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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09547-1
Contig ID Contig-U09547-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09547-1 (Contig-U09547-1Q) /CSM_Contig/Contig-U09547-1Q.Seq.d
AAAAATAAATACACACAAACTATCTGGTGGTAATAATAATAATAATTAAA
AAAAAATGGCAAGTAATAATAACAATAATAATAATAATACTAGTTATGGA
GAAATATTATTTTGGAAAGTTTTTAAAAACAATTATATAGTTAGTGTGAT
ATTAAACCAAATTCATCAAACTGAATGGGTAGACTATAAACTTCCATTAG
ATTATAATATTAATAATCGATGCAAATTTGAAGATATTCATTCACTTTTT
TTAATGATAAGGAATCAGTTATTCTCATTAATTAAAAATAAAATCAAACA
TGGTGACTACATTGAAATTGATAAAGAGTCAATAAGATATTTATTTAAAA
AATTGACATTTAGAAAACAACAACATCCACAACTAAAAAACAAAGAACAA
TATTTAGAAGTCATTAGATTATTAATGACCCATAGAAGAGATGAATTTGA
AATCTGTGATCTCACTAATCTTGCCATAGAGTTGGACAGTCCGGAAGTAT
TAAGATTACTAGTTCACGAGCC----------AATCCACTCAACATAAAG
AATCATGGTATTGATTTAATTTCTGCAAAAGTAAAGAAGTTTTCATTCCG
TTCAGCTCATAATAATGCTAATCAAACAAGAATTCTTCAATATTTAATCG
ATAATCCATCATTATATACAAAGCCAACTCAAGAAGAACAAAAAAGAAAG
AAATTAAAACCATCAAATTCAAATGAAGAAGATGAAATAGCAACAACAAA
AAGTAAAAAAAATGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAT
TGAAAAAAATTGGGTATGAAAACTTTATAACTACTTATAAAGTAAGAATG
ATGAATAAAATGATGGATTTAGGAGTGGCTTATATTTCAAAACCAAATGA
TAGAAATGAATTTGATATTAGAGATTGGTTAGTAATAGATAGACGTTATG
AAAGATTATTGGTTACATTAAGATTTTATTTTGAACATATTTTAGATAAC
CGTACAAAAACAAATAGAGATAAATTAATTGAAGAGAAAGTAAATTCAAT
TCGTACAAATAATCAAGTTGGATTCGATAAATTAAAAGAGTGAGAAAATT
ATTGCAATNAATTTAACCAACAAATTTCTA
Gap gap included
Contig length 1120
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 348436
End point 347311
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09547
List of clone(s) 

est1=VFB304F,1,523
est2=VFB304Z,524,1122
Translated Amino Acid sequence 
kinthklsggnnnnn*KKMASNNNNNNNNTSYGEILFWKVFKNNYIVSVILNQIHQTEWV
DYKLPLDYNINNRCKFEDIHSLFLMIRNQLFSLIKNKIKHGDYIEIDKESIRYLFKKLTF
RKQQHPQLKNKEQYLEVIRLLMTHRRDEFEICDLTNLAIELDSPEVLRLLVHE---

---NPLNIKNHGIDLISAKVKKFSFRSAHNNANQTRILQYLIDNPSLYTKPTQEEQKRKK
LKPSNSNEEDEIATTKSKKNEEEEEEEEEEEELKKIGYENFITTYKVRMMNKMMDLGVAY
ISKPNDRNEFDIRDWLVIDRRYERLLVTLRFYFEHILDNRTKTNRDKLIEEKVNSIRTNN
QVGFDKLKE*enycnxfnqqis
Translated Amino Acid sequence (All Frames) 
Frame A:
knkytqtiww*****lkkngk***q****y*lwrniilesf*kqlys*cdikpnssn*mg
rl*tsirl*y**smqi*rysftffndkesvilin*k*nqtw*lh*n**rvnkifi*kidi
*ktttsttkkqrtifrsh*iindp*kr*i*nl*sh*schrvgqsgsikitssra---

---NPLNIKNHGIDLISAKVKKFSFRSAHNNANQTRILQYLIDNPSLYTKPTQEEQKRKK
LKPSNSNEEDEIATTKSKKNEEEEEEEEEEEELKKIGYENFITTYKVRMMNKMMDLGVAY
ISKPNDRNEFDIRDWLVIDRRYERLLVTLRFYFEHILDNRTKTNRDKLIEEKVNSIRTNN
QVGFDKLKE*enycnxfnqqis

Frame B:
kinthklsggnnnnn*KKMASNNNNNNNNTSYGEILFWKVFKNNYIVSVILNQIHQTEWV
DYKLPLDYNINNRCKFEDIHSLFLMIRNQLFSLIKNKIKHGDYIEIDKESIRYLFKKLTF
RKQQHPQLKNKEQYLEVIRLLMTHRRDEFEICDLTNLAIELDSPEVLRLLVHE---

---ihst*rimvli*flqk*rsfhsvqliimlikqeffni*siihhyiqsqlkknkkern
*nhqiqmkkmk*qqqkvkkmrkkkkkkkkkrn*kklgmktl*llik*e**ik*wi*ewli
fqnqmiemnlileig***idvmkdywlh*dfilnif*itvqkqiein*lkrk*iqfvqii
kldsin*ksekiiaxnltnkfl

Frame C:
k*ihtnylvviiiiikkkwqviitiiiiilvmekyyfgkflktii*lv*y*tkfiklng*
tinfh*iiiliidanlkifihff***gisysh*lkiksnmvttlkliksq*diylkn*hl
ennnihn*ktknni*ksldy**pieemnlksvislilp*swtvrky*dy*fts---

---stqhkeswy*fnfckskevfipfss**c*snknssifnr*siiiykansrrtkkkei
ktikfk*rr*nsnnkk*kk*grrrrrrrrrgieknwv*klynyl*sknde*ndgfrsgly
fktk**k*i*y*rlvsnr*tl*kiigyikilf*tyfr*pyknk*r*in*reskfnsyk*s
swir*ikrvrkllqxi*ptnf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09547-1 (Contig-U09547-1Q)
/CSM_Contig/Contig-U09547-1Q.Seq.d
         (1130 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09547-1 (Contig-U09547-1Q) /CSM_Contig/Conti...  1102  0.0
Contig-U11895-1 (Contig-U11895-1Q) /CSM_Contig/Conti...    58  2e-08
Contig-U10129-1 (Contig-U10129-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U13250-1 (Contig-U13250-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12064-1 (Contig-U12064-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U08409-1 (Contig-U08409-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14452-1 (Contig-U14452-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U12424-1 (Contig-U12424-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U12163-1 (Contig-U12163-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U01495-1 (Contig-U01495-1Q) /CSM_Contig/Conti...    38  0.020

>Contig-U09547-1 (Contig-U09547-1Q) /CSM_Contig/Contig-U09547-1Q.Seq.d
          Length = 1130

 Score = 1102 bits (556), Expect = 0.0
 Identities = 600/607 (98%)
 Strand = Plus / Plus

                                                                       
Query: 90  ctagttatggagaaatattattttggaaagtttttaaaaacaattatatagttagtgtga 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  ctagttatggagaaatattattttggaaagtttttaaaaacaattatatagttagtgtga 149

                                                                       
Query: 150 tattaaaccaaattcatcaaactgaatgggtagactataaacttccattagattataata 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tattaaaccaaattcatcaaactgaatgggtagactataaacttccattagattataata 209

                                                                       
Query: 210 ttaataatcgatgcaaatttgaagatattcattcacnnnnnnnaatgataaggaatcagt 269
           ||||||||||||||||||||||||||||||||||||       |||||||||||||||||
Sbjct: 210 ttaataatcgatgcaaatttgaagatattcattcactttttttaatgataaggaatcagt 269

                                                                       
Query: 270 tattctcattaattaaaaataaaatcaaacatggtgactacattgaaattgataaagagt 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tattctcattaattaaaaataaaatcaaacatggtgactacattgaaattgataaagagt 329

                                                                       
Query: 330 caataagatatttatttaaaaaattgacatttagaaaacaacaacatccacaactaaaaa 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caataagatatttatttaaaaaattgacatttagaaaacaacaacatccacaactaaaaa 389

                                                                       
Query: 390 acaaagaacaatatttagaagtcattagattattaatgacccatagaagagatgaatttg 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 acaaagaacaatatttagaagtcattagattattaatgacccatagaagagatgaatttg 449

                                                                       
Query: 450 aaatctgtgatctcactaatcttgccatagagttggacagtccggaagtattaagattac 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaatctgtgatctcactaatcttgccatagagttggacagtccggaagtattaagattac 509

                                                                       
Query: 510 tagttcacgagccnnnnnnnnnnaatccactcaacataaagaatcatggtattgatttaa 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tagttcacgagccnnnnnnnnnnaatccactcaacataaagaatcatggtattgatttaa 569

                                                                       
Query: 570 tttctgcaaaagtaaagaagttttcattccgttcagctcataataatgctaatcaaacaa 629
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tttctgcaaaagtaaagaagttttcattccgttcagctcataataatgctaatcaaacaa 629

                                                                       
Query: 630 gaattcttcaatatttaatcgataatccatcattatatacaaagccaactcaagaagaac 689
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaattcttcaatatttaatcgataatccatcattatatacaaagccaactcaagaagaac 689

                  
Query: 690 aaaaaag 696
           |||||||
Sbjct: 690 aaaaaag 696


 Score =  630 bits (318), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Plus

                                                                        
Query: 810  ttgggtatgaaaactttataactacttataaagtaagaatgatgaataaaatgatggatt 869
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  ttgggtatgaaaactttataactacttataaagtaagaatgatgaataaaatgatggatt 869

                                                                        
Query: 870  taggagtggcttatatttcaaaaccaaatgatagaaatgaatttgatattagagattggt 929
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  taggagtggcttatatttcaaaaccaaatgatagaaatgaatttgatattagagattggt 929

                                                                        
Query: 930  tagtaatagatagacgttatgaaagattattggttacattaagattttattttgaacata 989
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  tagtaatagatagacgttatgaaagattattggttacattaagattttattttgaacata 989

                                                                        
Query: 990  ttttagataaccgtacaaaaacaaatagagataaattaattgaagagaaagtaaattcaa 1049
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  ttttagataaccgtacaaaaacaaatagagataaattaattgaagagaaagtaaattcaa 1049

                                                                        
Query: 1050 ttcgtacaaataatcaagttggattcgataaattaaaagagtgagaaaattattgcaatn 1109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 ttcgtacaaataatcaagttggattcgataaattaaaagagtgagaaaattattgcaatn 1109

                                 
Query: 1110 aatttaaccaacaaatttcta 1130
            |||||||||||||||||||||
Sbjct: 1110 aatttaaccaacaaatttcta 1130


 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  aaaaataaatacacacaaactatctggtggta 32
          ||||||||||||||||||||||||||||||||
Sbjct: 1  aaaaataaatacacacaaactatctggtggta 32


>Contig-U11895-1 (Contig-U11895-1Q) /CSM_Contig/Contig-U11895-1Q.Seq.d
          Length = 1452

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 101 gaaatattattttggaaagtttttaaaaa 129
           |||||||||||||||||||||||||||||
Sbjct: 42  gaaatattattttggaaagtttttaaaaa 70


>Contig-U10129-1 (Contig-U10129-1Q) /CSM_Contig/Contig-U10129-1Q.Seq.d
          Length = 1026

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 269 ttattctcattaattaaaaataa 291
           |||||||||||||||||||||||
Sbjct: 380 ttattctcattaattaaaaataa 358


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,401
Number of Sequences: 6905
Number of extensions: 22401
Number of successful extensions: 2648
Number of sequences better than 10.0: 330
length of query: 1130
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1114
effective length of database: 5,564,391
effective search space: 6198731574
effective search space used: 6198731574
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09547-1 (Contig-U09547-1Q) /CSM_Contig/Contig-U09547-1Q.Seq.d
         (1130 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ429321) Dictyostelium discoideum cDNA clone:ddv3h01, 3' e...   630   0.0    2
(BJ411123) Dictyostelium discoideum cDNA clone:ddv3h01, 5' e...   309   0.0    4
(AC115683) Dictyostelium discoideum chromosome 2 map complem...    64   6e-26  6
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442...    60   3e-23  6
(AC115579) Dictyostelium discoideum chromosome 2 map 6097680...    60   4e-23  5
(AC116918) Dictyostelium discoideum chromosome 2 map 6143698...    60   7e-22  3
(AC116985) Dictyostelium discoideum chromosome 2 map 6135249...    60   9e-16  5
(AU284712) Dictyostelium discoideum gamete cDNA clone:FC-BI0...    54   4e-10  2
(BJ369779) Dictyostelium discoideum cDNA clone:ddc51p16, 5' ...    58   8e-04  1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    56   0.003  1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    46   0.011  7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    52   0.047  1
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    50   0.085  3
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    50   0.18   1
(AC078799) Homo sapiens 3 BAC RP11-499P15 (Roswell Park Canc...    50   0.18   1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    50   0.18   1
(CU695200) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.30   5
(CT497172) A BAC library has been constructed from cultivar ...    32   0.48   3
(DY448856) HSAA-aaa21g04.g1 UCI-11 Hydra vulgaris cDNA 5', m...    34   0.57   3
(AC115581) Dictyostelium discoideum chromosome 2 map complem...    42   0.61   6
(CT548592) A BAC library has been constructed from cultivar ...    32   0.63   3
(CU915765) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.72   5
(AP002492) Homo sapiens genomic DNA, chromosome 11q clone:CT...    48   0.73   1
(AP010151) Lotus japonicus genomic DNA, clone: LjT38L02, TM1...    48   0.73   1
(AC170014) Bos taurus clone CH240-219M16, WORKING DRAFT SEQU...    48   0.73   1
(AC021168) Homo sapiens chromosome 11 clone RP11-625M1, WORK...    48   0.73   1
(CU825722) A BAC library has been constructed from PN40024 g...    36   0.80   3
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    38   1.1    6
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    40   1.1    10
(AM477432) Vitis vinifera, whole genome shotgun sequence, co...    38   1.2    5
(AC007567) Homo sapiens BAC clone CTB-36G2 from 7, complete ...    36   1.4    7
(AC163927) Bos taurus clone CH240-130L5, WORKING DRAFT SEQUE...    34   1.5    2
(AC017105) Homo sapiens chromosome 5 clone RP11-565F4, WORKI...    34   1.5    2
(AC093301) Homo sapiens chromosome 5 clone RP11-565F4, compl...    34   1.5    2
(BX569794) Zebrafish DNA sequence from clone DKEYP-15B2 in l...    36   1.5    2
(AL928668) Zebrafish DNA sequence from clone CH211-208M1 in ...    38   1.5    7
(AC216676) Populus trichocarpa clone POP046-B08, complete se...    34   1.5    2
(DX486412) Cpl28165 Papaya Genomic DNA BAC Library Carica pa...    36   1.7    2
(CU694903) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    2
(ER977907) MUGQ_CH252P299F16T7_CP475_060 CHORI-252 Vervet Mo...    34   2.0    2
(EK063542) 1092960100945 Global-Ocean-Sampling_GS-31-01-01-1...    44   2.3    2
(ER587660) 1093016160598 Global-Ocean-Sampling_GS-36-01-01-2...    40   2.5    2
(AM476956) Vitis vinifera contig VV78X034027.6, whole genome...    36   2.6    3
(BV388200) S244P6223FE12.T0 AlaskaGrayWolf Canis lupus STS g...    46   2.9    1
(AC212928) Populus trichocarpa clone POP043-P14, complete se...    46   2.9    1
(DJ358595) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    46   2.9    1
(DJ358571) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    46   2.9    1
(CS114314) Sequence 1072 from Patent WO2005054517.                 46   2.9    1
(CS114290) Sequence 1048 from Patent WO2005054517.                 46   2.9    1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    46   2.9    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    46   2.9    1
(AC137318) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    46   2.9    1
(AC127800) Rattus norvegicus clone CH230-30C5, *** SEQUENCIN...    46   2.9    1
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    46   2.9    1
(AC091335) Rattus norvegicus clone CH230-1C5, *** SEQUENCING...    46   2.9    1
(AC165035) Bos taurus clone CH240-158J2, WORKING DRAFT SEQUE...    46   2.9    1
(AZ523679) 222PbC09 Pb MBN #21 Plasmodium berghei genomic 3'...    46   2.9    1
(EK141901) 1095454132425 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.9    1
(EJ271424) 1095353018147 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.9    1
(CL595100) OB__Ba0056C21.r OB__Ba Oryza brachyantha genomic ...    46   2.9    1
(CL567028) OB__Ba0037I19.f OB__Ba Oryza brachyantha genomic ...    46   2.9    1
(CC221847) CH261-48D14_RM1.1 CH261 Gallus gallus genomic clo...    46   2.9    1
(ES520802) BIG_AF_26956 Brine Shrimp embryos, 15 hours after...    46   2.9    1
(AU263630) Dictyostelium discoideum vegetative cDNA clone:VS...    46   2.9    1
(AU263629) Dictyostelium discoideum vegetative cDNA clone:VS...    46   2.9    1
(AC212843) Populus trichocarpa clone POP014-M10, complete se...    42   2.9    4
(EI930869) VUH2-86A6TV VUUBBa (VUH2) Vigna unguiculata genom...    38   2.9    2
(BX321891) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   3.2    7
(AE017308) Mycoplasma mobile 163K complete genome.                 34   3.2    18
(CD123106) ME1-0075T-M232-H10-U.G ME1-0075 Schistosoma manso...    34   3.5    2
(BX901914) Zebrafish DNA sequence from clone DKEY-27F18 in l...    42   3.7    5
(BI542461) EST02 Schizosaccharomyces pombe differential disp...    40   3.8    2
(BX897719) Zebrafish DNA sequence from clone CH211-199I23 in...    38   3.8    5
(CR936976) Zebrafish DNA sequence from clone CH211-286N19 in...    40   4.2    5
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   4.6    20
(BX004862) Zebrafish DNA sequence from clone DKEY-200M9 in l...    42   4.9    6
(AC149698) Bos taurus clone CH240-407N7, WORKING DRAFT SEQUE...    38   5.2    5
(AC103503) Rattus norvegicus clone CH230-95I24, *** SEQUENCI...    34   5.3    2
(AC132527) Rattus norvegicus clone CH230-182P17, WORKING DRA...    34   5.3    2
(AC212169) Pongo abelii chromosome 15 clone CH276-209B15, WO...    32   5.3    2
(AC007323) Genomic sequence for Arabidopsis thaliana BAC T25...    36   6.5    5
(AY835431) Pseudendoclonium akinetum chloroplast, complete g...    36   6.7    4
(CR388048) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   7.1    6
(EJ854952) 1093017913185 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.2    2
(EJ673606) 1092955068291 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.2    2
(CW942639) TcB24.1_H06_T7 Tribolium BAC library Tribolium ca...    32   7.2    2
(EJ688059) 1092955209379 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.2    2
(EJ658870) 1092955016517 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.2    2
(EJ730653) 1092960110729 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.3    2
(EJ843239) 1093017843337 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.3    2
(EJ231138) 1092402605315 Global-Ocean-Sampling_GS-27-01-01-1...    32   7.3    2
(AM649699) Entamoeba moshkovskii FIC GSS, clone mosh069g11.p1k.    34   7.3    2
(AM471693) Vitis vinifera contig VV78X028385.7, whole genome...    40   7.4    2
(AM436000) Vitis vinifera contig VV78X106867.50, whole genom...    34   7.8    5
(CU607077) Zebrafish DNA sequence from clone CH1073-435J7 in...    38   8.4    3
(BZ390234) EINCP39TR EI_10_12_KB Entamoeba invadens genomic ...    38   8.5    2
(BD452995) Diagnosis of Diseases Associated with tumor suppr...    38   8.7    4
(AX251474) Sequence 442 from Patent WO0168912.                     38   8.7    4
(CU407091) Pig DNA sequence from clone CH242-517F9 on chromo...    38   8.7    8
(FH347025) CHO_OF4647xa16f1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   8.9    2

>(BJ429321) Dictyostelium discoideum cDNA clone:ddv3h01, 3' end,
            single read.
          Length = 599

 Score =  630 bits (318), Expect(2) = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Minus


Query: 810  ttgggtatgaaaactttataactacttataaagtaagaatgatgaataaaatgatggatt 869
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322  ttgggtatgaaaactttataactacttataaagtaagaatgatgaataaaatgatggatt 263


Query: 870  taggagtggcttatatttcaaaaccaaatgatagaaatgaatttgatattagagattggt 929
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262  taggagtggcttatatttcaaaaccaaatgatagaaatgaatttgatattagagattggt 203


Query: 930  tagtaatagatagacgttatgaaagattattggttacattaagattttattttgaacata 989
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202  tagtaatagatagacgttatgaaagattattggttacattaagattttattttgaacata 143


Query: 990  ttttagataaccgtacaaaaacaaatagagataaattaattgaagagaaagtaaattcaa 1049
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142  ttttagataaccgtacaaaaacaaatagagataaattaattgaagagaaagtaaattcaa 83


Query: 1050 ttcgtacaaataatcaagttggattcgataaattaaaagagtgagaaaattattgcaatn 1109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82   ttcgtacaaataatcaagttggattcgataaattaaaagagtgagaaaattattgcaatn 23


Query: 1110 aatttaaccaacaaatttcta 1130
            |||||||||||||||||||||
Sbjct: 22   aatttaaccaacaaatttcta 2

 Score =  270 bits (136), Expect(2) = 0.0
 Identities = 136/136 (100%)
 Strand = Plus / Minus


Query: 533 aatccactcaacataaagaatcatggtattgatttaatttctgcaaaagtaaagaagttt 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aatccactcaacataaagaatcatggtattgatttaatttctgcaaaagtaaagaagttt 540


Query: 593 tcattccgttcagctcataataatgctaatcaaacaagaattcttcaatatttaatcgat 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcattccgttcagctcataataatgctaatcaaacaagaattcttcaatatttaatcgat 480


Query: 653 aatccatcattatata 668
           ||||||||||||||||
Sbjct: 479 aatccatcattatata 464

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,187,645,090
Number of extensions: 79187213
Number of successful extensions: 6853658
Number of sequences better than 10.0: 111
Length of query: 1130
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1106
Effective length of database: 97,308,875,965
Effective search space: 107623616817290
Effective search space used: 107623616817290
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09547-1 (Contig-U09547-1Q) /CSM_Contig/Contig-U09547-1Q.Seq.d
         (1130 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116922_7(AC116922|pid:none) Dictyostelium discoideum chromosom...   208   2e-52
AC115579_3(AC115579|pid:none) Dictyostelium discoideum chromosom...   196   2e-48
AC115683_2(AC115683|pid:none) Dictyostelium discoideum chromosom...   187   4e-46
AC115683_4(AC115683|pid:none) Dictyostelium discoideum chromosom...   146   1e-33
AC116922_10(AC116922|pid:none) Dictyostelium discoideum chromoso...   135   3e-30
AC116922_12(AC116922|pid:none) Dictyostelium discoideum chromoso...   128   4e-28
AC116924_12(AC116924|pid:none) Dictyostelium discoideum chromoso...   107   1e-21
AC116977_3(AC116977|pid:none) Dictyostelium discoideum chromosom...   105   3e-21
AC117070_28(AC117070|pid:none) Dictyostelium discoideum chromoso...    89   3e-16
AC116956_64(AC116956|pid:none) Dictyostelium discoideum chromoso...    77   1e-12
AF310885_1(AF310885|pid:none) Dictyostelium discoideum Rac1C (ra...    74   7e-12
AC116957_64(AC116957|pid:none) Dictyostelium discoideum chromoso...    71   6e-11
AC116985_1(AC116985|pid:none) Dictyostelium discoideum chromosom...    71   8e-11
AC117176_50(AC117176|pid:none) Dictyostelium discoideum chromoso...    70   1e-10
AC116986_26(AC116986|pid:none) Dictyostelium discoideum chromoso...    65   4e-09
AC115683_6(AC115683|pid:none) Dictyostelium discoideum chromosom...    54   8e-06
AC116984_187(AC116984|pid:none) Dictyostelium discoideum chromos...    47   0.001
AC116551_1(AC116551|pid:none) Dictyostelium discoideum chromosom...    47   0.001
AC116984_148(AC116984|pid:none) Dictyostelium discoideum chromos...    42   0.030
AC116982_3(AC116982|pid:none) Dictyostelium discoideum chromosom...    42   0.052
AC116963_31(AC116963|pid:none) Dictyostelium discoideum chromoso...    41   0.088
AC114263_13(AC114263|pid:none) Dictyostelium discoideum chromoso...    41   0.088
AC114261_5(AC114261|pid:none) Dictyostelium discoideum chromosom...    39   0.33
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    38   0.75
AC115606_7(AC115606|pid:none) Dictyostelium discoideum chromosom...    37   0.97
AY501887_1(AY501887|pid:none) Plasmodium vivax strain Salvador I...    37   1.3
CU928160_4339(CU928160|pid:none) Escherichia coli IAI1 chromosom...    37   1.3
CR940348_217(CR940348|pid:none) Theileria annulata strain Ankara...    37   1.3
CP000553_286(CP000553|pid:none) Prochlorococcus marinus str. NAT...    36   2.2
AC115581_4(AC115581|pid:none) Dictyostelium discoideum chromosom...    36   2.2
CP001102_460(CP001102|pid:none) Candidatus Amoebophilus asiaticu...    36   2.2
AL844508_163(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.8
BC067320_1(BC067320|pid:none) Xenopus tropicalis hypothetical pr...    35   3.7
AC022472_11(AC022472|pid:none) Sequence of BAC T20H2 from Arabid...    35   4.8
AE014188_445(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.8
(Q5UPQ0) RecName: Full=Putative F-box protein R757;  &AY653733_7...    35   6.3
AY501886_1(AY501886|pid:none) Plasmodium vivax strain Thailand-N...    34   8.2
AB189475_1(AB189475|pid:none) Staphylococcus warneri lipWY, SWM0...    34   8.2
CP000976_740(CP000976|pid:none) Borrelia duttonii Ly, complete g...    34   8.2
BA000026_156(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    34   8.2

>AC116922_7(AC116922|pid:none) Dictyostelium discoideum chromosome 2
            map 6061442-6097630 strain AX4, complete sequence.
          Length = 1327

 Score =  208 bits (530), Expect = 2e-52
 Identities = 135/379 (35%), Positives = 192/379 (50%), Gaps = 49/379 (12%)
 Frame = +2

Query: 101  EILFWKVFKNNYIVSVILNQIHQTEWVDYKLPLDYNINNRCKFEDIHSLFLMIRNQLFSL 280
            EILFWKVFKN Y+ + I NQIH  +W++Y  P  YN+ NR KF D HSL +M+ N L  L
Sbjct: 6    EILFWKVFKNQYLFNEIFNQIHNNQWIEYDDPNKYNVYNRGKFGDTHSLLIMLENDLLPL 65

Query: 281  IKNKIKHGDYIEIDKESIRYLFKKLTFRKQQHPQL-KNK---EQYLEVIRLLMTHRRDEF 448
            IK+KIKHGD+IEI  +S+  LF KL+     +    KNK   E YL++I LLM HRRDEF
Sbjct: 66   IKDKIKHGDHIEITYDSMLELFSKLSTEPSINSNKNKNKYKDEDYLKIIELLMKHRRDEF 125

Query: 449  EICDLTNLAIELDSPEVLRLLVHEPXXX-------------------------NPLNIKN 553
            E+ DL  +A+   SP+V+RLLV+EP                             P+N KN
Sbjct: 126  EVFDLIMMAVSSRSPDVIRLLVNEPYSVIIYPTMLENAIMYSNLATIKELVNLEPINFKN 185

Query: 554  HGIDLISAKVKKFSFR-SAHNNANQTRILQYLIDNPSLYTKP-----------------T 679
            +GI LIS + K+ S   +AH    +T I +Y+ +NPSLY+ P
Sbjct: 186  YGIKLISEEFKRKSLSLAAHRETLKTTITEYIFNNPSLYSMPPPLSLLNIQKQQHGQQGR 245

Query: 680  QEEQKRKKLKPSNSNEEDEIATTKSKKNXXXXXXXXXXXXLKKIGYENFITTYKVRMMNK 859
            Q +   K+ K S +   +     K K N             + I +E FI      ++
Sbjct: 246  QTQSTNKRFKVSETLHSNLNNKKKKKNNYNDNDDDDEEIKYEYIEFEEFIKLKSTNLLKS 305

Query: 860  MMDLGVAYIS--KPNDRNEFDIRDWLVIDRRYERLLVTLRFYFEHILDNRTKTNRDKLIE 1033
             M+L +  +S  KPN         +L +   YERL V ++   ++         R+++++
Sbjct: 306  FMELDIVVLSETKPN------FNSFLKMYHTYERLQVGIKIILKYGNTISDIKKREEILK 359

Query: 1034 EKVNSIRTNNQVGFDKLKE 1090
            E +N I  NN+ GF+KLKE
Sbjct: 360  E-INKIDRNNKRGFNKLKE 377

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,247,804,026
Number of extensions: 19958311
Number of successful extensions: 54305
Number of sequences better than 10.0: 40
Number of HSP's gapped: 54174
Number of HSP's successfully gapped: 44
Length of query: 376
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 246
Effective length of database: 624,409,729
Effective search space: 153604793334
Effective search space used: 153604793334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.58  gvh: 0.33  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: mitochondrial

>> prediction for Contig-U09547-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0