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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09543-1
Contig ID Contig-U09543-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09543-1 (Contig-U09543-1Q) /CSM_Contig/Contig-U09543-1Q.Seq.d
ATATATATATATACTTTTTATTGGAAAATAAATAAAGGATGTTTTCTCAA
TTCTTTATTTTGAACAATAAAGGTGAAACTATTATTTTTAAAGATTATCG
ATTTGATATTTCTAAAGATAGTAATGAAATATTTTTTAAACATGTTCAAT
CAATGAAATCTGAAATTACACCAGCATTTAATATTGATGGTATAAATTAT
TTATATATTAAAAAAAGAGAAATGTATTTTGTTTTCACAACAAGATTATT
AGTATCACCATCATTAGGATTTGAATTATTAAATAGAGCATCAAAGATTA
TTCAAGATTATACAGCATCATTAACAGAGGAAGCTATTAGATTGAATTTT
ATATTAATTTATGAATTATTGGATGAATTGATGGATTATGGTGTACCACA
ATCAACAGGTACAGAAACATTGAAAGCATTTGTATTTACACCACCAAAAC
AAATTAAAAGTAAACAATTAGAATCCGATTCAATCATTGATAACTTTTTA
AAAGCAACAAATAAAATATCAGTACCACCAAAACAAGGTGTAAAACCAAT
TCATTCAGGTAGTAAAAACAGTAGTAGTGGTGGTAGTAGTTTA-------
---AATCAAACGAAAATGAAATAGATAATAATAATATTGGTGGTGTTAGT
AATTTATCAGCACCAAGGTAGTAATACGACATCATTTATAGTTGATGATT
GTAATTTTCATGAATGCGCAGGATCAGGATTTCAACCTAATAATACCATC
AATTTTAAACCACCACAAGGTGATTTCACTTTATTGAAATATCGTATCTC
CAATAATAATTACACACCATTTTTAGTTAAAACCAATTTAGAATCAACCA
TTAGAAATAGATTTGATTTGGTTGTTACAATTCGTTCAAATTTTTCAAAT
AAAGTTGTACCAAATTTCATTTTCGTTTCAATTCCAGTTCCAAAATCAAC
CAAATCATTAACTCATTCATTAGATTATGGTAGTCAAAATCAAAAGGTTG
AATATAAACAATCAACTCAAGCTGGTAATCTTGTATTTTGGAGTATTAAA
AAATTAAGAGGTGGTATGGAAACTATCTTAAGAATTCAAATTCATGTTGA
TGGTGCTACCTCATCATCATCAAATAATAATCAACAACAACAACAACCTC
AAATCGATGTAGGTTCAACTTTAAGAAAAGAAATTGGTCCAATTGGTTTA
GAATTCTCAATACCACAATTTAGTTGTAGTACTTTACAAATTAAATTCTT
AAAAATGTTAGGTTCAAATATTTCACCAATACGTGGATTAGATATATAAC
NATTCAAAAAGTTTGTATCAAGAA
Gap gap included
Contig length 1314
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7513438
End point 7512120
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09543
List of clone(s) 

est1=VFB190F,1,594
est2=VFB190Z,595,1316
Translated Amino Acid sequence 
iyiyfllenk*RMFSQFFILNNKGETIIFKDYRFDISKDSNEIFFKHVQSMKSEITPAFN
IDGINYLYIKKREMYFVFTTRLLVSPSLGFELLNRASKIIQDYTASLTEEAIRLNFILIY
ELLDELMDYGVPQSTGTETLKAFVFTPPKQIKSKQLESDSIIDNFLKATNKISVPPKQGV
KPIHSGSKNSSSGGSSL---

---SNENEIDNNNIGGVSNLSAPR**ydiiys**l*fs*mrririst**yhqf*tttr*f
hfieisylq**lhtifs*nqfrinh*k*i*fgcynsfkffk*sctkfhfrfnssskinqi
insfirlw*skskg*i*tinssw*sciley*kikrwygnylknsnsc*wcyliiik**st
ttttsnrcrfnfkkrnwsnwfrilntti*l*yftn*ilknvrfkyftntwiryitiqkvc
ik
Translated Amino Acid sequence (All Frames) 
Frame A:
iyiytfywkinkgcflnslf*tikvkllflkiidliflkivmkyflnmfnq*nlklhqhl
ilmv*iiyilkkekcilfsqqdy*yhhh*dlny*iehqrlfkiiqhh*qrklld*ily*f
mnywmn*wimvyhnqqvqkh*khlylhhqnklkvnn*npiqslitf*kqqikyqyhqnkv
*nqfiqvvktvvvvvvv---

---nqtkmk*iiiilvvlviyqhqgsnttsfivddcnfhecagsgfqpnntinfkppqgd
ftllkyrisnnnytpflvktnlestirnrfdlvvtirsnfsnkvvpnfifvsipvpkstk
slthsldygsqnqkveykqstqagnlvfwsikklrggmetilriqihvdgatssssnnnq
qqqqpqidvgstlrkeigpiglefsipqfscstlqikflkmlgsnispirgldi*xfkkf
vsr

Frame B:
yiyilfigk*ikdvfsilyfeq*r*nyyf*rlsi*yf*r***nif*tcsinei*nytsi*
y*wyklfiy*kkrnvfcfhnkiisitiiri*iik*sikdysrlysiinrgsy*iefyinl
*iig*idglwcttinryrniesiciyttktn*k*tirirfnh**lfksnk*nisttktrc
ktnsfr**kq**ww**f---

---ikrk*nr***ywwc**fistkvvirhhl*lmivifmnaqdqdfnliipsilnhhkvi
sly*nivspiiithhf*lkpi*nqpleidliwllqfvqifqiklyqisfsfqfqfqnqpn
h*lih*imvvkikrlninnqlklvilyfgvlkn*evvwkls*efkfmlmvlphhhqiiin
nnnnlksm*vql*ekklvqlv*nsqyhnlvvvlyklns*kc*vqifhqyvd*iynxsksl
yqe

Frame C:
iyiyfllenk*RMFSQFFILNNKGETIIFKDYRFDISKDSNEIFFKHVQSMKSEITPAFN
IDGINYLYIKKREMYFVFTTRLLVSPSLGFELLNRASKIIQDYTASLTEEAIRLNFILIY
ELLDELMDYGVPQSTGTETLKAFVFTPPKQIKSKQLESDSIIDNFLKATNKISVPPKQGV
KPIHSGSKNSSSGGSSL---

---SNENEIDNNNIGGVSNLSAPR**ydiiys**l*fs*mrririst**yhqf*tttr*f
hfieisylq**lhtifs*nqfrinh*k*i*fgcynsfkffk*sctkfhfrfnssskinqi
insfirlw*skskg*i*tinssw*sciley*kikrwygnylknsnsc*wcyliiik**st
ttttsnrcrfnfkkrnwsnwfrilntti*l*yftn*ilknvrfkyftntwiryitiqkvc
ik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09543-1 (Contig-U09543-1Q)
/CSM_Contig/Contig-U09543-1Q.Seq.d
         (1324 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09543-1 (Contig-U09543-1Q) /CSM_Contig/Conti...  2492  0.0
Contig-U10772-1 (Contig-U10772-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U09565-1 (Contig-U09565-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U09098-1 (Contig-U09098-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U02839-1 (Contig-U02839-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U12174-1 (Contig-U12174-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11936-1 (Contig-U11936-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11303-1 (Contig-U11303-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14905-1 (Contig-U14905-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U13527-1 (Contig-U13527-1Q) /CSM_Contig/Conti...    44  4e-04

>Contig-U09543-1 (Contig-U09543-1Q) /CSM_Contig/Contig-U09543-1Q.Seq.d
          Length = 1324

 Score = 2492 bits (1257), Expect = 0.0
 Identities = 1304/1311 (99%)
 Strand = Plus / Plus

                                                                        
Query: 14   ctttttattggaaaataaataaaggatgttttctcaattctttattttgaacaataaagg 73
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14   ctttttattggaaaataaataaaggatgttttctcaattctttattttgaacaataaagg 73

                                                                        
Query: 74   tgaaactattatttttaaagattatcgatttgatatttctaaagatagtaatgaaatatt 133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74   tgaaactattatttttaaagattatcgatttgatatttctaaagatagtaatgaaatatt 133

                                                                        
Query: 134  ttttaaacatgttcaatcaatgaaatctgaaattacaccagcatttaatattgatggtat 193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134  ttttaaacatgttcaatcaatgaaatctgaaattacaccagcatttaatattgatggtat 193

                                                                        
Query: 194  aaattatttatatattnnnnnnngagaaatgtattttgttttcacaacaagattattagt 253
            ||||||||||||||||       |||||||||||||||||||||||||||||||||||||
Sbjct: 194  aaattatttatatattaaaaaaagagaaatgtattttgttttcacaacaagattattagt 253

                                                                        
Query: 254  atcaccatcattaggatttgaattattaaatagagcatcaaagattattcaagattatac 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254  atcaccatcattaggatttgaattattaaatagagcatcaaagattattcaagattatac 313

                                                                        
Query: 314  agcatcattaacagaggaagctattagattgaattttatattaatttatgaattattgga 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314  agcatcattaacagaggaagctattagattgaattttatattaatttatgaattattgga 373

                                                                        
Query: 374  tgaattgatggattatggtgtaccacaatcaacaggtacagaaacattgaaagcatttgt 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374  tgaattgatggattatggtgtaccacaatcaacaggtacagaaacattgaaagcatttgt 433

                                                                        
Query: 434  atttacaccaccaaaacaaattaaaagtaaacaattagaatccgattcaatcattgataa 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434  atttacaccaccaaaacaaattaaaagtaaacaattagaatccgattcaatcattgataa 493

                                                                        
Query: 494  ctttttaaaagcaacaaataaaatatcagtaccaccaaaacaaggtgtaaaaccaattca 553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494  ctttttaaaagcaacaaataaaatatcagtaccaccaaaacaaggtgtaaaaccaattca 553

                                                                        
Query: 554  ttcaggtagtaaaaacagtagtagtggtggtagtagtttannnnnnnnnnaatcaaacga 613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554  ttcaggtagtaaaaacagtagtagtggtggtagtagtttannnnnnnnnnaatcaaacga 613

                                                                        
Query: 614  aaatgaaatagataataataatattggtggtgttagtaatttatcagcaccaaggtagta 673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614  aaatgaaatagataataataatattggtggtgttagtaatttatcagcaccaaggtagta 673

                                                                        
Query: 674  atacgacatcatttatagttgatgattgtaattttcatgaatgcgcaggatcaggatttc 733
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  atacgacatcatttatagttgatgattgtaattttcatgaatgcgcaggatcaggatttc 733

                                                                        
Query: 734  aacctaataataccatcaattttaaaccaccacaaggtgatttcactttattgaaatatc 793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  aacctaataataccatcaattttaaaccaccacaaggtgatttcactttattgaaatatc 793

                                                                        
Query: 794  gtatctccaataataattacacaccatttttagttaaaaccaatttagaatcaaccatta 853
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  gtatctccaataataattacacaccatttttagttaaaaccaatttagaatcaaccatta 853

                                                                        
Query: 854  gaaatagatttgatttggttgttacaattcgttcaaatttttcaaataaagttgtaccaa 913
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  gaaatagatttgatttggttgttacaattcgttcaaatttttcaaataaagttgtaccaa 913

                                                                        
Query: 914  atttcattttcgtttcaattccagttccaaaatcaaccaaatcattaactcattcattag 973
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  atttcattttcgtttcaattccagttccaaaatcaaccaaatcattaactcattcattag 973

                                                                        
Query: 974  attatggtagtcaaaatcaaaaggttgaatataaacaatcaactcaagctggtaatcttg 1033
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  attatggtagtcaaaatcaaaaggttgaatataaacaatcaactcaagctggtaatcttg 1033

                                                                        
Query: 1034 tattttggagtattaaaaaattaagaggtggtatggaaactatcttaagaattcaaattc 1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 tattttggagtattaaaaaattaagaggtggtatggaaactatcttaagaattcaaattc 1093

                                                                        
Query: 1094 atgttgatggtgctacctcatcatcatcaaataataatcaacaacaacaacaacctcaaa 1153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 atgttgatggtgctacctcatcatcatcaaataataatcaacaacaacaacaacctcaaa 1153

                                                                        
Query: 1154 tcgatgtaggttcaactttaagaaaagaaattggtccaattggtttagaattctcaatac 1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 tcgatgtaggttcaactttaagaaaagaaattggtccaattggtttagaattctcaatac 1213

                                                                        
Query: 1214 cacaatttagttgtagtactttacaaattaaattcttaaaaatgttaggttcaaatattt 1273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 cacaatttagttgtagtactttacaaattaaattcttaaaaatgttaggttcaaatattt 1273

                                                               
Query: 1274 caccaatacgtggattagatatataacnattcaaaaagtttgtatcaagaa 1324
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 caccaatacgtggattagatatataacnattcaaaaagtttgtatcaagaa 1324


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 914 atttcattttcgttt 928
           |||||||||||||||
Sbjct: 622 atttcattttcgttt 608


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 608 aaacgaaaatgaaat 622
           |||||||||||||||
Sbjct: 928 aaacgaaaatgaaat 914


>Contig-U10772-1 (Contig-U10772-1Q) /CSM_Contig/Contig-U10772-1Q.Seq.d
          Length = 4492

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 1124 ataataatcaacaacaacaacaac 1147
            ||||||||||||||||||||||||
Sbjct: 3540 ataataatcaacaacaacaacaac 3563


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                     
Query: 1123 aataataatcaacaacaacaacaac 1147
            |||||| | ||||||||||||||||
Sbjct: 3542 aataatcaacaacaacaacaacaac 3566


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1132 caacaacaacaacaac 1147
            ||||||||||||||||
Sbjct: 3557 caacaacaacaacaac 3572


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                
Query: 1111 tcatcatcatcaaataataa 1130
            ||||||||||||||| ||||
Sbjct: 1723 tcatcatcatcaaatgataa 1742


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1132 caacaacaacaacaac 1147
            ||||||||||||||||
Sbjct: 3566 caacaacaacaacaac 3581


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1132 caacaacaacaacaac 1147
            ||||||||||||||||
Sbjct: 3560 caacaacaacaacaac 3575


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1132 caacaacaacaacaac 1147
            ||||||||||||||||
Sbjct: 3563 caacaacaacaacaac 3578


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1132 caacaacaacaacaac 1147
            ||||||||||||||||
Sbjct: 3554 caacaacaacaacaac 3569


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 625 ataataataatattg 639
           |||||||||||||||
Sbjct: 815 ataataataatattg 829


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 618 gaaatagataataataata 636
           |||||| ||||||||||||
Sbjct: 74  gaaataaataataataata 92


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 625 ataataataatattg 639
           |||||||||||||||
Sbjct: 788 ataataataatattg 802


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1132 caacaacaacaacaa 1146
            |||||||||||||||
Sbjct: 3569 caacaacaacaacaa 3583


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1111 tcatcatcatcaaat 1125
            |||||||||||||||
Sbjct: 3395 tcatcatcatcaaat 3409


>Contig-U09565-1 (Contig-U09565-1Q) /CSM_Contig/Contig-U09565-1Q.Seq.d
          Length = 762

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 1124 ataataatcaacaacaacaacaac 1147
            ||||||||||||||||||||||||
Sbjct: 694  ataataatcaacaacaacaacaac 717


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                     
Query: 1123 aataataatcaacaacaacaacaac 1147
            |||||| | ||||||||||||||||
Sbjct: 696  aataatcaacaacaacaacaacaac 720


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1132 caacaacaacaacaa 1146
            |||||||||||||||
Sbjct: 708  caacaacaacaacaa 722


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,632
Number of Sequences: 6905
Number of extensions: 55632
Number of successful extensions: 10621
Number of sequences better than 10.0: 1261
length of query: 1324
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1308
effective length of database: 5,564,391
effective search space: 7278223428
effective search space used: 7278223428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09543-1 (Contig-U09543-1Q) /CSM_Contig/Contig-U09543-1Q.Seq.d
         (1324 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ429511) Dictyostelium discoideum cDNA clone:ddv3c23, 3' e...  1423   0.0    1
(AY007280) Dictyostelium discoideum clathrin-adaptor medium ...  1215   0.0    3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...  1215   0.0    3
(BJ411290) Dictyostelium discoideum cDNA clone:ddv3c23, 5' e...   747   0.0    2
(X57149) D.discoideum EB4 gene for prespore vesicle protein.      165   5e-36  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    50   8e-08  8
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    42   4e-06  11
(AB102779) Dictyostelium discoideum kin2 mRNA for kinesin-re...    50   5e-06  6
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   1e-05  12
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    44   2e-05  9
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    44   3e-05  10
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    38   5e-05  13
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    36   2e-04  12
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   2e-04  18
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    44   2e-04  9
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    48   3e-04  9
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    38   4e-04  12
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    42   4e-04  10
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   5e-04  16
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   5e-04  12
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    50   6e-04  7
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    34   9e-04  13
(AZ931842) 474.dhz90g10.s1 Saccharomyces unisporus NRRL Y-15...    58   9e-04  1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    42   0.001  11
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.001  19
(AY392444) Dictyostelium discoideum RNA-binding protein gene...    40   0.001  5
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    50   0.002  4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    48   0.002  6
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    42   0.002  6
(AF072431) Dictyostelium discoideum putative RNA binding pro...    40   0.003  4
(FE265843) CAZO4747.fwd CAZO Naegleria gruberi Flagellate St...    48   0.003  3
(AR551245) Sequence 6376 from patent US 6747137.                   38   0.004  4
(EH015469) USDA-FP_188067 Lysiphlebus testaceipes adult whol...    50   0.004  2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   0.004  5
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...    32   0.005  8
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    36   0.006  11
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      42   0.008  17
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    36   0.009  11
(AJ002383) Dictyostelium discoideum mybB gene.                     48   0.009  3
(BJ360253) Dictyostelium discoideum cDNA clone:ddc5m02, 5' e...    48   0.012  2
(BJ325157) Dictyostelium discoideum cDNA clone:dda13b05, 5' ...    48   0.013  2
(AF482394) Dictyostelium discoideum ABC transporter AbcG16 (...    54   0.014  1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    50   0.014  13
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.014  11
(BJ389881) Dictyostelium discoideum cDNA clone:dds20n08, 5' ...    48   0.015  2
(DY894168) CeleSEQ13681 Cunninghamella elegans pBluescript (...    42   0.015  3
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    36   0.015  14
(AL035476) Plasmodium falciparum MAL4P3.                           34   0.015  13
(CT301886) Sus scrofa genomic clone CH242-214G5, genomic sur...    40   0.015  3
(AY484460) Dictyostelium discoideum kinesin family member 3 ...    36   0.017  5
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    34   0.017  14
(EY323514) CAWX9042.fwd CAWX Helobdella robusta Primary Earl...    42   0.019  2
(EY325483) CAWY10962.fwd CAWY Helobdella robusta Subtracted ...    42   0.020  2
(EY333375) CAWY565.fwd CAWY Helobdella robusta Subtracted Ea...    42   0.020  2
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.020  13
(BX679675) Zebrafish DNA sequence from clone CH211-37L23 in ...    40   0.021  8
(U66913) Dictyostelium discoideum ORF DG1040 gene, partial cds.    44   0.026  3
(AP006852) Candida albicans genomic DNA, chromosome 7, compl...    42   0.026  12
(AC149288) Solanum demissum chromosome 5 clone PGEC446J10, c...    42   0.028  8
(CR855319) Zebrafish DNA sequence from clone DKEY-1F17 in li...    38   0.031  7
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    36   0.031  8
(AC114265) Dictyostelium discoideum chromosome 2 map 4520461...    38   0.038  2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    34   0.038  15
(AY160096) Dictyostelium discoideum nucleotide exchange fact...    42   0.040  4
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    34   0.044  11
(BJ397401) Dictyostelium discoideum cDNA clone:dds46l06, 5' ...    42   0.044  2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    36   0.046  12
(DY892079) CeleSEQ8987 Cunninghamella elegans pBluescript (E...    34   0.053  3
(EF059265) Synthetic construct Saccharomyces cerevisiae clon...    52   0.055  1
(Z73615) S.cerevisiae chromosome XVI reading frame ORF YPL259c.    52   0.055  1
(X60288) S.cerevisiae YAP54 gene for medium chains of clathr...    52   0.055  1
(DJ208212) Method for identification of useful proteins deri...    52   0.055  1
(DJ025884) Genome-wide DNA marker of Saccharomyces cerevisiae.     52   0.055  1
(AX830540) Sequence 1260 from Patent WO03072602.                   52   0.055  1
(AX819510) Sequence 1260 from Patent EP1338608.                    52   0.055  1
(AX595412) Sequence 1066 from Patent EP1258494.                    52   0.055  1
(AR557425) Sequence 12556 from patent US 6747137.                  52   0.055  1
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    52   0.055  1
(EH009807) USDA-FP_182968 Lysiphlebus testaceipes adult whol...    52   0.055  1
(DB657266) Saccharomyces cerevisiae mRNA, clone: Y040_C19_F....    52   0.055  1
(AU071982) Dictyostelium discoideum slug cDNA, clone SSD102.       52   0.055  1
(AU051912) Dictyostelium discoideum slug cDNA, clone SSC382.       52   0.055  1
(AU037762) Dictyostelium discoideum slug cDNA, clone SSE262.       52   0.055  1
(C91150) Dictyostelium discoideum slug cDNA, clone SSJ688.         52   0.055  1
(C84086) Dictyostelium discoideum slug cDNA, clone SSC742.         52   0.055  1
(BM901123) rc45c08.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    52   0.055  1
(BM883747) rc22d04.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    52   0.055  1
(BJ402793) Dictyostelium discoideum cDNA clone:dds18e09, 3' ...    52   0.055  1
(BJ402606) Dictyostelium discoideum cDNA clone:dds17a13, 3' ...    52   0.055  1
(BJ402128) Dictyostelium discoideum cDNA clone:dds20g16, 3' ...    52   0.055  1
(BJ401650) Dictyostelium discoideum cDNA clone:dds23o23, 3' ...    52   0.055  1
(BJ401442) Dictyostelium discoideum cDNA clone:dds23c09, 3' ...    52   0.055  1
(BJ399584) Dictyostelium discoideum cDNA clone:dds6i17, 3' e...    52   0.055  1
(BJ397920) Dictyostelium discoideum cDNA clone:dds10o03, 3' ...    52   0.055  1
(AC023072) Homo sapiens chromosome 11 clone RP11-580I19 map ...    36   0.056  11
(CD681969) rj22b08.y1 Meloidogyne chitwoodi egg SL1 TOPO v1 ...    50   0.060  2
(AB030033) Dictyostelium discoideum gene for AmiB, complete ...    36   0.061  7
(FF256275) G809P1111RC3.T0 Culex pipiens quinquefasciatus Fi...    42   0.063  2
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **...    40   0.064  10
(FF254517) G809P1109RH23.T0 Culex pipiens quinquefasciatus F...    42   0.065  2

>(BJ429511) Dictyostelium discoideum cDNA clone:ddv3c23, 3' end,
            single read.
          Length = 722

 Score = 1423 bits (718), Expect = 0.0
 Identities = 721/721 (100%)
 Strand = Plus / Minus


Query: 604  aatcaaacgaaaatgaaatagataataataatattggtggtgttagtaatttatcagcac 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  aatcaaacgaaaatgaaatagataataataatattggtggtgttagtaatttatcagcac 663


Query: 664  caaggtagtaatacgacatcatttatagttgatgattgtaattttcatgaatgcgcagga 723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  caaggtagtaatacgacatcatttatagttgatgattgtaattttcatgaatgcgcagga 603


Query: 724  tcaggatttcaacctaataataccatcaattttaaaccaccacaaggtgatttcacttta 783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  tcaggatttcaacctaataataccatcaattttaaaccaccacaaggtgatttcacttta 543


Query: 784  ttgaaatatcgtatctccaataataattacacaccatttttagttaaaaccaatttagaa 843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  ttgaaatatcgtatctccaataataattacacaccatttttagttaaaaccaatttagaa 483


Query: 844  tcaaccattagaaatagatttgatttggttgttacaattcgttcaaatttttcaaataaa 903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  tcaaccattagaaatagatttgatttggttgttacaattcgttcaaatttttcaaataaa 423


Query: 904  gttgtaccaaatttcattttcgtttcaattccagttccaaaatcaaccaaatcattaact 963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422  gttgtaccaaatttcattttcgtttcaattccagttccaaaatcaaccaaatcattaact 363


Query: 964  cattcattagattatggtagtcaaaatcaaaaggttgaatataaacaatcaactcaagct 1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362  cattcattagattatggtagtcaaaatcaaaaggttgaatataaacaatcaactcaagct 303


Query: 1024 ggtaatcttgtattttggagtattaaaaaattaagaggtggtatggaaactatcttaaga 1083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  ggtaatcttgtattttggagtattaaaaaattaagaggtggtatggaaactatcttaaga 243


Query: 1084 attcaaattcatgttgatggtgctacctcatcatcatcaaataataatcaacaacaacaa 1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242  attcaaattcatgttgatggtgctacctcatcatcatcaaataataatcaacaacaacaa 183


Query: 1144 caacctcaaatcgatgtaggttcaactttaagaaaagaaattggtccaattggtttagaa 1203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182  caacctcaaatcgatgtaggttcaactttaagaaaagaaattggtccaattggtttagaa 123


Query: 1204 ttctcaataccacaatttagttgtagtactttacaaattaaattcttaaaaatgttaggt 1263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122  ttctcaataccacaatttagttgtagtactttacaaattaaattcttaaaaatgttaggt 63


Query: 1264 tcaaatatttcaccaatacgtggattagatatataacnattcaaaaagtttgtatcaaga 1323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62   tcaaatatttcaccaatacgtggattagatatataacnattcaaaaagtttgtatcaaga 3


Query: 1324 a 1324
            |
Sbjct: 2    a 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,926,810,250
Number of extensions: 141044677
Number of successful extensions: 13800666
Number of sequences better than 10.0: 1001
Length of query: 1324
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1300
Effective length of database: 97,308,875,965
Effective search space: 126501538754500
Effective search space used: 126501538754500
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09543-1 (Contig-U09543-1Q) /CSM_Contig/Contig-U09543-1Q.Seq.d
         (1324 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_87(AC117075|pid:none) Dictyostelium discoideum chromoso...   387   e-106
EF676869_1(EF676869|pid:none) Picea sitchensis clone WS02756_J05...   154   5e-36
AL035356_25(AL035356|pid:none) Arabidopsis thaliana DNA chromoso...   148   4e-34
AK059588_1(AK059588|pid:none) Oryza sativa Japonica Group cDNA c...   148   5e-34
AE014186_183(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...   133   2e-29
AM910991_168(AM910991|pid:none) Plasmodium knowlesi strain H chr...   125   4e-27
AM457383_2(AM457383|pid:none) Vitis vinifera contig VV78X276383....   121   6e-26
AL807389_1(AL807389|pid:none) Zebrafish DNA sequence from clone ...   113   1e-23
AC159404_43(AC159404|pid:none) Trypanosoma brucei chromosome 8 c...   110   1e-22
CP000596_132(CP000596|pid:none) Ostreococcus lucimarinus CCE9901...   108   6e-22
BC153725_1(BC153725|pid:none) Xenopus tropicalis hypothetical pr...   106   2e-21
CR857720_1(CR857720|pid:none) Pongo abelii mRNA; cDNA DKFZp469B1...   104   8e-21
AF020796_1(AF020796|pid:none) Homo sapiens mu-adaptin-related pr...   103   1e-20
AF155158_1(AF155158|pid:none) Homo sapiens adaptor-related prote...   103   1e-20
(O00189) RecName: Full=AP-4 complex subunit mu-1; AltName: Full=...   103   1e-20
CR940348_316(CR940348|pid:none) Theileria annulata strain Ankara...   103   1e-20
AC116977_67(AC116977|pid:none) Dictyostelium discoideum chromoso...   100   1e-19
(P54672) RecName: Full=AP-2 complex subunit mu; AltName: Full=Mu...   100   1e-19
(Q2PWT8) RecName: Full=AP-4 complex subunit mu-1; AltName: Full=...   100   2e-19
AE017342_187(AE017342|pid:none) Cryptococcus neoformans var. neo...    99   4e-19
AF467697_1(AF467697|pid:none) Dermacentor variabilis clathrin-ad...    99   4e-19
BT078337_1(BT078337|pid:none) Lepeophtheirus salmonis clone lsal...    97   1e-18
BX294009_23(BX294009|pid:none) Neurospora crassa DNA linkage gro...    96   2e-18
AB261063_1(AB261063|pid:none) Entamoeba histolytica gene for mu ...    96   3e-18
AM270053_79(AM270053|pid:none) Aspergillus niger contig An03c012...    96   4e-18
AF252643_1(AF252643|pid:none) Drosophila simulans strain sim1 cl...    96   4e-18
CU633446_84(CU633446|pid:none) Podospora anserina genomic DNA ch...    96   4e-18
CU633446_75(CU633446|pid:none) Podospora anserina genomic DNA ch...    96   4e-18
CR382128_448(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    96   4e-18
AY849627_1(AY849627|pid:none) Magnaporthe grisea clathrin coat a...    95   5e-18
T33569(T33569)hypothetical protein R160.1 - Caenorhabditis elegans     94   8e-18
AF099001_8(AF099001|pid:none) Caenorhabditis elegans cosmid R160...    94   8e-18
AM270126_42(AM270126|pid:none) Aspergillus niger contig An07c008...    94   1e-17
CU928175_216(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    94   1e-17
(P35603) RecName: Full=AP-2 complex subunit mu; AltName: Full=Mu...    94   1e-17
AP007164_612(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    93   2e-17
AM920437_1424(AM920437|pid:none) Penicillium chrysogenum Wiscons...    93   2e-17
AK159534_1(AK159534|pid:none) Mus musculus osteoclast-like cell ...    93   2e-17
BT077936_1(BT077936|pid:none) Lepeophtheirus salmonis clone lsal...    93   2e-17
BT073685_1(BT073685|pid:none) Oncorhynchus mykiss clone omyk-evo...    93   2e-17
(Q5NVF7) RecName: Full=AP-2 complex subunit mu-1; AltName: Full=...    93   2e-17
(Q7ZW98) RecName: Full=AP-2 complex subunit mu-1-A; AltName: Ful...    92   3e-17
AM494959_105(AM494959|pid:none) Leishmania braziliensis chromoso...    92   4e-17
CR860385_1(CR860385|pid:none) Pongo abelii mRNA; cDNA DKFZp459E0...    92   5e-17
AK168414_1(AK168414|pid:none) Mus musculus 17 days embryo stomac...    91   7e-17
CU928170_524(CU928170|pid:none) Kluyveromyces thermotolerans str...    91   7e-17
AY117037_1(AY117037|pid:none) Toxoplasma gondii mu1 adaptin (mu1...    91   7e-17
CR861136_1(CR861136|pid:none) Pongo abelii mRNA; cDNA DKFZp459I2...    91   7e-17
CR861064_1(CR861064|pid:none) Pongo abelii mRNA; cDNA DKFZp459A2...    91   7e-17
CR861020_1(CR861020|pid:none) Pongo abelii mRNA; cDNA DKFZp459M2...    91   7e-17
D63475_1(D63475|pid:none) Homo sapiens mRNA for KIAA0109 gene, p...    91   7e-17
X60288_1(X60288|pid:none) S.cerevisiae YAP54 gene for medium cha...    91   7e-17
G02088(G02088) assembly protein 50 - human  &U36188_1(U36188|pid...    91   9e-17
BT045307_1(BT045307|pid:none) Salmo salar clone ssal-rgf-518-033...    91   9e-17
AK027528_1(AK027528|pid:none) Homo sapiens cDNA FLJ14622 fis, cl...    91   1e-16
AC159408_9(AC159408|pid:none) Trypanosoma brucei chromosome 7 cl...    91   1e-16
AF514806_1(AF514806|pid:none) Leishmania mexicana mexicana mu ad...    91   1e-16
BC105477_1(BC105477|pid:none) Bos taurus similar to adaptor-rela...    91   1e-16
(Q32Q06) RecName: Full=AP-1 complex subunit mu-1; AltName: Full=...    91   1e-16
BC097533_1(BC097533|pid:none) Xenopus laevis hypothetical protei...    91   1e-16
Y08386_1(Y08386|pid:none) G.gallus mRNA for mu-ARP1 protein.           91   1e-16
(P35585) RecName: Full=AP-1 complex subunit mu-1; AltName: Full=...    91   1e-16
AJ719417_1(AJ719417|pid:none) Gallus gallus mRNA for hypothetica...    91   1e-16
AK297824_1(AK297824|pid:none) Homo sapiens cDNA FLJ58317 complet...    91   1e-16
AB209808_1(AB209808|pid:none) Homo sapiens mRNA for adaptor-rela...    91   1e-16
(Q2KJ81) RecName: Full=AP-1 complex subunit mu-1; AltName: Full=...    91   1e-16
DQ059565_1(DQ059565|pid:none) Homo sapiens leukemia T cell speci...    91   1e-16
AK010478_1(AK010478|pid:none) Mus musculus ES cells cDNA, RIKEN ...    91   1e-16
CT005261_112(CT005261|pid:none) Leishmania major strain Friedlin...    89   3e-16
DQ219843_1(DQ219843|pid:none) Tetrahymena thermophila Apm2p (APM...    89   3e-16
CR382124_599(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    89   3e-16
BC085546_1(BC085546|pid:none) Danio rerio adaptor-related protei...    89   3e-16
CP000496_1027(CP000496|pid:none) Pichia stipitis CBS 6054 chromo...    89   3e-16
AY394943_1(AY394943|pid:none) Danio rerio clone RK046A4D02 adapt...    89   3e-16
(Q3SYW1) RecName: Full=AP-1 complex subunit mu-2; AltName: Full=...    89   3e-16
BT045097_1(BT045097|pid:none) Salmo salar clone ssal-rgf-511-340...    89   3e-16
AL844509_113(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    89   3e-16
AE017347_271(AE017347|pid:none) Cryptococcus neoformans var. neo...    88   6e-16
CR382136_608(CR382136|pid:none) Debaryomyces hansenii strain CBS...    88   6e-16
BC003704_1(BC003704|pid:none) Mus musculus adaptor protein compl...    88   6e-16
BC047180_1(BC047180|pid:none) Danio rerio zgc:85653, mRNA (cDNA ...    88   8e-16
AE016817_384(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    88   8e-16
AK222946_1(AK222946|pid:none) Homo sapiens mRNA for adaptor-rela...    87   1e-15
CR382129_477(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    87   1e-15
(Q54HS9) RecName: Full=AP-1 complex subunit mu; AltName: Full=Ad...    87   2e-15
AY007278_1(AY007278|pid:none) Dictyostelium discoideum clathrin-...    87   2e-15
FN313914_1(FN313914|pid:none) Schistosoma japonicum isolate Anhu...    87   2e-15
AY810336_1(AY810336|pid:none) Schistosoma japonicum SJCHGC09053 ...    87   2e-15
AB169109_1(AB169109|pid:none) Macaca fascicularis testis cDNA, c...    86   3e-15
BT054806_1(BT054806|pid:none) Zea mays full-length cDNA clone ZM...    86   3e-15
A49837(A49837) clathrin-associated protein unc-101 - Caenorhabdi...    85   5e-15
BT058650_1(BT058650|pid:none) Salmo salar clone Contig2944 AP-1 ...    84   9e-15
FB336095_1(FB336095|pid:none) Sequence 3621 from Patent WO200711...    84   9e-15
AM487128_1(AM487128|pid:none) Vitis vinifera contig VV78X231955....    84   1e-14
T23603(T23603)hypothetical protein K11D2.3 - Caenorhabditis eleg...    84   1e-14
FJ664261_1(FJ664261|pid:none) Annona cherimola AP-2 complex subu...    84   1e-14
EF678386_1(EF678386|pid:none) Picea sitchensis clone WS02919_E02...    83   2e-14
BC077578_1(BC077578|pid:none) Xenopus laevis adaptor-related pro...    83   3e-14
AK304510_1(AK304510|pid:none) Homo sapiens cDNA FLJ53962 complet...    83   3e-14
T15189(T15189)hypothetical protein F55A12.7 - Caenorhabditis ele...    82   3e-14
EF146351_1(EF146351|pid:none) Populus trichocarpa clone WS0117_H...    82   3e-14
CR940347_518(CR940347|pid:none) Theileria annulata strain Ankara...    82   4e-14
AK295999_1(AK295999|pid:none) Homo sapiens cDNA FLJ53049 complet...    81   7e-14
AK294159_1(AK294159|pid:none) Homo sapiens cDNA FLJ53034 complet...    81   7e-14
AK297849_1(AK297849|pid:none) Homo sapiens cDNA FLJ53069 complet...    81   1e-13
AP003023_1(AP003023|pid:none) Oryza sativa Japonica Group genomi...    80   1e-13
AP008207_2269(AP008207|pid:none) Oryza sativa (japonica cultivar...    80   1e-13
CR954216_246(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    80   1e-13
BT067202_1(BT067202|pid:none) Zea mays full-length cDNA clone ZM...    80   2e-13
CR382123_167(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    80   2e-13
CP001324_332(CP001324|pid:none) Micromonas sp. RCC299 chromosome...    79   3e-13
FN392322_888(FN392322|pid:none) Pichia pastoris GS115 chromosome...    79   4e-13
AK293188_1(AK293188|pid:none) Homo sapiens cDNA FLJ57898 complet...    79   5e-13
AY804582_1(AY804582|pid:none) Drosophila santomea strain STO.4 A...    78   6e-13
AY810865_1(AY810865|pid:none) Schistosoma japonicum SJCHGC06381 ...    78   8e-13
CR382135_433(CR382135|pid:none) Debaryomyces hansenii strain CBS...    78   8e-13
BC077107_1(BC077107|pid:none) Danio rerio zgc:100915, mRNA (cDNA...    77   1e-12
FN357346_24(FN357346|pid:none) Schistosoma mansoni genome sequen...    77   1e-12
AK297578_1(AK297578|pid:none) Homo sapiens cDNA FLJ50581 complet...    77   1e-12
AP007167_509(AP007167|pid:none) Aspergillus oryzae RIB40 genomic...    77   1e-12
(Q09718) RecName: Full=AP-2 complex subunit mu; AltName: Full=Mu...    76   2e-12
BT001492_1(BT001492|pid:none) Drosophila melanogaster LD27989 fu...    76   2e-12
AJ250232_1(AJ250232|pid:none) Fugu rubripes partial ap47 gene fo...    76   2e-12
CP000595_200(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...    76   2e-12
BX640759_1(BX640759|pid:none) Homo sapiens mRNA; cDNA DKFZp686E1...    76   3e-12
AY912460_1(AY912460|pid:none) Mus musculus strain A/J adaptor-re...    74   9e-12
(Q99186) RecName: Full=AP-2 complex subunit mu; AltName: Full=Mu...    74   9e-12
AK293590_1(AK293590|pid:none) Homo sapiens cDNA FLJ55957 complet...    73   2e-11
FN392320_1147(FN392320|pid:none) Pichia pastoris GS115 chromosom...    73   3e-11
BC127443_1(BC127443|pid:none) Rattus norvegicus cDNA clone MGC:1...    72   6e-11
AB261064_1(AB261064|pid:none) Entamoeba histolytica gene for mu ...    71   8e-11
CU928170_272(CU928170|pid:none) Kluyveromyces thermotolerans str...    69   4e-10
CR788251_3(CR788251|pid:none) Zebrafish DNA sequence from clone ...    68   6e-10
BC087452_1(BC087452|pid:none) Xenopus laevis hypothetical LOC496...    68   8e-10
AY394946_1(AY394946|pid:none) Danio rerio clone RK047A3C01 adapt...    68   8e-10
AE014188_176(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    68   8e-10
CR760358_1(CR760358|pid:none) Xenopus tropicalis finished cDNA, ...    67   1e-09
FM992689_713(FM992689|pid:none) Candida dubliniensis CD36 chromo...    67   1e-09
(Q5R478) RecName: Full=AP-3 complex subunit mu-1; AltName: Full=...    67   2e-09
(Q24K11) RecName: Full=AP-3 complex subunit mu-1; AltName: Full=...    67   2e-09
AY346108_1(AY346108|pid:none) Cricetulus griseus  adaptor protei...    67   2e-09
BC070925_1(BC070925|pid:none) Rattus norvegicus adaptor-related ...    67   2e-09
BC071355_1(BC071355|pid:none) Danio rerio adaptor-related protei...    66   2e-09
CT009570_2(CT009570|pid:none) Zebrafish DNA sequence from clone ...    66   2e-09
FN357344_17(FN357344|pid:none) Schistosoma mansoni genome sequen...    66   2e-09
FN357344_18(FN357344|pid:none) Schistosoma mansoni genome sequen...    66   2e-09
CR940347_574(CR940347|pid:none) Theileria annulata strain Ankara...    66   3e-09
AM502240_108(AM502240|pid:none) Leishmania infantum chromosome 22.     65   4e-09
AF532199_1(AF532199|pid:none) Trypanosoma brucei adaptor complex...    65   7e-09
(Q9GPF1) RecName: Full=AP-3 complex subunit mu; AltName: Full=Ad...    65   7e-09
AC087325_21(AC087325|pid:none) Trypanosoma brucei chromosome 4 c...    65   7e-09
BC056257_1(BC056257|pid:none) Homo sapiens adaptor-related prote...    63   2e-08
(Q8R2R9) RecName: Full=AP-3 complex subunit mu-2; AltName: Full=...    63   2e-08
AY039763_1(AY039763|pid:none) Mus musculus adaptor-related prote...    63   2e-08
FB336085_1(FB336085|pid:none) Sequence 3611 from Patent WO200711...    63   2e-08
EU962347_1(EU962347|pid:none) Zea mays clone 241944 AP-3 complex...    63   3e-08
(P53678) RecName: Full=AP-3 complex subunit mu-2; AltName: Full=...    63   3e-08
BT077384_1(BT077384|pid:none) Lepeophtheirus salmonis clone lsal...    62   6e-08
CR380949_211(CR380949|pid:none) Candida glabrata strain CBS138 c...    62   6e-08
FB336101_1(FB336101|pid:none) Sequence 3627 from Patent WO200711...    59   5e-07
FN392319_880(FN392319|pid:none) Pichia pastoris GS115 chromosome...    58   7e-07
AC009323_15(AC009323|pid:none) Arabidopsis thaliana chromosome I...    58   9e-07
AM494972_325(AM494972|pid:none) Leishmania braziliensis chromoso...    58   9e-07
FB336113_1(FB336113|pid:none) Sequence 3639 from Patent WO200711...    57   1e-06
(P47795) RecName: Full=AP-1 complex subunit mu; AltName: Full=Mu...    57   2e-06
CP000582_283(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...    55   4e-06
CT005272_313(CT005272|pid:none) Leishmania major strain Friedlin...    55   7e-06
AM502252_220(AM502252|pid:none) Leishmania infantum chromosome 34.     54   2e-05
AE017342_372(AE017342|pid:none) Cryptococcus neoformans var. neo...    53   2e-05
AB173936_1(AB173936|pid:none) Macaca fascicularis brain cDNA clo...    53   2e-05
AL833820_1(AL833820|pid:none) Homo sapiens mRNA; cDNA DKFZp586G1...    53   3e-05
AK299352_1(AK299352|pid:none) Homo sapiens cDNA FLJ51284 complet...    53   3e-05
CT005271_273(CT005271|pid:none) Leishmania major strain Friedlin...    52   4e-05
CP000588_141(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...    50   1e-04
CU928168_314(CU928168|pid:none) Kluyveromyces thermotolerans str...    50   2e-04
AM494957_215(AM494957|pid:none) Leishmania braziliensis chromoso...    50   2e-04
BT038345_1(BT038345|pid:none) Zea mays full-length cDNA clone ZM...    50   2e-04
AE016815_258(AE016815|pid:none) Ashbya gossypii (= Eremothecium ...    48   7e-04
CP001327_666(CP001327|pid:none) Micromonas sp. RCC299 chromosome...    48   7e-04
AX887602_1(AX887602|pid:none) Sequence 3465 from Patent EP1033401.     46   0.003
EU021000_1(EU021000|pid:none) Mastigoproctus giganteus clone Mga...    45   0.004
AY912467_1(AY912467|pid:none) Mus musculus strain CE/J adaptor-r...    45   0.006
AY099720_1(AY099720|pid:none) Arabidopsis thaliana clathrin-asso...    45   0.006
EU020996_1(EU020996|pid:none) Forficula auricularia clone Fau69f...    44   0.010
EU021005_1(EU021005|pid:none) Speleonectes tulumensis clone Stu6...    43   0.022
AK317765_1(AK317765|pid:none) Arabidopsis thaliana AT5G46630 mRN...    43   0.022
AX972104_1(AX972104|pid:none) Sequence 2907 from Patent EP1104808.     43   0.029
CP001185_1028(CP001185|pid:none) Thermosipho africanus TCF52B, c...    42   0.064
(P38700) RecName: Full=Adaptin medium chain homolog APM2; AltNam...    42   0.064
CR382126_1085(CR382126|pid:none) Kluyveromyces lactis strain NRR...    42   0.064
FM992689_45(FM992689|pid:none) Candida dubliniensis CD36 chromos...    41   0.084
AX972111_1(AX972111|pid:none) Sequence 2914 from Patent EP1104808.     41   0.11
AY078979_1(AY078979|pid:none) Giardia intestinalis putative adap...    40   0.14
CR382139_381(CR382139|pid:none) Debaryomyces hansenii strain CBS...    40   0.14
EU021004_1(EU021004|pid:none) Podura aquatica clone Paq69f2 puta...    40   0.14
CR382139_222(CR382139|pid:none) Debaryomyces hansenii strain CBS...    40   0.14
AB261066_1(AB261066|pid:none) Entamoeba histolytica gene for mu ...    40   0.19
AY912462_1(AY912462|pid:none) Mus musculus strain BALB/cJ adapto...    39   0.32
U85654_1(U85654|pid:none) Drosophila grimshawi clathrin associat...    39   0.32
AE014298_276(AE014298|pid:none) Drosophila melanogaster chromoso...    39   0.41
AY912468_1(AY912468|pid:none) Mus musculus strain DBA/1J adaptor...    39   0.54
AB261065_1(AB261065|pid:none) Entamoeba histolytica gene for mu ...    39   0.54
FN392319_332(FN392319|pid:none) Pichia pastoris GS115 chromosome...    38   0.92
AK119004_1(AK119004|pid:none) Arabidopsis thaliana At4g35410 mRN...    37   1.2
EU021001_1(EU021001|pid:none) Narceus americanus clone Nam69f2 p...    37   1.6
AM494966_153(AM494966|pid:none) Leishmania braziliensis chromoso...    37   2.1
BX548174_1438(BX548174|pid:none) Prochlorococcus marinus MED4 co...    37   2.1
AP008218_1004(AP008218|pid:none) Oryza sativa (japonica cultivar...    37   2.1
AM502247_169(AM502247|pid:none) Leishmania infantum chromosome 29.     36   2.7
BC096906_1(BC096906|pid:none) Danio rerio zgc:113338, mRNA (cDNA...    36   2.7
EU021011_1(EU021011|pid:none) Prodoxus quinquepunctellus clone P...    36   3.5
EU021009_1(EU021009|pid:none) Antheraea paukstadtorum clone Apau...    35   4.6
BT084094_1(BT084094|pid:none) Zea mays full-length cDNA clone ZM...    35   7.9

>AC117075_87(AC117075|pid:none) Dictyostelium discoideum chromosome 2
            map 5201047-5455781 strain AX4, complete sequence.
          Length = 516

 Score =  387 bits (993), Expect = e-106
 Identities = 198/219 (90%), Positives = 200/219 (91%), Gaps = 1/219 (0%)
 Frame = +1

Query: 670  SNTTSFIVDDCNFHECAGSGFQPNNTINFKPPQGDFTLLKYRISNNNYTPFLVKTNLEST 849
            SNTTSFIVDDC+FHECAGSGFQPNNTINFKPPQGDFTLLKYRISNNNYTPFLVKTNLEST
Sbjct: 295  SNTTSFIVDDCSFHECAGSGFQPNNTINFKPPQGDFTLLKYRISNNNYTPFLVKTNLEST 354

Query: 850  IRNRFDLVVTIRSNFSNKVVPNFIFVSIPVPKSTKSLTHSLDYGSQNQKVEYKQSTQAGN 1029
            IRNRFDLVVTIRSNFSNKVVPNFIFVSIPVPKSTKSLTHSLDYGSQNQKVEYKQSTQAGN
Sbjct: 355  IRNRFDLVVTIRSNFSNKVVPNFIFVSIPVPKSTKSLTHSLDYGSQNQKVEYKQSTQAGN 414

Query: 1030 LVFWSIKKLRGGMETILRIQIHVDGATXXXXXXXXXXXXPQIDVGSTLRKEIGPIGLEFS 1209
            LVFWSIKKLRGGMETILRIQIHVDGAT            PQIDVGSTLRKEIGPIGLEFS
Sbjct: 415  LVFWSIKKLRGGMETILRIQIHVDGATSSSSNNNQQQQQPQIDVGSTLRKEIGPIGLEFS 474

Query: 1210 IPQFSCSTLQIKFLKMLGSNISPIRGLD-I*XFKKFVSR 1323
            IPQFSCSTLQIKFLKMLGSNISPIR +  I   K FVSR
Sbjct: 475  IPQFSCSTLQIKFLKMLGSNISPIRWIRYITDSKSFVSR 513

 Score =  300 bits (768), Expect = 8e-80
 Identities = 152/152 (100%), Positives = 152/152 (100%)
 Frame = +3

Query: 99  RFDISKDSNEIFFKHVQSMKSEITPAFNIDGINYLYIKKREMYFVFTTRLLVSPSLGFEL 278
           RFDISKDSNEIFFKHVQSMKSEITPAFNIDGINYLYIKKREMYFVFTTRLLVSPSLGFEL
Sbjct: 7   RFDISKDSNEIFFKHVQSMKSEITPAFNIDGINYLYIKKREMYFVFTTRLLVSPSLGFEL 66

Query: 279 LNRASKIIQDYTASLTEEAIRLNFILIYELLDELMDYGVPQSTGTETLKAFVFTPPKQIK 458
           LNRASKIIQDYTASLTEEAIRLNFILIYELLDELMDYGVPQSTGTETLKAFVFTPPKQIK
Sbjct: 67  LNRASKIIQDYTASLTEEAIRLNFILIYELLDELMDYGVPQSTGTETLKAFVFTPPKQIK 126

Query: 459 SKQLESDSIIDNFLKATNKISVPPKQGVKPIH 554
           SKQLESDSIIDNFLKATNKISVPPKQGVKPIH
Sbjct: 127 SKQLESDSIIDNFLKATNKISVPPKQGVKPIH 158

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,722,114,336
Number of extensions: 30824586
Number of successful extensions: 66045
Number of sequences better than 10.0: 213
Number of HSP's gapped: 65778
Number of HSP's successfully gapped: 377
Length of query: 441
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 309
Effective length of database: 618,001,159
Effective search space: 190962358131
Effective search space used: 190962358131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.93  gvh: 0.24  alm: 0.42  top: 0.40  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U09543-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0