd Gateway compatible cien cDNA librar...    68   8e-07  1
(FF740705) XABT52529.rev Gateway compatible cien cDNA librar...    68   8e-07  1
(AV680073) Ciona intestinalis cDNA clone:rcitb11f23 : 3' end...    64   1e-05  1
(CU441330) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    64   1e-05  1
(FF368458) TN-HCN-384-03-libF-F3_C23 Trichoplusia ni whole l...    64   1e-05  1
(CN776485) taf22f08.y1 Hydra EST Darmstadt I Hydra magnipapi...    60   1e-05  2
(CN769018) taf22f08.x1 Hydra EST Darmstadt I Hydra magnipapi...    60   1e-05  2
(CN630642) taf37f11.y1 Hydra EST Darmstadt I Hydra magnipapi...    60   1e-05  2
(CN631733) taf43e12.y1 Hydra EST Darmstadt I Hydra magnipapi...    60   2e-05  2
(CN630285) taf37f11.x1 Hydra EST Darmstadt I Hydra magnipapi...    60   2e-05  2
(CN631431) taf43e12.x1 Hydra EST Darmstadt I Hydra magnipapi...    60   2e-05  2
(CV660368) tak27a05.y1 Hydra EST UCI 6 Hydra magnipapillata ...    60   2e-05  2
(DC239289) Hodotermopsis sjoestedti cDNA clone: MY0816AHsBod...    40   5e-05  3
(BW390788) Ciona intestinalis cDNA, clone:ciem803k13, 3'end,...    62   5e-05  1
(BW336659) Ciona intestinalis cDNA, clone:ciem803k13, 5'end,...    62   5e-05  1
(BW273953) Ciona intestinalis cDNA, clone:cign067p23, 5' end...    62   5e-05  1
(BW272468) Ciona intestinalis cDNA, clone:cign062m16, 5' end...    62   5e-05  1
(BW268153) Ciona intestinalis cDNA, clone:cign049p21, 5' end...    62   5e-05  1
(BW255746) Ciona intestinalis cDNA, clone:citb081m14, 5' end...    62   5e-05  1
(BW246053) Ciona intestinalis cDNA, clone:citb069j07, 5' end...    62   5e-05  1
(BW243966) Ciona intestinalis cDNA, clone:citb063d07, 5' end...    62   5e-05  1
(BW217754) Ciona intestinalis cDNA, clone:cieg087c03, 5' end...    62   5e-05  1
(BW210218) Ciona intestinalis cDNA, clone:cieg063j04, 5' end...    62   5e-05  1
(BW206547) Ciona intestinalis cDNA, clone:cicl094k07, 5' end...    62   5e-05  1
(BW204601) Ciona intestinalis cDNA, clone:cicl088c19, 5' end...    62   5e-05  1
(BW199208) Ciona intestinalis cDNA, clone:cicl070f20, 5' end...    62   5e-05  1
(BW193570) Ciona intestinalis cDNA, clone:cicl101d15, 5' end...    62   5e-05  1
(BW142785) Ciona intestinalis cDNA, clone:rcign062m16, 3' en...    62   5e-05  1
(BW138311) Ciona intestinalis cDNA, clone:rcign049p21, 3' en...    62   5e-05  1
(BW115081) Ciona intestinalis cDNA, clone:rcitb069j07, 3' en...    62   5e-05  1
(BW081972) Ciona intestinalis cDNA, clone:rcieg087c03, 3' en...    62   5e-05  1
(BW074701) Ciona intestinalis cDNA, clone:rcieg063j04, 3' en...    62   5e-05  1
(BW070970) Ciona intestinalis cDNA, clone:rcicl094k07, 3' en...    62   5e-05  1
(BW066988) Ciona intestinalis cDNA, clone:rcicl101d15, 3' en...    62   5e-05  1
(FF974985) CBWU100217.b1 Yutaka Satou unpublished cDNA libra...    62   5e-05  1
(FF944665) CBWU77226.b1 Yutaka Satou unpublished cDNA librar...    62   5e-05  1
(FF702036) XABT110860.rev Gateway compatible cien cDNA libra...    62   5e-05  1
(AV961056) Ciona intestinalis cDNA, clone:cicl14n12, 5' end,...    62   5e-05  1
(AV955153) Ciona intestinalis cDNA, clone:cicl09g06, 5' end,...    62   5e-05  1
(AV955062) Ciona intestinalis cDNA, clone:cicl09b14, 5' end,...    62   5e-05  1
(AV846193) Ciona intestinalis cDNA, clone:rcicl14n12, 3' end...    62   5e-05  1
(AV844918) Ciona intestinalis cDNA, clone:rcicl09b14, 3' end...    62   5e-05  1
(AZ692316) ENTKT14TF Entamoeba histolytica Sheared DNA Entam...    58   9e-05  2
(BW496417) Ciona intestinalis cDNA, clone:cima041b06, 3'end,...    60   2e-04  1
(BW422583) Ciona intestinalis cDNA, clone:cima843f15, 3'end,...    60   2e-04  1
(BW368048) Ciona intestinalis cDNA, clone:cima843f15, 5'end,...    60   2e-04  1
(BW200883) Ciona intestinalis cDNA, clone:cicl076d09, 5' end...    60   2e-04  1
(BW108951) Ciona intestinalis cDNA, clone:rcicl070f20, 3' en...    60   2e-04  1
(BP523574) Hydra magnipapillata cDNA, clone:hmp_21755.             60   2e-04  1
(FK118497) XABT160933.g1 Gateway compatible cien cDNA librar...    60   2e-04  1
(FK118496) XABT160933.b1 Gateway compatible cien cDNA librar...    60   2e-04  1
(FF903473) CBWU35770.b1 Yutaka Satou unpublished cDNA librar...    60   2e-04  1
(FF875421) CBWU17852.b1 Yutaka Satou unpublished cDNA librar...    60   2e-04  1
(FF804134) XABT95453.fwd Gateway compatible cien cDNA librar...    60   2e-04  1

>(AC117076) Dictyostelium discoideum chromosome 2 map 3323568-3470138
             strain AX4, complete sequence.
          Length = 146570

 Score =  466 bits (235), Expect(6) = 0.0
 Identities = 238/239 (99%)
 Strand = Plus / Minus


Query: 889   cttcaaatactacaactacaactacttcgactgcaacaacagtacaaaagaaaccagaaa 948
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41667 cttcaaatactacaactacaactacttcgactgcaacaacagtacaaaagaaaccagaaa 41608


Query: 949   agaaatctgatcaattaaatggtttacaacaagtttgtattgtaattggtgccatgtcaa 1008
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41607 agaaatctgatcaattaaatggtttacaacaagtttgtattgtaattggtgccatgtcaa 41548


Query: 1009  ctggtgctatgaaaatcgagtataaacacgaagaaatcgctttctcaaattatcctttat 1068
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41547 ctggtgctatgaaaatcgagtataaacacgaagaaatcgctttctcaaattatcctttat 41488


Query: 1069  ccgctgctggtgcttgttttaaaattactacagttttttaaagacaatggggtatcttg 1127
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 41487 ccgctgctggtgcttgttttaaaattactacagtttttgaaagacaatggggtatcttg 41429

 Score =  428 bits (216), Expect(6) = 0.0
 Identities = 218/219 (99%)
 Strand = Plus / Minus


Query: 557   acttcattctntgcaccaaaatgtgtagatttatttgaatttgttccagaaattttcgga 616
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41998 acttcattctctgcaccaaaatgtgtagatttatttgaatttgttccagaaattttcgga 41939


Query: 617   tatgatccattaccagtgattccagtttcaactacaccaacaggtgtagcattaggttca 676
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41938 tatgatccattaccagtgattccagtttcaactacaccaacaggtgtagcattaggttca 41879


Query: 677   tcaaccaataacaacaacaatgtaaatagtattcaatcattaaattcattaggtggagca 736
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41878 tcaaccaataacaacaacaatgtaaatagtattcaatcattaaattcattaggtggagca 41819


Query: 737   caagttagaagtgctggtgaaagttattatgagggtatg 775
             |||||||||||||||||||||||||||||||||||||||
Sbjct: 41818 caagttagaagtgctggtgaaagttattatgagggtatg 41780

 Score =  371 bits (187), Expect(6) = 0.0
 Identities = 187/187 (100%)
 Strand = Plus / Minus


Query: 251   catggtaaagaagcatcagaagctagaccagatattttacatcaatgtttattagcactt 310
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42393 catggtaaagaagcatcagaagctagaccagatattttacatcaatgtttattagcactt 42334


Query: 311   tttgatagtccactcaataaagctggtcttcttcaagttttcataaaaactactaaaaat 370
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42333 tttgatagtccactcaataaagctggtcttcttcaagttttcataaaaactactaaaaat 42274


Query: 371   gttttaattgaagtacatccacaaactagaattccaagaacttttaatagatttgctggt 430
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42273 gttttaattgaagtacatccacaaactagaattccaagaacttttaatagatttgctggt 42214


Query: 431   ttaatgg 437
             |||||||
Sbjct: 42213 ttaatgg 42207

 Score =  242 bits (122), Expect(6) = 0.0
 Identities = 122/122 (100%)
 Strand = Plus / Minus


Query: 122   gcaagcacaacattaaaagatacaaagaaattaattattgttttggaacatgcaacatta 181
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42522 gcaagcacaacattaaaagatacaaagaaattaattattgttttggaacatgcaacatta 42463


Query: 182   gatacagttaaagtcaaagaaagctttcaattattaaattgtgatgatcatgctgacatt 241
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42462 gatacagttaaagtcaaagaaagctttcaattattaaattgtgatgatcatgctgacatt 42403


Query: 242   tt 243
             ||
Sbjct: 42402 tt 42401

 Score =  218 bits (110), Expect(6) = 0.0
 Identities = 110/110 (100%)
 Strand = Plus / Minus


Query: 437   gttcaattattaaagaaattaagcattagagcaacaaatggaccagataaattatttaaa 496
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42112 gttcaattattaaagaaattaagcattagagcaacaaatggaccagataaattatttaaa 42053


Query: 497   gttattaagaatccaattacagatcatttagcaccaggaactaaaatata 546
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42052 gttattaagaatccaattacagatcatttagcaccaggaactaaaatata 42003

 Score =  117 bits (59), Expect(6) = 0.0
 Identities = 59/59 (100%)
 Strand = Plus / Minus


Query: 16    caaataatttgatttagtttttaccaccatatttcattaatccatttttattatcaagg 74
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42628 caaataatttgatttagtttttaccaccatatttcattaatccatttttattatcaagg 42570

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,229,226,599
Number of extensions: 78759778
Number of successful extensions: 6410236
Number of sequences better than 10.0: 268
Length of query: 1188
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1164
Effective length of database: 97,308,875,965
Effective search space: 113267531623260
Effective search space used: 113267531623260
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09555-1 (Contig-U09555-1Q) /CSM_Contig/Contig-U09555-1Q.Seq.d
         (1188 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_25(AC117076|pid:none) Dictyostelium discoideum chromoso...   394   e-108
AK298745_1(AK298745|pid:none) Homo sapiens cDNA FLJ60792 complet...   188   4e-46
(Q92979) RecName: Full=Probable ribosome biogenesis protein NEP1...   188   4e-46
BC095789_1(BC095789|pid:none) Danio rerio hypothetical protein L...   184   5e-45
BC115095_1(BC115095|pid:none) Danio rerio zgc:136360, mRNA (cDNA...   184   5e-45
(Q9W4J5) RecName: Full=Probable ribosome biogenesis protein NEP1...   182   2e-44
CU928170_79(CU928170|pid:none) Kluyveromyces thermotolerans stra...   175   3e-42
AE016819_920(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...   173   9e-42
AM270252_6(AM270252|pid:none) Aspergillus niger contig An11c0350...   173   9e-42
CP000496_290(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   172   2e-41
CR382137_592(CR382137|pid:none) Debaryomyces hansenii strain CBS...   172   2e-41
(Q10107) RecName: Full=Multicopy suppressor of ras1; AltName: Fu...   172   3e-41
FM992688_1049(FM992688|pid:none) Candida dubliniensis CD36 chrom...   169   1e-40
EF082860_1(EF082860|pid:none) Picea sitchensis clone WS02811_M08...   169   2e-40
CP001574_546(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   167   5e-40
CP000581_94(CP000581|pid:none) Ostreococcus lucimarinus CCE9901 ...   166   2e-39
BX088700_15(BX088700|pid:none) DNA centromeric region sequence f...   164   6e-39
(Q9XX15) RecName: Full=Probable ribosome biogenesis protein nep-...   159   1e-37
AJ617302_3(AJ617302|pid:none) Kluyveromyces delphensis bud5 gene...   156   2e-36
(Q96UP2) RecName: Full=Nucleolar essential protein 1; AltName: F...   154   4e-36
AK101872_1(AK101872|pid:none) Oryza sativa Japonica Group cDNA c...   149   1e-34
DQ146931_1(DQ146931|pid:none) Sclerotinia sclerotiorum hypotheti...   148   4e-34
AY087984_1(AY087984|pid:none) Arabidopsis thaliana clone 40153 m...   146   1e-33
AK227852_1(AK227852|pid:none) Arabidopsis thaliana mRNA for hypo...   146   1e-33
AC161107_32(AC161107|pid:none) Medicago truncatula clone mth2-19...   145   2e-33
BT052982_1(BT052982|pid:none) Medicago truncatula clone MTYFL_FM...   142   3e-32
AK298207_1(AK298207|pid:none) Homo sapiens cDNA FLJ56921 complet...   137   1e-30
CT005255_146(CT005255|pid:none) Leishmania major strain Friedlin...   129   2e-28
AY812044_1(AY812044|pid:none) Schistosoma japonicum SJCHGC04905 ...   129   2e-28
AM502234_146(AM502234|pid:none) Leishmania infantum chromosome 16.    129   2e-28
U47924_20(U47924|pid:none) Human chromosome 12p13 sequence, comp...   124   5e-27
AM910987_96(AM910987|pid:none) Plasmodium knowlesi strain H chro...    94   7e-18
AX885859_1(AX885859|pid:none) Sequence 1722 from Patent EP1033401.     88   7e-16
(A3DNG9) RecName: Full=Probable ribosome biogenesis protein NEP1...    73   2e-11
CP001140_1114(CP001140|pid:none) Desulfurococcus kamchatkensis 1...    70   1e-10
(B6YTM6) RecName: Full=Probable ribosome biogenesis protein NEP1...    70   1e-10
(O50087) RecName: Full=Probable ribosome biogenesis protein NEP1...    68   6e-10
CP000079_232(CP000079|pid:none) Leishmania major strain Friedlin...    67   2e-09
(O29524) RecName: Full=Probable ribosome biogenesis protein NEP1...    65   4e-09
(A3MWJ1) RecName: Full=Probable ribosome biogenesis protein NEP1...    64   1e-08
(Q57977) RecName: Full=Probable ribosome biogenesis protein NEP1...    64   1e-08
AL391737_45(AL391737|pid:none) chromosome I of strain GB-M1 of E...    64   1e-08
(A0B5L3) RecName: Full=Probable ribosome biogenesis protein NEP1...    63   2e-08
AC007865_11(AC007865|pid:none) Trypanosoma brucei chromosome 2 c...    62   3e-08
CP000505_553(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...    62   4e-08
(B1YD95) RecName: Full=Probable ribosome biogenesis protein NEP1...    62   5e-08
CP001404_43(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51, ...    61   9e-08
AE006641_2046(AE006641|pid:none) Sulfolobus solfataricus P2, com...    59   3e-07
(Q9YES9) RecName: Full=Probable ribosome biogenesis protein NEP1...    59   4e-07
CP000852_612(CP000852|pid:none) Caldivirga maquilingensis IC-167...    56   2e-06
CP000816_915(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    56   2e-06
CP000968_1309(CP000968|pid:none) Candidatus Korarchaeum cryptofi...    55   6e-06
CP000816_789(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    54   8e-06
EU686635_22(EU686635|pid:none) Uncultured marine crenarchaeote A...    54   1e-05
(Q9HJ48) RecName: Full=Probable ribosome biogenesis protein NEP1...    51   9e-05
AE009439_202(AE009439|pid:none) Methanopyrus kandleri AV19, comp...    50   2e-04
CP000493_310(CP000493|pid:none) Hyperthermus butylicus DSM 5456,...    49   3e-04
(Q96YP4) RecName: Full=Probable ribosome biogenesis protein NEP1...    46   0.003
CR380951_5(CR380951|pid:none) Candida glabrata strain CBS138 chr...    44   0.009
CR380948_1(CR380948|pid:none) Candida glabrata strain CBS138 chr...    44   0.009
CP000682_745(CP000682|pid:none) Metallosphaera sedula DSM 5348, ...    44   0.011

>AC117076_25(AC117076|pid:none) Dictyostelium discoideum chromosome
           2 map 3323568-3470138 strain AX4, complete sequence.
          Length = 338

 Score =  394 bits (1012), Expect = e-108
 Identities = 203/225 (90%), Positives = 203/225 (90%)
 Frame = +2

Query: 107 MNFNKASTTLKDTKKLIIVLEHATLDTVKVKESFQLLNCDDHADILKKHGKEASEARPDI 286
           MNFNKASTTLKDTKKLIIVLEHATLDTVKVKESFQLLNCDDHADILKKHGKEASEARPDI
Sbjct: 1   MNFNKASTTLKDTKKLIIVLEHATLDTVKVKESFQLLNCDDHADILKKHGKEASEARPDI 60

Query: 287 LHQCLLALFDSPLNKAGLLQVFIKTTKNVLIEVHPQTRIPRTFNRFAGLMVQLLKKLSIR 466
           LHQCLLALFDSPLNKAGLLQVFIKTTKNVLIEVHPQTRIPRTFNRFAGLMVQLLKKLSIR
Sbjct: 61  LHQCLLALFDSPLNKAGLLQVFIKTTKNVLIEVHPQTRIPRTFNRFAGLMVQLLKKLSIR 120

Query: 467 ATNGPDKLFKVIKNPITDHLAPGTKIXXXXTSFXAPKCVDLFEFVPEIFGYDPLPVIPVS 646
           ATNGPDKLFKVIKNPITDHLAPGTKI    TSF APKCVDLFEFVPEIFGYDPLPVIPVS
Sbjct: 121 ATNGPDKLFKVIKNPITDHLAPGTKI--YATSFSAPKCVDLFEFVPEIFGYDPLPVIPVS 178

Query: 647 TTPTGVALGXXXXXXXXXXXXXXXXXLGGAQVRSAGESYYEGMED 781
           TTPTGVALG                 LGGAQVRSAGESYYEGMED
Sbjct: 179 TTPTGVALGSSTNNNNNVNSIQSLNSLGGAQVRSAGESYYEGMED 223

 Score =  132 bits (333), Expect = 2e-29
 Identities = 65/66 (98%), Positives = 65/66 (98%)
 Frame = +3

Query: 930  VQKKPEKKSDQLNGLQQVCIVIGAMSTGAMKIEYKHEEIAFSNYPLSAAGACFKITTVF* 1109
            VQKKPEKKSDQLNGLQQVCIVIGAMSTGAMKIEYKHEEIAFSNYPLSAAGACFKITTVF
Sbjct: 273  VQKKPEKKSDQLNGLQQVCIVIGAMSTGAMKIEYKHEEIAFSNYPLSAAGACFKITTVFE 332

Query: 1110 RQWGIL 1127
            RQWGIL
Sbjct: 333  RQWGIL 338

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,297,116,684
Number of extensions: 20254031
Number of successful extensions: 40082
Number of sequences better than 10.0: 61
Number of HSP's gapped: 40046
Number of HSP's successfully gapped: 86
Length of query: 396
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 265
Effective length of database: 621,205,444
Effective search space: 164619442660
Effective search space used: 164619442660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.66  gvh: 0.29  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U09555-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0