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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09539-1
Contig ID Contig-U09539-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09539-1 (Contig-U09539-1Q) /CSM_Contig/Contig-U09539-1Q.Seq.d
AATAATAAAAAAAATGCCAATAACATTTAAAGTTTGTGATAAAAAAGAAA
AAAAAGTAACATTAAATGATTTTTCAATTAATCAATTTATAAAAGATGAT
GTTAAAAAGTTAAATCCTAGAGAAAATAAATCGGATAAAGTTTATTATGA
TGCAATTAAGCAAGGAAAATCAAAACAAGAAGCATCAAAAATTTATAAAG
AATTTAGTGAAAAAGAGAAAGAATTATATGAAAAAAAGATTGAAGATATT
TGTAATAGTAAAAAAGTTTTAAAATCAAGTTTTGTTGGTGAACCATCTGG
TGATTGTGATGGTGGTGGTTTAAAATCAGTAGGATTAAATGGTTTTGTCC
ATTCTGCATGGAAGGCACATAATAATCATCACAGTTTAGTTTTACGATGT
GATAATATTTGGATGGCCGATTTTAACTCAATTTTCATTTTATGTTAATA
AAAATTCTGAACAATTACGTACAAACTTTGTAGATTTCAATGGTGAGAAA
A----------ANATCGTTAATGTCAATTATNAAAAAGTATTTTNAATTT
GTAATGCANACANAATNTGGCTTACCANAAGTAACNCTATTAGGTGAAAT
TAGTGATTGGGTTAATTTAAAANAAANAGTTTNTTTATTAATTCATTTTG
ANACTGAAAANAATCAAATGTCAAAATGGTTAAAGTATTTATTACCAATT
ATGGATAAATTCATTGAATNTGCAAATGGAAATCCANATATTAAATGGTG
GAATCNAATGGTNAACTATAATGAACNATCAGGTGGATNTGAGTTATCAG
GTTGGTTATCAAGNTTTTGTCNTTTTACAAATGATGGTGATTTTCAANAA
ANAAGTTTAATGGATTACTTTCCNTTTCCNATAGTTGATGGATATAATAN
ACCNAATGGATTTTTATCAGCNCCNATAAAATTGATTGATTATGATCNTT
CAGA
Gap gap included
Contig length 944
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2763900
End point 2762955
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09539
List of clone(s) 

est1=VFA826F,1,502
est2=VFA826Z,503,946
Translated Amino Acid sequence 
**kkcq*hlkfvikkkkk*h*mifqlinl*kmmlks*ilekinrikfimmqlskenqnkk
hqkfiknlvkkrknymkkrlkifvivkkf*nqvllvnhlvivmvvv*nq*d*mvlsilhg
rhiiiitv*FYDVIIFGWPILTQFSFYVNKNSEQLRTNFVDFNGEK---

---XSLMSIXKKYFXFVMXTXXGLPXVTLLGEISDWVNLKXXVXLLIHFXTEXNQMSKWL
KYLLPIMDKFIEXANGNPXIKWWNXMVNYNEXSGGXELSGWLSXFCXFTNDGDFQXXSLM
DYFPFPIVDGYNXPNGFLSAPIKLIDYDXS
Translated Amino Acid sequence (All Frames) 
Frame A:
nnkknanni*sl**krkksnik*ffn*siykr*c*kvks*rk*ig*sll*cn*arkiktr
siknl*ri**krerii*kkd*ryl***ksfkikfcw*tiw*l*wwwfkisrikwfcpfcm
egt**ssqfsftm**yldgrf*lnfhfmlikilnnyvqtl*ismvrk---

---XSLMSIXKKYFXFVMXTXXGLPXVTLLGEISDWVNLKXXVXLLIHFXTEXNQMSKWL
KYLLPIMDKFIEXANGNPXIKWWNXMVNYNEXSGGXELSGWLSXFCXFTNDGDFQXXSLM
DYFPFPIVDGYNXPNGFLSAPIKLIDYDXS

Frame B:
iikkmpitfkvcdkkekkvtlndfsinqfikddvkklnprenksdkvyydaikqgkskqe
askiykefsekekelyekkiedicnskkvlkssfvgepsgdcdggglksvglngfvhsaw
kahnnhhslvlrcdniwmadfnsifilc**kf*tityklcrfqw*e---

---xr*cqlxksixnl*cxxnxayxk*xy*vklvigli*xkxfxy*filxlkxikcqng*
siyyqlwinslnxqmeixilnggixwxtimnxqvdxsyqvgyqxfvxlqmmvifxkxv*w
itfxfx*lmdiixxmdfyqxx*n*limixq

Frame C:
**kkcq*hlkfvikkkkk*h*mifqlinl*kmmlks*ilekinrikfimmqlskenqnkk
hqkfiknlvkkrknymkkrlkifvivkkf*nqvllvnhlvivmvvv*nq*d*mvlsilhg
rhiiiitv*FYDVIIFGWPILTQFSFYVNKNSEQLRTNFVDFNGEK---

---ivnvnyxkvfxicnaxxxwltxsnxir*n**lg*fkxxsxfinsf*x*kxsnvkmvk
vfitnyg*ih*xckwksxy*mvesngxl**tirwx*virlvikxlsfyk*w*fsxxkfng
llsxsxs*wi*xtxwifisxxkid*l*sfr
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09539-1 (Contig-U09539-1Q)
/CSM_Contig/Contig-U09539-1Q.Seq.d
         (954 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09539-1 (Contig-U09539-1Q) /CSM_Contig/Conti...  1461  0.0
Contig-U00230-1 (Contig-U00230-1Q) /CSM_Contig/Conti...    56  7e-08
Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11684-1 (Contig-U11684-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U13709-1 (Contig-U13709-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U12236-1 (Contig-U12236-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U11903-1 (Contig-U11903-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U10748-1 (Contig-U10748-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U08199-1 (Contig-U08199-1Q) /CSM_Contig/Conti...    36  0.067

>Contig-U09539-1 (Contig-U09539-1Q) /CSM_Contig/Contig-U09539-1Q.Seq.d
          Length = 954

 Score = 1461 bits (737), Expect = 0.0
 Identities = 885/899 (98%)
 Strand = Plus / Plus

                                                                       
Query: 56  gtaacattaaatgatttttcaattaatcaatttataaaagatgatgttaaaaagttaaat 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  gtaacattaaatgatttttcaattaatcaatttataaaagatgatgttaaaaagttaaat 115

                                                                       
Query: 116 cctagagaaaataaatcggataaagtttattatgatgcaattaagcaaggaaaatcaaaa 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 cctagagaaaataaatcggataaagtttattatgatgcaattaagcaaggaaaatcaaaa 175

                                                                       
Query: 176 caagaagcatcaaaaatttataaagaatttagtgaaaaagagaaagaattatatgnnnnn 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 176 caagaagcatcaaaaatttataaagaatttagtgaaaaagagaaagaattatatgaaaaa 235

                                                                       
Query: 236 nngattgaagatatttgtaatagtaaaaaagttttaaaatcaagttttgttggtgaacca 295
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 aagattgaagatatttgtaatagtaaaaaagttttaaaatcaagttttgttggtgaacca 295

                                                                       
Query: 296 tctggtgattgtgatggtggtggtttaaaatcagtaggattaaatggttttgtccattct 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tctggtgattgtgatggtggtggtttaaaatcagtaggattaaatggttttgtccattct 355

                                                                       
Query: 356 gcatggaaggcacataataatcatcacagtttagttttacgatgtgataatatttggatg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcatggaaggcacataataatcatcacagtttagttttacgatgtgataatatttggatg 415

                                                                       
Query: 416 gccgattttaactcaattttcattttatgttaataaaaattctgaacaattacgtacaaa 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gccgattttaactcaattttcattttatgttaataaaaattctgaacaattacgtacaaa 475

                                                                       
Query: 476 ctttgtagatttcaatggtgagaaaannnnnnnnnnanatcgttaatgtcaattatnaaa 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctttgtagatttcaatggtgagaaaannnnnnnnnnanatcgttaatgtcaattatnaaa 535

                                                                       
Query: 536 aagtattttnaatttgtaatgcanacanaatntggcttaccanaagtaacnctattaggt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aagtattttnaatttgtaatgcanacanaatntggcttaccanaagtaacnctattaggt 595

                                                                       
Query: 596 gaaattagtgattgggttaatttnnnnnnnnnagtttntttattaattcattttganact 655
           |||||||||||||||||||||||    |   |||||||||||||||||||||||||||||
Sbjct: 596 gaaattagtgattgggttaatttaaaanaaanagtttntttattaattcattttganact 655

                                                                       
Query: 656 gaaaanaatcaaatgtcaaaatggttaaagtatttattaccaattatggataaattcatt 715
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaaaanaatcaaatgtcaaaatggttaaagtatttattaccaattatggataaattcatt 715

                                                                       
Query: 716 gaatntgcaaatggaaatccanatattaaatggtggaatcnaatggtnaactataatgaa 775
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gaatntgcaaatggaaatccanatattaaatggtggaatcnaatggtnaactataatgaa 775

                                                                       
Query: 776 cnatcaggtggatntgagttatcaggttggttatcaagnttttgtcnttttacaaatgat 835
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cnatcaggtggatntgagttatcaggttggttatcaagnttttgtcnttttacaaatgat 835

                                                                       
Query: 836 ggtgattttcaanaaanaagtttaatggattactttccntttccnatagttgatggatat 895
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ggtgattttcaanaaanaagtttaatggattactttccntttccnatagttgatggatat 895

                                                                      
Query: 896 aatanaccnaatggatttttatcagcnccnataaaattgattgattatgatcnttcaga 954
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 aatanaccnaatggatttttatcagcnccnataaaattgattgattatgatcnttcaga 954


 Score = 79.8 bits (40), Expect = 5e-15
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                  
Query: 1  aataataaaaaaaatgccaataacatttaaagtttgtgat 40
          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aataataaaaaaaatgccaataacatttaaagtttgtgat 40


>Contig-U00230-1 (Contig-U00230-1Q) /CSM_Contig/Contig-U00230-1Q.Seq.d
          Length = 1754

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 74/88 (84%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                        
Query: 400  tgataatatttggatggccgattttaactcaattttcattttatgttaataaaaattctg 459
            ||||||||| ||||||||  || ||||||||| | ||||| || || |||||||| ||||
Sbjct: 946  tgataatatctggatggca-atattaactcaactatcattctacgtaaataaaaactctg 1004

                                        
Query: 460  aacaattacgtacaaactttgtagattt 487
            || ||||||||  ||| |||||||||||
Sbjct: 1005 aagaattacgtgaaaaatttgtagattt 1032


 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 686  tatttattaccaattatggataaattcattgaatntgcaaatggaaatcc 735
            ||||||||| || | || |||||||||||||| | |||||| ||||||||
Sbjct: 1388 tatttattagcagtgattgataaattcattgattctgcaaaaggaaatcc 1437


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 579  aagtaacnctattaggtgaaattagtgattgg 610
            |||||||  ||||||||||||||| |||||||
Sbjct: 1278 aagtaacattattaggtgaaattaatgattgg 1309


>Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Contig-U12581-1Q.Seq.d
          Length = 1389

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 193 ttataaagaatttagtgaaa 212
           ||||||||||||||||||||
Sbjct: 315 ttataaagaatttagtgaaa 334


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,283
Number of Sequences: 6905
Number of extensions: 18283
Number of successful extensions: 2213
Number of sequences better than 10.0: 260
length of query: 954
length of database: 5,674,871
effective HSP length: 16
effective length of query: 938
effective length of database: 5,564,391
effective search space: 5219398758
effective search space used: 5219398758
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09539-1 (Contig-U09539-1Q) /CSM_Contig/Contig-U09539-1Q.Seq.d
         (954 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ410901) Dictyostelium discoideum cDNA clone:ddv2d08, 5' e...   523   0.0    3
(BJ429075) Dictyostelium discoideum cDNA clone:ddv2d08, 3' e...   702   0.0    1
(BJ341039) Dictyostelium discoideum cDNA clone:dda4o19, 3' e...    56   2e-10  2
(BJ431451) Dictyostelium discoideum cDNA clone:ddv14p05, 3' ...    56   3e-10  2
(BJ431772) Dictyostelium discoideum cDNA clone:ddv15b14, 3' ...    54   7e-10  2
(BJ341825) Dictyostelium discoideum cDNA clone:dda8h07, 3' e...    56   9e-10  2
(BJ413420) Dictyostelium discoideum cDNA clone:ddv15b14, 5' ...    42   5e-05  3
(BJ413114) Dictyostelium discoideum cDNA clone:ddv14p05, 5' ...    50   0.008  2
(AC108172) Homo sapiens chromosome 5 clone RP11-171P23, comp...    52   0.039  1
(AC008869) Homo sapiens chromosome 5 clone CTD-2194L12, comp...    52   0.039  1
(AC108087) Homo sapiens chromosome 5 clone CTD-2264G13, WORK...    52   0.039  1
(AC107994) Homo sapiens chromosome 18 clone RP11-316N5 map 1...    52   0.039  1
(EJ905090) 1093018508836 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.14   2
(EJ802481) 1093017437096 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.15   2
(AC212301) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    50   0.16   1
(CU694603) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.16   1
(AK247597) Solanum lycopersicum cDNA, clone: LEFL1058AH06, H...    50   0.16   1
(EK932753) 1093018286788 Global-Ocean-Sampling_GS-33-01-01-1...    50   0.16   1
(DX531576) GH_MBb0033A16f GH_MBb Gossypium hirsutum genomic ...    50   0.16   1
(DE154510) Bombyx mori genomic DNA, Fosmid clone:RO0296-N16_F.     50   0.16   1
(DB702495) Solanum lycopersicum cDNA, clone: LEFL1076DF03, 5...    50   0.16   1
(DB696593) Solanum lycopersicum cDNA, clone: LEFL1058AH06, 5...    50   0.16   1
(DB689141) Solanum lycopersicum cDNA, clone: LEFL1035BA07, 5...    50   0.16   1
(DB681161) Solanum lycopersicum cDNA, clone: LEFL1009CB04, 5...    50   0.16   1
(DB680092) Solanum lycopersicum cDNA, clone: LEFL1006AH05, 5...    50   0.16   1
(DB678869) Solanum lycopersicum cDNA, clone: LEFL1002CE11, 5...    50   0.16   1
(AI778557) EST259436 tomato susceptible, Cornell Solanum lyc...    50   0.16   1
(BI421711) EST532377 tomato callus, TAMU Solanum lycopersicu...    50   0.16   1
(BG130220) EST475866 tomato shoot/meristem Solanum lycopersi...    50   0.16   1
(BF097979) EST416052 tomato nutrient deficient roots Solanum...    50   0.16   1
(BE434665) EST405743 tomato breaker fruit, TIGR Solanum lyco...    50   0.16   1
(BE354617) EST354707 tomato flower buds 8 mm to pre-anthesis...    50   0.16   1
(BE354506) EST355849 tomato flower buds, anthesis, Cornell U...    50   0.16   1
(AW737899) EST339326 tomato flower buds, anthesis, Cornell U...    50   0.16   1
(AW737375) EST338718 tomato flower buds, anthesis, Cornell U...    50   0.16   1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   0.24   10
(AF506028) Poncirus trifoliata citrus tristeza virus resista...    48   0.27   4
(AC011187) Homo sapiens clone RP11-13I6, WORKING DRAFT SEQUE...    40   0.46   3
(EA012370) Sequence 1 from patent US 7126044.                      48   0.61   1
(AL590426) Human DNA sequence from clone RP11-354K4 on chrom...    48   0.61   1
(AL591037) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.61   1
(AQ591901) HS_5436_A1_H01_SP6E RPCI-11 Human Male BAC Librar...    48   0.61   1
(ET114101) QM0AAC25BB07FM1 CCH3 Citrus clementina genomic cl...    48   0.61   1
(ET113021) QM0AAC23BA07RM1 CCH3 Citrus clementina genomic cl...    48   0.61   1
(ET112755) QM0AAC22CF05FM1 CCH3 Citrus clementina genomic cl...    48   0.61   1
(ET111687) QM0AAC20DH01RM1 CCH3 Citrus clementina genomic cl...    48   0.61   1
(ET111061) QM0AAC20AA04RM1 CCH3 Citrus clementina genomic cl...    48   0.61   1
(ET105020) QM0AAC10CE07FM1 CCH3 Citrus clementina genomic cl...    48   0.61   1
(ET094580) QM0AAA21BG01FM1 CCL1 Citrus clementina genomic cl...    48   0.61   1
(ET094214) QM0AAA20DF10FM1 CCL1 Citrus clementina genomic cl...    48   0.61   1
(ET093689) QM0AAA20AG10FM1 CCL1 Citrus clementina genomic cl...    48   0.61   1
(ET092853) QM0AAA18DG04RM1 CCL1 Citrus clementina genomic cl...    48   0.61   1
(ET092070) QM0AAA17DC08RM1 CCL1 Citrus clementina genomic cl...    48   0.61   1
(ET072527) QM0AAA7AC11FM1 CCL1 Citrus clementina genomic clo...    48   0.61   1
(FD463987) LARW284TR Haematobia irritans 1st Instar Larvae H...    48   0.61   1
(FD463986) LARW284TF Haematobia irritans 1st Instar Larvae H...    48   0.61   1
(FD457794) EGGBG22TF Haematobia irritans eggs Haematobia irr...    48   0.61   1
(AC104781) Homo sapiens BAC clone RP11-30C22 from 2, complet...    40   0.90   2
(EU401991) Lygus lineolaris mitochondrion, partial genome.         44   0.94   3
(AL773566) Mouse DNA sequence from clone RP23-181C9 on chrom...    44   1.0    4
(BX537338) Zebrafish DNA sequence from clone DKEY-258E8 in l...    34   1.2    2
(AL954832) Zebrafish DNA sequence from clone DKEY-15O4.            34   1.2    2
(AC011211) Homo sapiens clone RP11-3M19, WORKING DRAFT SEQUE...    40   1.3    2
(AC097456) Homo sapiens chromosome 2 clone RP11-3A17, WORKIN...    40   1.3    2
(AC040988) Homo sapiens chromosome 2 clone RP11-39G4 map 2, ...    40   1.4    2
(EU332852) Homo sapiens mitogen-activated protein kinase 1 (...    46   2.4    1
(DQ508104) Homo sapiens mitogen-activated protein kinase 1 (...    46   2.4    1
(AP000555) Homo sapiens genomic DNA, chromosome 22q11.2, BCR...    46   2.4    1
(CU928740) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.4    1
(AC220329) Bos taurus clone CH240-361H2, WORKING DRAFT SEQUE...    46   2.4    1
(AC170356) Bos taurus clone CH240-224B3, WORKING DRAFT SEQUE...    46   2.4    1
(ET112723) QM0AAC22CD09RM1 CCH3 Citrus clementina genomic cl...    46   2.4    1
(ER972976) AF__Bc0066F02r AF__Bc Aquilegia formosa genomic, ...    46   2.4    1
(ER971966) AF__Bc0055L07f AF__Bc Aquilegia formosa genomic, ...    46   2.4    1
(EI763129) CHORI510R314P20TR BAC library from the primary ov...    46   2.4    1
(ED814422) ML__Ba0092N03r ML__Ba Mimulus lewisii genomic, ge...    46   2.4    1
(DN309332) PL06004A2G11 cDNA from juvenile hermaphodites Sch...    46   2.4    1
(BI029542) PM0-MT0202-120301-008-f12 MT0202 Homo sapiens cDN...    46   2.4    1
(CU570779) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   2.9    5
(AC198806) Pan troglodytes BAC clone CH251-170C24 from chrom...    38   3.1    6
(BH166483) ENTRQ73TR Entamoeba histolytica Sheared DNA Entam...    34   3.5    3
(EG551348) MM01C10_XP Sugar Beet germination cDNA library Be...    38   3.6    2
(AC020315) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   4.0    2
(AC182059) Bos taurus clone CH240-343P8, WORKING DRAFT SEQUE...    42   4.4    3
(AC139816) Homo sapiens chromosome 5 clone RP11-1398O9, WORK...    32   4.5    2
(AC213889) Zea mays chromosome 7 clone CH201-9B6; ZMMBBc0009...    34   4.5    2
(AC145228) Zea mays clone ZMMBBc0032A01, *** SEQUENCING IN P...    34   4.5    2
(AC198720) Zea mays chromosome 6 clone CH201-426J18; ZMMBBc0...    34   4.5    2
(AC191105) Zea mays chromosome 2 clone CH201-322B21; ZMMBBc0...    34   4.5    2
(AC217936) Zea mays chromosome 7 clone CH201-85A8; ZMMBBc008...    34   4.5    2
(AC192561) Zea mays chromosome 6 clone CH201-435L12; ZMMBBc0...    34   4.6    2
(AC207114) Zea mays chromosome 1 clone CH201-334D3; ZMMBBc03...    34   4.6    2
(AC211169) Zea mays chromosome 5 clone CH201-57I4; ZMMBBc005...    34   4.6    2
(AC208547) Zea mays chromosome 1 clone CH201-324D1; ZMMBBc03...    34   4.6    2
(AC195367) Zea mays chromosome 4 clone CH201-19H4; ZMMBBc001...    34   4.6    2
(AC190943) Zea mays chromosome 2 clone CH201-514L13; ZMMBBc0...    34   4.6    2
(CG163234) PUFLB05TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    34   6.3    2
(CG163233) PUFLB05TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    34   6.3    2
(CG690115) ZMMBBc0134E11r ZMMBBc (EcoRI) Zea mays subsp. may...    34   6.5    2
(AM439729) Vitis vinifera contig VV78X014961.4, whole genome...    44   7.8    2

>(BJ410901) Dictyostelium discoideum cDNA clone:ddv2d08, 5' end,
           single read.
          Length = 502

 Score =  523 bits (264), Expect(3) = 0.0
 Identities = 264/264 (100%)
 Strand = Plus / Plus


Query: 238 gattgaagatatttgtaatagtaaaaaagttttaaaatcaagttttgttggtgaaccatc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gattgaagatatttgtaatagtaaaaaagttttaaaatcaagttttgttggtgaaccatc 297


Query: 298 tggtgattgtgatggtggtggtttaaaatcagtaggattaaatggttttgtccattctgc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tggtgattgtgatggtggtggtttaaaatcagtaggattaaatggttttgtccattctgc 357


Query: 358 atggaaggcacataataatcatcacagtttagttttacgatgtgataatatttggatggc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atggaaggcacataataatcatcacagtttagttttacgatgtgataatatttggatggc 417


Query: 418 cgattttaactcaattttcattttatgttaataaaaattctgaacaattacgtacaaact 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cgattttaactcaattttcattttatgttaataaaaattctgaacaattacgtacaaact 477


Query: 478 ttgtagatttcaatggtgagaaaa 501
           ||||||||||||||||||||||||
Sbjct: 478 ttgtagatttcaatggtgagaaaa 501

 Score =  216 bits (109), Expect(3) = 0.0
 Identities = 109/109 (100%)
 Strand = Plus / Plus


Query: 56  gtaacattaaatgatttttcaattaatcaatttataaaagatgatgttaaaaagttaaat 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  gtaacattaaatgatttttcaattaatcaatttataaaagatgatgttaaaaagttaaat 115


Query: 116 cctagagaaaataaatcggataaagtttattatgatgcaattaagcaag 164
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 cctagagaaaataaatcggataaagtttattatgatgcaattaagcaag 164

 Score = 52.0 bits (26), Expect(3) = 0.0
 Identities = 26/26 (100%)
 Strand = Plus / Plus


Query: 15 tgccaataacatttaaagtttgtgat 40
          ||||||||||||||||||||||||||
Sbjct: 15 tgccaataacatttaaagtttgtgat 40

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 879,207,992
Number of extensions: 55808153
Number of successful extensions: 4427772
Number of sequences better than 10.0: 176
Length of query: 954
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 930
Effective length of database: 97,308,875,965
Effective search space: 90497254647450
Effective search space used: 90497254647450
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09539-1 (Contig-U09539-1Q) /CSM_Contig/Contig-U09539-1Q.Seq.d
         (954 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000113_2189(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    54   1e-05
AM920431_1540(AM920431|pid:none) Penicillium chrysogenum Wiscons...    53   2e-05
AM746676_7829(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    52   3e-05
CU633900_662(CU633900|pid:none) Podospora anserina genomic DNA c...    41   0.052
(Q5UQ60) RecName: Full=Uncharacterized protein L662;  &AY653733_...    40   0.089
CP000875_3836(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    40   0.089
CU638743_122(CU638743|pid:none) Podospora anserina genomic DNA c...    40   0.12
AE015928_4406(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    40   0.12
AM920437_1895(AM920437|pid:none) Penicillium chrysogenum Wiscons...    37   0.76
AM746676_1988(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    37   0.99
EU136189_18(EU136189|pid:none) Staphylococcus phage SAP-2, compl...    34   8.4

>CP000113_2189(CP000113|pid:none) Myxococcus xanthus DK 1622,
           complete genome.
          Length = 539

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 26/78 (33%), Positives = 40/78 (51%)
 Frame = +2

Query: 518 LMSIXKKYFXFVMXTXXGLPXVTLLGEISDWVNLKXXVXLLIHFXTEXNQMSKWLKYLLP 697
           LM   ++YF +V+    G+P +TL G   DW  L+  V  L  +      M  W ++LLP
Sbjct: 181 LMDAMREYFDYVVMCICGIPTITLEGSPEDWRKLRDKVGQLPRYG-----METWARHLLP 235

Query: 698 IMDKFIEXANGNPXIKWW 751
           + D+FI  + G    K+W
Sbjct: 236 LCDQFIRASEGREDRKFW 253

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,104,390,530
Number of extensions: 17456224
Number of successful extensions: 40764
Number of sequences better than 10.0: 11
Number of HSP's gapped: 40749
Number of HSP's successfully gapped: 19
Length of query: 318
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 190
Effective length of database: 630,818,299
Effective search space: 119855476810
Effective search space used: 119855476810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U09539-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0